0.023787 0.000000 0.000000 0.000000 0.020846 0.000000 0.000000 0.000000 0.014577 0.00000 0.00000 0.00000 Drake, E. Edwardraja, S. Lin, Q. Gulick, A.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 42.040 47.970 68.600 C14 H12 Br2 340.053 4,4'-bis(bromomethyl)biphenyl non-polymer C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C3 H7 N O2 S 121.158 D-CYSTEINE D-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Am.Chem.Soc. JACSAT 0004 0002-7863 134 14734 14737 10.1021/ja306864v 22920569 Rational design of proteolytically stable, cell-permeable peptide-based selective Mcl-1 inhibitors. 2012 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 113 1 CCD 2011-04-07 MARMOSAIC 325 mm CCD Si(111) SINGLE WAVELENGTH M x-ray 1 0.97945 1.0 BL9-2 SSRL 0.97945 SYNCHROTRON SSRL BEAMLINE BL9-2 18634.074 Induced myeloid leukemia cell differentiation protein Mcl-1 homolog residues 152-308 1 man polymer 2184.657 Noxa BH3 peptide (cysteine-mediated cross-linked) 1 syn polymer 340.053 4,4'-bis(bromomethyl)biphenyl 1 syn non-polymer 18.015 water 39 nat water Bcl-2-related protein EAT/mcl1 no no GPLGSPEFEDDLYRQSLEIISRYLREQATGSKDSKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEGD VKSFSRVMVHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLVKQRGWDGFVEFFHVQ DLEGG GPLGSPEFEDDLYRQSLEIISRYLREQATGSKDSKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEGD VKSFSRVMVHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLVKQRGWDGFVEFFHVQ DLEGG A polypeptide(L) no yes (ACE)AA(DCY)LRRIGDCVNLRQKLLN(NH2) XAACLRRIGDCVNLRQKLLNX B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample Mcl1 10090 Mus musculus 562 Escherichia coli 1 1.73 28.75 VAPOR DIFFUSION, HANGING DROP 8.5 15% Peg 8000, 225 mM CaCl2, 2% Ethylene Glycol,50 mM Epps (pH 8.5), VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 repository Initial release Derived calculations 1 0 2012-12-05 1 1 2013-06-26 RCSB Y RCSB 2012-07-13 REL REL 4BP 4,4'-bis(bromomethyl)biphenyl HOH water Synthetic Construct sample Anticancer Noxa BH3 peptide (cysteine-mediated cross-linked) Polypeptide BPH 4 3 4BP 4BP 101 B HOH 4 4 HOH HOH 401 A HOH 5 4 HOH HOH 402 A HOH 26 4 HOH HOH 403 A HOH 30 4 HOH HOH 404 A HOH 37 4 HOH HOH 405 A HOH 40 4 HOH HOH 406 A HOH 44 4 HOH HOH 407 A HOH 47 4 HOH HOH 408 A HOH 49 4 HOH HOH 409 A HOH 53 4 HOH HOH 410 A HOH 54 4 HOH HOH 411 A HOH 