0.011057
0.006384
0.000000
0.000000
0.012768
0.000000
0.000000
0.000000
0.010787
0.00000
0.00000
0.00000
Fetics, S.K.
Kearney, B.M.
Buhrman, G.
Mattos, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
90.440
90.440
92.703
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C4 H10 O2 S2
154.251
(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C10 H17 N6 O13 P3
522.196
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
CA
N
82
N
N
N
83
R
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
S
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
S
N
97
N
C
N
98
S
C
N
99
N
O
N
100
R
C
N
101
N
O
N
102
N
C
N
103
N
S
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
S
C
N
116
N
C
N
117
N
O
N
118
N
C
N
119
N
C
N
120
N
C
N
121
N
O
N
122
N
N
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
O
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
P
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
N
N
168
R
P
N
169
N
O
N
170
N
O
N
171
N
O
N
172
S
P
N
173
N
O
N
174
N
O
N
175
N
O
N
176
N
C
N
177
R
C
N
178
N
O
N
179
S
C
N
180
N
O
N
181
R
C
N
182
N
O
N
183
R
C
Y
184
N
N
Y
185
N
C
Y
186
N
N
Y
187
N
C
Y
188
N
C
N
189
N
O
Y
190
N
N
Y
191
N
C
N
192
N
N
Y
193
N
N
Y
194
N
C
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
Y
217
N
C
Y
218
N
N
Y
219
N
C
Y
220
N
C
Y
221
N
N
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
S
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
N
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
S
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
MG
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
N
371
N
O
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
R
C
N
385
N
O
N
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
N
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
N
C
N
453
N
C
N
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
Y
187
N
sing
Y
188
N
sing
Y
189
N
doub
N
190
N
sing
Y
191
N
sing
Y
192
N
sing
Y
193
N
doub
N
194
N
doub
Y
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
Y
199
N
doub
N
200
N
sing
N
201
N
sing
Y
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
Y
214
N
sing
Y
215
N
doub
Y
216
N
doub
N
217
N
sing
Y
218
N
sing
N
219
N
sing
Y
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
Y
322
N
doub
Y
323
N
sing
Y
324
N
sing
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
Y
419
N
doub
Y
420
N
sing
Y
421
N
sing
N
422
N
sing
Y
423
N
doub
N
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
doub
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
UK
Structure
STRUE6
2005
0969-2126
23
505
516
10.1016/j.str.2014.12.017
25684575
Allosteric Effects of the Oncogenic RasQ61L Mutant on Raf-RBD.
2015
10.2210/pdb4g0n/pdb
pdb_00004g0n
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
MARMOSAIC 300 mm CCD
crystal
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
23-ID-D
APS
1.0
SYNCHROTRON
APS BEAMLINE 23-ID-D
18875.191
GTPase HRas
UNP residues 1-166
1
man
polymer
8890.394
RAF proto-oncogene serine/threonine-protein kinase
2.7.11.1
UNP residues 54-131
1
man
polymer
522.196
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
1
syn
non-polymer
40.078
CALCIUM ION
2
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
59.044
ACETATE ION
1
syn
non-polymer
154.251
(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
1
syn
non-polymer
18.015
water
82
nat
water
H-Ras-1, Ha-Ras, Transforming protein p21, c-H-ras, p21ras, GTPase HRas, N-terminally processed
Proto-oncogene c-RAF, cRaf, Raf-1
no
no
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC
VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV
REIRQH
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC
VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV
REIRQH
A
polypeptide(L)
no
no
TSNTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDFL
TSNTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDFL
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
HRAS, HRAS1
9606
Homo sapiens
562
Escherichia coli
plasmid
pET21
human
sample
RAF1, RAF
9606
Homo sapiens
562
Escherichia coli
plasmid
pET302/NT-His
1
3.94
68.80
VAPOR DIFFUSION, SITTING DROP
6.8
Protein solution: 10 - 16 mg/mL, 50 mM HEPES, pH 7.2, 50 mM NaCl, 10mM MgCl2 5% Glycerol, 1mM DTE, 10 M ZnCl2
Reservoir solution:200mM calcium acetate, 100mM sodium cacodylate pH 6.5, 18% PEG 8000.
