0.032448
0.000000
0.000000
0.000000
0.025477
0.000000
0.000000
0.000000
0.024252
0.00000
0.00000
0.00000
Buer, B.C.
Meagher, J.L.
Stuckey, J.A.
Marsh, E.N.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
30.819
39.251
41.233
C6 H7 F6 N O2
239.116
5,5,5,5',5',5'-hexafluoro-L-leucine
L-peptide linking
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
21
1705
1715
10.1002/pro.2150
22930450
Comparison of the structures and stabilities of coiled-coil proteins containing hexafluoroleucine and t-butylalanine provides insight into the stabilizing effects of highly fluorinated amino acid side-chains.
2012
100
1
CCD
2012-02-02
MARMOSAIC 225 mm CCD
Diamond [111]
SINGLE WAVELENGTH
M
x-ray
1
0.97872
1.0
21-ID-F
APS
0.97872
SYNCHROTRON
APS BEAMLINE 21-ID-F
3533.529
alpha4F3d
2
syn
polymer
44.053
ACETYL GROUP
1
syn
non-polymer
18.015
water
49
nat
water
no
yes
GNADE(6FL)YKELED(6FL)QERLRK(6FL)RKKLRS
GNADEXYKELEDXQERLRKXRKKLRS
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
1.76
30.29
VAPOR DIFFUSION, HANGING DROP
7.8
55% PEG400, 0.1M Tris pH 7.8, vapor diffusion, hanging drop, temperature 293.15K
293.15
software
repository
Initial release
Database references
Refinement description
1
0
2012-10-31
1
1
2012-11-21
1
2
2017-11-15
RCSB
Y
RCSB
2012-07-13
REL
REL
ACE
ACETYL GROUP
HOH
water
synthesized
sample
ACE
1
2
ACE
ACE
101
B
HOH
7
3
HOH
HOH
101
A
HOH
9
3
HOH
HOH
102
A
HOH
13
3
HOH
HOH
103
A
HOH
16
3
HOH
HOH
104
A
HOH
18
3
HOH
HOH
105
A
HOH
19
3
HOH
HOH
106
A
HOH
20
3
HOH
HOH
107
A
HOH
23
3
HOH
HOH
108
A
HOH
24
3
HOH
HOH
109
A
HOH
25
3
HOH
HOH
110
A
HOH
26
3
HOH
HOH
111
A
HOH
27
3
HOH
HOH
112
A
HOH
28
3
HOH
HOH
113
A
HOH
31
3
HOH
HOH
114
A
HOH
34
3
HOH
HOH
115
A
HOH
35
3
HOH
HOH
116
A
HOH
36
3
HOH
HOH
117
A
HOH
38
3
HOH
HOH
118
A
HOH
41
3
HOH
HOH
119
A
HOH
42
3
HOH
HOH
120
A
HOH
43
3
HOH
HOH
121
A
HOH
45
3
HOH
HOH
122
A
HOH
1
3
HOH
HOH
201
B
HOH
2
3
HOH
HOH
202
B
HOH
3
3
HOH
HOH
203
B
HOH
4
3
HOH
HOH
204
B
HOH
5
3
HOH
HOH
205
B
HOH
6
3
HOH
HOH
206
B
HOH
8
3
HOH
HOH
207
B
HOH
10
3
HOH
HOH
208
B
HOH
11
3
HOH
HOH
209
B
HOH
12
3
HOH
HOH
210
B
HOH
14
3
HOH
HOH
211
B
HOH
15
3
HOH
HOH
212
B
HOH
17
3
HOH
HOH
213
B
HOH
21
3
HOH
HOH
214
B
HOH
22
3
HOH
HOH
215
B
HOH
29
3
HOH
HOH
216
B
HOH
30
3
HOH
HOH
217
B
HOH
32
3
HOH
HOH
