0.012324
0.007115
0.000000
0.000000
0.014231
0.000000
0.000000
0.000000
0.004350
0.000000
0.000000
0.000000
Wang, F.
Zhou, M.
Singh, S.
Bingman, C.A.
Thorson, J.S.
Phillips Jr., G.N.
Enzyme Discovery for Natural Product Biosynthesis (NatPro)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
81.141
81.141
229.906
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C10 H16 N2 O11 P2
402.188
THYMIDINE-5'-DIPHOSPHATE
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
SE
N
238
N
C
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
S
P
N
349
N
O
N
350
N
O
N
351
N
O
N
352
N
P
N
353
N
O
N
354
N
O
N
355
N
O
N
356
N
O
N
357
N
C
N
358
R
C
N
359
N
O
N
360
S
C
N
361
N
O
N
362
N
C
N
363
R
C
Y
364
N
N
Y
365
N
C
N
366
N
O
Y
367
N
N
Y
368
N
C
N
369
N
O
Y
370
N
C
N
371
N
C
Y
372
N
C
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
N
400
N
O
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
sing
Y
363
N
sing
N
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
doub
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
Y
387
N
doub
Y
388
N
sing
Y
389
N
sing
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
US
Proteins
PSFGEY
0867
0887-3585
81
1277
1282
10.1002/prot.24289
23526584
Crystal structure of SsfS6, the putative C-glycosyltransferase involved in SF2575 biosynthesis.
2013
10.2210/pdb4g2t/pdb
pdb_00004g2t
100
1
CCD
2012-06-10
MARMOSAIC 300 mm CCD
Kohzu
SINGLE WAVELENGTH
M
x-ray
1
1.12715
1.0
21-ID-D
APS
1.12715
SYNCHROTRON
APS BEAMLINE 21-ID-D
43086.855
SsfS6
1
man
polymer
402.188
THYMIDINE-5'-DIPHOSPHATE
1
syn
non-polymer
18.015
water
67
nat
water
no
yes
HHHHHSSGVPRGSH(MSE)RILVIAGCSEGFV(MSE)PLVPLSWALRAAGHEVLVAASEN(MSE)GPTVTGAGLPFAPTC
PSLD(MSE)PEVLSWDREGNRTT(MSE)PREEKPLLEHIGRGYGRLVLR(MSE)RDEALALAERWKPDLVLTETYSLTGP
LVAATLGIPWIEQSIRLASPELIKSAGVGELAPELAELGLTDFPDPLLSIDVCPPS(MSE)EAQPKPGTTK(MSE)RYVP
YNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAA
GQFPLSAI(MSE)PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARI
RDDSSYVGNARRLAAE(MSE)ATLPTPADIVRLIEQA
HHHHHSSGVPRGSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWD
REGNRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIK
SAGVGELAPELAELGLTDFPDPLLSIDVCPPSMEAQPKPGTTKMRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLP
NTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIMPACDVVVHHGGHGTTLTCLSEGV
PQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGNARRLAAEMATLPTPADIVRLIEQA
A
NatPro-GO.120792
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
ssfS6
746675
Streptomyces sp. SF2575
562
Escherichia coli
1
2.54
51.49
VAPOR DIFFUSION, SITTING DROP
8.2
Protein Solution (11.4 mg/ml SsfS6 protein, 50mM Tris pH 8.0) mixed in a 1:1 ratio with the well solution (1.13~1.26 M Sodium phosphate monobasic monohydrate / Potassium phosphate dibasic, pH 8.2) Cryoprotected with 100% Paratone-N, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