Drop: 1uL protein, 1uL reservoir, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2013-07-17
1
1
2015-03-11
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-07-09
REL
REL
GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
CA
CALCIUM ION
MG
MAGNESIUM ION
ACT
ACETATE ION
DTU
(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
HOH
water
GNP
528
3
GNP
GNP
201
A
CA
1
4
CA
CA
202
A
MG
1
5
MG
MG
203
A
CA
1
4
CA
CA
204
A
ACT
719
6
ACT
ACT
205
A
DTU
205
7
DTU
DTU
206
A
HOH
600
8
HOH
HOH
301
A
HOH
601
8
HOH
HOH
302
A
HOH
602
8
HOH
HOH
303
A
HOH
603
8
HOH
HOH
304
A
HOH
604
8
HOH
HOH
305
A
HOH
606
8
HOH
HOH
306
A
HOH
607
8
HOH
HOH
307
A
HOH
608
8
HOH
HOH
308
A
HOH
609
8
HOH
HOH
309
A
HOH
610
8
HOH
HOH
310
A
HOH
611
8
HOH
HOH
311
A
HOH
612
8
HOH
HOH
312
A
HOH
613
8
HOH
HOH
313
A
HOH
614
8
HOH
HOH
314
A
HOH
615
8
HOH
HOH
315
A
HOH
616
8
HOH
HOH
316
A
HOH
617
8
HOH
HOH
317
A
HOH
618
8
HOH
HOH
318
A
HOH
619
8
HOH
HOH
319
A
HOH
620
8
HOH
HOH
320
A
HOH
621
8
HOH
HOH
321
A
HOH
622
8
HOH
HOH
322
A
HOH
623
8
HOH
HOH
323
A
HOH
624
8
HOH
HOH
324
A
HOH
625
8
HOH
HOH
325
A
HOH
626
8
HOH
HOH
326
A
HOH
627
8
HOH
HOH
327
A
HOH
628
8
HOH
HOH
328
A
HOH
629
8
HOH
HOH
329
A
HOH
630
8
HOH
HOH
330
A
HOH
631
8
HOH
HOH
331
A
HOH
634
8
HOH
HOH
332
A
HOH
635
8
HOH
HOH
333
A
HOH
637
8
HOH
HOH
334
A
HOH
638
8
HOH
HOH
335
A
HOH
639
8
HOH
HOH
336
A
HOH
640
8
HOH
HOH
337
A
HOH
643
8
HOH
HOH
338
A
HOH
644
8
HOH
HOH
339
A
HOH
645
8
HOH
HOH
340
A
HOH
646
8
HOH
HOH
341
A
HOH
647
8
HOH
HOH
342
A
HOH
648
8
HOH
HOH
343
A
HOH
652
8
HOH
HOH
344
A
HOH
653
8
HOH
HOH
345
A
HOH
654
8
HOH
HOH
346
A
HOH
655
8
HOH
HOH
347
A
HOH
656
8
HOH
HOH
348
A
HOH
657
8
HOH
HOH
349
A
HOH
658
8
HOH
HOH
350
A
HOH
659
8
HOH
HOH
351
A
HOH
660
8
HOH
HOH
352
A
HOH
661
8
HOH
HOH
353
A
HOH
662
8
HOH
HOH
354
A
HOH
663
8
HOH
HOH
355
A
HOH
665
8
HOH
HOH
356
A
HOH
666
8
HOH
HOH
357
A
HOH
667
8
HOH
HOH
358
A
HOH
668
8
HOH
HOH
359
A
HOH
670
8
HOH
HOH
360
A
HOH
671
8
HOH
HOH
361
A
HOH
673
8
HOH
HOH
362
A
HOH
674
8
HOH
HOH
363
A
HOH
675
8
HOH
HOH
364
A
HOH
676
8
HOH
HOH
365
A
HOH
677
8
HOH
HOH
366
A
HOH
678
8
HOH
HOH
367
A
HOH
679
8
HOH
HOH
368
A
HOH
680
8
HOH
HOH
369
A
HOH
681
8
HOH
HOH
370
A
HOH
605
8
HOH
HOH
201
B
HOH
632
8
HOH
HOH
202
B
HOH
633
8
HOH
HOH
203
B
HOH
636
8
HOH
HOH
204
B
HOH
641
8
HOH
HOH
205
B
HOH
642
8
HOH
HOH
206
B
HOH
649
8
HOH
HOH
207
B
HOH
650
8
HOH
HOH
208
B
HOH
651
8
HOH
HOH
209
B
HOH
664
8
HOH
HOH
210
B
HOH
669
8
HOH
HOH
211
B
HOH
672
8
HOH
HOH
212
B
MET
1
n
1
MET
1
A
THR
2
n
2
THR
2
A
GLU
3
n
3
GLU
3
A
TYR
4
n
4
TYR
4
A
LYS
5
n
5
LYS
5
A
LEU
6
n
6
LEU
6
A
VAL
7
n
7
VAL
7
A
VAL
8
n
8
VAL
8
A
VAL
9
n
9
VAL
9
A
GLY
10
n
10
GLY
10
A
ALA
11
n
11
ALA
11
A
GLY
12
n
12
GLY
12
A
GLY
13
n
13
GLY
13
A
VAL
14
n
14
VAL
14
A
GLY
15
n
15
GLY
15
A
LYS
16
n
16
LYS
16
A
SER
17
n
17
SER
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
THR
20
n
20
THR
20
A
ILE
21
n
21
ILE
21
A
GLN
22
n
22
GLN
22
A
LEU
23
n
23
LEU
23
A
ILE
24
n
24
ILE
24
