0.014424 0.000000 0.000000 0.000000 0.013630 0.000000 0.000000 0.000000 0.012606 0.00000 0.00000 0.00000 Erat, M.C. Vakonakis, I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 69.330 73.370 79.330 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H18 O5 194.226 TETRAETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 110 11373 11378 10.1073/pnas.1302721110 23798409 Caenorhabditis elegans centriolar protein SAS-6 forms a spiral that is consistent with imparting a ninefold symmetry. 2013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 1 Crystal type: Si(111), toroidal mirrors PIXEL 2011-08-05 Pilatus 2M CCD ADSC QUANTUM 315r single bounce SINGLE WAVELENGTH M x-ray 1 0.9163 1.0 I04-1 Diamond 0.9163 SYNCHROTRON DIAMOND BEAMLINE I04-1 ID14-4 ESRF SYNCHROTRON ESRF BEAMLINE ID14-4 16370.821 Spindle assembly abnormal protein 6 1 man polymer 92.094 GLYCEROL 4 syn non-polymer 194.226 TETRAETHYLENE GLYCOL 2 syn non-polymer 18.015 water 84 nat water no no GSMTSKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILA RDHDLTVDFDAFPKVIIQHLLCKNTEINIILDAEKNFCSFELFSKTPISKGKIFSIKLHAVR GSMTSKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILA RDHDLTVDFDAFPKVIIQHLLCKNTEINIILDAEKNFCSFELFSKTPISKGKIFSIKLHAVR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n nematode sample 3 104 sas-6, Y45F10D.9 6239 Caenorhabditis elegans 469008 Escherichia coli BL21(DE3) plasmid modified pET15b nematode sample 105 142 sas-6, Y45F10D.9 6239 Caenorhabditis elegans 469008 Escherichia coli BL21(DE3) plasmid modified pET15b 1 3.08 60.08 VAPOR DIFFUSION, SITTING DROP 7.5 0.1 M Sodium HEPES pH 7.5, 2.0 M Ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 entity_src_gen software repository Initial release Database references Database references Refinement description Source and taxonomy 1 0 2013-06-19 1 1 2013-07-17 1 2 2013-07-24 1 3 2017-08-16 Structure of the N-terminal domain of C. elegans SAS-6 Structure of the N-terminal domain of D. rerio SAS-6 Structure of N-terminal domain and beginning of coiled coil of D. rerio SAS-6 Structure of N-terminal domain of C. reinhardtii SAS-6 homolog Bld12p Structure of N-terminal coiled coil dimer of C. reinhardtii SAS-6 homolog Bld12p RCSB Y RCSB 2012-07-20 REL REL GOL GLYCEROL PG4 TETRAETHYLENE GLYCOL HOH water GOL 1 2 GOL GOL 201 A GOL 1 2 GOL GOL 202 A GOL 1 2 GOL GOL 203 A GOL 1 2 GOL GOL 204 A PG4 1 3 PG4 PG4 205 A PG4 1 3 PG4 PG4 206 A HOH 1 4 HOH HOH 301 A HOH 8 4 HOH HOH 302 A HOH 9 4 HOH HOH 303 A HOH 10 4 HOH HOH 304 A HOH 11 4 HOH HOH 305 A HOH 12 4 HOH HOH 306 A HOH 1 4 HOH HOH 307 A HOH 2 4 HOH HOH 308 A HOH 3 4 HOH HOH 309 A HOH 4 4 HOH HOH 310 A HOH 5 4 HOH HOH 311 A HOH 6 4 HOH HOH 312 A HOH 7 4 HOH HOH 313 A HOH 1 4 HOH HOH 314 A HOH 4 4 HOH HOH 315 A HOH 3 4 HOH HOH 316 A HOH 4 4 HOH HOH 317 A HOH 5 4 HOH HOH 