Enzyme Discovery for Natural Product Biosynthesis
NatPro
PSI:Biology
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Derived calculations
Database references
Database references
Refinement description
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2012-07-25
1
1
2012-10-24
1
2
2013-05-01
1
3
2013-07-03
1
4
2017-11-15
1
5
2023-09-13
1
6
2023-12-06
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
Streptomyces sp. SF2575 glycosyltransferase SsfS6
Y
RCSB
Y
RCSB
2012-07-12
REL
REL
TYD
THYMIDINE-5'-DIPHOSPHATE
HOH
water
4FZR
PDB ENTRY 4FZR
PDB
experimental model
TYD
1
2
TYD
TYD
401
A
HOH
1
3
HOH
HOH
501
A
HOH
2
3
HOH
HOH
502
A
HOH
3
3
HOH
HOH
503
A
HOH
4
3
HOH
HOH
504
A
HOH
5
3
HOH
HOH
505
A
HOH
6
3
HOH
HOH
506
A
HOH
7
3
HOH
HOH
507
A
HOH
8
3
HOH
HOH
508
A
HOH
9
3
HOH
HOH
509
A
HOH
10
3
HOH
HOH
510
A
HOH
11
3
HOH
HOH
511
A
HOH
12
3
HOH
HOH
512
A
HOH
13
3
HOH
HOH
513
A
HOH
14
3
HOH
HOH
514
A
HOH
15
3
HOH
HOH
515
A
HOH
17
3
HOH
HOH
516
A
HOH
18
3
HOH
HOH
517
A
HOH
19
3
HOH
HOH
518
A
HOH
21
3
HOH
HOH
519
A
HOH
22
3
HOH
HOH
520
A
HOH
23
3
HOH
HOH
521
A
HOH
24
3
HOH
HOH
522
A
HOH
25
3
HOH
HOH
523
A
HOH
26
3
HOH
HOH
524
A
HOH
27
3
HOH
HOH
525
A
HOH
28
3
HOH
HOH
526
A
HOH
29
3
HOH
HOH
527
A
HOH
30
3
HOH
HOH
528
A
HOH
31
3
HOH
HOH
529
A
HOH
32
3
HOH
HOH
530
A
HOH
33
3
HOH
HOH
531
A
HOH
35
3
HOH
HOH
532
A
HOH
36
3
HOH
HOH
533
A
HOH
37
3
HOH
HOH
534
A
HOH
38
3
HOH
HOH
535
A
HOH
39
3
HOH
HOH
536
A
HOH
41
3
HOH
HOH
537
A
HOH
42
3
HOH
HOH
538
A
HOH
43
3
HOH
HOH
539
A
HOH
44
3
HOH
HOH
540
A
HOH
45
3
HOH
HOH
541
A
HOH
46
3
HOH
HOH
542
A
HOH
47
3
HOH
HOH
543
A
HOH
48
3
HOH
HOH
544
A
HOH
49
3
HOH
HOH
545
A
HOH
50
3
HOH
HOH
546
A
HOH
51
3
HOH
HOH
547
A
HOH
52
3
HOH
HOH
548
A
HOH
53
3
HOH
HOH
549
A
HOH
54
3
HOH
HOH
550
A
HOH
55
3
HOH
HOH
551
A
HOH
56
3
HOH
HOH
552
A
HOH
57
3
HOH
HOH
553
A
HOH
58
3
HOH
HOH
554
A
HOH
59
3
HOH
HOH
555
A
HOH
60
3
HOH
HOH
556
A
HOH
61
3
HOH
HOH
557
A
HOH
62
3
HOH
HOH
558
A
HOH
63
3
HOH
HOH
559
A
HOH
64
3
HOH
HOH
560
A
HOH
65
3
HOH
HOH
561
A
HOH
66
3
HOH
HOH
562
A
HOH
67
3
HOH
HOH
563
A
HOH
68
3
HOH
HOH
564
A
HOH
69
3
HOH
HOH
565
A
HOH
70
3
HOH
HOH
566
A
HOH
71
3
HOH
HOH
567
A
n
1
-13
A
n
2
-12
A
n
3
-11
A
n
4
-10
A
n
5
-9
A
n
6
-8
A
n
7
-7
A
n
8
-6
A
n
9
-5
A
n
10
-4
A
n
11
-3
A
n
12
-2
A
n
13
-1
A
HIS
0
n
14
HIS
0
A
MSE
1
n
15
MSE
1
A
ARG
2
n
16
ARG
2
A
ILE
3
n
17
ILE
3
A
LEU
4
n
18
LEU
4
A
VAL
5
n
19
VAL
5
A
ILE
6
n
20
ILE
6
A
ALA
7
n
21
ALA
7
A
GLY
8
n
22
GLY
8
A
CYS
9
n
23
CYS
9
A
SER
10
n
24
SER
10
A
GLU
11
n
25
GLU
11
A
GLY
12
n
26
GLY
12
A
PHE
13
n
27
PHE
13
A
VAL
14
n
28
VAL
14
A
MSE
15
n
29
MSE
15
A
PRO
16
n
30
PRO
16
A
LEU
17
n
31
LEU
17
A
VAL
18
n
32
VAL
18
A
PRO
19
n
33
PRO
19
A
LEU
20
n
34
LEU
20
A
SER
21
n
35
SER
21
A
TRP
22
n
36
TRP
22
A
ALA
23
n
37
ALA
23
A
LEU
24
n
38
LEU
24
A
ARG
25
n
39
ARG
25
A
ALA
26
n
40
ALA
26
A
ALA
27
n
41
ALA
27
A
GLY
28
n
42
GLY