A
GLN
25
n
25
GLN
25
A
ASN
26
n
26
ASN
26
A
HIS
27
n
27
HIS
27
A
PHE
28
n
28
PHE
28
A
VAL
29
n
29
VAL
29
A
ASP
30
n
30
ASP
30
A
GLU
31
n
31
GLU
31
A
TYR
32
n
32
TYR
32
A
ASP
33
n
33
ASP
33
A
PRO
34
n
34
PRO
34
A
THR
35
n
35
THR
35
A
ILE
36
n
36
ILE
36
A
GLU
37
n
37
GLU
37
A
ASP
38
n
38
ASP
38
A
SER
39
n
39
SER
39
A
TYR
40
n
40
TYR
40
A
ARG
41
n
41
ARG
41
A
LYS
42
n
42
LYS
42
A
GLN
43
n
43
GLN
43
A
VAL
44
n
44
VAL
44
A
VAL
45
n
45
VAL
45
A
ILE
46
n
46
ILE
46
A
ASP
47
n
47
ASP
47
A
GLY
48
n
48
GLY
48
A
GLU
49
n
49
GLU
49
A
THR
50
n
50
THR
50
A
CYS
51
n
51
CYS
51
A
LEU
52
n
52
LEU
52
A
LEU
53
n
53
LEU
53
A
ASP
54
n
54
ASP
54
A
ILE
55
n
55
ILE
55
A
LEU
56
n
56
LEU
56
A
ASP
57
n
57
ASP
57
A
THR
58
n
58
THR
58
A
ALA
59
n
59
ALA
59
A
GLY
60
n
60
GLY
60
A
GLN
61
n
61
GLN
61
A
GLU
62
n
62
GLU
62
A
GLU
63
n
63
GLU
63
A
n
64
64
A
n
65
65
A
ALA
66
n
66
ALA
66
A
MET
67
n
67
MET
67
A
ARG
68
n
68
ARG
68
A
ASP
69
n
69
ASP
69
A
GLN
70
n
70
GLN
70
A
TYR
71
n
71
TYR
71
A
MET
72
n
72
MET
72
A
ARG
73
n
73
ARG
73
A
THR
74
n
74
THR
74
A
GLY
75
n
75
GLY
75
A
GLU
76
n
76
GLU
76
A
GLY
77
n
77
GLY
77
A
PHE
78
n
78
PHE
78
A
LEU
79
n
79
LEU
79
A
CYS
80
n
80
CYS
80
A
VAL
81
n
81
VAL
81
A
PHE
82
n
82
PHE
82
A
ALA
83
n
83
ALA
83
A
ILE
84
n
84
ILE
84
A
ASN
85
n
85
ASN
85
A
ASN
86
n
86
ASN
86
A
THR
87
n
87
THR
87
A
LYS
88
n
88
LYS
88
A
SER
89
n
89
SER
89
A
PHE
90
n
90
PHE
90
A
GLU
91
n
91
GLU
91
A
ASP
92
n
92
ASP
92
A
ILE
93
n
93
ILE
93
A
HIS
94
n
94
HIS
94
A
GLN
95
n
95
GLN
95
A
TYR
96
n
96
TYR
96
A
ARG
97
n
97
ARG
97
A
GLU
98
n
98
GLU
98
A
GLN
99
n
99
GLN
99
A
ILE
100
n
100
ILE
100
A
LYS
101
n
101
LYS
101
A
ARG
102
n
102
ARG
102
A
VAL
103
n
103
VAL
103
A
LYS
104
n
104
LYS
104
A
ASP
105
n
105
ASP
105
A
SER
106
n
106
SER
106
A
ASP
107
n
107
ASP
107
A
ASP
108
n
108
ASP
108
A
VAL
109
n
109
VAL
109
A
PRO
110
n
110
PRO
110
A
MET
111
n
111
MET
111
A
VAL
112
n
112
VAL
112
A
LEU
113
n
113
LEU
113
A
VAL
114
n
114
VAL
114
A
GLY
115
n
115
GLY
115
A
ASN
116
n
116
ASN
116
A
LYS
117
n
117
LYS
117
A
CYS
118
n
118
CYS
118
A
ASP
119
n
119
ASP
119
A
LEU
120
n
120
LEU
120
A
ALA
121
n
121
ALA
121
A
ALA
122
n
122
ALA
122
A
ARG
123
n
123
ARG
123
A
THR
124
n
124
THR
124
A
VAL
125
n
125
VAL
125
A
GLU
126
n
126
GLU
126
A
SER
127
n
127
SER
127
A
ARG
128
n
128
ARG
128
A
GLN
129
n
129
GLN
129
A
ALA
130
n
130
ALA
130
A
GLN
131
n
131
GLN
131
A
ASP
132
n
132
ASP
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
ARG
135
n
135
ARG
135
A
SER
136
n
136
SER
136
A
TYR
137
n
137
TYR
137
A
GLY
138
n
138
GLY
138
A
ILE
139
n
139
ILE
139
A
PRO
140
n
140
PRO
140
A
TYR
141
n
141
TYR
141
A
ILE
142
n
142
ILE
142
A
GLU
143
n
143
GLU
143
A
THR
144
n
144
THR
144
A
SER
145
n
145
SER
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
THR
148
n
148
THR
148
A
ARG
149
n
149
ARG
149
A
GLN
150
n
150
GLN
150
A
GLY
151
n
151
GLY
151
A
VAL
152
n
152
VAL
152
A
GLU
153
n
153
GLU
153
A
ASP
154
n
154
ASP
154
A
ALA
155
n
155
ALA
155
A
PHE
156
n
156
PHE
156
A
TYR
157
