0.026055
0.000000
0.000000
0.000000
0.015450
0.000000
0.000000
0.000000
0.009198
0.00000
0.00000
0.00000
Darst, S.A.
Osmundson, J.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
38.381
64.724
108.721
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
151
1005
1016
10.1016/j.cell.2012.10.034
23178120
Promoter-specific transcription inhibition in Staphylococcus aureus by a phage protein.
2012
10.2210/pdb4g6d/pdb
pdb_00004g6d
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
70
1
70
1
CCD
2009-10-19
ADSC QUANTUM 315
CCD
ADSC QUANTUM 315
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.97949
1.0
0.97918
1.0
24-ID-C
APS
0.97949
SYNCHROTRON
APS BEAMLINE 24-ID-C
24-ID-C
APS
0.97918
SYNCHROTRON
APS BEAMLINE 24-ID-C
8731.062
RNA polymerase sigma factor rpoD
UNP Residues 296-368
1
man
polymer
23226.383
ORF067
1
man
polymer
18.015
water
54
nat
water
no
no
MKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD
MKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD
A
polypeptide(L)
no
no
MKLKILDKDNATLNVFHRNKEHKTIDNVPTANLVDWYPLSNAYEYKLSRNGEYLELKRLRSTLPSSYGLDDNNQDIIRDN
NHRCKIGYWYNPAVRKDNLKIIEKAKQYGLPIITEEYDANTVEQGFRDIGVIFQSLKTIVVTRYLEGKTEEELRIFNMKS
EESQLNEALKESDFSVDLTYSDLGQIYNMLLLMKKISK
MKLKILDKDNATLNVFHRNKEHKTIDNVPTANLVDWYPLSNAYEYKLSRNGEYLELKRLRSTLPSSYGLDDNNQDIIRDN
NHRCKIGYWYNPAVRKDNLKIIEKAKQYGLPIITEEYDANTVEQGFRDIGVIFQSLKTIVVTRYLEGKTEEELRIFNMKS
EESQLNEALKESDFSVDLTYSDLGQIYNMLLLMKKISK
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NCTC 8325
sample
rpoD, plaC, sigA, SAOUHSC_01662
93061
Staphylococcus aureus subsp. aureus
562
Escherichia coli
sample
292029
Staphylococcus phage G1
562
Escherichia coli
2
2.11
41.78
VAPOR DIFFUSION, SITTING DROP
6.5
0.1M MES pH 6.5, 10% (w/v) PEG5000MME, 12% (v/v) Isopropanol, VAPOR DIFFUSION, SITTING DROP, temperature 295K
295
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Data collection
Database references
1
0
2013-01-23
1
1
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2012-07-18
REL
REL
HOH
water
HOH
8
3
HOH
HOH
701
A
HOH
9
3
HOH
HOH
702
A
HOH
11
3
HOH
HOH
703
A
HOH
13
3
HOH
HOH
704
A
HOH
19
3
HOH
HOH
705
A
HOH
27
3
HOH
HOH
706
A
HOH
30
3
HOH
HOH
707
A
HOH
39
3
HOH
HOH
708
A