318 A HOH 6 4 HOH HOH 319 A HOH 7 4 HOH HOH 320 A HOH 8 4 HOH HOH 321 A HOH 9 4 HOH HOH 322 A HOH 10 4 HOH HOH 323 A HOH 11 4 HOH HOH 324 A HOH 12 4 HOH HOH 325 A HOH 13 4 HOH HOH 326 A HOH 14 4 HOH HOH 327 A HOH 15 4 HOH HOH 328 A HOH 16 4 HOH HOH 329 A HOH 17 4 HOH HOH 330 A HOH 18 4 HOH HOH 331 A HOH 19 4 HOH HOH 332 A HOH 20 4 HOH HOH 333 A HOH 21 4 HOH HOH 334 A HOH 22 4 HOH HOH 335 A HOH 23 4 HOH HOH 336 A HOH 24 4 HOH HOH 337 A HOH 25 4 HOH HOH 338 A HOH 26 4 HOH HOH 339 A HOH 27 4 HOH HOH 340 A HOH 28 4 HOH HOH 341 A HOH 29 4 HOH HOH 342 A HOH 30 4 HOH HOH 343 A HOH 31 4 HOH HOH 344 A HOH 32 4 HOH HOH 345 A HOH 33 4 HOH HOH 346 A HOH 34 4 HOH HOH 347 A HOH 35 4 HOH HOH 348 A HOH 36 4 HOH HOH 349 A HOH 37 4 HOH HOH 350 A HOH 38 4 HOH HOH 351 A HOH 39 4 HOH HOH 352 A HOH 40 4 HOH HOH 353 A HOH 41 4 HOH HOH 354 A HOH 42 4 HOH HOH 355 A HOH 43 4 HOH HOH 356 A HOH 44 4 HOH HOH 357 A HOH 45 4 HOH HOH 358 A HOH 46 4 HOH HOH 359 A HOH 47 4 HOH HOH 360 A HOH 48 4 HOH HOH 361 A HOH 49 4 HOH HOH 362 A HOH 50 4 HOH HOH 363 A HOH 51 4 HOH HOH 364 A HOH 52 4 HOH HOH 365 A HOH 54 4 HOH HOH 366 A HOH 55 4 HOH HOH 367 A HOH 56 4 HOH HOH 368 A HOH 57 4 HOH HOH 369 A HOH 59 4 HOH HOH 370 A HOH 60 4 HOH HOH 371 A HOH 61 4 HOH HOH 372 A HOH 62 4 HOH HOH 373 A HOH 63 4 HOH HOH 374 A HOH 64 4 HOH HOH 375 A HOH 65 4 HOH HOH 376 A HOH 66 4 HOH HOH 377 A HOH 67 4 HOH HOH 378 A HOH 68 4 HOH HOH 379 A HOH 69 4 HOH HOH 380 A HOH 70 4 HOH HOH 381 A HOH 71 4 HOH HOH 382 A HOH 72 4 HOH HOH 383 A HOH 73 4 HOH HOH 384 A n 1 -1 A n 2 0 A n 3 1 A THR 2 n 4 THR 2 A SER 3 n 5 SER 3 A LYS 4 n 6 LYS 4 A ILE 5 n 7 ILE 5 A ALA 6 n 8 ALA 6 A LEU 7 n 9 LEU 7 A PHE 8 n 10 PHE 8 A ASP 9 n 11 ASP 9 A GLN 10 n 12 GLN 10 A THR 11 n 13 THR 11 A LEU 12 n 14 LEU 12 A ILE 13 n 15 ILE 13 A ALA 14 n 16 ALA 14 A SER 15 n 17 SER 15 A LEU 16 n 18 LEU 16 A LEU 17 n 19 LEU 17 A GLN 18 n 20 GLN 18 A PRO 19 n 21 PRO 19 A LEU 20 n 22 LEU 20 A n 23 21 A n 24 22 A n 25 23 A n 26 24 A PRO 25 n 27 PRO 25 A ASP 26 n 28 ASP 26 A PHE 27 n 29 PHE 27 A LYS 28 n 30 LYS 28 A ALA 29 n 31 ALA 29 A TYR 30 n 32 TYR 30 A LYS 31 n 33 LYS 31 A THR 32 n 34 THR 32 A LYS 33 n 35 LYS 33 A VAL 34 n 36 VAL 34 A LYS 35 n 37 LYS 35 A LEU 36 n 38 LEU 36 A LYS 37 n 39 LYS 37 A ILE 38 n 40 ILE 38 A SER 39 n 41 SER 39 A GLU 40 n 42 GLU 40 A GLN 41 n 43 GLN 41 A ARG 42 n 44 ARG 42 A ASN 43 n 45 ASN 43 A GLU 44 n 46 GLU 44 A THR 45 n 47 THR 45 A SER 46 n 48 SER 46 A GLY 47 n 49 GLY 47 A GLU 48 n 50 GLU 48 A LYS 49 n 51 LYS 49 A GLU 50 n 52 GLU 50 A LEU 51 n 53 LEU 51 A LYS 52 n 54 LYS 52 A PHE 53 n 55 PHE 53 A GLU 54 n 56 GLU 54 A ILE 55 n 57 ILE 55 A SER 56 n 58 SER 56 A ARG 57 n 59 ARG 57 A SER 58 n 60 SER 58 A ASP 59 n 61 ASP 59 A ASP 60 n 62 ASP 60 A PHE 61 n 63 PHE 61 A GLU 62 n 64 GLU 62 A PHE 63 n 65 PHE 63 A LEU 64 n 66 LEU 64 