28
A
HIS
29
n
43
HIS
29
A
GLU
30
n
44
GLU
30
A
VAL
31
n
45
VAL
31
A
LEU
32
n
46
LEU
32
A
VAL
33
n
47
VAL
33
A
ALA
34
n
48
ALA
34
A
ALA
35
n
49
ALA
35
A
SER
36
n
50
SER
36
A
GLU
37
n
51
GLU
37
A
ASN
38
n
52
ASN
38
A
MSE
39
n
53
MSE
39
A
GLY
40
n
54
GLY
40
A
PRO
41
n
55
PRO
41
A
THR
42
n
56
THR
42
A
VAL
43
n
57
VAL
43
A
THR
44
n
58
THR
44
A
GLY
45
n
59
GLY
45
A
ALA
46
n
60
ALA
46
A
GLY
47
n
61
GLY
47
A
LEU
48
n
62
LEU
48
A
PRO
49
n
63
PRO
49
A
PHE
50
n
64
PHE
50
A
ALA
51
n
65
ALA
51
A
PRO
52
n
66
PRO
52
A
THR
53
n
67
THR
53
A
CYS
54
n
68
CYS
54
A
PRO
55
n
69
PRO
55
A
SER
56
n
70
SER
56
A
LEU
57
n
71
LEU
57
A
ASP
58
n
72
ASP
58
A
MSE
59
n
73
MSE
59
A
PRO
60
n
74
PRO
60
A
GLU
61
n
75
GLU
61
A
VAL
62
n
76
VAL
62
A
LEU
63
n
77
LEU
63
A
SER
64
n
78
SER
64
A
TRP
65
n
79
TRP
65
A
ASP
66
n
80
ASP
66
A
ARG
67
n
81
ARG
67
A
GLU
68
n
82
GLU
68
A
GLY
69
n
83
GLY
69
A
ASN
70
n
84
ASN
70
A
ARG
71
n
85
ARG
71
A
THR
72
n
86
THR
72
A
THR
73
n
87
THR
73
A
MSE
74
n
88
MSE
74
A
PRO
75
n
89
PRO
75
A
ARG
76
n
90
ARG
76
A
GLU
77
n
91
GLU
77
A
GLU
78
n
92
GLU
78
A
LYS
79
n
93
LYS
79
A
PRO
80
n
94
PRO
80
A
LEU
81
n
95
LEU
81
A
LEU
82
n
96
LEU
82
A
GLU
83
n
97
GLU
83
A
HIS
84
n
98
HIS
84
A
ILE
85
n
99
ILE
85
A
GLY
86
n
100
GLY
86
A
ARG
87
n
101
ARG
87
A
GLY
88
n
102
GLY
88
A
TYR
89
n
103
TYR
89
A
GLY
90
n
104
GLY
90
A
ARG
91
n
105
ARG
91
A
LEU
92
n
106
LEU
92
A
VAL
93
n
107
VAL
93
A
LEU
94
n
108
LEU
94
A
ARG
95
n
109
ARG
95
A
MSE
96
n
110
MSE
96
A
ARG
97
n
111
ARG
97
A
ASP
98
n
112
ASP
98
A
GLU
99
n
113
GLU
99
A
ALA
100
n
114
ALA
100
A
LEU
101
n
115
LEU
101
A
ALA
102
n
116
ALA
102
A
LEU
103
n
117
LEU
103
A
ALA
104
n
118
ALA
104
A
GLU
105
n
119
GLU
105
A
ARG
106
n
120
ARG
106
A
TRP
107
n
121
TRP
107
A
LYS
108
n
122
LYS
108
A
PRO
109
n
123
PRO
109
A
ASP
110
n
124
ASP
110
A
LEU
111
n
125
LEU
111
A
VAL
112
n
126
VAL
112
A
LEU
113
n
127
LEU
113
A
THR
114
n
128
THR
114
A
GLU
115
n
129
GLU
115
A
THR
116
n
130
THR
116
A
TYR
117
n
131
TYR
117
A
SER
118
n
132
SER
118
A
LEU
119
n
133
LEU
119
A
THR
120
n
134
THR
120
A
GLY
121
n
135
GLY
121
A
PRO
122
n
136
PRO
122
A
LEU
123
n
137
LEU
123
A
VAL
124
n
138
VAL
124
A
ALA
125
n
139
ALA
125
A
ALA
126
n
140
ALA
126
A
THR
127
n
141
THR
127
A
LEU
128
n
142
LEU
128
A
GLY
129
n
143
GLY
129
A
ILE
130
n
144
ILE
130
A
PRO
131
n
145
PRO
131
A
TRP
132
n
146
TRP
132
A
ILE
133
n
147
ILE
133
A
GLU
134
n
148
GLU
134
A
GLN
135
n
149
GLN
135
A
SER
136
n
150
SER
136
A
ILE
137
n
151
ILE
137
A
ARG
138
n
152
ARG
138
A
LEU
139
n
153
LEU
139
A
ALA
140
n
154
ALA
140
A
SER
141
n
155
SER
141
A
PRO
142
n
156
PRO
142
A
GLU
143
n
157
GLU
143
A
LEU
144
n
158
LEU
144
A
ILE
145
n
159
ILE
145
A
LYS
146
n
160
LYS
146
A
SER
147
n
161
SER
147
A
ALA
148
n
162
ALA
148
A
GLY
149
n
163
GLY
149
A
VAL
150
n
164
VAL
150
A
GLY
151
n
165
GLY
151
A
GLU
152
n
166
GLU
152
A
LEU
153
n
167
LEU
153
A
ALA
154
n
168
ALA
154
A
PRO
155
n
169
PRO