55 4 HOH HOH 412 A HOH 59 4 HOH HOH 413 A HOH 60 4 HOH HOH 414 A HOH 61 4 HOH HOH 415 A HOH 62 4 HOH HOH 416 A HOH 64 4 HOH HOH 417 A HOH 66 4 HOH HOH 418 A HOH 68 4 HOH HOH 419 A HOH 70 4 HOH HOH 420 A HOH 71 4 HOH HOH 421 A HOH 73 4 HOH HOH 422 A HOH 74 4 HOH HOH 423 A HOH 75 4 HOH HOH 424 A HOH 76 4 HOH HOH 425 A HOH 77 4 HOH HOH 426 A HOH 78 4 HOH HOH 427 A HOH 79 4 HOH HOH 428 A HOH 80 4 HOH HOH 429 A HOH 81 4 HOH HOH 430 A HOH 82 4 HOH HOH 431 A HOH 83 4 HOH HOH 432 A HOH 84 4 HOH HOH 433 A HOH 86 4 HOH HOH 434 A HOH 87 4 HOH HOH 435 A HOH 69 4 HOH HOH 201 B HOH 72 4 HOH HOH 202 B HOH 88 4 HOH HOH 203 B HOH 90 4 HOH HOH 204 B n 1 163 A n 2 164 A n 3 165 A n 4 166 A n 5 167 A n 6 168 A n 7 169 A n 8 170 A GLU 171 n 9 GLU 171 A ASP 172 n 10 ASP 172 A ASP 173 n 11 ASP 173 A LEU 174 n 12 LEU 174 A TYR 175 n 13 TYR 175 A ARG 176 n 14 ARG 176 A GLN 177 n 15 GLN 177 A SER 178 n 16 SER 178 A LEU 179 n 17 LEU 179 A GLU 180 n 18 GLU 180 A ILE 181 n 19 ILE 181 A ILE 182 n 20 ILE 182 A SER 183 n 21 SER 183 A ARG 184 n 22 ARG 184 A TYR 185 n 23 TYR 185 A LEU 186 n 24 LEU 186 A ARG 187 n 25 ARG 187 A GLU 188 n 26 GLU 188 A GLN 189 n 27 GLN 189 A ALA 190 n 28 ALA 190 A THR 191 n 29 THR 191 A n 30 192 A n 31 193 A n 32 194 A n 33 195 A n 34 196 A n 35 197 A n 36 198 A n 37 199 A n 38 200 A n 39 201 A n 40 202 A n 41 203 A n 42 204 A n 43 205 A GLY 206 n 44 GLY 206 A ARG 207 n 45 ARG 207 A ARG 208 n 46 ARG 208 A ALA 209 n 47 ALA 209 A LEU 210 n 48 LEU 210 A GLU 211 n 49 GLU 211 A THR 212 n 50 THR 212 A LEU 213 n 51 LEU 213 A ARG 214 n 52 ARG 214 A ARG 215 n 53 ARG 215 A VAL 216 n 54 VAL 216 A GLY 217 n 55 GLY 217 A ASP 218 n 56 ASP 218 A GLY 219 n 57 GLY 219 A VAL 220 n 58 VAL 220 A GLN 221 n 59 GLN 221 A ARG 222 n 60 ARG 222 A ASN 223 n 61 ASN 223 A HIS 224 n 62 HIS 224 A GLU 225 n 63 GLU 225 A THR 226 n 64 THR 226 A ALA 227 n 65 ALA 227 A PHE 228 n 66 PHE 228 A GLN 229 n 67 GLN 229 A GLY 230 n 68 GLY 230 A MET 231 n 69 MET 231 A LEU 232 n 70 LEU 232 A ARG 233 n 71 ARG 233 A LYS 234 n 72 LYS 234 A n 73 235 A n 74 236 A n 75 237 A n 76 238 A n 77 239 A n 78 240 A n 79 241 A n 80 242 A n 81 243 A LYS 244 n 82 LYS 244 A SER 245 n 83 SER 245 A PHE 246 n 84 PHE 246 A SER 247 n 85 SER 247 A ARG 248 n 86 ARG 248 A VAL 249 n 87 VAL 249 A MET 250 n 88 MET 250 A VAL 251 n 89 VAL 251 A HIS 252 n 90 HIS 252 A VAL 253 n 91 VAL 253 