HOH
40
3
HOH
HOH
709
A
HOH
44
3
HOH
HOH
710
A
HOH
45
3
HOH
HOH
711
A
HOH
1
3
HOH
HOH
201
B
HOH
2
3
HOH
HOH
202
B
HOH
3
3
HOH
HOH
203
B
HOH
4
3
HOH
HOH
204
B
HOH
5
3
HOH
HOH
205
B
HOH
6
3
HOH
HOH
206
B
HOH
7
3
HOH
HOH
207
B
HOH
10
3
HOH
HOH
208
B
HOH
12
3
HOH
HOH
209
B
HOH
14
3
HOH
HOH
210
B
HOH
15
3
HOH
HOH
211
B
HOH
16
3
HOH
HOH
212
B
HOH
17
3
HOH
HOH
213
B
HOH
18
3
HOH
HOH
214
B
HOH
20
3
HOH
HOH
215
B
HOH
21
3
HOH
HOH
216
B
HOH
22
3
HOH
HOH
217
B
HOH
23
3
HOH
HOH
218
B
HOH
24
3
HOH
HOH
219
B
HOH
25
3
HOH
HOH
220
B
HOH
26
3
HOH
HOH
221
B
HOH
28
3
HOH
HOH
222
B
HOH
29
3
HOH
HOH
223
B
HOH
31
3
HOH
HOH
224
B
HOH
32
3
HOH
HOH
225
B
HOH
33
3
HOH
HOH
226
B
HOH
34
3
HOH
HOH
227
B
HOH
35
3
HOH
HOH
228
B
HOH
36
3
HOH
HOH
229
B
HOH
37
3
HOH
HOH
230
B
HOH
38
3
HOH
HOH
231
B
HOH
41
3
HOH
HOH
232
B
HOH
42
3
HOH
HOH
233
B
HOH
43
3
HOH
HOH
234
B
HOH
46
3
HOH
HOH
235
B
HOH
47
3
HOH
HOH
236
B
HOH
48
3
HOH
HOH
237
B
HOH
49
3
HOH
HOH
238
B
HOH
50
3
HOH
HOH
239
B
HOH
51
3
HOH
HOH
240
B
HOH
52
3
HOH
HOH
241
B
HOH
53
3
HOH
HOH
242
B
HOH
54
3
HOH
HOH
243
B
ALA
538
n
1
MET
538
A
ALA
539
n
2
LYS
539
A
ALA
540
n
3
GLU
540
A
ALA
541
n
4
GLN
541
A
LEU
542
n
5
LEU
542
A
ALA
543
n
6
GLU
543
A
ALA
544
n
7
ASP
544
A
VAL
545
n
8
VAL
545
A
LEU
546
n
9
LEU
546
A
ASP
547
n
10
ASP
547
A
THR
548
n
11
THR
548
A
LEU
549
n
12
LEU
549
A
THR
550
n
13
THR
550
A
ASP
551
n
14
ASP
551
A
ARG
552
n
15
ARG
552
A
GLU
553
n
16
GLU
553
A
GLU
554
n
17
GLU
554
A
ASN
555
n
18
ASN
555
A
VAL
556
n
19
VAL
556
A
LEU
557
n
20
LEU
557
A
ARG
558
n
21
ARG
558
A
LEU
559
n
22
LEU
559
A
ARG
560
n
23
ARG
560
A
PHE
561
n
24
PHE
561
A
GLY
562
n
25
GLY
562
A
LEU
563
n
26
LEU
563
A
ASP
564
n
27
ASP
564
A
ASP
565
n
28
ASP
565
A
GLY
566
n
29
GLY
566
A
ARG
567
n
30
ARG
567
A
THR
568
n
31
THR
568
A
ARG
569
n
32
ARG
569
A
THR
570
n
33
THR
570
A
LEU
571
n
34
LEU
571
A
GLU
572
n
35
GLU
572
A
GLU
573
n
36
GLU
573
A
VAL
574
n
37
VAL
574
A
GLY
575
n
38
GLY
575
A
LYS
576
n
39
LYS
576
A
VAL
577
n
40
VAL
577
A
PHE
578
n
41
PHE
578
A
GLY
579
n
42
GLY
579
A
VAL
580
n
43
VAL
580
A
THR
581
n
44
THR
581
A
ARG
582
n
45
ARG
582
A
GLU
583
n
46
GLU
583
A
ARG
584
n
47
ARG
584
A
ILE
585
n
48
ILE
585
A
ARG
586
n
49
ARG
586
A
GLN
