0.023787
0.000000
0.000000
0.000000
0.020846
0.000000
0.000000
0.000000
0.014577
0.00000
0.00000
0.00000
Drake, E.
Edwardraja, S.
Lin, Q.
Gulick, A.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
42.040
47.970
68.600
C14 H12 Br2
340.053
4,4'-bis(bromomethyl)biphenyl
non-polymer
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C3 H7 N O2 S
121.158
D-CYSTEINE
D-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
134
14734
14737
10.1021/ja306864v
22920569
Rational design of proteolytically stable, cell-permeable peptide-based selective Mcl-1 inhibitors.
2012
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
113
1
CCD
2011-04-07
MARMOSAIC 325 mm CCD
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97945
1.0
BL9-2
SSRL
0.97945
SYNCHROTRON
SSRL BEAMLINE BL9-2
18634.074
Induced myeloid leukemia cell differentiation protein Mcl-1 homolog
residues 152-308
1
man
polymer
2184.657
Noxa BH3 peptide (cysteine-mediated cross-linked)
1
syn
polymer
340.053
4,4'-bis(bromomethyl)biphenyl
1
syn
non-polymer
18.015
water
39
nat
water
Bcl-2-related protein EAT/mcl1
no
no
GPLGSPEFEDDLYRQSLEIISRYLREQATGSKDSKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEGD
VKSFSRVMVHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLVKQRGWDGFVEFFHVQ
DLEGG
GPLGSPEFEDDLYRQSLEIISRYLREQATGSKDSKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEGD
VKSFSRVMVHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLVKQRGWDGFVEFFHVQ
DLEGG
A
polypeptide(L)
no
yes
(ACE)AA(DCY)LRRIGDCVNLRQKLLN(NH2)
XAACLRRIGDCVNLRQKLLNX
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Mcl1
10090
Mus musculus
562
Escherichia coli
1
1.73
28.75
VAPOR DIFFUSION, HANGING DROP
8.5
15% Peg 8000, 225 mM CaCl2, 2% Ethylene Glycol,50 mM Epps (pH 8.5), VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
repository
Initial release
Derived calculations
1
0
2012-12-05
1
1
2013-06-26
RCSB
Y
RCSB
2012-07-13
REL
REL
4BP
4,4'-bis(bromomethyl)biphenyl
HOH
water
Synthetic Construct
sample
Anticancer
Noxa BH3 peptide (cysteine-mediated cross-linked)
Polypeptide
BPH
4
3
4BP
4BP
101
B
HOH
4
4
HOH
HOH
401
A
HOH
5
4
HOH
HOH
402
A
HOH
26
4
HOH
HOH
403
A
HOH
30
4
HOH
HOH
404
A
HOH
37
4
HOH
HOH
405
A
HOH
40
4
HOH
HOH
406
A
HOH
44
4
HOH
HOH
407
A
HOH
47
4
HOH
HOH
408
A
HOH
49
4
HOH
HOH
409
A
HOH
53
4
HOH
HOH
410
A
HOH
54
4
HOH
HOH
411
A
HOH
55
4
HOH
HOH
412
A
HOH
