0.014424
0.000000
0.000000
0.000000
0.013630
0.000000
0.000000
0.000000
0.012606
0.00000
0.00000
0.00000
Erat, M.C.
Vakonakis, I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
69.330
73.370
79.330
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H18 O5
194.226
TETRAETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
110
11373
11378
10.1073/pnas.1302721110
23798409
Caenorhabditis elegans centriolar protein SAS-6 forms a spiral that is consistent with imparting a ninefold symmetry.
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
1
Crystal type: Si(111), toroidal mirrors
PIXEL
2011-08-05
Pilatus 2M
CCD
ADSC QUANTUM 315r
single bounce
SINGLE WAVELENGTH
M
x-ray
1
0.9163
1.0
I04-1
Diamond
0.9163
SYNCHROTRON
DIAMOND BEAMLINE I04-1
ID14-4
ESRF
SYNCHROTRON
ESRF BEAMLINE ID14-4
16370.821
Spindle assembly abnormal protein 6
1
man
polymer
92.094
GLYCEROL
4
syn
non-polymer
194.226
TETRAETHYLENE GLYCOL
2
syn
non-polymer
18.015
water
84
nat
water
no
no
GSMTSKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILA
RDHDLTVDFDAFPKVIIQHLLCKNTEINIILDAEKNFCSFELFSKTPISKGKIFSIKLHAVR
GSMTSKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILA
RDHDLTVDFDAFPKVIIQHLLCKNTEINIILDAEKNFCSFELFSKTPISKGKIFSIKLHAVR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
nematode
sample
3
104
sas-6, Y45F10D.9
6239
Caenorhabditis elegans
469008
Escherichia coli
BL21(DE3)
plasmid
modified pET15b
nematode
sample
105
142
sas-6, Y45F10D.9
6239
Caenorhabditis elegans
469008
Escherichia coli
BL21(DE3)
plasmid
modified pET15b
1
3.08
60.08
VAPOR DIFFUSION, SITTING DROP
7.5
0.1 M Sodium HEPES pH 7.5, 2.0 M Ammonium sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
entity_src_gen
software
repository
Initial release
Database references
Database references
Refinement description
Source and taxonomy
1
0
2013-06-19
1
1
2013-07-17
1
2
2013-07-24
1
3
2017-08-16
Structure of the N-terminal domain of C. elegans SAS-6
Structure of the N-terminal domain of D. rerio SAS-6
Structure of N-terminal domain and beginning of coiled coil of D. rerio SAS-6
Structure of N-terminal domain of C. reinhardtii SAS-6 homolog Bld12p
Structure of N-terminal coiled coil dimer of C. reinhardtii SAS-6 homolog Bld12p
RCSB
Y
RCSB
2012-07-20
REL
REL
GOL
GLYCEROL