218
B
HOH
33
3
HOH
HOH
219
B
HOH
37
3
HOH
HOH
220
B
HOH
39
3
HOH
HOH
221
B
HOH
40
3
HOH
HOH
222
B
HOH
44
3
HOH
HOH
223
B
HOH
46
3
HOH
HOH
224
B
HOH
47
3
HOH
HOH
225
B
HOH
48
3
HOH
HOH
226
B
HOH
49
3
HOH
HOH
227
B
GLY
1
n
1
GLY
1
A
ASN
2
n
2
ASN
2
A
ALA
3
n
3
ALA
3
A
ASP
4
n
4
ASP
4
A
GLU
5
n
5
GLU
5
A
6FL
6
n
6
6FL
6
A
TYR
7
n
7
TYR
7
A
LYS
8
n
8
LYS
8
A
GLU
9
n
9
GLU
9
A
LEU
10
n
10
LEU
10
A
GLU
11
n
11
GLU
11
A
ASP
12
n
12
ASP
12
A
6FL
13
n
13
6FL
13
A
GLN
14
n
14
GLN
14
A
GLU
15
n
15
GLU
15
A
ARG
16
n
16
ARG
16
A
LEU
17
n
17
LEU
17
A
ARG
18
n
18
ARG
18
A
LYS
19
n
19
LYS
19
A
6FL
20
n
20
6FL
20
A
ARG
21
n
21
ARG
21
A
LYS
22
n
22
LYS
22
A
LYS
23
n
23
LYS
23
A
LEU
24
n
24
LEU
24
A
ARG
25
n
25
ARG
25
A
SER
26
n
26
SER
26
A
GLY
1
n
1
GLY
1
B
ASN
2
n
2
ASN
2
B
ALA
3
n
3
ALA
3
B
ASP
4
n
4
ASP
4
B
GLU
5
n
5
GLU
5
B
6FL
6
n
6
6FL
6
B
TYR
7
n
7
TYR
7
B
LYS
8
n
8
LYS
8
B
GLU
9
n
9
GLU
9
B
LEU
10
n
10
LEU
10
B
GLU
11
n
11
GLU
11
B
ASP
12
n
12
ASP
12
B
6FL
13
n
13
6FL
13
B
GLN
14
n
14
GLN
14
B
GLU
15
n
15
GLU
15
B
ARG
16
n
16
ARG
16
B
LEU
17
n
17
LEU
17
B
ARG
18
n
18
ARG
18
B
LYS
19
n
19
LYS
19
B
6FL
20
n
20
6FL
20
B
ARG
21
n
21
ARG
21
B
LYS
22
n
22
LYS
22
B
LYS
23
n
23
LYS
23
B
LEU
24
n
24
LEU
24
B
ARG
25
n
25
ARG
25
B
SER
26
n
26
SER
26
B
1.3839
-0.0467
0.1573
2.3805
-1.3718
3.1191
-0.0067
0.0666
0.0591
-0.0726
-0.0439
-0.0590
0.0042
0.0884
0.0506
-0.0256
0.0043
-0.0040
-0.0330
0.0044
-0.0044
refined
-8.0006
-0.6372
14.9524
X-RAY DIFFRACTION
1.3224
0.3657
-0.6992
1.2428
-0.3640
4.1336
-0.0159
0.0531
-0.0121
-0.0365
-0.0183
0.0126
0.0946
-0.0103
0.0342
-0.0234
0.0044
0.0003
-0.0278
-0.0065
-0.0005
refined
-14.8816
-7.2778
17.4940
X-RAY DIFFRACTION
A
1
A
26
X-RAY DIFFRACTION
1
{ A|1 - A|26 }
B
1
B
26
X-RAY DIFFRACTION
2
{ B|1 - B|26 }
author_defined_assembly
4
tetrameric
software_defined_assembly
PISA
2
dimeric
1420
-8
4740
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_455
-x-1,-y,z
crystal symmetry operation
-30.8190000000
0.0000000000
0.0000000000
1
A
CE
LYS
23
A
CE
LYS
23
1
Y
1
A
NZ
LYS
23
A
NZ
LYS
23
1
Y
1
B
B
N
C
GLY
ACE
1
101
1.33
75.770
15.5709
5.530
-1.5063
0.0000
0.0000
1.0122
0.0000
0.4940
0.9500
0.9355
0.1872
0.1777
0.1782
1.1900
11.1600
831
16392
5.0700
1.000
0.500
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.127