n
157
TYR
157
A
THR
158
n
158
THR
158
A
LEU
159
n
159
LEU
159
A
VAL
160
n
160
VAL
160
A
ARG
161
n
161
ARG
161
A
GLU
162
n
162
GLU
162
A
ILE
163
n
163
ILE
163
A
ARG
164
n
164
ARG
164
A
GLN
165
n
165
GLN
165
A
HIS
166
n
166
HIS
166
A
THR
54
n
1
THR
54
B
SER
55
n
2
SER
55
B
ASN
56
n
3
ASN
56
B
THR
57
n
4
THR
57
B
ILE
58
n
5
ILE
58
B
ARG
59
n
6
ARG
59
B
VAL
60
n
7
VAL
60
B
PHE
61
n
8
PHE
61
B
LEU
62
n
9
LEU
62
B
PRO
63
n
10
PRO
63
B
ASN
64
n
11
ASN
64
B
LYS
65
n
12
LYS
65
B
GLN
66
n
13
GLN
66
B
ARG
67
n
14
ARG
67
B
THR
68
n
15
THR
68
B
VAL
69
n
16
VAL
69
B
VAL
70
n
17
VAL
70
B
ASN
71
n
18
ASN
71
B
VAL
72
n
19
VAL
72
B
ARG
73
n
20
ARG
73
B
ASN
74
n
21
ASN
74
B
GLY
75
n
22
GLY
75
B
MET
76
n
23
MET
76
B
SER
77
n
24
SER
77
B
LEU
78
n
25
LEU
78
B
HIS
79
n
26
HIS
79
B
ASP
80
n
27
ASP
80
B
CYS
81
n
28
CYS
81
B
LEU
82
n
29
LEU
82
B
MET
83
n
30
MET
83
B
LYS
84
n
31
LYS
84
B
ALA
85
n
32
ALA
85
B
LEU
86
n
33
LEU
86
B
LYS
87
n
34
LYS
87
B
VAL
88
n
35
VAL
88
B
ARG
89
n
36
ARG
89
B
GLY
90
n
37
GLY
90
B
LEU
91
n
38
LEU
91
B
GLN
92
n
39
GLN
92
B
PRO
93
n
40
PRO
93
B
GLU
94
n
41
GLU
94
B
CYS
95
n
42
CYS
95
B
CYS
96
n
43
CYS
96
B
ALA
97
n
44
ALA
97
B
VAL
98
n
45
VAL
98
B
PHE
99
n
46
PHE
99
B
ARG
100
n
47
ARG
100
B
LEU
101
n
48
LEU
101
B
LEU
102
n
49
LEU
102
B
HIS
103
n
50
HIS
103
B
GLU
104
n
51
GLU
104
B
HIS
105
n
52
HIS
105
B
LYS
106
n
53
LYS
106
B
GLY
107
n
54
GLY
107
B
LYS
108
n
55
LYS
108
B
LYS
109
n
56
LYS
109
B
ALA
110
n
57
ALA
110
B
ARG
111
n
58
ARG
111
B
LEU
112
n
59
LEU
112
B
ASP
113
n
60
ASP
113
B
TRP
114
n
61
TRP
114
B
ASN
115
n
62
ASN
115
B
THR
116
n
63
THR
116
B
ASP
117
n
64
ASP
117
B
ALA
118
n
65
ALA
118
B
ALA
119
n
66
ALA
119
B
SER
120
n
67
SER
120
B
LEU
121
n
68
LEU
121
B
ILE
122
n
69
ILE
122
B
GLY
123
n
70
GLY
123
B
GLU
124
n
71
GLU
124
B
GLU
125
n
72
GLU
125
B
LEU
126
n
73
LEU
126
B
GLN
127
n
74
GLN
127
B
VAL
128
n
75
VAL
128
B
ASP
129
n
76
ASP
129
B
PHE
130
n
77
PHE
130
B
LEU
131
n
78
LEU
131
B
0.9234
-1.0697
-0.1429
2.5696
0.9771
2.2589
0.1322
0.2547
0.2298
-0.6232
-0.1982
0.0351
-0.4634
-0.2926
0.0735
0.3970
0.0934
-0.0086
0.3040
0.0420
0.3218
refined
36.7956
0.1928
-16.3778
X-RAY DIFFRACTION
3.4808
0.8697
-0.2575
2.0424
0.5023
0.9376
0.1078
1.2138
-0.3911
-1.1644
0.2260
-1.1516
-0.0943
0.8422
-0.1308
0.7492
0.2684
0.2087
0.7568
0.0531
0.4759
refined
48.9844
-5.7599
-23.9836
X-RAY DIFFRACTION
2.9213
-0.5191
-0.3272
3.5016
0.5335
2.0949
0.1666
0.0395
0.1641
-0.1080
-0.0550
-0.3898
-0.1722
0.2145
-0.0668
0.2360
-0.0079
0.0478
0.2162
-0.0017
0.2827
refined
45.7901
-8.3891
-8.1924
X-RAY DIFFRACTION
3.2140
1.0263
0.3337
4.6477
2.0383
4.7943
-0.1221
-0.0255
-0.0735
0.1049
0.3614
-0.4437
0.2494
0.0500
-0.1350
0.7709
0.2019
-0.0045
0.5302
0.1137
0.3419
refined
36.8981
-0.1013
-31.7044
X-RAY DIFFRACTION
6.1090
-0.7345
0.5411
2.5402
0.3607
0.1222
-0.3261
-0.8296
-0.9536
0.6076
0.1497
0.1702
0.5729
0.0242
-0.1288
0.9538
-0.1001
-0.0589
1.1211
0.0300
0.5980
refined
27.3695
-9.7170
-37.3794