PG4
TETRAETHYLENE GLYCOL
HOH
water
GOL
1
2
GOL
GOL
201
A
GOL
1
2
GOL
GOL
202
A
GOL
1
2
GOL
GOL
203
A
GOL
1
2
GOL
GOL
204
A
PG4
1
3
PG4
PG4
205
A
PG4
1
3
PG4
PG4
206
A
HOH
1
4
HOH
HOH
301
A
HOH
8
4
HOH
HOH
302
A
HOH
9
4
HOH
HOH
303
A
HOH
10
4
HOH
HOH
304
A
HOH
11
4
HOH
HOH
305
A
HOH
12
4
HOH
HOH
306
A
HOH
1
4
HOH
HOH
307
A
HOH
2
4
HOH
HOH
308
A
HOH
3
4
HOH
HOH
309
A
HOH
4
4
HOH
HOH
310
A
HOH
5
4
HOH
HOH
311
A
HOH
6
4
HOH
HOH
312
A
HOH
7
4
HOH
HOH
313
A
HOH
1
4
HOH
HOH
314
A
HOH
4
4
HOH
HOH
315
A
HOH
3
4
HOH
HOH
316
A
HOH
4
4
HOH
HOH
317
A
HOH
5
4
HOH
HOH
318
A
HOH
6
4
HOH
HOH
319
A
HOH
7
4
HOH
HOH
320
A
HOH
8
4
HOH
HOH
321
A
HOH
9
4
HOH
HOH
322
A
HOH
10
4
HOH
HOH
323
A
HOH
11
4
HOH
HOH
324
A
HOH
12
4
HOH
HOH
325
A
HOH
13
4
HOH
HOH
326
A
HOH
14
4
HOH
HOH
327
A
HOH
15
4
HOH
HOH
328
A
HOH
16
4
HOH
HOH
329
A
HOH
17
4
HOH
HOH
330
A
HOH
18
4
HOH
HOH
331
A
HOH
19
4
HOH
HOH
332
A
HOH
20
4
HOH
HOH
333
A
HOH
21
4
HOH
HOH
334
A
HOH
22
4
HOH
HOH
335
A
HOH
23
4
HOH
HOH
336
A
HOH
24
4
HOH
HOH
337
A
HOH
25
4
HOH
HOH
338
A
HOH
26
4
HOH
HOH
339
A
HOH
27
4
HOH
HOH
340
A
HOH
28
4
HOH
HOH
341
A
HOH
29
4
HOH
HOH
342
A
HOH
30
4
HOH
HOH
343
A
HOH
31
4
HOH
HOH
344
A
HOH
32
4
HOH
HOH
345
A
HOH
33
4
HOH
HOH
346
A
HOH
34
4
HOH
HOH
347
A
HOH
35
4
HOH
HOH
348
A
HOH
36
4
HOH
HOH
349
A
HOH
37
4
HOH
HOH
350
A
HOH
38
4
HOH
HOH
351
A
HOH
39
4
HOH
HOH
352
A
HOH
40
4
HOH
HOH
353
A
HOH
41
4
HOH
HOH
354
A
HOH
42
4
HOH
HOH
355
A
HOH
43
4
HOH
HOH
356
A
HOH
44
4
HOH
HOH
357
A
HOH
45
4
HOH
HOH
358
A
HOH
46
4
HOH
HOH
359
A
HOH
47
4
HOH
HOH
360
A
HOH
48
4
HOH
HOH
361
A
HOH
49
4
HOH
HOH
362
A
HOH
50
4
HOH
HOH
363
A
HOH
51
4
HOH
HOH
364
A
HOH
52
4
HOH
HOH
365
A
HOH
54
4
HOH
HOH
366
A
HOH
55
4
HOH
HOH
367
A
HOH
56
4
HOH
HOH
368
A
HOH
57
4
HOH
HOH
369
A
HOH
59
4
HOH
HOH
370
A
HOH
60
4
HOH
HOH
371
A
HOH
61
4
HOH
HOH
372
A
HOH
62
4
HOH
HOH
373
A
HOH
63
4
HOH
HOH
374
A
HOH
64
4
HOH
HOH
375
A
HOH
65
4
HOH
HOH
376
A
HOH
66
4
HOH
HOH
377
A
HOH
67
4
HOH
HOH
378
A
HOH
68
4
HOH
HOH
379
A
HOH
69
4
HOH
HOH
380
A
HOH
70
4
HOH
HOH
381
A
HOH
71
4
HOH
HOH
382
A
HOH
72
4
HOH
HOH
383
A
HOH
73
4
HOH
HOH
384
A
n
1
-1
A
n
2
0
A
n
3
1
A
THR
2
n
4
THR
2
A
SER
3
n
5
SER
3
A
LYS
4
n
6
LYS
4
A
ILE
5
n
7
ILE
5
A
ALA
6
n
8
ALA
6
A
LEU
7
n
9
LEU
7
A
PHE
8
n
10
PHE
8
A
ASP
9
n
11
ASP
9