155
A
GLU
156
n
170
GLU
156
A
LEU
157
n
171
LEU
157
A
ALA
158
n
172
ALA
158
A
GLU
159
n
173
GLU
159
A
LEU
160
n
174
LEU
160
A
GLY
161
n
175
GLY
161
A
LEU
162
n
176
LEU
162
A
THR
163
n
177
THR
163
A
ASP
164
n
178
ASP
164
A
PHE
165
n
179
PHE
165
A
PRO
166
n
180
PRO
166
A
ASP
167
n
181
ASP
167
A
PRO
168
n
182
PRO
168
A
LEU
169
n
183
LEU
169
A
LEU
170
n
184
LEU
170
A
SER
171
n
185
SER
171
A
ILE
172
n
186
ILE
172
A
ASP
173
n
187
ASP
173
A
VAL
174
n
188
VAL
174
A
CYS
175
n
189
CYS
175
A
PRO
176
n
190
PRO
176
A
PRO
177
n
191
PRO
177
A
SER
178
n
192
SER
178
A
MSE
179
n
193
MSE
179
A
GLU
180
n
194
GLU
180
A
ALA
181
n
195
ALA
181
A
n
196
182
A
n
197
183
A
n
198
184
A
n
199
185
A
GLY
186
n
200
GLY
186
A
THR
187
n
201
THR
187
A
THR
188
n
202
THR
188
A
LYS
189
n
203
LYS
189
A
MSE
190
n
204
MSE
190
A
ARG
191
n
205
ARG
191
A
TYR
192
n
206
TYR
192
A
VAL
193
n
207
VAL
193
A
PRO
194
n
208
PRO
194
A
TYR
195
n
209
TYR
195
A
ASN
196
n
210
ASN
196
A
GLY
197
n
211
GLY
197
A
ARG
198
n
212
ARG
198
A
ASN
199
n
213
ASN
199
A
ASP
200
n
214
ASP
200
A
GLN
201
n
215
GLN
201
A
VAL
202
n
216
VAL
202
A
PRO
203
n
217
PRO
203
A
SER
204
n
218
SER
204
A
TRP
205
n
219
TRP
205
A
VAL
206
n
220
VAL
206
A
PHE
207
n
221
PHE
207
A
GLU
208
n
222
GLU
208
A
GLU
209
n
223
GLU
209
A
ARG
210
n
224
ARG
210
A
LYS
211
n
225
LYS
211
A
GLN
212
n
226
GLN
212
A
PRO
213
n
227
PRO
213
A
ARG
214
n
228
ARG
214
A
LEU
215
n
229
LEU
215
A
CYS
216
n
230
CYS
216
A
LEU
217
n
231
LEU
217
A
THR
218
n
232
THR
218
A
PHE
219
n
233
PHE
219
A
GLY
220
n
234
GLY
220
A
THR
221
n
235
THR
221
A
ARG
222
n
236
ARG
222
A
VAL
223
n
237
VAL
223
A
PRO
224
n
238
PRO
224
A
LEU
225
n
239
LEU
225
A
n
240
226
A
n
241
227
A
n
242
228
A
n
243
229
A
n
244
230
A
n
245
231
A
n
246
232
A
n
247
233
A
n
248
234
A
n
249
235
A
n
250
236
A
LEU
237
n
251
LEU
237
A
LEU
238
n
252
LEU
238
A
GLN
239
n
253
GLN
239
A
ALA
240
n
254
ALA
240
A
LEU
241
n
255
LEU
241
A
SER
242
n
256
SER
242
A
GLN
243
n
257
GLN
243
A
GLU
244
n
258
GLU
244
A
LEU
245
n
259
LEU
245
A
PRO
246
n
260
PRO
246
A
LYS
247
n
261
LYS
247
A
LEU
248
n
262
LEU
248
A
GLY
249
n
263
GLY
249
A
PHE
250
n
264
PHE
250
A
GLU
251
n
265
GLU
251
A
VAL
252
n
266
VAL
252
A
VAL
253
n
267
VAL
253
A
VAL
254
n
268
VAL
254
A
ALA
255
n
269
ALA
255
A
VAL
256
n
270
VAL
256
A
SER
257
n
271
SER
257
A
ASP
258
n
272
ASP
258
A
LYS
259
n
273
LYS
259
A
LEU
260
n
274
LEU
260
A
ALA
261
n
275
ALA
261
A
n
276
262
A
n
277
263
A
n
278
264
A
n
279
265
A
n
280
266
A
n
281
267
A
PRO
268
n
282
PRO
268
A
GLU
269
n
283
GLU
269
A
GLY
270
n
284
GLY
270
A
VAL
271
n
285
VAL
271
A
LEU
272
n
286
LEU
272
A
ALA
273
n
287
ALA
273
A
ALA
274
n
288
ALA
274
A
GLY
275
n
289
GLY
275
A
GLN
276
n
290
GLN
276
A
PHE
277
n
291
PHE
277
A
PRO
278
n
292
PRO
278
A
LEU
279
n
293
LEU
279
A
SER
280
n
294
SER
280
A
ALA
281
n
295
ALA
281
A
ILE
282
n
296
ILE
282
A
MSE
283
n
297
MSE
283
A
PRO
284
n
298
PRO
284
A
ALA