A PHE 254 n 92 PHE 254 A LYS 255 n 93 LYS 255 A ASP 256 n 94 ASP 256 A GLY 257 n 95 GLY 257 A VAL 258 n 96 VAL 258 A THR 259 n 97 THR 259 A ASN 260 n 98 ASN 260 A TRP 261 n 99 TRP 261 A GLY 262 n 100 GLY 262 A ARG 263 n 101 ARG 263 A ILE 264 n 102 ILE 264 A VAL 265 n 103 VAL 265 A THR 266 n 104 THR 266 A LEU 267 n 105 LEU 267 A ILE 268 n 106 ILE 268 A SER 269 n 107 SER 269 A PHE 270 n 108 PHE 270 A GLY 271 n 109 GLY 271 A ALA 272 n 110 ALA 272 A PHE 273 n 111 PHE 273 A VAL 274 n 112 VAL 274 A ALA 275 n 113 ALA 275 A LYS 276 n 114 LYS 276 A HIS 277 n 115 HIS 277 A LEU 278 n 116 LEU 278 A LYS 279 n 117 LYS 279 A SER 280 n 118 SER 280 A VAL 281 n 119 VAL 281 A ASN 282 n 120 ASN 282 A GLN 283 n 121 GLN 283 A GLU 284 n 122 GLU 284 A SER 285 n 123 SER 285 A PHE 286 n 124 PHE 286 A ILE 287 n 125 ILE 287 A GLU 288 n 126 GLU 288 A PRO 289 n 127 PRO 289 A LEU 290 n 128 LEU 290 A ALA 291 n 129 ALA 291 A GLU 292 n 130 GLU 292 A THR 293 n 131 THR 293 A ILE 294 n 132 ILE 294 A THR 295 n 133 THR 295 A ASP 296 n 134 ASP 296 A VAL 297 n 135 VAL 297 A LEU 298 n 136 LEU 298 A VAL 299 n 137 VAL 299 A ARG 300 n 138 ARG 300 A THR 301 n 139 THR 301 A LYS 302 n 140 LYS 302 A ARG 303 n 141 ARG 303 A ASP 304 n 142 ASP 304 A TRP 305 n 143 TRP 305 A LEU 306 n 144 LEU 306 A VAL 307 n 145 VAL 307 A LYS 308 n 146 LYS 308 A GLN 309 n 147 GLN 309 A ARG 310 n 148 ARG 310 A GLY 311 n 149 GLY 311 A TRP 312 n 150 TRP 312 A ASP 313 n 151 ASP 313 A GLY 314 n 152 GLY 314 A PHE 315 n 153 PHE 315 A VAL 316 n 154 VAL 316 A GLU 317 n 155 GLU 317 A PHE 318 n 156 PHE 318 A PHE 319 n 157 PHE 319 A HIS 320 n 158 HIS 320 A VAL 321 n 159 VAL 321 A GLN 322 n 160 GLN 322 A n 161 323 A n 162 324 A n 163 325 A n 164 326 A n 165 327 A ACE 1 n 1 ACE 1 B ALA 2 n 2 ALA 2 B ALA 3 n 3 ALA 3 B BPH 4 n 4 DCY 4 B LEU 5 n 5 LEU 5 B ARG 6 n 6 ARG 6 B ARG 7 n 7 ARG 7 B ILE 8 n 8 ILE 8 B GLY 9 n 9 GLY 9 B ASP 10 n 10 ASP 10 B CYS 11 n 11 CYS 11 B VAL 12 n 12 VAL 12 B ASN 13 n 13 ASN 13 B LEU 14 n 14 LEU 14 B ARG 15 n 15 ARG 15 B GLN 16 n 16 GLN 16 B LYS 17 n 17 LYS 17 B LEU 18 n 18 LEU 18 B LEU 19 n 19 LEU 19 B ASN 20 n 20 ASN 20 B ASN 20 n 21 NH2 21 B author_and_software_defined_assembly PISA 2 dimeric 1960 -14 8170 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG LYS 244 A CG LYS 82 1 Y 1 A CD LYS 244 A CD LYS 82 1 Y 1 A CE LYS 244 A CE LYS 82 1 Y 1 A NZ LYS 244 A