59
4
HOH
HOH
413
A
HOH
60
4
HOH
HOH
414
A
HOH
61
4
HOH
HOH
415
A
HOH
62
4
HOH
HOH
416
A
HOH
64
4
HOH
HOH
417
A
HOH
66
4
HOH
HOH
418
A
HOH
68
4
HOH
HOH
419
A
HOH
70
4
HOH
HOH
420
A
HOH
71
4
HOH
HOH
421
A
HOH
73
4
HOH
HOH
422
A
HOH
74
4
HOH
HOH
423
A
HOH
75
4
HOH
HOH
424
A
HOH
76
4
HOH
HOH
425
A
HOH
77
4
HOH
HOH
426
A
HOH
78
4
HOH
HOH
427
A
HOH
79
4
HOH
HOH
428
A
HOH
80
4
HOH
HOH
429
A
HOH
81
4
HOH
HOH
430
A
HOH
82
4
HOH
HOH
431
A
HOH
83
4
HOH
HOH
432
A
HOH
84
4
HOH
HOH
433
A
HOH
86
4
HOH
HOH
434
A
HOH
87
4
HOH
HOH
435
A
HOH
69
4
HOH
HOH
201
B
HOH
72
4
HOH
HOH
202
B
HOH
88
4
HOH
HOH
203
B
HOH
90
4
HOH
HOH
204
B
n
1
163
A
n
2
164
A
n
3
165
A
n
4
166
A
n
5
167
A
n
6
168
A
n
7
169
A
n
8
170
A
GLU
171
n
9
GLU
171
A
ASP
172
n
10
ASP
172
A
ASP
173
n
11
ASP
173
A
LEU
174
n
12
LEU
174
A
TYR
175
n
13
TYR
175
A
ARG
176
n
14
ARG
176
A
GLN
177
n
15
GLN
177
A
SER
178
n
16
SER
178
A
LEU
179
n
17
LEU
179
A
GLU
180
n
18
GLU
180
A
ILE
181
n
19
ILE
181
A
ILE
182
n
20
ILE
182
A
SER
183
n
21
SER
183
A
ARG
184
n
22
ARG
184
A
TYR
185
n
23
TYR
185
A
LEU
186
n
24
LEU
186
A
ARG
187
n
25
ARG
187
A
GLU
188
n
26
GLU
188
A
GLN
189
n
27
GLN
189
A
ALA
190
n
28
ALA
190
A
THR
191
n
29
THR
191
A
n
30
192
A
n
31
193
A
n
32
194
A
n
33
195
A
n
34
196
A
n
35
197
A
n
36
198
A
n
37
199
A
n
38
200
A
n
39
201
A
n
40
202
A
n
41
203
A
n
42
204
A
n
43
205
A
GLY
206
n
44
GLY
206
A
ARG
207
n
45
ARG
207
A
ARG
208
n
46
ARG
208
A
ALA
209
n
47
ALA
209
A
LEU
210
n
48
LEU
210
A
GLU
211
n
49
GLU
211
A
THR
212
n
50
THR
212
A
LEU
213
n
51
LEU
213
A
ARG
214
n
52
ARG
214
A
ARG
215
n
53
ARG
215
A
VAL
216
n
54
VAL
216
A
GLY
217
n
55
GLY
217
A
ASP
218
n
56
ASP
218
A
GLY
219
n
57
GLY
219
A
VAL
220
n
58
VAL
220
A
GLN
221
n
59
GLN
221
A
ARG
222
n
60
ARG
222
A
ASN
223
n
61
ASN
223
A
HIS
224
n
62
HIS
224
A
GLU
225
n
63
GLU
225
A
THR
226
n
64
THR
226
A
ALA
227
n
65
ALA
227
A
PHE
228
n
66
PHE
228
A
GLN
229
n
67
GLN
229
A
GLY
230
n
68
GLY
230
A
MET
231
n
69
MET
231
A
LEU
232
n
70
LEU
232
A
ARG
233
n
71
ARG
233
A
LYS
234
n
72
LYS
234
A
n
73
235
A
n
74
236
A
n
75
237
A
n
76
238
A
n
77
239
A
n
78
240
A
n
79
241
A
n
80
242
A
n
81
243
A
LYS
244
n
82
LYS
244
A
SER
245
n
83
SER
245
A
PHE
246
n
84
PHE
246
A
SER
247
n
85
SER
247
A
ARG
248
n
86
ARG
248
A
VAL
249
n
87
VAL
249
A
MET
250
n
88
MET
250
A
VAL
251
n
89
VAL
251
A
HIS
252
n
90
HIS
252
A
VAL
253
n
91
VAL
253
A
PHE
254
n
92
PHE