285
n
299
ALA
285
A
CYS
286
n
300
CYS
286
A
ASP
287
n
301
ASP
287
A
VAL
288
n
302
VAL
288
A
VAL
289
n
303
VAL
289
A
VAL
290
n
304
VAL
290
A
HIS
291
n
305
HIS
291
A
HIS
292
n
306
HIS
292
A
GLY
293
n
307
GLY
293
A
GLY
294
n
308
GLY
294
A
HIS
295
n
309
HIS
295
A
GLY
296
n
310
GLY
296
A
THR
297
n
311
THR
297
A
THR
298
n
312
THR
298
A
LEU
299
n
313
LEU
299
A
THR
300
n
314
THR
300
A
CYS
301
n
315
CYS
301
A
LEU
302
n
316
LEU
302
A
SER
303
n
317
SER
303
A
GLU
304
n
318
GLU
304
A
GLY
305
n
319
GLY
305
A
VAL
306
n
320
VAL
306
A
PRO
307
n
321
PRO
307
A
GLN
308
n
322
GLN
308
A
VAL
309
n
323
VAL
309
A
SER
310
n
324
SER
310
A
VAL
311
n
325
VAL
311
A
PRO
312
n
326
PRO
312
A
VAL
313
n
327
VAL
313
A
ILE
314
n
328
ILE
314
A
ALA
315
n
329
ALA
315
A
GLU
316
n
330
GLU
316
A
VAL
317
n
331
VAL
317
A
TRP
318
n
332
TRP
318
A
ASP
319
n
333
ASP
319
A
SER
320
n
334
SER
320
A
ALA
321
n
335
ALA
321
A
ARG
322
n
336
ARG
322
A
LEU
323
n
337
LEU
323
A
LEU
324
n
338
LEU
324
A
HIS
325
n
339
HIS
325
A
ALA
326
n
340
ALA
326
A
ALA
327
n
341
ALA
327
A
GLY
328
n
342
GLY
328
A
ALA
329
n
343
ALA
329
A
GLY
330
n
344
GLY
330
A
VAL
331
n
345
VAL
331
A
GLU
332
n
346
GLU
332
A
VAL
333
n
347
VAL
333
A
PRO
334
n
348
PRO
334
A
n
349
335
A
n
350
336
A
n
351
337
A
n
352
338
A
n
353
339
A
n
354
340
A
n
355
341
A
SER
342
n
356
SER
342
A
VAL
343
n
357
VAL
343
A
LEU
344
n
358
LEU
344
A
ALA
345
n
359
ALA
345
A
ALA
346
n
360
ALA
346
A
CYS
347
n
361
CYS
347
A
ALA
348
n
362
ALA
348
A
ARG
349
n
363
ARG
349
A
ILE
350
n
364
ILE
350
A
ARG
351
n
365
ARG
351
A
ASP
352
n
366
ASP
352
A
ASP
353
n
367
ASP
353
A
SER
354
n
368
SER
354
A
SER
355
n
369
SER
355
A
TYR
356
n
370
TYR
356
A
VAL
357
n
371
VAL
357
A
GLY
358
n
372
GLY
358
A
ASN
359
n
373
ASN
359
A
ALA
360
n
374
ALA
360
A
ARG
361
n
375
ARG
361
A
ARG
362
n
376
ARG
362
A
LEU
363
n
377
LEU
363
A
ALA
364
n
378
ALA
364
A
ALA
365
n
379
ALA
365
A
GLU
366
n
380
GLU
366
A
MSE
367
n
381
MSE
367
A
ALA
368
n
382
ALA
368
A
THR
369
n
383
THR
369
A
LEU
370
n
384
LEU
370
A
PRO
371
n
385
PRO
371
A
THR
372
n
386
THR
372
A
PRO
373
n
387
PRO
373
A
ALA
374
n
388
ALA
374
A
ASP
375
n
389
ASP
375
A
ILE
376
n
390
ILE
376
A
VAL
377
n
391
VAL
377
A
ARG
378
n
392
ARG
378
A
LEU
379
n
393
LEU
379
A
ILE
380
n
394
ILE
380
A
GLU
381
n
395
GLU
381
A
GLN
382
n
396
GLN
382
A
ALA
383
n
397
ALA
383
A
author_and_software_defined_assembly
PISA
2
dimeric
4700
-40
27190
A
MSE
1
SELENOMETHIONINE
A
MSE
15
MET
A
MSE
15
SELENOMETHIONINE
A
MSE
29
MET
A
MSE
39
SELENOMETHIONINE
A
MSE
53
MET
A
MSE
59
SELENOMETHIONINE
A
MSE
73
MET
A
MSE
74
SELENOMETHIONINE
A
MSE
88
MET
A
MSE
96
SELENOMETHIONINE
A
MSE
110
MET
A
MSE
179
SELENOMETHIONINE
A
MSE
193
MET
A
MSE
190
SELENOMETHIONINE
A
MSE
204
MET
A
MSE
283
SELENOMETHIONINE
A
MSE
297
MET
A
MSE
367
SELENOMETHIONINE
A
MSE
381
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_444
-y-1,-x-1,-z-1/6
crystal symmetry operation