X-RAY DIFFRACTION
1.2207
-0.2321
-0.4895
1.2210
-0.8069
3.6684
-0.3260
0.1682
0.0599
-0.5516
0.0688
0.4603
0.1520
-1.2648
-0.1289
0.7658
0.2638
-0.0861
0.8566
0.1589
0.4139
refined
26.5713
-0.9302
-28.9974
X-RAY DIFFRACTION
1.4201
-0.0514
0.4480
1.3922
1.6322
4.0042
-0.0737
-0.0767
0.5309
-0.4609
-0.0161
0.1662
-1.2581
-0.1085
0.0806
0.9664
0.3934
-0.0540
0.7230
0.0802
0.3330
refined
32.4079
7.8645
-37.6765
X-RAY DIFFRACTION
3.9756
-1.1067
-1.5633
2.7113
0.7477
1.6414
-0.2562
0.3713
0.5799
0.0968
0.4346
0.1735
0.0001
-1.2304
-0.1396
0.9037
0.2372
-0.1525
0.8030
0.1539
0.4423
refined
30.1504
4.1186
-39.1303
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resid 1 through 57 )
X-RAY DIFFRACTION
2
chain 'A' and (resid 58 through 74 )
X-RAY DIFFRACTION
3
chain 'A' and (resid 75 through 166 )
X-RAY DIFFRACTION
4
chain 'B' and (resid 54 through 71 )
X-RAY DIFFRACTION
5
chain 'B' and (resid 72 through 77 )
X-RAY DIFFRACTION
6
chain 'B' and (resid 78 through 89 )
X-RAY DIFFRACTION
7
chain 'B' and (resid 90 through 108 )
X-RAY DIFFRACTION
8
chain 'B' and (resid 109 through 131 )
author_defined_assembly
2
dimeric
A
SER
17
A
OG
SER
17
1_555
A
MG
203
E
MG
MG
1_555
A
THR
35
A
OG1
THR
35
1_555
84.5
A
SER
17
A
OG
SER
17
1_555
A
MG
203
E
MG
MG
1_555
A
GNP
201
C
O2G
GNP
1_555
174.7
A
THR
35
A
OG1
THR
35
1_555
A
MG
203
E
MG
MG
1_555
A
GNP
201
C
O2G
GNP
1_555
90.2
A
SER
17
A
OG
SER
17
1_555
A
MG
203
E
MG
MG
1_555
A
GNP
201
C
O2B
GNP
1_555
93.3
A
THR
35
A
OG1
THR
35
1_555
A
MG
203
E
MG
MG
1_555
A
GNP
201
C
O2B
GNP
1_555
177.1
A
GNP
201
C
O2G
GNP
1_555
A
MG
203
E
MG
MG
1_555
A
GNP
201
C
O2B
GNP
1_555
92.0
A
SER
17
A
OG
SER
17
1_555
A
MG
203
E
MG
MG
1_555
A
HOH
335
I
O
HOH
1_555
92.6
A
THR
35
A
OG1
THR
35
1_555
A
MG
203
E
MG
MG
1_555
A
HOH
335
I
O
HOH
1_555
89.9
A
GNP
201
C
O2G
GNP
1_555
A
MG
203
E
MG
MG
1_555
A
HOH
335
I
O
HOH
1_555
87.4
A
GNP
201
C
O2B
GNP
1_555
A
MG
203
E
MG
MG
1_555
A
HOH
335
I
O
HOH
1_555
88.3
A
SER
17
A
OG
SER
17
1_555
A
MG
203
E
MG
MG
1_555
A
HOH
344
I
O
HOH
1_555
86.5
A
THR
35
A
OG1
THR
35
1_555
A
MG
203
E
MG
MG
1_555
A
HOH
344
I
O
HOH
1_555
98.7
A
GNP
201
C
O2G
GNP
1_555
A
MG
203
E
MG
MG
1_555
A
HOH
344
I
O
HOH
1_555
94.3
A
GNP
201
C
O2B
GNP
1_555
A
MG
203
E
MG
MG
1_555
A
HOH
344
I
O
HOH
1_555
83.0
A
HOH
335
I
O
HOH
1_555
A
MG
203
E
MG
MG
1_555
A
HOH
344
I
O
HOH
1_555
171.2
A
ASP
107
A
O
ASP
107
1_555
A
CA
202
D
CA
CA
1_555
A
TYR
137
A
O
TYR
137
1_555
151.0
A
ASP
107
A
O
ASP
107
1_555
A
CA
202
D
CA
CA
1_555
A
ACT
205
G
O
ACT
1_555
73.6
A
TYR
137
A
O
TYR
137
1_555
A
CA
202
D
CA
CA
1_555
A
ACT
205
G
O
ACT
1_555
133.7
A
ASP
107
A
O
ASP
107
1_555
A
CA
202
D
CA
CA
1_555
A
ACT
205
G
OXT
ACT
1_555
98.1
A
TYR
137
A
O
TYR
137
1_555
A
CA
202
D
CA
CA
1_555
A
ACT
205
G
OXT
ACT
1_555
94.5
A
ACT
205
G
O
ACT
1_555
A
CA
202
D
CA
CA
1_555
A
ACT
205
G
OXT
ACT
1_555
53.3
A
ASP
107
A
O
ASP
107
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
345
I
O
HOH
1_555
110.6
A
TYR
137
A
O
TYR
137