254
A
LYS
255
n
93
LYS
255
A
ASP
256
n
94
ASP
256
A
GLY
257
n
95
GLY
257
A
VAL
258
n
96
VAL
258
A
THR
259
n
97
THR
259
A
ASN
260
n
98
ASN
260
A
TRP
261
n
99
TRP
261
A
GLY
262
n
100
GLY
262
A
ARG
263
n
101
ARG
263
A
ILE
264
n
102
ILE
264
A
VAL
265
n
103
VAL
265
A
THR
266
n
104
THR
266
A
LEU
267
n
105
LEU
267
A
ILE
268
n
106
ILE
268
A
SER
269
n
107
SER
269
A
PHE
270
n
108
PHE
270
A
GLY
271
n
109
GLY
271
A
ALA
272
n
110
ALA
272
A
PHE
273
n
111
PHE
273
A
VAL
274
n
112
VAL
274
A
ALA
275
n
113
ALA
275
A
LYS
276
n
114
LYS
276
A
HIS
277
n
115
HIS
277
A
LEU
278
n
116
LEU
278
A
LYS
279
n
117
LYS
279
A
SER
280
n
118
SER
280
A
VAL
281
n
119
VAL
281
A
ASN
282
n
120
ASN
282
A
GLN
283
n
121
GLN
283
A
GLU
284
n
122
GLU
284
A
SER
285
n
123
SER
285
A
PHE
286
n
124
PHE
286
A
ILE
287
n
125
ILE
287
A
GLU
288
n
126
GLU
288
A
PRO
289
n
127
PRO
289
A
LEU
290
n
128
LEU
290
A
ALA
291
n
129
ALA
291
A
GLU
292
n
130
GLU
292
A
THR
293
n
131
THR
293
A
ILE
294
n
132
ILE
294
A
THR
295
n
133
THR
295
A
ASP
296
n
134
ASP
296
A
VAL
297
n
135
VAL
297
A
LEU
298
n
136
LEU
298
A
VAL
299
n
137
VAL
299
A
ARG
300
n
138
ARG
300
A
THR
301
n
139
THR
301
A
LYS
302
n
140
LYS
302
A
ARG
303
n
141
ARG
303
A
ASP
304
n
142
ASP
304
A
TRP
305
n
143
TRP
305
A
LEU
306
n
144
LEU
306
A
VAL
307
n
145
VAL
307
A
LYS
308
n
146
LYS
308
A
GLN
309
n
147
GLN
309
A
ARG
310
n
148
ARG
310
A
GLY
311
n
149
GLY
311
A
TRP
312
n
150
TRP
312
A
ASP
313
n
151
ASP
313
A
GLY
314
n
152
GLY
314
A
PHE
315
n
153
PHE
315
A
VAL
316
n
154
VAL
316
A
GLU
317
n
155
GLU
317
A
PHE
318
n
156
PHE
318
A
PHE
319
n
157
PHE
319
A
HIS
320
n
158
HIS
320
A
VAL
321
n
159
VAL
321
A
GLN
322
n
160
GLN
322
A
n
161
323
A
n
162
324
A
n
163
325
A
n
164
326
A
n
165
327
A
ACE
1
n
1
ACE
1
B
ALA
2
n
2
ALA
2
B
ALA
3
n
3
ALA
3
B
BPH
4
n
4
DCY
4
B
LEU
5
n
5
LEU
5
B
ARG
6
n
6
ARG
6
B
ARG
7
n
7
ARG
7
B
ILE
8
n
8
ILE
8
B
GLY
9
n
9
GLY
9
B
ASP
10
n
10
ASP
10
B
CYS
11
n
11
CYS
11
B
VAL
12
n
12
VAL
12
B
ASN
13
n
13
ASN
13
B
LEU
14
n
14
LEU
14
B
ARG
15
n
15
ARG
15
B
GLN
16
n
16
GLN
16
B
LYS
17
n
17
LYS
17
B
LEU
18
n
18
LEU
18
B
LEU
19
n
19
LEU
19
B
ASN
20
n
20
ASN
20
B
ASN
20
n
21
NH2
21
B
author_and_software_defined_assembly
PISA
2
dimeric
1960
-14
8170
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
LYS
244
A
CG
LYS
82
1
Y
1
A
CD
LYS
244
A
CD
LYS
82
1
Y
1
A
CE
LYS
244
A
CE
LYS
82
1
Y
1
A
NZ
LYS
244
A
NZ
LYS
82
1
Y
1
A
