0.032448 0.000000 0.000000 0.000000 0.025477 0.000000 0.000000 0.000000 0.024252 0.00000 0.00000 0.00000 Buer, B.C. Meagher, J.L. Stuckey, J.A. Marsh, E.N.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 30.819 39.251 41.233 C6 H7 F6 N O2 239.116 5,5,5,5',5',5'-hexafluoro-L-leucine L-peptide linking C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 21 1705 1715 10.1002/pro.2150 22930450 Comparison of the structures and stabilities of coiled-coil proteins containing hexafluoroleucine and t-butylalanine provides insight into the stabilizing effects of highly fluorinated amino acid side-chains. 2012 100 1 CCD 2012-02-02 MARMOSAIC 225 mm CCD Diamond [111] SINGLE WAVELENGTH M x-ray 1 0.97872 1.0 21-ID-F APS 0.97872 SYNCHROTRON APS BEAMLINE 21-ID-F 3533.529 alpha4F3d 2 syn polymer 44.053 ACETYL GROUP 1 syn non-polymer 18.015 water 49 nat water no yes GNADE(6FL)YKELED(6FL)QERLRK(6FL)RKKLRS GNADEXYKELEDXQERLRKXRKKLRS A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n 1 1.76 30.29 VAPOR DIFFUSION, HANGING DROP 7.8 55% PEG400, 0.1M Tris pH 7.8, vapor diffusion, hanging drop, temperature 293.15K 293.15 software repository Initial release Database references Refinement description 1 0 2012-10-31 1 1 2012-11-21 1 2 2017-11-15 RCSB Y RCSB 2012-07-13 REL REL ACE ACETYL GROUP HOH water synthesized sample ACE 1 2 ACE ACE 101 B HOH 7 3 HOH HOH 101 A HOH 9 3 HOH HOH 102 A HOH 13 3 HOH HOH 103 A HOH 16 3 HOH HOH 104 A HOH 18 3 HOH HOH 105 A HOH 19 3 HOH HOH 106 A HOH 20 3 HOH HOH 107 A HOH 23 3 HOH HOH 108 A HOH 24 3 HOH HOH 109 A HOH 25 3 HOH HOH 110 A HOH 26 3 HOH HOH 111 A HOH 27 3 HOH HOH 112 A HOH 28 3 HOH HOH 113 A HOH 31 3 HOH HOH 114 A HOH 34 3 HOH HOH 115 A HOH 35 3 HOH HOH 116 A HOH 36 3 HOH HOH 117 A HOH 38 3 HOH HOH 118 A HOH 41 3 HOH HOH 119 A HOH 42 3 HOH HOH 120 A HOH 43 3 HOH HOH 121 A HOH 45 3 HOH HOH 122 A HOH 1 3 HOH HOH 201 B HOH 2 3 HOH HOH 202 B HOH 3 3 HOH HOH 203 B HOH 4 3 HOH HOH 204 B HOH 5 3 HOH HOH 205 B HOH 6 3 HOH HOH 206 B HOH 8 3 HOH HOH 207 B HOH 10 3 HOH HOH 208 B HOH 11 3 HOH HOH 209 B HOH 12 3 HOH HOH 210 B HOH 14 3 HOH HOH 211 B HOH 15 3 HOH HOH 212 B HOH 17 3 HOH HOH 213 B HOH 21 3 HOH HOH 214 B HOH 22 3 HOH HOH 215 B HOH 29 3 HOH HOH 216 B HOH 30 3 HOH HOH 217 B HOH 32 3 HOH HOH 218 B HOH 33 3 HOH HOH 219 B HOH 37 3 HOH HOH 220 B HOH 39 3 HOH HOH 221 B HOH 40 3 HOH HOH 222 B HOH 44 3 HOH HOH 223 B HOH 46 3 HOH HOH 224 B HOH 47 3 HOH HOH 225 B HOH 48 3 HOH HOH 226 B HOH 49 3 HOH HOH 227 B GLY 1 n 1 GLY 1 A ASN 2 n 2 ASN 2 A ALA 3 n 3 ALA 3 A ASP 4 n 4 ASP 4 A GLU 5 n 5 GLU 5 A 6FL 6 n 6 6FL 6 A TYR 7 n 7 TYR 7 A LYS 8 n 8 LYS 8 A GLU 9 n 9 GLU 9 A LEU 10 n 10 LEU 10 A GLU 11 n 11 GLU 11 A ASP 12 n 12 ASP 12 A 6FL 13 n 13 6FL 13 A GLN 14 n 14 GLN 14 A GLU 15 n 15 GLU 15 A ARG 16 n 16 ARG 16 A LEU 17 n 17 LEU 17 A ARG 18 n 18 ARG 18 A LYS 19 n 19 LYS 19 A 6FL 20 n 20 6FL 20 A ARG 21 n 21 ARG 21 A LYS 22 n 22 LYS 22 A LYS 23 n 23 LYS 23 A LEU 24 n 24 LEU 24 A ARG 25 n 25 ARG 25 A SER 26 n 26 SER 26 A GLY 1 n 1 GLY 1 B ASN 2 n 2 ASN 2 B ALA 3 n 3 ALA 3 B ASP 4 n 4 ASP 4 B GLU 5 n 5 GLU 5 B 6FL 6 n 6 6FL 6 B TYR 7 n 7 TYR 7 B LYS 8 n 8 LYS 8 B GLU 9 n 9 GLU 9 B LEU 10 n 10 LEU 10 B GLU 11 n 11 GLU 11 B ASP 12 n 12 ASP 12 B 6FL 13 n 13 6FL 13 B GLN 14 n 14 GLN 14 B GLU 15 n 15 GLU 15 B ARG 16 n 16 ARG 16 B LEU 17 n 17 LEU 17 B ARG 18 n 18 ARG 18 B LYS 19 n 19 LYS 19 B 6FL 20 n 20 6FL 20 B ARG 21 n 21 ARG 21 B LYS 22 n 22 LYS 22 B LYS 