587
n
50
GLN
587
A
ILE
588
n
51
ILE
588
A
GLU
589
n
52
GLU
589
A
ALA
590
n
53
ALA
590
A
LYS
591
n
54
LYS
591
A
ALA
592
n
55
ALA
592
A
LEU
593
n
56
LEU
593
A
ALA
594
n
57
ARG
594
A
LYS
595
n
58
LYS
595
A
LEU
596
n
59
LEU
596
A
ARG
597
n
60
ARG
597
A
ALA
598
n
61
HIS
598
A
PRO
599
n
62
PRO
599
A
n
63
600
A
n
64
601
A
n
65
602
A
n
66
603
A
n
67
604
A
n
68
605
A
n
69
606
A
n
70
607
A
n
71
608
A
n
72
609
A
n
73
610
A
MET
1
n
1
MET
1
B
LYS
2
n
2
LYS
2
B
LEU
3
n
3
LEU
3
B
LYS
4
n
4
LYS
4
B
ILE
5
n
5
ILE
5
B
LEU
6
n
6
LEU
6
B
ASP
7
n
7
ASP
7
B
ALA
8
n
8
LYS
8
B
ASP
9
n
9
ASP
9
B
ASN
10
n
10
ASN
10
B
ALA
11
n
11
ALA
11
B
THR
12
n
12
THR
12
B
LEU
13
n
13
LEU
13
B
ASN
14
n
14
ASN
14
B
VAL
15
n
15
VAL
15
B
PHE
16
n
16
PHE
16
B
HIS
17
n
17
HIS
17
B
ARG
18
n
18
ARG
18
B
ASN
19
n
19
ASN
19
B
LYS
20
n
20
LYS
20
B
GLU
21
n
21
GLU
21
B
HIS
22
n
22
HIS
22
B
LYS
23
n
23
LYS
23
B
THR
24
n
24
THR
24
B
ILE
25
n
25
ILE
25
B
ASP
26
n
26
ASP
26
B
ASN
27
n
27
ASN
27
B
VAL
28
n
28
VAL
28
B
PRO
29
n
29
PRO
29
B
THR
30
n
30
THR
30
B
ALA
31
n
31
ALA
31
B
ASN
32
n
32
ASN
32
B
LEU
33
n
33
LEU
33
B
VAL
34
n
34
VAL
34
B
ASP
35
n
35
ASP
35
B
TRP
36
n
36
TRP
36
B
TYR
37
n
37
TYR
37
B
PRO
38
n
38
PRO
38
B
LEU
39
n
39
LEU
39
B
SER
40
n
40
SER
40
B
ASN
41
n
41
ASN
41
B
ALA
42
n
42
ALA
42
B
TYR
43
n
43
TYR
43
B
GLU
44
n
44
GLU
44
B
TYR
45
n
45
TYR
45
B
LYS
46
n
46
LYS
46
B
LEU
47
n
47
LEU
47
B
SER
48
n
48
SER
48
B
ALA
49
n
49
ARG
49
B
ASN
50
n
50
ASN
50
B
GLY
51
n
51
GLY
51
B
GLU
52
n
52
GLU
52
B
TYR
53
n
53
TYR
53
B
LEU
54
n
54
LEU
54
B
GLU
55
n
55
GLU
55
B
LEU
56
n
56
LEU
56
B
LYS
57
n
57
LYS
57
B
ARG
58
n
58
ARG
58
B
LEU
59
n
59
LEU
59
B
ARG
60
n
60
ARG
60
B
SER
61
n
61
SER
61
B
THR
62
n
62
THR
62
B
LEU
63
n
63
LEU
63
B
PRO
64
n
64
PRO
64
B
SER
65
n
65
SER
65
B
SER
66
n
66
SER
66
B
TYR
67
n
67
TYR
67
B
GLY
68
n
68
GLY
68
B
LEU
69
n
69
LEU
69
B
ASP
70
n
70
ASP
70
B
ASP
71
n
71
ASP
71
B
ASN
72
n
72
ASN
72
B
ASN
73
n
73
ASN
73
B
GLN
74
n
74
GLN
74
B
ASP
75
n
75
ASP
75
B
ILE
76
n
76
ILE
76
B
ILE
77
n
77
ILE
77
B
ARG
78
n
78
ARG
78
B
ASP
79
n
79
ASP
79
B
ASN
80
n
80
ASN
80
B
ASN
81
n
81
ASN
81
B
HIS
82
n
82
HIS
82
B
ARG
83
n
83
ARG
83
B
CYS
84
n
84
CYS
84
B
LYS
85
n
85
LYS
85