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
345
I
O
HOH
1_555
92.2
A
ACT
205
G
O
ACT
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
345
I
O
HOH
1_555
67.3
A
ACT
205
G
OXT
ACT
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
345
I
O
HOH
1_555
101.0
A
ASP
107
A
O
ASP
107
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
346
I
O
HOH
1_555
86.1
A
TYR
137
A
O
TYR
137
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
346
I
O
HOH
1_555
75.3
A
ACT
205
G
O
ACT
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
346
I
O
HOH
1_555
142.0
A
ACT
205
G
OXT
ACT
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
346
I
O
HOH
1_555
164.1
A
HOH
345
I
O
HOH
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
346
I
O
HOH
1_555
91.7
A
ASP
107
A
O
ASP
107
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
347
I
O
HOH
1_555
83.9
A
TYR
137
A
O
TYR
137
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
347
I
O
HOH
1_555
70.3
A
ACT
205
G
O
ACT
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
347
I
O
HOH
1_555
131.3
A
ACT
205
G
OXT
ACT
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
347
I
O
HOH
1_555
89.4
A
HOH
345
I
O
HOH
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
347
I
O
HOH
1_555
160.4
A
HOH
346
I
O
HOH
1_555
A
CA
202
D
CA
CA
1_555
A
HOH
347
I
O
HOH
1_555
75.8
A
HOH
332
I
O
HOH
1_555
A
CA
204
F
CA
CA
1_555
A
HOH
333
I
O
HOH
1_555
76.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
44
A
N
VAL
44
A
O
CYS
51
A
O
CYS
51
A
O
LEU
56
A
O
LEU
56
A
N
LEU
6
A
N
LEU
6
A
N
VAL
7
A
N
VAL
7
A
O
LEU
79
A
O
LEU
79
A
N
PHE
82
A
N
PHE
82
A
O
ASN
116
A
O
ASN
116
A
N
LEU
113
A
N
LEU
113
A
O
ILE
142
A
O
ILE
142
B
O
THR
68
B
O
THR
15
B
N
VAL
60
B
N
VAL
7
B
N
ARG
59
B
N
ARG
6
B
O
LEU
126
B
O
LEU
73
B
O
GLN
127
B
O
GLN
74
B
N
PHE
99
B
N
PHE
46
B
N
ARG
100
B
N
ARG
47
B
O
ALA
110
B
O
ALA
57
1
A
CA
204
F
CA
1
A
HOH
363
I
HOH
1
B
HOH
208
J
HOH
1
A
CG
GLU
62
A
CG
GLU
62
1
Y
1
A
CD
GLU
62
A
CD
GLU
62
1
Y
1
A
OE1
GLU
62
A
OE1
GLU
62
1
Y
1
A
OE2
GLU
62
A
OE2
GLU
62
1
Y
1
A
CG
GLU
63
A
CG
GLU
63
1
Y
1
A
CD
GLU
63
A
CD
GLU
63
1
Y
1
A
OE1
GLU
63
A
OE1
GLU
63
1
Y
1
A
OE2
GLU
63
A
OE2
GLU
63
1
Y
1
A
CG
MET
67
A
CG
MET
67
1
Y
1
A
SD
MET
67
A
SD
MET
67
1
Y
1
A
CE
MET
67
A
CE
MET
67
1
Y
1
A
CG
GLN
70
A
CG
GLN
70
1
Y
1
A
CD
GLN
70
A
CD
GLN
70
1
Y
1
A
OE1
GLN
70
A
OE1
GLN
70
1
Y
1
A
NE2
GLN
70
A
NE2
GLN
70
1
Y
1
A
CG
ARG
73
A
CG
ARG
73
1
Y
1
A
CD
ARG
73
A
CD
ARG
73
1
Y
1
A
NE
ARG
73
A
NE
ARG
73
1
Y
1
A
CZ
ARG
73
A
CZ
ARG
73
1
Y
1
A
NH1
ARG
73
A
NH1
ARG
73
1
Y
1
A
NH2
ARG
73
A
NH2
ARG
73
1
Y
1
B
CG
ASN
74
B
CG
ASN
21
1
Y
1
B
OD1
ASN
74
B
OD1
ASN
21
1
Y
1
B
ND2
ASN
74
B
ND2
ASN
21
1
Y
1
B
CG
GLN
92
B
CG
GLN
39
1
Y
1
B
CD
GLN
92
B
CD
GLN
39
1
Y
1
B
OE1
GLN
92
B
OE1
GLN
39
1
Y
1
B
NE2
GLN
92
B
NE2
GLN
39
1
Y
1
B
CG
GLU
94
B
CG
GLU
41
1
Y
1
B
CD
GLU
94
B
CD
GLU
41
1
Y
1
B
OE1
GLU
94
B
OE1
GLU
41
1
Y
1
B
OE2
GLU
94
B
OE2
GLU
41
1
Y
1
B
CG
GLU
104
B
CG
GLU
51
1
Y
1
B
CD
GLU
104
B