-40.5705000000
-70.2701672885
-38.3176666667
A
O
THR
53
A
O
THR
67
A
N
ALA
35
A
N
ALA
49
A
O
ALA
34
A
O
ALA
48
A
N
VAL
5
A
N
VAL
19
A
N
ILE
6
A
N
ILE
20
A
O
LEU
113
A
O
LEU
127
A
N
VAL
112
A
N
VAL
126
A
O
ILE
133
A
O
ILE
147
A
N
GLU
134
A
N
GLU
148
A
O
ILE
172
A
O
ILE
186
A
N
SER
171
A
N
SER
185
A
O
THR
188
A
O
THR
202
A
O
LEU
272
A
O
LEU
286
A
N
VAL
252
A
N
VAL
266
A
O
VAL
253
A
O
VAL
267
A
N
LEU
217
A
N
LEU
231
A
N
CYS
216
A
N
CYS
230
A
O
VAL
288
A
O
VAL
302
A
N
VAL
289
A
N
VAL
303
A
O
VAL
309
A
O
VAL
323
A
N
GLN
308
A
N
GLN
322
A
O
VAL
331
A
O
VAL
345
1
A
HOH
537
C
HOH
1
A
HOH
558
C
HOH
1
A
HIS
-13
A
HIS
1
1
Y
1
A
HIS
-12
A
HIS
2
1
Y
1
A
HIS
-11
A
HIS
3
1
Y
1
A
HIS
-10
A
HIS
4
1
Y
1
A
HIS
-9
A
HIS
5
1
Y
1
A
SER
-8
A
SER
6
1
Y
1
A
SER
-7
A
SER
7
1
Y
1
A
GLY
-6
A
GLY
8
1
Y
1
A
VAL
-5
A
VAL
9
1
Y
1
A
PRO
-4
A
PRO
10
1
Y
1
A
ARG
-3
A
ARG
11
1
Y
1
A
GLY
-2
A
GLY
12
1
Y
1
A
SER
-1
A
SER
13
1
Y
1
A
GLN
182
A
GLN
196
1
Y
1
A
PRO
183
A
PRO
197
1
Y
1
A
LYS
184
A
LYS
198
1
Y
1
A
PRO
185
A
PRO
199
1
Y
1
A
PRO
226
A
PRO
240
1
Y
1
A
ASN
227
A
ASN
241
1
Y
1
A
THR
228
A
THR
242
1
Y
1
A
ASN
229
A
ASN
243
1
Y
1
A
THR
230
A
THR
244
1
Y
1
A
ILE
231
A
ILE
245
1
Y
1
A
PRO
232
A
PRO
246
1
Y
1
A
GLY
233
A
GLY
247
1
Y
1
A
GLY
234
A
GLY
248
1
Y
1
A
LEU
235
A
LEU
249
1
Y
1
A
SER
236
A
SER
250
1
Y
1
A
GLN
262
A
GLN
276
1
Y
1
A
THR
263
A
THR
277
1
Y
1
A
LEU
264
A
LEU
278
1
Y
1
A
GLN
265
A
GLN
279
1
Y
1
A
PRO
266
A
PRO
280
1
Y
1
A
LEU
267
A
LEU
281
1
Y
1
A
TRP
335
A
TRP
349
1
Y
1
A
GLU
336
A
GLU
350
1
Y
1
A
GLN
337
A
GLN
351
1
Y
1
A
ALA
338
A
ALA
352
1
Y
1
A
GLY
339
A
GLY
353
1
Y
1
A
VAL
340
A
VAL
354
1
Y
1
A
GLU
341
A
GLU
355
1
Y
1
A
A
NH2
O
ARG
HOH
95
564
1.92
1
A
PRO
55
-61.73
-178.19
1
A
LYS
108
54.20
75.27
1
A
SER
178
-84.76
33.84
1
A
MSE
179
-137.25
-53.16
1
A
VAL
313
-92.26
-60.12
147.610
32.2766
3.640
0.2692
0.2441
0.2454
2.4050
44.4900
897
18271
18057
4.9700
98.8300
1.000
0.480
0.7096
0.3500
RANDOM, ASSIGN TEST SET IN THIN RESOLUTION SHELLS
1
1.360
MOLECULAR REPLACEMENT
33.3400
0.9000
1.1100
PDB ENTRY 4FZR
ML
FLAT BULK SOLVENT MODEL
2.4050
44.4900
67
2771
25
0
2679
0.003
2771
0.758
3787
0.049
444
0.004
487
13.800
1024
0.3872
0.3249
2.5560
132
2723
2855
6
96.0000
0.3364
0.2903
2.7534
165
2774
2939
6
100.0000
0.2826
0.2758
3.0304
125
2855
2980
6
100.0000
0.3033
0.2494
3.4688
147
2859
3006
6
100.0000
0.2577
0.2201
4.3697
165
2894
3059
6
100.0000
0.2432
0.2355
44.4973
163
3055
3218
6
98.0000
2.400
50.000
4G2T
18241
18150
0
0
0.200
1.027
1
5.300
15.900
99.500
2.400
2.440
887
0.810
1
14.200
100.000
2.440
2.490
874
0.836
1
15.200
100.000
2.490
2.530
889
0.862
1
15.800
100.000
2.530
2.590
883
0.895
1
16.600
100.000
2.590
2.640
878
0.904
1
17.100
100.000
2.640
2.700
907
0.947
1
17.100
100.000
2.700
2.770
882
1.040
1
17.700
99.900
2.770
2.850
876
1.079
1
17.400
100.000
2.850
2.930
895
1.154
1
17.300
100.000
2.930
3.020
885
1.161