23 n 23 LYS 23 B LEU 24 n 24 LEU 24 B ARG 25 n 25 ARG 25 B SER 26 n 26 SER 26 B 1.3839 -0.0467 0.1573 2.3805 -1.3718 3.1191 -0.0067 0.0666 0.0591 -0.0726 -0.0439 -0.0590 0.0042 0.0884 0.0506 -0.0256 0.0043 -0.0040 -0.0330 0.0044 -0.0044 refined -8.0006 -0.6372 14.9524 X-RAY DIFFRACTION 1.3224 0.3657 -0.6992 1.2428 -0.3640 4.1336 -0.0159 0.0531 -0.0121 -0.0365 -0.0183 0.0126 0.0946 -0.0103 0.0342 -0.0234 0.0044 0.0003 -0.0278 -0.0065 -0.0005 refined -14.8816 -7.2778 17.4940 X-RAY DIFFRACTION A 1 A 26 X-RAY DIFFRACTION 1 { A|1 - A|26 } B 1 B 26 X-RAY DIFFRACTION 2 { B|1 - B|26 } author_defined_assembly 4 tetrameric software_defined_assembly PISA 2 dimeric 1420 -8 4740 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_455 -x-1,-y,z crystal symmetry operation -30.8190000000 0.0000000000 0.0000000000 1 A CE LYS 23 A CE LYS 23 1 Y 1 A NZ LYS 23 A NZ LYS 23 1 Y 1 B B N C GLY ACE 1 101 1.33 75.770 15.5709 5.530 -1.5063 0.0000 0.0000 1.0122 0.0000 0.4940 0.9500 0.9355 0.1872 0.1777 0.1782 1.1900 11.1600 831 16392 5.0700 1.000 0.500 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.127 1.1900 11.1600 49 534 3 0 482 193 SINUSOIDAL 2.000 18 HARMONIC 2.000 68 HARMONIC 5.000 520 HARMONIC 20.000 12 SEMIHARMONIC 5.000 46 SEMIHARMONIC 5.000 575 SEMIHARMONIC 4.000 0.009 520 HARMONIC 2.000 1.080 717 HARMONIC 2.000 2.270 12.400 0.1587 0.1376 0.1388 1.2700 161 2696 2857 8 5.6400 1.19 50.0 4G3B 16392 1 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program refinement Gerard Bricogne buster-develop@GlobalPhasing.com http://www.globalphasing.com/buster/ BUSTER-TNT program BUSTER 2.8.0 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection MD2 data reduction HKL-2000 data scaling HKL-2000 refinement BUSTER 1.6.0 alpha4F3d Crystal structure of the de novo designed fluorinated peptide alpha4F3d 1 N N 1 N N 2 N N 3 N N 3 N N The biological assembly is a tetramer generated from the dimer in the asymmetric unit by the operationsi: -x-1, -y, z A ASN 2 A ASN 2 HELX_P A SER 26 A SER 26 1 1 25 B ASN 2 B ASN 2 HELX_P B SER 26 B SER 26 1 2 25 covale 1.339 A GLU 5 A C GLU 5 1_555 A 6FL 6 A N 6FL 6 1_555 covale 1.319 A 6FL 6 A C 6FL 6 1_555 A TYR 7 A N TYR 7 1_555 covale 1.338 A ASP 12 A C ASP 12 1_555 A 6FL 13 A N 6FL 13 1_555 covale 1.337 A 6FL 13 A C 6FL 13 1_555 A GLN 14 A N GLN 14 1_555 covale 1.331 A A LYS 19 A C LYS 19 1_555 A 6FL 20 A N 6FL 20 1_555 covale 1.336 B A LYS 19 A C LYS 19 1_555 A 6FL 20 A N 6FL 20 1_555 covale 1.337 A 6FL 20 A C 6FL 20 1_555 A ARG 21 A N ARG 21 1_555 covale 1.319 A B GLU 5 B C GLU 5 1_555 B 6FL 6 B N 6FL 6 1_555 covale 1.348 B B GLU 5 B C GLU 5 1_555 B 6FL 6 B N 6FL 6 1_555 covale 1.353 A B 6FL 6 B C 6FL 6 1_555 B TYR 7 B N TYR 7 1_555 covale 1.317 B B 6FL 6 B C 6FL 6 1_555 B TYR 7 B N TYR 7 1_555 covale 1.336 B ASP 12 B C ASP 12 1_555 B 6FL 13 B N 6FL 13 1_555 covale 1.331 B 6FL 13 B C 6FL 13 1_555 B GLN 14 B N GLN 14 1_555 covale 1.344 B LYS 19 B C LYS 19 1_555 B 6FL 20 B N 6FL 20 1_555 covale 1.344 B 6FL 20 B C 6FL 20 1_555 B ARG 21 B N ARG 21 1_555 DE NOVO PROTEIN alpha helix, de novo designed, fluorinated protein, coiled-coil, DE NOVO PROTEIN 4G3B PDB 1 4G3B 1 26 4G3B 1 26 4G3B A 1 1 26 1 26 4G3B 1 26 4G3B B 1 1 26 BINDING SITE FOR RESIDUE ACE B 101 Software 7 A ASN 2 A ASN 2 7 2_456 A TYR 7 A TYR 7 7 4_446 B GLY 1 B GLY 1 7 1_555 B ASN 2 B ASN 2 7 1_555 B LYS 22 B LYS 22 7 4_446 B ARG 25 B ARG 25 7 4_446 B HOH 223 E HOH 7 1_555 18 P 21 21 2