CD
GLU
51
1
Y
1
B
OE1
GLU
104
B
OE1
GLU
51
1
Y
1
B
OE2
GLU
104
B
OE2
GLU
51
1
Y
1
B
CG
HIS
105
B
CG
HIS
52
1
Y
1
B
ND1
HIS
105
B
ND1
HIS
52
1
Y
1
B
CD2
HIS
105
B
CD2
HIS
52
1
Y
1
B
CE1
HIS
105
B
CE1
HIS
52
1
Y
1
B
NE2
HIS
105
B
NE2
HIS
52
1
Y
1
B
CG
LYS
106
B
CG
LYS
53
1
Y
1
B
CD
LYS
106
B
CD
LYS
53
1
Y
1
B
CE
LYS
106
B
CE
LYS
53
1
Y
1
B
NZ
LYS
106
B
NZ
LYS
53
1
Y
1
B
CG
LYS
108
B
CG
LYS
55
1
Y
1
B
CD
LYS
108
B
CD
LYS
55
1
Y
1
B
CE
LYS
108
B
CE
LYS
55
1
Y
1
B
NZ
LYS
108
B
NZ
LYS
55
1
Y
1
A
TYR
64
A
TYR
64
1
Y
1
A
SER
65
A
SER
65
1
Y
1
A
GLU
62
51.52
-149.63
1
A
ALA
122
-83.76
45.68
1
B
ASN
56
-106.89
73.75
1
B
GLU
94
-80.18
47.66
1
B
CYS
95
-155.64
1.89
7.1703
0.0000
-0.0000
7.1703
-0.0000
-14.3406
0.2294
0.1809
0.1858
2.45
32.368
1628
16133
10.09
97.08
0.25
1
1.34
24.19
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
2.45
32.368
82
2004
47
0
1875
0.008
1956
0.680
2662
14.171
711
0.040
305
0.003
335
0.2884
0.2724
2.5178
112
930
77.00
0.2859
0.2444
2.5991
125
1138
92.00
0.3150
0.2416
2.6919
135
1194
98.00
0.2771
0.2275
2.7996
136
1225
99.00
0.2585
0.2074
2.9270
137
1212
99.00
0.2780
0.1923
3.0812
139
1238
100.00
0.2610
0.1875
3.2740
137
1223
100.00
0.2133
0.1720
3.5266
136
1234
99.00
0.2208
0.1563
3.8809
139
1244
100.00
0.1776
0.1452
4.4413
140
1255
100.00
0.2138
0.1568
5.5908
138
1279
100.00
0.2179
0.1929
32.3708
154
1333
100.00
2.45
32.4
4G0N
16218
16218
3
3
0.15
1
8.9
model building
PHENIX
refinement
PHENIX
(phenix.refine: 1.7.3_928)
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHENIX
Crystal Structure of wt H-Ras-GppNHp bound to the RBD of Raf Kinase
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
4
N
N
6
N
N
7
N
N
8
N
N
8
N
N
A
GLY
15
A
GLY
15
HELX_P
A
ASN
26
A
ASN
26
1
1
12
A
MET
67
A
MET
67
HELX_P
A
GLY
75
A
GLY
75
1
2
9
A
ASN
86
A
ASN
86
HELX_P
A
ASP
105
A
ASP
105
1
3
20
A
GLU
126
A
GLU
126
HELX_P
A
GLY
138
A
GLY
138
1
4
13
A
GLY
151
A
GLY
151
HELX_P
A
HIS
166
A
HIS
166
1
5
16
B
SER
77
B
SER
24
HELX_P
B
VAL
88
B
VAL
35
1
6
12
B
GLN
92
B
GLN
39
HELX_P
B
GLU
94
B
GLU
41
5
7
3
B
ASP
117
B
ASP
64
HELX_P
B
ILE
122
B
ILE
69
5
8
6
metalc
2.041
A
SER
17
A
OG
SER
17
1_555
A
MG
203
E
MG
MG
1_555
metalc
1.992
A
THR
35
A
OG1
THR
35
1_555
A
MG
203
E
MG
MG
1_555
metalc
2.387
A
ASP
107
A
O
ASP
107
1_555
A
CA
202
D
CA
CA
1_555
metalc
2.356
A
TYR
137
A
O
TYR
137
1_555
A
CA
202
D
CA
CA
1_555
metalc
1.891
A
GNP
201
C
O2G
GNP
1_555
A
MG
203
E
MG
MG
1_555
metalc
1.996
A
GNP
201
C
O2B
GNP
1_555
A
MG
203
E
MG
MG
1_555
metalc
2.212
A
CA
202
D
CA
CA
1_555
A
ACT
205
G
O
ACT
1_555
metalc
2.474
A
CA
202
D
CA
CA
1_555
A
ACT
205
G
OXT
ACT
1_555
metalc
2.373
A
CA
202
D
CA
CA
1_555
A
HOH
345
I
O
HOH
1_555
metalc
2.433
A
CA
202
D
CA
CA
1_555
A
HOH
346
I
O
HOH
1_555
metalc
2.944
A
CA
202
D
CA
CA
1_555
A
HOH
347
I
O
HOH
1_555
metalc
2.051
A
MG
203
E
MG
MG
1_555
A
HOH
335
I
O
HOH
1_555
metalc
2.059
A
MG
203
E
MG
MG
1_555
A
HOH
344
I
O
HOH
1_555
metalc
2.440
A
CA
204
F
CA
CA
1_555
A
HOH
332