A PHE 65 n 67 PHE 65 A SER 66 n 68 SER 66 A GLU 67 n 69 GLU 67 A THR 68 n 70 THR 68 A LEU 69 n 71 LEU 69 A ASN 70 n 72 ASN 70 A ASN 71 n 73 ASN 71 A GLU 72 n 74 GLU 72 A LYS 73 n 75 LYS 73 A TYR 74 n 76 TYR 74 A GLN 75 n 77 GLN 75 A ILE 76 n 78 ILE 76 A LEU 77 n 79 LEU 77 A ALA 78 n 80 ALA 78 A ARG 79 n 81 ARG 79 A ASP 80 n 82 ASP 80 A HIS 81 n 83 HIS 81 A ASP 82 n 84 ASP 82 A LEU 83 n 85 LEU 83 A THR 84 n 86 THR 84 A VAL 85 n 87 VAL 85 A ASP 86 n 88 ASP 86 A PHE 87 n 89 PHE 87 A ASP 88 n 90 ASP 88 A ALA 89 n 91 ALA 89 A PHE 90 n 92 PHE 90 A PRO 91 n 93 PRO 91 A LYS 92 n 94 LYS 92 A VAL 93 n 95 VAL 93 A ILE 94 n 96 ILE 94 A ILE 95 n 97 ILE 95 A GLN 96 n 98 GLN 96 A HIS 97 n 99 HIS 97 A LEU 98 n 100 LEU 98 A LEU 99 n 101 LEU 99 A CYS 100 n 102 CYS 100 A LYS 101 n 103 LYS 101 A ASN 102 n 104 ASN 102 A THR 103 n 105 THR 103 A GLU 104 n 106 GLU 104 A ILE 105 n 107 ILE 105 A ASN 106 n 108 ASN 106 A ILE 107 n 109 ILE 107 A ILE 108 n 110 ILE 108 A LEU 109 n 111 LEU 109 A ASP 110 n 112 ASP 110 A ALA 111 n 113 ALA 111 A GLU 112 n 114 GLU 112 A LYS 113 n 115 LYS 113 A ASN 114 n 116 ASN 114 A PHE 115 n 117 PHE 115 A CYS 116 n 118 CYS 116 A SER 117 n 119 SER 117 A PHE 118 n 120 PHE 118 A GLU 119 n 121 GLU 119 A LEU 120 n 122 LEU 120 A PHE 121 n 123 PHE 121 A SER 122 n 124 SER 122 A LYS 123 n 125 LYS 123 A THR 124 n 126 THR 124 A PRO 125 n 127 PRO 125 A ILE 126 n 128 ILE 126 A SER 127 n 129 SER 127 A LYS 128 n 130 LYS 128 A GLY 129 n 131 GLY 129 A LYS 130 n 132 LYS 130 A ILE 131 n 133 ILE 131 A PHE 132 n 134 PHE 132 A SER 133 n 135 SER 133 A ILE 134 n 136 ILE 134 A LYS 135 n 137 LYS 135 A LEU 136 n 138 LEU 136 A HIS 137 n 139 HIS 137 A ALA 138 n 140 ALA 138 A VAL 139 n 141 VAL 139 A n 142 140 A 0.5608 -0.2783 0.7101 3.9262 0.1382 3.9031 0.0168 0.0717 -0.0337 0.4032 -0.0231 -0.3898 0.0039 0.1320 0.0062 -0.3199 0.0055 -0.0926 -0.4718 0.0062 -0.4026 refined -16.8468 -2.7927 -23.3915 X-RAY DIFFRACTION A 2 A 20 X-RAY DIFFRACTION 1 { A|2 - A|20 A|25 - A|139 } A 25 A 139 X-RAY DIFFRACTION 1 { A|2 - A|20 A|25 - A|139 } author_and_software_defined_assembly PISA 2 dimeric 3390 1 16630 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_554 x,-y,-z-1 crystal symmetry operation 0.0000000000 0.0000000000 -79.3300000000 A N LEU 16 A N LEU 18 A O TYR 30 A O TYR 32 A N LYS 35 A N LYS 37 A O SER 56 A O SER 58 A N LEU 51 A N LEU 53 A O LEU 69 A O LEU 71 A N SER 66 A N SER 68 A O HIS 137 A O HIS 139 A O ILE 131 A O ILE 133 A N LEU 120 A N LEU 122 A O GLU 119 A O GLU 121 A N ASN 106 A N ASN 108 A O ILE 105 A O ILE 107 A N SER 15 A N SER 17 1 A O1 PG4 206 G O1 PG4 1 1 N 1 A GLY -1 A GLY 1 1 Y 1 A SER 0 A SER 2 1 Y 1 A MET 1 A MET 3 1 Y 1 A SER 21 A SER 23 1 Y 1 A LEU 22 A LEU 24 1 Y 1 A ASN 23 A ASN 25 1 Y 1 A GLN 24 A GLN 26 1 Y 1 A ARG 140 A ARG 142 1 Y 48.03 -9.5598 0.0000 0.0000 