B
ILE
86
n
86
ILE
86
B
GLY
87
n
87
GLY
87
B
TYR
88
n
88
TYR
88
B
TRP
89
n
89
TRP
89
B
TYR
90
n
90
TYR
90
B
ASN
91
n
91
ASN
91
B
PRO
92
n
92
PRO
92
B
ALA
93
n
93
ALA
93
B
VAL
94
n
94
VAL
94
B
ARG
95
n
95
ARG
95
B
LYS
96
n
96
LYS
96
B
ASP
97
n
97
ASP
97
B
ASN
98
n
98
ASN
98
B
LEU
99
n
99
LEU
99
B
LYS
100
n
100
LYS
100
B
ILE
101
n
101
ILE
101
B
ILE
102
n
102
ILE
102
B
GLU
103
n
103
GLU
103
B
LYS
104
n
104
LYS
104
B
ALA
105
n
105
ALA
105
B
LYS
106
n
106
LYS
106
B
GLN
107
n
107
GLN
107
B
TYR
108
n
108
TYR
108
B
GLY
109
n
109
GLY
109
B
LEU
110
n
110
LEU
110
B
PRO
111
n
111
PRO
111
B
ILE
112
n
112
ILE
112
B
ILE
113
n
113
ILE
113
B
THR
114
n
114
THR
114
B
GLU
115
n
115
GLU
115
B
GLU
116
n
116
GLU
116
B
TYR
117
n
117
TYR
117
B
ASP
118
n
118
ASP
118
B
ALA
119
n
119
ALA
119
B
ASN
120
n
120
ASN
120
B
THR
121
n
121
THR
121
B
VAL
122
n
122
VAL
122
B
GLU
123
n
123
GLU
123
B
GLN
124
n
124
GLN
124
B
GLY
125
n
125
GLY
125
B
PHE
126
n
126
PHE
126
B
ARG
127
n
127
ARG
127
B
ASP
128
n
128
ASP
128
B
ILE
129
n
129
ILE
129
B
GLY
130
n
130
GLY
130
B
VAL
131
n
131
VAL
131
B
ILE
132
n
132
ILE
132
B
PHE
133
n
133
PHE
133
B
GLN
134
n
134
GLN
134
B
SER
135
n
135
SER
135
B
LEU
136
n
136
LEU
136
B
LYS
137
n
137
LYS
137
B
THR
138
n
138
THR
138
B
ILE
139
n
139
ILE
139
B
VAL
140
n
140
VAL
140
B
VAL
141
n
141
VAL
141
B
THR
142
n
142
THR
142
B
ARG
143
n
143
ARG
143
B
TYR
144
n
144
TYR
144
B
LEU
145
n
145
LEU
145
B
GLU
146
n
146
GLU
146
B
GLY
147
n
147
GLY
147
B
ALA
148
n
148
LYS
148
B
THR
149
n
149
THR
149
B
GLU
150
n
150
GLU
150
B
ALA
151
n
151
GLU
151
B
ALA
152
n
152
GLU
152
B
LEU
153
n
153
LEU
153
B
ALA
154
n
154
ARG
154
B
ILE
155
n
155
ILE
155
B
PHE
156
n
156
PHE
156
B
ASN
157
n
157
ASN
157
B
MET
158
n
158
MET
158
B
LYS
159
n
159
LYS
159
B
SER
160
n
160
SER
160
B
GLU
161
n
161
GLU
161
B
GLU
162
n
162
GLU
162
B
SER
163
n
163
SER
163
B
GLN
164
n
164
GLN
164
B
LEU
165
n
165
LEU
165
B
ASN
166
n
166
ASN
166
B
GLU
167
n
167
GLU
167
B
ALA
168
n
168
ALA
168
B
LEU
169
n
169
LEU
169
B
ALA
170
n
170
LYS
170
B
GLU
171
n
171
GLU
171
B
SER
172
n
172
SER
172
B
ALA
173
n
173
ASP
173
B
PHE
174
n
174
PHE
174
B
SER
175
n
175
SER
175
B
VAL
176
n
176
VAL
176
B
ASP
177
n
177
ASP
177
B
LEU