1
17.400
100.000
3.020
3.130
903
1.248
1
17.000
100.000
3.130
3.260
903
1.232
1
16.900
99.800
3.260
3.410
900
1.247
1
16.000
99.900
3.410
3.580
902
1.137
1
15.800
99.300
3.580
3.810
917
1.118
1
15.400
99.700
3.810
4.100
913
1.085
1
15.200
99.300
4.100
4.520
935
0.974
1
15.100
99.900
4.520
5.170
938
0.875
1
14.900
99.900
5.170
6.510
965
0.830
1
15.300
99.900
6.510
50.000
1018
1.027
1
11.900
93.900
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8_1063
data extraction
PDB
deposit@deposit.rcsb.org
August 3, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-2000
data reduction
HKL-2000
phasing
PHENIX
PHASER
Crystal Structure of Streptomyces sp. SF2575 glycosyltransferase SsfS6, complexed with thymidine diphosphate
1
N
N
2
N
N
3
N
N
A
SER
10
A
SER
24
HELX_P
A
PRO
16
A
PRO
30
5
1
7
A
LEU
17
A
LEU
31
HELX_P
A
ALA
27
A
ALA
41
1
2
11
A
MSE
39
A
MSE
53
HELX_P
A
GLY
45
A
GLY
59
1
3
7
A
ASP
58
A
ASP
72
HELX_P
A
SER
64
A
SER
78
1
4
7
A
GLU
77
A
GLU
91
HELX_P
A
LYS
108
A
LYS
122
1
5
32
A
LEU
119
A
LEU
133
HELX_P
A
GLY
129
A
GLY
143
1
6
11
A
PRO
142
A
PRO
156
HELX_P
A
LEU
153
A
LEU
167
1
7
12
A
LEU
153
A
LEU
167
HELX_P
A
GLU
159
A
GLU
173
1
8
7
A
PRO
203
A
PRO
217
HELX_P
A
PHE
207
A
PHE
221
5
9
5
A
LEU
238
A
LEU
252
HELX_P
A
LEU
245
A
LEU
259
1
10
8
A
PRO
246
A
PRO
260
HELX_P
A
GLY
249
A
GLY
263
5
11
4
A
PRO
278
A
PRO
292
HELX_P
A
MSE
283
A
MSE
297
1
12
6
A
PRO
284
A
PRO
298
HELX_P
A
CYS
286
A
CYS
300
5
13
3
A
GLY
294
A
GLY
308
HELX_P
A
GLU
304
A
GLU
318
1
14
11
A
ILE
314
A
ILE
328
HELX_P
A
GLU
316
A
GLU
330
5
15
3
A
VAL
317
A
VAL
331
HELX_P
A
ALA
327
A
ALA
341
1
16
11
A
VAL
343
A
VAL
357
HELX_P
A
ASP
353
A
ASP
367
1
17
11
A
SER
354
A
SER
368
HELX_P
A
LEU
370
A
LEU
384
1
18
17
A
THR
372
A
THR
386
HELX_P
A
ALA
383
A
ALA
397
1
19
12
covale
1.329
both
A
HIS
0
A
C
HIS
14
1_555
A
MSE
1
A
N
MSE
15
1_555
covale
1.328
both
A
MSE
1
A
C
MSE
15
1_555
A
ARG
2
A
N
ARG
16
1_555
covale
1.329
both
A
VAL
14
A
C
VAL
28
1_555
A
MSE
15
A
N
MSE
29
1_555
covale
1.348
both
A
MSE
15
A
C
MSE
29
1_555
A
PRO
16
A
N
PRO
30
1_555
covale
1.329
both
A
ASN
38
A
C
ASN
52
1_555
A
MSE
39
A
N
MSE
53
1_555
covale
1.329
both
A
MSE
39
A
C
MSE
53
1_555
A
GLY
40
A
N
GLY
54
1_555
covale
1.329
both
A
A
ASP
58
A
C
ASP
72
1_555
A
MSE
59
A
N
MSE
73
1_555
covale
1.328
both
B
A
ASP
58
A
C
ASP
72
1_555
A
MSE
59
A
N
MSE
73
1_555
covale
1.350
both
A
MSE
59
A
C
MSE
73
1_555
A
PRO
60
A
N
PRO
74
1_555
covale
1.329
both
A
THR
73
A
C
THR
87
1_555
A
MSE
74
A
N
MSE
88
1_555
covale
1.342
both
A
MSE
74
A
C
MSE
88
1_555
A
PRO
75
A
N
PRO
89
1_555
covale
1.329
both
A
ARG
95
A
C
ARG
109
1_555
A
MSE
96
A
N
MSE
110
1_555
covale
1.331
both
A
MSE
96
A
C
MSE
110
1_555
A
ARG
97
A
N
ARG
111
1_555
covale
1.328
both
A
SER
178
A
C
SER
192
1_555
A
MSE
179
A
N
MSE
193
1_555
covale
1.329
both
A
MSE
179
A
C
MSE
193
1_555
A
GLU
180
A
N
GLU
194
1_555
covale
1.330
both
A
LYS
189
A
C