NZ LYS 82 1 Y 1 A CG LYS 255 A CG LYS 93 1 Y 1 A CD LYS 255 A CD LYS 93 1 Y 1 A CE LYS 255 A CE LYS 93 1 Y 1 A NZ LYS 255 A NZ LYS 93 1 Y 1 A CG ASN 282 A CG ASN 120 1 Y 1 A OD1 ASN 282 A OD1 ASN 120 1 Y 1 A ND2 ASN 282 A ND2 ASN 120 1 Y 1 A CG ARG 300 A CG ARG 138 1 Y 1 A CD ARG 300 A CD ARG 138 1 Y 1 A NE ARG 300 A NE ARG 138 1 Y 1 A CZ ARG 300 A CZ ARG 138 1 Y 1 A NH1 ARG 300 A NH1 ARG 138 1 Y 1 A NH2 ARG 300 A NH2 ARG 138 1 Y 1 A GLY 163 A GLY 1 1 Y 1 A PRO 164 A PRO 2 1 Y 1 A LEU 165 A LEU 3 1 Y 1 A GLY 166 A GLY 4 1 Y 1 A SER 167 A SER 5 1 Y 1 A PRO 168 A PRO 6 1 Y 1 A GLU 169 A GLU 7 1 Y 1 A PHE 170 A PHE 8 1 Y 1 A GLY 192 A GLY 30 1 Y 1 A SER 193 A SER 31 1 Y 1 A LYS 194 A LYS 32 1 Y 1 A ASP 195 A ASP 33 1 Y 1 A SER 196 A SER 34 1 Y 1 A LYS 197 A LYS 35 1 Y 1 A PRO 198 A PRO 36 1 Y 1 A LEU 199 A LEU 37 1 Y 1 A GLY 200 A GLY 38 1 Y 1 A GLU 201 A GLU 39 1 Y 1 A ALA 202 A ALA 40 1 Y 1 A GLY 203 A GLY 41 1 Y 1 A ALA 204 A ALA 42 1 Y 1 A ALA 205 A ALA 43 1 Y 1 A LEU 235 A LEU 73 1 Y 1 A ASP 236 A ASP 74 1 Y 1 A ILE 237 A ILE 75 1 Y 1 A LYS 238 A LYS 76 1 Y 1 A ASN 239 A ASN 77 1 Y 1 A GLU 240 A GLU 78 1 Y 1 A GLY 241 A GLY 79 1 Y 1 A ASP 242 A ASP 80 1 Y 1 A VAL 243 A VAL 81 1 Y 1 A ASP 323 A ASP 161 1 Y 1 A LEU 324 A LEU 162 1 Y 1 A GLU 325 A GLU 163 1 Y 1 A GLY 326 A GLY 164 1 Y 1 A GLY 327 A GLY 165 1 Y 1 A A OD2 NH1 ASP ARG 172 303 1.95 1 A A OE1 O GLU HOH 171 421 2.15 1 A A SER PHE 245 246 143.53 1 A PHE 246 -36.15 -38.01 27.120 -0.18 -0.00 0.00 -1.36 0.00 1.54 0.947 0.923 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.23879 0.19171 0.1972 0.19389 2.00 39.31 468 9357 9295 4.8 99.34 4.194 0.119 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT 0.212 0.179 0.80 0.80 1.40 MAXIMUM LIKELIHOOD MASK 2.00 39.31 39 1255 14 0 1202 0.021 0.021 1237 1.789 1.959 1663 6.001 5.000 142 33.486 22.063 63 16.303 15.000 217 19.134 15.000 16 0.136 0.200 183 0.010 0.020 933 1.218 1.500 731 2.362 2.000 1169 3.791 3.000 506 6.258 4.500 494 0.271 0.202 2.052 39 652 20 99.00 2.0 39.31 4G35 9850 9801 0.0 0.0 1 99.5 0.287 2.00 2.11 6.1 1 6.8 99.4 data collection Blu-Ice phasing MOLREP refinement REFMAC 5.5.0088 data reduction MOSFLM data scaling SCALA Induced myeloid leukemia cell differentiation protein Mcl-1 homolog, Noxa BH3 (cysteine-mediated cross-linked) Mcl-1 in complex with a biphenyl cross-linked Noxa peptide. 