178
n
178
LEU
178
B
THR
179
n
179
THR
179
B
TYR
180
n
180
TYR
180
B
SER
181
n
181
SER
181
B
ASP
182
n
182
ASP
182
B
LEU
183
n
183
LEU
183
B
GLY
184
n
184
GLY
184
B
GLN
185
n
185
GLN
185
B
ILE
186
n
186
ILE
186
B
TYR
187
n
187
TYR
187
B
ASN
188
n
188
ASN
188
B
MET
189
n
189
MET
189
B
LEU
190
n
190
LEU
190
B
LEU
191
n
191
LEU
191
B
LEU
192
n
192
LEU
192
B
MET
193
n
193
MET
193
B
LYS
194
n
194
LYS
194
B
LYS
195
n
195
LYS
195
B
ILE
196
n
196
ILE
196
B
SER
197
n
197
SER
197
B
ALA
198
n
198
LYS
198
B
2.8767
-0.0810
0.5392
5.4423
0.6109
3.2963
0.1004
0.0011
-0.4375
-0.0959
0.2118
-0.9005
0.7016
0.1125
-0.2907
0.4204
0.0136
-0.0724
0.3242
-0.0099
0.5440
refined
38.1898
-11.1416
14.7924
X-RAY DIFFRACTION
2.9488
-1.4534
-0.5170
7.3490
1.3844
5.8790
-0.1021
-0.4062
0.5474
1.2323
0.0300
0.4663
-0.2377
-0.3929
0.0224
0.4814
-0.0347
0.0318
0.4426
-0.1365
0.4719
refined
27.3051
6.7495
27.1013
X-RAY DIFFRACTION
0.9814
-0.6070
0.0203
2.1533
-2.2465
4.4420
-0.0396
0.4738
-0.0594
-0.7918
-0.0707
0.3517
0.0909
-0.3695
0.0203
0.4998
-0.0314
-0.0929
0.5013
-0.0415
0.4169
refined
27.1447
-1.4046
6.9925
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'B' and resseq 92:198
X-RAY DIFFRACTION
2
chain 'B' and resseq 1:91
X-RAY DIFFRACTION
3
chain 'A' and resseq 538:599
software_defined_assembly
PISA
2
dimeric
2540
-2
13090
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
N
LYS
4
B
N
LYS
4
B
O
THR
12
B
O
THR
12
B
N
ALA
11
B
N
ALA
11
B
O
VAL
28
B
O
VAL
28
B
N
LYS
46
B
N
LYS
46
B
O
GLU
55
B
O
GLU
55
B
N
LEU
54
B
N
LEU
54
B
O
CYS
84
B
O
CYS
84
1
A
CG
MET
538
A
CG
MET
1
1
Y
1
A
SD
MET
538
A
SD
MET
1
1
Y
1
A
CE
MET
538
A
CE
MET
1
1
Y
1
A
CG
LYS
539
A
CG
LYS
2
1
Y
1
A
CD
LYS
539
A
CD
LYS
2
1
Y
1
A
CE
LYS
539
A
CE
LYS
2
1
Y
1
A
NZ
LYS
539
A
NZ
LYS
2
1
Y
1
A
CG
GLU
540
A
CG
GLU
3
1
Y
1
A
CD
GLU
540
A
CD
GLU
3
1
Y
1
A
OE1
GLU
540
A
OE1
GLU
3
1
Y
1
A
OE2
GLU
540
A
OE2
GLU
3
1
Y
1
A
CG
GLN
541
A
CG
GLN
4
1
Y
1
A
CD
GLN
541
A
CD
GLN
4
1
Y
1
A
OE1
GLN
541
A
OE1
GLN
4
1
Y
1
A
NE2
GLN
541
A
NE2
GLN
4
1
Y
1
A
CG
GLU
543
A
CG
GLU
6
1
Y
1
A
CD
GLU
543
A
CD
GLU
6
1
Y
1
A
OE1
GLU
543
A
OE1
GLU
6
1
Y
1
A
OE2
GLU
543
A
OE2
GLU
6
1
Y
1
A
CG
ASP
544
A
CG
ASP
7
1
Y
1
A
OD1
ASP