LYS
203
1_555
A
MSE
190
A
N
MSE
204
1_555
covale
1.329
both
A
MSE
190
A
C
MSE
204
1_555
A
ARG
191
A
N
ARG
205
1_555
covale
1.331
both
A
ILE
282
A
C
ILE
296
1_555
A
MSE
283
A
N
MSE
297
1_555
covale
1.349
both
A
MSE
283
A
C
MSE
297
1_555
A
PRO
284
A
N
PRO
298
1_555
covale
1.330
both
A
GLU
366
A
C
GLU
380
1_555
A
MSE
367
A
N
MSE
381
1_555
covale
1.329
both
A
MSE
367
A
C
MSE
381
1_555
A
ALA
368
A
N
ALA
382
1_555
TRANSFERASE
Structural Genomics, PSI-Biology, Protein Structure Initiative, Enzyme Discovery for Natural Product Biosynthesis, NATPRO, Glycosyltransferase, TRANSFERASE
D6MSX4_9ACTO
UNP
1
1
D6MSX4
MRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPREEKP
LLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIKSAGVGELAPELAEL
GLTDFPDPLLSIDVCPPSMEAQPKPGTTKMRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQA
LSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIMPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDS
ARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGNARRLAAEMATLPTPADIVRLIEQA
1
383
4G2T
1
383
D6MSX4
A
1
15
397
1
expression tag
HIS
-13
4G2T
A
D6MSX4
UNP
1
1
expression tag
HIS
-12
4G2T
A
D6MSX4
UNP
2
1
expression tag
HIS
-11
4G2T
A
D6MSX4
UNP
3
1
expression tag
HIS
-10
4G2T
A
D6MSX4
UNP
4
1
expression tag
HIS
-9
4G2T
A
D6MSX4
UNP
5
1
expression tag
SER
-8
4G2T
A
D6MSX4
UNP
6
1
expression tag
SER
-7
4G2T
A
D6MSX4
UNP
7
1
expression tag
GLY
-6
4G2T
A
D6MSX4
UNP
8
1
expression tag
VAL
-5
4G2T
A
D6MSX4
UNP
9
1
expression tag
PRO
-4
4G2T
A
D6MSX4
UNP
10
1
expression tag
ARG
-3
4G2T
A
D6MSX4
UNP
11
1
expression tag
GLY
-2
4G2T
A
D6MSX4
UNP
12
1
expression tag
SER
-1
4G2T
A
D6MSX4
UNP
13
1
expression tag
HIS
0
4G2T
A
D6MSX4
UNP
14
7
6
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
PHE
50
A
PHE
64
A
CYS
54
A
CYS
68
A
GLU
30
A
GLU
44
A
SER
36
A
SER
50
A
ARG
2
A
ARG
16
A
ILE
6
A
ILE
20
A
LEU
111
A
LEU
125
A
GLU
115
A
GLU
129
A
TRP
132
A
TRP
146
A
GLN
135
A
GLN
149
A
LEU
170
A
LEU
184
A
ASP
173
A
ASP
187
A
THR
188
A
THR
202
A
LYS
189
A
LYS
203
A
VAL
271
A
VAL
285
A
GLY
275
A
GLY
289
A
GLU
251
A
GLU
265
A
ALA
255
A
ALA
269
A
ARG
214
A
ARG
228
A
THR
218
A
THR
232
A
VAL
288
A
VAL
302
A
HIS
291
A
HIS
305
A
GLN
308
A
GLN
322
A
SER
310
A
SER
324
A
GLY
330
A
GLY
344
A
GLU
332
A
GLU
346
BINDING SITE FOR RESIDUE TYD A 401
A
TYD
401
Software
19
A
MSE
15
A
MSE
29
19
1_555
A
ASN
196
A
ASN
210
19
1_555
A
GLY
220
A
GLY
234
19
1_555
A
THR
221
A
THR
235
19
1_555
A
ARG
222
A
ARG
236
19
1_555
A
ALA
255
A
ALA
269
19
1_555
A
VAL
256
A
VAL
270
19
1_555
A
GLN
276
A
GLN
290
19
1_555
A
PHE
277
A
PHE
291
19
1_555
A
PRO
278
A
PRO
292
19
1_555
A
LEU
279
A
LEU
293
19
1_555
A
HIS
292
A
HIS
306
19
1_555
A
GLY
294
A
GLY
308
19
1_555
A
HIS
295
A
HIS
309
19
1_555
A
GLY
296
A
GLY
310
19
1_555
A
THR
297
A
THR
311
19
1_555
A
HOH
502
C
HOH
19
1_555
A
HOH
523
C
HOH
19
1_555
A
HOH
535
C
HOH
19
1_555
178
P 61 2 2