CG
LYS
255
A
CG
LYS
93
1
Y
1
A
CD
LYS
255
A
CD
LYS
93
1
Y
1
A
CE
LYS
255
A
CE
LYS
93
1
Y
1
A
NZ
LYS
255
A
NZ
LYS
93
1
Y
1
A
CG
ASN
282
A
CG
ASN
120
1
Y
1
A
OD1
ASN
282
A
OD1
ASN
120
1
Y
1
A
ND2
ASN
282
A
ND2
ASN
120
1
Y
1
A
CG
ARG
300
A
CG
ARG
138
1
Y
1
A
CD
ARG
300
A
CD
ARG
138
1
Y
1
A
NE
ARG
300
A
NE
ARG
138
1
Y
1
A
CZ
ARG
300
A
CZ
ARG
138
1
Y
1
A
NH1
ARG
300
A
NH1
ARG
138
1
Y
1
A
NH2
ARG
300
A
NH2
ARG
138
1
Y
1
A
GLY
163
A
GLY
1
1
Y
1
A
PRO
164
A
PRO
2
1
Y
1
A
LEU
165
A
LEU
3
1
Y
1
A
GLY
166
A
GLY
4
1
Y
1
A
SER
167
A
SER
5
1
Y
1
A
PRO
168
A
PRO
6
1
Y
1
A
GLU
169
A
GLU
7
1
Y
1
A
PHE
170
A
PHE
8
1
Y
1
A
GLY
192
A
GLY
30
1
Y
1
A
SER
193
A
SER
31
1
Y
1
A
LYS
194
A
LYS
32
1
Y
1
A
ASP
195
A
ASP
33
1
Y
1
A
SER
196
A
SER
34
1
Y
1
A
LYS
197
A
LYS
35
1
Y
1
A
PRO
198
A
PRO
36
1
Y
1
A
LEU
199
A
LEU
37
1
Y
1
A
GLY
200
A
GLY
38
1
Y
1
A
GLU
201
A
GLU
39
1
Y
1
A
ALA
202
A
ALA
40
1
Y
1
A
GLY
203
A
GLY
41
1
Y
1
A
ALA
204
A
ALA
42
1
Y
1
A
ALA
205
A
ALA
43
1
Y
1
A
LEU
235
A
LEU
73
1
Y
1
A
ASP
236
A
ASP
74
1
Y
1
A
ILE
237
A
ILE
75
1
Y
1
A
LYS
238
A
LYS
76
1
Y
1
A
ASN
239
A
ASN
77
1
Y
1
A
GLU
240
A
GLU
78
1
Y
1
A
GLY
241
A
GLY
79
1
Y
1
A
ASP
242
A
ASP
80
1
Y
1
A
VAL
243
A
VAL
81
1
Y
1
A
ASP
323
A
ASP
161
1
Y
1
A
LEU
324
A
LEU
162
1
Y
1
A
GLU
325
A
GLU
163
1
Y
1
A
GLY
326
A
GLY
164
1
Y
1
A
GLY
327
A
GLY
165
1
Y
1
A
A
OD2
NH1
ASP
ARG
172
303
1.95
1
A
A
OE1
O
GLU
HOH
171
421
2.15
1
A
A
SER
PHE
245
246
143.53
1
A
PHE
246
-36.15
-38.01
27.120
-0.18
-0.00
0.00
-1.36
0.00
1.54
0.947
0.923
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23879
0.19171
0.1972
0.19389
2.00
39.31
468
9357
9295
4.8
99.34
4.194
0.119
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.212
0.179
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
2.00
39.31
39
1255
14
0
1202
0.021
0.021
1237
1.789
1.959
1663
6.001
5.000
142
33.486
22.063
63
16.303
15.000
217
19.134
15.000
16
0.136
0.200
183
0.010
0.020
933
1.218
1.500
731
2.362
2.000
1169
3.791
3.000
506
6.258
4.500
494
0.271
0.202
2.052
39
652
20
99.00
2.0
39.31
4G35
9850
9801
0.0
0.0
1
99.5
0.287
2.00
2.11
6.1
1
6.8
99.4
data collection
Blu-Ice
phasing
MOLREP
refinement
REFMAC
5.5.0088
data reduction
MOSFLM
data scaling
SCALA
Induced myeloid leukemia cell differentiation protein Mcl-1 homolog, Noxa BH3 (cysteine-mediated cross-linked)
Mcl-1 in complex with a biphenyl cross-linked Noxa peptide.