9.0514 0.0000 0.5085 0.9467 0.9468 0.2096 0.1971 0.1977 0.1977 1.80 26.93 970 18781 18781 5.16 98.28 0.110 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT Engh & Huber 0.286 1.80 26.93 84 1225 49 0 1092 0.010 1226 HARMONIC 2.00 1.12 1641 HARMONIC 2.00 616 SINUSOIDAL 2.00 35 HARMONIC 2.00 170 HARMONIC 5.00 1226 HARMONIC 20.00 3.92 2.96 166 SEMIHARMONIC 5.00 1423 SEMIHARMONIC 4.00 0.2604 0.2192 0.2212 1.91 151 2840 2991 9 5.05 98.28 32.05 1.8 29.15 4G79 18784 18784 0 0 1 98.5 1.80 1.90 1 98.9 data collection GNDclient phasing PHASER refinement BUSTER 2.10.0 data reduction MOSFLM data scaling SCALA Spindle assembly abnormal protein 6 Structure a C. elegans SAS-6 variant 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 4 N N A ASN 70 A ASN 72 HELX_P A ASP 82 A ASP 84 1 1 13 A ALA 89 A ALA 91 HELX_P A LYS 101 A LYS 103 1 2 13 disulf 2.590 A CYS 100 A SG CYS 102 1_555 A CYS 100 A SG CYS 102 2_455 STRUCTURAL PROTEIN structural protein, beta-sandwich, alpha-beta protein, cytoplasmic, centriolar, centriole, central tube SAS6_CAEEL UNP 1 1 O62479 MTSKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILARD HDLTVDFDAFPKVIIQHLLCKN SAS6_CAEEL UNP 1 131 O62479 TEINIILDAEKNFCSFELFSKTPISKGKIFSIKLHAVR 1 102 4G79 1 102 O62479 A 1 3 104 131 168 4G79 103 140 O62479 A 2 105 142 1 EXPRESSION TAG GLY -1 4G79 A O62479 UNP 1 1 EXPRESSION TAG SER 0 4G79 A O62479 UNP 2 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A ILE 5 A ILE 7 A PRO 19 A PRO 21 A PHE 27 A PHE 29 A ARG 42 A ARG 44 A LYS 49 A LYS 51 A SER 56 A SER 58 A LEU 64 A LEU 66 A LEU 69 A LEU 71 A LYS 130 A LYS 132 A ALA 138 A ALA 140 A PHE 115 A PHE 117 A PHE 121 A PHE 123 A GLU 104 A GLU 106 A LEU 109 A LEU 111 A ILE 5 A ILE 7 A PRO 19 A PRO 21 BINDING SITE FOR RESIDUE GOL A 201 Software 2 BINDING SITE FOR RESIDUE GOL A 202 Software 5 BINDING SITE FOR RESIDUE GOL A 203 Software 4 BINDING SITE FOR RESIDUE GOL A 204 Software 5 BINDING SITE FOR RESIDUE PG4 A 205 Software 9 BINDING SITE FOR RESIDUE PG4 A 206 Software 5 A ALA 6 A ALA 8 2 1_555 A LEU 7 A LEU 9 2 1_555 A GLN 96 A GLN 98 5 2_455 A LEU 99 A LEU 101 5 1_555 A CYS 100 A CYS 102 5 1_555 A LYS 101 A LYS 103 5 1_555 A ASN 102 A ASN 104 5 1_555 A GLU 112 A GLU 114 4 1_555 A ASN 114 A ASN 116 4 1_555 A ALA 138 A ALA 140 4 1_555 A HOH 315 H HOH 4 1_555 A SER 15 A SER 17 5 1_555 A GLU 104 A GLU 106 5 1_555 A ASN 106 A ASN 108 5 1_555 A HOH 317 H HOH 5 1_555 A HOH 331 H HOH 5 1_555 A THR 32 A THR 34 9 1_555 A LYS 33 A LYS 35 9 1_555 A LYS 35 A LYS 37 9 1_555 A SER 56 A SER 58 9 1_555 A ARG 57 A ARG 59 9 1_555 A SER 58 A SER 60 9 1_555 A ASP 59 A ASP 61 9 1_555 A PHE 61 A PHE 63 9 1_555 A HOH 328 H HOH 9 7_444 A ILE 13 A ILE 15 5 1_555 A LYS 31 A LYS 33 5 1_555 A ARG 42 A ARG 44 5 7_444 A THR 45 A THR 47 5 7_444 A THR 103 A THR 105 5 1_555 23 I 2 2 2