I
O
HOH
1_555
metalc
2.542
A
CA
204
F
CA
CA
1_555
A
HOH
333
I
O
HOH
1_555
PROTEIN BINDING/TRANSFERASE
H-Ras, Ras, Raf kinase, Raf, GTPase, allosteric regulation, intrinsic hydrolysis, protein-protein interaction, Ras/Raf/MEK/ERK, kinase, GTP binding, PROTEIN BINDING-TRANSFERASE complex
RASH_HUMAN
UNP
1
1
P01112
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC
VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV
REIRQH
RAF1_HUMAN
UNP
2
54
P04049
TSNTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDFL
1
166
4G0N
1
166
P01112
A
1
1
166
54
131
4G0N
54
131
P04049
B
2
1
78
6
5
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ASP
38
A
ASP
38
A
ILE
46
A
ILE
46
A
GLU
49
A
GLU
49
A
ASP
57
A
ASP
57
A
THR
2
A
THR
2
A
VAL
9
A
VAL
9
A
GLY
77
A
GLY
77
A
ALA
83
A
ALA
83
A
MET
111
A
MET
111
A
ASN
116
A
ASN
116
A
TYR
141
A
TYR
141
A
GLU
143
A
GLU
143
B
GLN
66
B
GLN
13
B
ASN
71
B
ASN
18
B
THR
57
B
THR
4
B
LEU
62
B
LEU
9
B
GLU
125
B
GLU
72
B
PHE
130
B
PHE
77
B
CYS
96
B
CYS
43
B
LEU
101
B
LEU
48
B
LYS
109
B
LYS
56
B
ARG
111
B
ARG
58
BINDING SITE FOR RESIDUE GNP A 201
A
GNP
201
Software
28
BINDING SITE FOR RESIDUE CA A 202
A
CA
202
Software
6
BINDING SITE FOR RESIDUE MG A 203
A
MG
203
Software
6
BINDING SITE FOR RESIDUE CA A 204
A
CA
204
Software
6
BINDING SITE FOR RESIDUE ACT A 205
A
ACT
205
Software
8
BINDING SITE FOR RESIDUE DTU A 206
A
DTU
206
Software
5
A
GLY
12
A
GLY
12
28
1_555
A
GLY
13
A
GLY
13
28
1_555
A
VAL
14
A
VAL
14
28
1_555
A
GLY
15
A
GLY
15
28
1_555
A
LYS
16
A
LYS
16
28
1_555
A
SER
17
A
SER
17
28
1_555
A
ALA
18
A
ALA
18
28
1_555
A
PHE
28
A
PHE
28
28
1_555
A
VAL
29
A
VAL
29
28
1_555
A
ASP
30
A
ASP
30
28
1_555
A
GLU
31
A
GLU
31
28
1_555
A
PRO
34
A
PRO
34
28
1_555
A
THR
35
A
THR
35
28
1_555
A
GLY
60
A
GLY
60
28
1_555
A
ASN
116
A
ASN
116
28
1_555
A
LYS
117
A
LYS
117
28
1_555
A
ASP
119
A
ASP
119
28
1_555
A
LEU
120
A
LEU
120
28
1_555
A
SER
145
A
SER
145
28
1_555
A
ALA
146
A
ALA
146
28
1_555
A
LYS
147
A
LYS
147
28
1_555
A
MG
203
E
MG
28
1_555
A
HOH
301
I
HOH
28
1_555
A
HOH
317
I
HOH
28
1_555
A
HOH
335
I
HOH
28
1_555
A
HOH
344
I
HOH
28
1_555
A
HOH
364
I
HOH
28
1_555
A
HOH
365
I
HOH
28
1_555
A
ASP
107
A
ASP
107
6
1_555
A
TYR
137
A
TYR
137
6
1_555
A
ACT
205
G
ACT
6
1_555
A
HOH
345
I
HOH
6
1_555
A
HOH
346
I
HOH
6
1_555
A
HOH
347
I
HOH
6
1_555
A
SER
17
A
SER
17
6
1_555
A
THR
35
A
THR
35
6
1_555
A
ASP
57
A
ASP
57
6
1_555
A
GNP
201
C
GNP
6
1_555
A
HOH
335
I
HOH
6
1_555
A
HOH
344
I
HOH
6
1_555
A
HOH
332
I
HOH
6
2_545
A
HOH
332
I
HOH
6
1_555
A
HOH
332
I
HOH
6
3_655
A
HOH
333
I
HOH
6
3_655
A
HOH
333
I
HOH
6
2_545
A
HOH
333
I
HOH
6
1_555
A
ARG
97
A
ARG
97
8
1_555
A
ASP
107
A
ASP
107
8
1_555
A
ASP
108
A
ASP
108
8
1_555
A
VAL
109
A
VAL
109
8
1_555
A
MET
111
A
MET
111
8
1_555
A
TYR
137
A
TYR
137
8
1_555
A
CA
202
D
CA
8
1_555
A
HOH
345
I
HOH
8
1_555
A
ARG
68
A
ARG
68
5
1_555
A
ASP
92
A
ASP
92
5
1_555
A
GLN
95
A
GLN
95
5
1_555
A
TYR
96
A
TYR
96
5
1_555
A
GLN
99
A
GLN
99
5
1_555
150
P 3 2 1