1 N N 2 N N 3 N N 4 N N 4 N N A ASP 172 A ASP 10 HELX_P A THR 191 A THR 29 1 1 20 A ARG 207 A ARG 45 HELX_P A HIS 224 A HIS 62 1 2 18 A HIS 224 A HIS 62 HELX_P A ARG 233 A ARG 71 1 3 10 A SER 245 A SER 83 HELX_P A PHE 254 A PHE 92 1 4 10 A ASN 260 A ASN 98 HELX_P A VAL 281 A VAL 119 1 5 22 A GLN 283 A GLN 121 HELX_P A SER 285 A SER 123 5 6 3 A PHE 286 A PHE 124 HELX_P A GLN 309 A GLN 147 1 7 24 A ARG 310 A ARG 148 HELX_P A HIS 320 A HIS 158 1 8 11 B ALA 2 B ALA 2 HELX_P B ASN 20 B ASN 20 1 9 19 covale 1.335 B ACE 1 B C ACE 1 1_555 B ALA 2 B N ALA 2 1_555 covale 1.318 B ALA 3 B C ALA 3 1_555 B DCY 4 B N DCY 4 1_555 covale 1.330 B DCY 4 B C DCY 4 1_555 B LEU 5 B N LEU 5 1_555 covale 1.235 B ASN 20 B C ASN 20 1_555 B NH2 21 B N NH2 21 1_555 covale 1.816 B DCY 4 B SG DCY 4 1_555 B 4BP 101 C C01 4BP 1_555 covale 1.848 B CYS 11 B SG CYS 11 1_555 B 4BP 101 C C12 4BP 1_555 Apoptosis/Inhibitor APOPTOSIS, BH3 domain, Bcl-2 family, Apoptosis-Inhibitor complex MCL1_MOUSE UNP 1 152 P97287 EDDLYRQSLEIISRYLREQATGSKDSKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEGDVKSFSRVM VHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLVKQRGWDGFVEFFHVQDLEGG 4G35 PDB 2 4G35 152 308 4G35 171 327 P97287 A 1 9 165 1 21 4G35 1 21 4G35 B 2 1 21 1 EXPRESSION TAG GLY 163 4G35 A P97287 UNP 1 1 EXPRESSION TAG PRO 164 4G35 A P97287 UNP 2 1 EXPRESSION TAG LEU 165 4G35 A P97287 UNP 3 1 EXPRESSION TAG GLY 166 4G35 A P97287 UNP 4 1 EXPRESSION TAG SER 167 4G35 A P97287 UNP 5 1 EXPRESSION TAG PRO 168 4G35 A P97287 UNP 6 1 EXPRESSION TAG GLU 169 4G35 A P97287 UNP 7 1 EXPRESSION TAG PHE 170 4G35 A P97287 UNP 8 BINDING SITE FOR LINKED RESIDUES B 1 to 22 Software 24 A GLU 171 A GLU 9 24 4_445 A GLU 188 A GLU 26 24 4_455 A THR 191 A THR 29 24 4_455 A ARG 215 A ARG 53 24 4_455 A ASP 218 A ASP 56 24 4_455 A GLY 219 A GLY 57 24 4_455 A HIS 224 A HIS 62 24 1_555 A MET 231 A MET 69 24 1_555 A VAL 249 A VAL 87 24 1_555 A HIS 252 A HIS 90 24 1_555 A VAL 253 A VAL 91 24 1_555 A ASP 256 A ASP 94 24 1_555 A ASN 260 A ASN 98 24 1_555 A TRP 261 A TRP 99 24 1_555 A GLY 262 A GLY 100 24 1_555 A ARG 263 A ARG 101 24 1_555 A THR 266 A THR 104 24 1_555 A LEU 267 A LEU 105 24 1_555 A PHE 318 A PHE 156 24 1_555 A PHE 319 A PHE 157 24 1_555 A VAL 321 A VAL 159 24 1_555 A GLN 322 A GLN 160 24 4_455 A HOH 403 D HOH 24 4_455 B HOH 201 E HOH 24 1_555 19 P 21 21 21