A
GLN
10
n
12
GLN
10
A
THR
11
n
13
THR
11
A
LEU
12
n
14
LEU
12
A
ILE
13
n
15
ILE
13
A
ALA
14
n
16
ALA
14
A
SER
15
n
17
SER
15
A
LEU
16
n
18
LEU
16
A
LEU
17
n
19
LEU
17
A
GLN
18
n
20
GLN
18
A
PRO
19
n
21
PRO
19
A
LEU
20
n
22
LEU
20
A
n
23
21
A
n
24
22
A
n
25
23
A
n
26
24
A
PRO
25
n
27
PRO
25
A
ASP
26
n
28
ASP
26
A
PHE
27
n
29
PHE
27
A
LYS
28
n
30
LYS
28
A
ALA
29
n
31
ALA
29
A
TYR
30
n
32
TYR
30
A
LYS
31
n
33
LYS
31
A
THR
32
n
34
THR
32
A
LYS
33
n
35
LYS
33
A
VAL
34
n
36
VAL
34
A
LYS
35
n
37
LYS
35
A
LEU
36
n
38
LEU
36
A
LYS
37
n
39
LYS
37
A
ILE
38
n
40
ILE
38
A
SER
39
n
41
SER
39
A
GLU
40
n
42
GLU
40
A
GLN
41
n
43
GLN
41
A
ARG
42
n
44
ARG
42
A
ASN
43
n
45
ASN
43
A
GLU
44
n
46
GLU
44
A
THR
45
n
47
THR
45
A
SER
46
n
48
SER
46
A
GLY
47
n
49
GLY
47
A
GLU
48
n
50
GLU
48
A
LYS
49
n
51
LYS
49
A
GLU
50
n
52
GLU
50
A
LEU
51
n
53
LEU
51
A
LYS
52
n
54
LYS
52
A
PHE
53
n
55
PHE
53
A
GLU
54
n
56
GLU
54
A
ILE
55
n
57
ILE
55
A
SER
56
n
58
SER
56
A
ARG
57
n
59
ARG
57
A
SER
58
n
60
SER
58
A
ASP
59
n
61
ASP
59
A
ASP
60
n
62
ASP
60
A
PHE
61
n
63
PHE
61
A
GLU
62
n
64
GLU
62
A
PHE
63
n
65
PHE
63
A
LEU
64
n
66
LEU
64
A
PHE
65
n
67
PHE
65
A
SER
66
n
68
SER
66
A
GLU
67
n
69
GLU
67
A
THR
68
n
70
THR
68
A
LEU
69
n
71
LEU
69
A
ASN
70
n
72
ASN
70
A
ASN
71
n
73
ASN
71
A
GLU
72
n
74
GLU
72
A
LYS
73
n
75
LYS
73
A
TYR
74
n
76
TYR
74
A
GLN
75
n
77
GLN
75
A
ILE
76
n
78
ILE
76
A
LEU
77
n
79
LEU
77
A
ALA
78
n
80
ALA
78
A
ARG
79
n
81
ARG
79
A
ASP
80
n
82
ASP
80
A
HIS
81
n
83
HIS
81
A
ASP
82
n
84
ASP
82
A
LEU
83
n
85
LEU
83
A
THR
84
n
86
THR
84
A
VAL
85
n
87
VAL
85
A
ASP
86
n
88
ASP
86
A
PHE
87
n
89
PHE
87
A
ASP
88
n
90
ASP
88
A
ALA
89
n
91
ALA
89
A
PHE
90
n
92
PHE
90
A
PRO
91
n
93
PRO
91
A
LYS
92
n
94
LYS
92
A
VAL
93
n
95
VAL
93
A
ILE
94
n
96
ILE
94
A
ILE
95
n
97
ILE
95
A
GLN
96
n
98
GLN
96
A
HIS
97
n
99
HIS
97
A
LEU
98
n
100
LEU
98
A
LEU
99
n
101
LEU
99
A
CYS
100
n
102
CYS
100
A
LYS
101
n
103
LYS
101
A
ASN
102
n
104
ASN
102
A
THR
103
n
105
THR
103
A
GLU
104
n
106
GLU
104
A
ILE
105
n
107
ILE
105
A
ASN
106
n
108
ASN
106
A
ILE
107
n
109
ILE
107
A
ILE
108
n
110
ILE
108
A
LEU
109
n
111
LEU
109
A
ASP
110
n
112
ASP
110
A
ALA
111
n
113
ALA
111
A
GLU
112
n
114
GLU
112
A
LYS
113
n
115
LYS
113
A
ASN
114
n
116
ASN
114
A
PHE
115
n
117
PHE
115
A
CYS
116
n
118