1.1900
11.1600
49
534
3
0
482
193
SINUSOIDAL
2.000
18
HARMONIC
2.000
68
HARMONIC
5.000
520
HARMONIC
20.000
12
SEMIHARMONIC
5.000
46
SEMIHARMONIC
5.000
575
SEMIHARMONIC
4.000
0.009
520
HARMONIC
2.000
1.080
717
HARMONIC
2.000
2.270
12.400
0.1587
0.1376
0.1388
1.2700
161
2696
2857
8
5.6400
1.19
50.0
4G3B
16392
1
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
BUSTER 2.8.0
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
MD2
data reduction
HKL-2000
data scaling
HKL-2000
refinement
BUSTER
1.6.0
alpha4F3d
Crystal structure of the de novo designed fluorinated peptide alpha4F3d
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
The biological assembly is a tetramer generated from the dimer in the asymmetric unit by the operationsi: -x-1, -y, z
A
ASN
2
A
ASN
2
HELX_P
A
SER
26
A
SER
26
1
1
25
B
ASN
2
B
ASN
2
HELX_P
B
SER
26
B
SER
26
1
2
25
covale
1.339
A
GLU
5
A
C
GLU
5
1_555
A
6FL
6
A
N
6FL
6
1_555
covale
1.319
A
6FL
6
A
C
6FL
6
1_555
A
TYR
7
A
N
TYR
7
1_555
covale
1.338
A
ASP
12
A
C
ASP
12
1_555
A
6FL
13
A
N
6FL
13
1_555
covale
1.337
A
6FL
13
A
C
6FL
13
1_555
A
GLN
14
A
N
GLN
14
1_555
covale
1.331
A
A
LYS
19
A
C
LYS
19
1_555
A
6FL
20
A
N
6FL
20
1_555
covale
1.336
B
A
LYS
19
A
C
LYS
19
1_555
A
6FL
20
A
N
6FL
20
1_555
covale
1.337
A
6FL
20
A
C
6FL
20
1_555
A
ARG
21
A
N
ARG
21
1_555
covale
1.319
A
B
GLU
5
B
C
GLU
5
1_555
B
6FL
6
B
N
6FL
6
1_555
covale
1.348
B
B
GLU
5
B
C
GLU
5
1_555
B
6FL
6
B
N
6FL
6
1_555
covale
1.353
A
B
6FL
6
B
C
6FL
6
1_555
B
TYR
7
B
N
TYR
7
1_555
covale
1.317
B
B
6FL
6
B
C
6FL
6
1_555
B
TYR
7
B
N
TYR
7
1_555
covale
1.336
B
ASP
12
B
C
ASP
12
1_555
B
6FL
13
B
N
6FL
13
1_555
covale
1.331
B
6FL
13
B
C
6FL
13
1_555
B
GLN
14
B
N
GLN
14
1_555
covale
1.344
B
LYS
19
B
C
LYS
19
1_555
B
6FL
20
B
N
6FL
20
1_555
covale
1.344
B
6FL
20
B
C
6FL
20
1_555
B
ARG
21
B
N
ARG
21
1_555
DE NOVO PROTEIN
alpha helix, de novo designed, fluorinated protein, coiled-coil, DE NOVO PROTEIN
4G3B
PDB
1
4G3B
1
26
4G3B
1
26
4G3B
A
1
1
26
1
26
4G3B
1
26
4G3B
B
1
1
26
BINDING SITE FOR RESIDUE ACE B 101
Software
7
A
ASN
2
A
ASN
2
7
2_456
A
TYR
7
A
TYR
7
7
4_446
B
GLY
1
B
GLY
1
7
1_555
B
ASN
2
B
ASN
2
7
1_555
B
LYS
22
B
LYS
22
7
4_446
B
ARG
25
B
ARG
25
7
4_446
B
HOH
223
E
HOH
7
1_555
18
P 21 21 2