544
A
OD1
ASP
7
1
Y
1
A
OD2
ASP
544
A
OD2
ASP
7
1
Y
1
A
CG
ARG
594
A
CG
ARG
57
1
Y
1
A
CD
ARG
594
A
CD
ARG
57
1
Y
1
A
NE
ARG
594
A
NE
ARG
57
1
Y
1
A
CZ
ARG
594
A
CZ
ARG
57
1
Y
1
A
NH1
ARG
594
A
NH1
ARG
57
1
Y
1
A
NH2
ARG
594
A
NH2
ARG
57
1
Y
1
A
CG
HIS
598
A
CG
HIS
61
1
Y
1
A
ND1
HIS
598
A
ND1
HIS
61
1
Y
1
A
CD2
HIS
598
A
CD2
HIS
61
1
Y
1
A
CE1
HIS
598
A
CE1
HIS
61
1
Y
1
A
NE2
HIS
598
A
NE2
HIS
61
1
Y
1
B
CG
LYS
8
B
CG
LYS
8
1
Y
1
B
CD
LYS
8
B
CD
LYS
8
1
Y
1
B
CE
LYS
8
B
CE
LYS
8
1
Y
1
B
NZ
LYS
8
B
NZ
LYS
8
1
Y
1
B
CG
ARG
49
B
CG
ARG
49
1
Y
1
B
CD
ARG
49
B
CD
ARG
49
1
Y
1
B
NE
ARG
49
B
NE
ARG
49
1
Y
1
B
CZ
ARG
49
B
CZ
ARG
49
1
Y
1
B
NH1
ARG
49
B
NH1
ARG
49
1
Y
1
B
NH2
ARG
49
B
NH2
ARG
49
1
Y
1
B
CG
LYS
148
B
CG
LYS
148
1
Y
1
B
CD
LYS
148
B
CD
LYS
148
1
Y
1
B
CE
LYS
148
B
CE
LYS
148
1
Y
1
B
NZ
LYS
148
B
NZ
LYS
148
1
Y
1
B
CG
GLU
151
B
CG
GLU
151
1
Y
1
B
CD
GLU
151
B
CD
GLU
151
1
Y
1
B
OE1
GLU
151
B
OE1
GLU
151
1
Y
1
B
OE2
GLU
151
B
OE2
GLU
151
1
Y
1
B
CG
GLU
152
B
CG
GLU
152
1
Y
1
B
CD
GLU
152
B
CD
GLU
152
1
Y
1
B
OE1
GLU
152
B
OE1
GLU
152
1
Y
1
B
OE2
GLU
152
B
OE2
GLU
152
1
Y
1
B
CG
ARG
154
B
CG
ARG
154
1
Y
1
B
CD
ARG
154
B
CD
ARG
154
1
Y
1
B
NE
ARG
154
B
NE
ARG
154
1
Y
1
B
CZ
ARG
154
B
CZ
ARG
154
1
Y
1
B
NH1
ARG
154
B
NH1
ARG
154
1
Y
1
B
NH2
ARG
154
B
NH2
ARG
154
1
Y
1
B
CG
LYS
170
B
CG
LYS
170
1
Y
1
B
CD
LYS
170
B
CD
LYS
170
1
Y
1
B
CE
LYS
170
B
CE
LYS
170
1
Y
1
B
NZ
LYS
170
B
NZ
LYS
170
1
Y
1
B
CG
ASP
173
B
CG
ASP
173
1
Y
1
B
OD1
ASP
173
B
OD1
ASP
173
1
Y
1
B
OD2
ASP
173
B
OD2
ASP
173
1
Y
1
B
CG
LYS
198
B
CG
LYS
198
1
Y
1
B
CD
LYS
198
B
CD
LYS
198
1
Y
1
B
CE
LYS
198
B
CE
LYS
198
1
Y
1
B
NZ
LYS
198
B
NZ
LYS
198
1
Y
1
A
SER
600
A
SER
63
1
Y
1
A
ARG
601
A
ARG
64
1
Y
1
A
SER
602
A
SER
65
1
Y
1
A
LYS
603
A
LYS
66
1
Y
1
A
ARG
604
A
ARG
67
1
Y
1
A
LEU
605
A
LEU
68
1
Y
1
A
LYS
606
A
LYS
69
1
Y
1
A
ASP
607
A
ASP
70
1
Y
1
A
PHE
608
A
PHE
71
1
Y
1
A
MET
609
A
MET
72
1
Y
1
A
ASP
610
A
ASP
73
1
Y
1
B
B
O
OG1
GLU
THR
146
149
2.04
1
B
B
O
O
HOH
HOH
238
240
2.17
1
B
B
NZ
OE1
LYS
GLU
159
167
2.18
1
15.03
2.50
113.10
128.13
B
B
B
N
CA
C
GLY
GLY
GLY
147
147
147
N
1
B
ASN
19
50.84
-120.47
1
B
TRP
36
-134.26
-52.90
0.2426
0.2046
0.2065
1.9971
26.350