CYS
116
A
SER
117
n
119
SER
117
A
PHE
118
n
120
PHE
118
A
GLU
119
n
121
GLU
119
A
LEU
120
n
122
LEU
120
A
PHE
121
n
123
PHE
121
A
SER
122
n
124
SER
122
A
LYS
123
n
125
LYS
123
A
THR
124
n
126
THR
124
A
PRO
125
n
127
PRO
125
A
ILE
126
n
128
ILE
126
A
SER
127
n
129
SER
127
A
LYS
128
n
130
LYS
128
A
GLY
129
n
131
GLY
129
A
LYS
130
n
132
LYS
130
A
ILE
131
n
133
ILE
131
A
PHE
132
n
134
PHE
132
A
SER
133
n
135
SER
133
A
ILE
134
n
136
ILE
134
A
LYS
135
n
137
LYS
135
A
LEU
136
n
138
LEU
136
A
HIS
137
n
139
HIS
137
A
ALA
138
n
140
ALA
138
A
VAL
139
n
141
VAL
139
A
n
142
140
A
0.5608
-0.2783
0.7101
3.9262
0.1382
3.9031
0.0168
0.0717
-0.0337
0.4032
-0.0231
-0.3898
0.0039
0.1320
0.0062
-0.3199
0.0055
-0.0926
-0.4718
0.0062
-0.4026
refined
-16.8468
-2.7927
-23.3915
X-RAY DIFFRACTION
A
2
A
20
X-RAY DIFFRACTION
1
{ A|2 - A|20 A|25 - A|139 }
A
25
A
139
X-RAY DIFFRACTION
1
{ A|2 - A|20 A|25 - A|139 }
author_and_software_defined_assembly
PISA
2
dimeric
3390
1
16630
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_554
x,-y,-z-1
crystal symmetry operation
0.0000000000
0.0000000000
-79.3300000000
A
N
LEU
16
A
N
LEU
18
A
O
TYR
30
A
O
TYR
32
A
N
LYS
35
A
N
LYS
37
A
O
SER
56
A
O
SER
58
A
N
LEU
51
A
N
LEU
53
A
O
LEU
69
A
O
LEU
71
A
N
SER
66
A
N
SER
68
A
O
HIS
137
A
O
HIS
139
A
O
ILE
131
A
O
ILE
133
A
N
LEU
120
A
N
LEU
122
A
O
GLU
119
A
O
GLU
121
A
N
ASN
106
A
N
ASN
108
A
O
ILE
105
A
O
ILE
107
A
N
SER
15
A
N
SER
17
1
A
O1
PG4
206
G
O1
PG4
1
1
N
1
A
GLY
-1
A
GLY
1
1
Y
1
A
SER
0
A
SER
2
1
Y
1
A
MET
1
A
MET
3
1
Y
1
A
SER
21
A
SER
23
1
Y
1
A
LEU
22
A
LEU
24
1
Y
1
A
ASN
23
A
ASN
25
1
Y
1
A
GLN
24
A
GLN
26
1
Y
1
A
ARG
140
A
ARG
142
1
Y
48.03
-9.5598
0.0000
0.0000
9.0514
0.0000
0.5085
0.9467
0.9468
0.2096
0.1971
0.1977
0.1977
1.80
26.93
970
18781
18781
5.16
98.28
0.110
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
Engh & Huber
0.286
1.80
26.93
84
1225
49
0
1092
0.010
1226
HARMONIC
2.00
1.12
1641
HARMONIC
2.00
616
SINUSOIDAL
2.00
35
HARMONIC
2.00
170
HARMONIC
5.00
1226
HARMONIC
20.00
3.92
2.96
166
SEMIHARMONIC
5.00
1423
SEMIHARMONIC
4.00
0.2604
0.2192
0.2212
1.91
151
2840
2991
9
5.05
98.28
32.05
1.8
29.15
4G79
18784
18784
0
0
1
98.5
1.80
1.90
1
98.9
data collection
GNDclient
phasing
PHASER
refinement
BUSTER
2.10.0
data reduction