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
ASP
172
A
ASP
10
HELX_P
A
THR
191
A
THR
29
1
1
20
A
ARG
207
A
ARG
45
HELX_P
A
HIS
224
A
HIS
62
1
2
18
A
HIS
224
A
HIS
62
HELX_P
A
ARG
233
A
ARG
71
1
3
10
A
SER
245
A
SER
83
HELX_P
A
PHE
254
A
PHE
92
1
4
10
A
ASN
260
A
ASN
98
HELX_P
A
VAL
281
A
VAL
119
1
5
22
A
GLN
283
A
GLN
121
HELX_P
A
SER
285
A
SER
123
5
6
3
A
PHE
286
A
PHE
124
HELX_P
A
GLN
309
A
GLN
147
1
7
24
A
ARG
310
A
ARG
148
HELX_P
A
HIS
320
A
HIS
158
1
8
11
B
ALA
2
B
ALA
2
HELX_P
B
ASN
20
B
ASN
20
1
9
19
covale
1.335
B
ACE
1
B
C
ACE
1
1_555
B
ALA
2
B
N
ALA
2
1_555
covale
1.318
B
ALA
3
B
C
ALA
3
1_555
B
DCY
4
B
N
DCY
4
1_555
covale
1.330
B
DCY
4
B
C
DCY
4
1_555
B
LEU
5
B
N
LEU
5
1_555
covale
1.235
B
ASN
20
B
C
ASN
20
1_555
B
NH2
21
B
N
NH2
21
1_555
covale
1.816
B
DCY
4
B
SG
DCY
4
1_555
B
4BP
101
C
C01
4BP
1_555
covale
1.848
B
CYS
11
B
SG
CYS
11
1_555
B
4BP
101
C
C12
4BP
1_555
Apoptosis/Inhibitor
APOPTOSIS, BH3 domain, Bcl-2 family, Apoptosis-Inhibitor complex
MCL1_MOUSE
UNP
1
152
P97287
EDDLYRQSLEIISRYLREQATGSKDSKPLGEAGAAGRRALETLRRVGDGVQRNHETAFQGMLRKLDIKNEGDVKSFSRVM
VHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQESFIEPLAETITDVLVRTKRDWLVKQRGWDGFVEFFHVQDLEGG
4G35
PDB
2
4G35
152
308
4G35
171
327
P97287
A
1
9
165
1
21
4G35
1
21
4G35
B
2
1
21
1
EXPRESSION TAG
GLY
163
4G35
A
P97287
UNP
1
1
EXPRESSION TAG
PRO
164
4G35
A
P97287
UNP
2
1
EXPRESSION TAG
LEU
165
4G35
A
P97287
UNP
3
1
EXPRESSION TAG
GLY
166
4G35
A
P97287
UNP
4
1
EXPRESSION TAG
SER
167
4G35
A
P97287
UNP
5
1
EXPRESSION TAG
PRO
168
4G35
A
P97287
UNP
6
1
EXPRESSION TAG
GLU
169
4G35
A
P97287
UNP
7
1
EXPRESSION TAG
PHE
170
4G35
A
P97287
UNP
8
BINDING SITE FOR LINKED RESIDUES B 1 to 22
Software
24
A
GLU
171
A
GLU
9
24
4_445
A
GLU
188
A
GLU
26
24
4_455
A
THR
191
A
THR
29
24
4_455
A
ARG
215
A
ARG
53
24
4_455
A
ASP
218
A
ASP
56
24
4_455
A
GLY
219
A
GLY
57
24
4_455
A
HIS
224
A
HIS
62
24
1_555
A
MET
231
A
MET
69
24
1_555
A
VAL
249
A
VAL
87
24
1_555
A
HIS
252
A
HIS
90
24
1_555
A
VAL
253
A
VAL
91
24
1_555
A
ASP
256
A
ASP
94
24
1_555
A
ASN
260
A
ASN
98
24
1_555
A
TRP
261
A
TRP
99
24
1_555
A
GLY
262
A
GLY
100
24
1_555
A
ARG
263
A
ARG
101
24
1_555
A
THR
266
A
THR
104
24
1_555
A
LEU
267
A
LEU
105
24
1_555
A
PHE
318
A
PHE
156
24
1_555
A
PHE
319
A
PHE
157
24
1_555
A
VAL
321
A
VAL
159
24
1_555
A
GLN
322
A
GLN
160
24
4_455
A
HOH
403
D
HOH
24
4_455
B
HOH
201
E
HOH
24
1_555
19
P 21 21 21