935
19002
18678
5.01
97.95
0.24
1
1.34
SAD
30.12
0.80
1.10
ML
FLAT BULK SOLVENT MODEL
1.9971
26.350
54
2130
0
0
2076
0.011
2130
1.431
2881
14.906
812
0.106
329
0.007
373
0.3846
0.3322
2.1023
130
2481
98.00
0.3076
0.2746
2.2340
133
2524
99.00
0.2586
0.2385
2.4063
135
2551
99.00
0.2996
0.2241
2.6483
133
2531
100.00
0.2426
0.2112
3.0310
136
2572
100.00
0.2431
0.1928
3.8169
137
2609
100.00
0.2051
0.1804
26.3524
131
2475
90.00
1.997
30.0
4G6D
19002
18679
2.0
2.0
1
98.3
.879
1.997
2.12
2.75
1
5.2
98.3
data collection
ADSC
Quantum
phasing
SHARP
refinement
PHENIX
(phenix.refine: 1.8_1069)
data reduction
HKL-2000
data scaling
HKL-2000
G1 ORF67 / Staphyloccus aureus sigmaA domain 4 complex
1
N
N
2
N
N
3
N
N
3
N
N
A
MET
538
A
MET
1
HELX_P
A
THR
548
A
THR
11
1
1
11
A
THR
550
A
THR
13
HELX_P
A
GLY
562
A
GLY
25
1
2
13
A
THR
570
A
THR
33
HELX_P
A
GLY
579
A
GLY
42
1
3
10
A
THR
581
A
THR
44
HELX_P
A
HIS
598
A
HIS
61
1
4
18
B
ASN
32
B
ASN
32
HELX_P
B
TRP
36
B
TRP
36
5
5
5
B
ASN
73
B
ASN
73
HELX_P
B
ARG
78
B
ARG
78
1
6
6
B
ASP
79
B
ASP
79
HELX_P
B
ARG
83
B
ARG
83
5
7
5
B
ASN
91
B
ASN
91
HELX_P
B
TYR
108
B
TYR
108
1
8
18
B
ASP
118
B
ASP
118
HELX_P
B
GLY
147
B
GLY
147
1
9
30
B
GLU
152
B
GLU
152
HELX_P
B
ASN
157
B
ASN
157
1
10
6
B
SER
160
B
SER
160
HELX_P
B
GLU
171
B
GLU
171
1
11
12
B
ASP
173
B
ASP
173
HELX_P
B
LYS
198
B
LYS
198
1
12
26
DNA BINDING PROTEIN
Staphylococcus aureus RNA polymerase, DNA BINDING PROTEIN
B
GLY
147
B
GLY
147
1
B
LYS
148
B
LYS
148
12.95
RPOD_STAA8
UNP
1
296
P0A0J0
LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD
Q4Z9Y5_9CAUD
UNP
2
1
Q4Z9Y5
MKLKILDKDNATLNVFHRNKEHKTIDNVPTANLVDWYPLSNAYEYKLSRNGEYLELKRLRSTLPSSYGLDDNNQDIIRDN
NHRCKIGYWYNPAVRKDNLKIIEKAKQYGLPIITEEYDANTVEQGFRDIGVIFQSLKTIVVTRYLEGKTEEELRIFNMKS
EESQLNEALKESDFSVDLTYSDLGQIYNMLLLMKKISK
296
368
4G6D
538
610
P0A0J0
A
1
1
73
1
198
4G6D
1
198
Q4Z9Y5
B
2
1
198
1
LEU
conflict
MET
538
4G6D
A
P0A0J0
UNP
296
1
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
B
LYS
2
B
LYS
2
B
ILE
5
B
ILE
5
B
ASN
10
B
ASN
10
B
ARG
18
B
ARG
18
B
GLU
21
B
GLU
21
B
PRO
29
B
PRO
29
B
TYR
43
B
TYR
43
B
LEU
47
B
LEU
47
B
TYR
53
B
TYR
53
B
ARG
58
B
ARG
58
B
CYS
84
B
CYS
84
B
LYS
85
B
LYS
85
19
P 21 21 21