MOSFLM
data scaling
SCALA
Spindle assembly abnormal protein 6
Structure a C. elegans SAS-6 variant
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
A
ASN
70
A
ASN
72
HELX_P
A
ASP
82
A
ASP
84
1
1
13
A
ALA
89
A
ALA
91
HELX_P
A
LYS
101
A
LYS
103
1
2
13
disulf
2.590
A
CYS
100
A
SG
CYS
102
1_555
A
CYS
100
A
SG
CYS
102
2_455
STRUCTURAL PROTEIN
structural protein, beta-sandwich, alpha-beta protein, cytoplasmic, centriolar, centriole, central tube
SAS6_CAEEL
UNP
1
1
O62479
MTSKIALFDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQRNETSGEKELKFEISRSDDFEFLFSETLNNEKYQILARD
HDLTVDFDAFPKVIIQHLLCKN
SAS6_CAEEL
UNP
1
131
O62479
TEINIILDAEKNFCSFELFSKTPISKGKIFSIKLHAVR
1
102
4G79
1
102
O62479
A
1
3
104
131
168
4G79
103
140
O62479
A
2
105
142
1
EXPRESSION TAG
GLY
-1
4G79
A
O62479
UNP
1
1
EXPRESSION TAG
SER
0
4G79
A
O62479
UNP
2
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
ILE
5
A
ILE
7
A
PRO
19
A
PRO
21
A
PHE
27
A
PHE
29
A
ARG
42
A
ARG
44
A
LYS
49
A
LYS
51
A
SER
56
A
SER
58
A
LEU
64
A
LEU
66
A
LEU
69
A
LEU
71
A
LYS
130
A
LYS
132
A
ALA
138
A
ALA
140
A
PHE
115
A
PHE
117
A
PHE
121
A
PHE
123
A
GLU
104
A
GLU
106
A
LEU
109
A
LEU
111
A
ILE
5
A
ILE
7
A
PRO
19
A
PRO
21
BINDING SITE FOR RESIDUE GOL A 201
Software
2
BINDING SITE FOR RESIDUE GOL A 202
Software
5
BINDING SITE FOR RESIDUE GOL A 203
Software
4
BINDING SITE FOR RESIDUE GOL A 204
Software
5
BINDING SITE FOR RESIDUE PG4 A 205
Software
9
BINDING SITE FOR RESIDUE PG4 A 206
Software
5
A
ALA
6
A
ALA
8
2
1_555
A
LEU
7
A
LEU
9
2
1_555
A
GLN
96
A
GLN
98
5
2_455
A
LEU
99
A
LEU
101
5
1_555
A
CYS
100
A
CYS
102
5
1_555
A
LYS
101
A
LYS
103
5
1_555
A
ASN
102
A
ASN
104
5
1_555
A
GLU
112
A
GLU
114
4
1_555
A
ASN
114
A
ASN
116
4
1_555
A
ALA
138
A
ALA
140
4
1_555
A
HOH
315
H
HOH
4
1_555
A
SER
15
A
SER
17
5
1_555
A
GLU
104
A
GLU
106
5
1_555
A
ASN
106
A
ASN
108
5
1_555
A
HOH
317
H
HOH
5
1_555
A
HOH
331
H
HOH
5
1_555
A
THR
32
A
THR
34
9
1_555
A
LYS
33
A
LYS
35
9
1_555
A
LYS
35
A
LYS
37
9
1_555
A
SER
56
A
SER
58
9
1_555
A
ARG
57
A
ARG
59
9
1_555
A
SER
58
A
SER
60
9
1_555
A
ASP
59
A
ASP
61
9
1_555
A
PHE
61
A
PHE
63
9
1_555
A
HOH
328
H
HOH
9
7_444
A
ILE
13
A
ILE
15
5
1_555
A
LYS
31
A
LYS
33
5
1_555
A
ARG
42
A
ARG
44
5
7_444
A
THR
45
A
THR
47
5
7_444
A
THR
103
A
THR
105
5
1_555
23
I 2 2 2