0.005817 0.000000 0.002363 0.000000 0.024588 0.000000 0.000000 0.000000 0.014632 0.00000 0.00000 0.00000 Potter, J.A. Owsianka, A. Taylor, G.L. Patel, A.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 112.11 90.00 171.910 40.670 73.770 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Virol. JOVIAM 0825 0022-538X 86 12923 12932 10.1128/JVI.02052-12 22993159 Toward a Hepatitis C Virus Vaccine: the Structural Basis of Hepatitis C Virus Neutralization by AP33, a Broadly Neutralizing Antibody. 2012 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2010-11-02 RIGAKU SATURN 944 graphite SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU MICROMAX-007 HF 23677.420 NEUTRALIZING ANTIBODY AP33 HEAVY CHAIN 1 nat polymer 23921.352 NEUTRALIZING ANTIBODY AP33 LIGHT CHAIN 1 nat polymer 1667.867 Genome polyprotein unp residues 94-107 1 syn polymer 18.015 water 6 nat water no no EVQLQESGPSLVKPSQTLSLTCSVTGDSITSGYWNWIRKFPGNKLEYMGYISYSGSTYYNLSLRSRISITRDTSKNQYYL QLNSVTTEDTATYYCALITTTTYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR EVQLQESGPSLVKPSQTLSLTCSVTGDSITSGYWNWIRKFPGNKLEYMGYISYSGSTYYNLSLRSRISITRDTSKNQYYL QLNSVTTEDTATYYCALITTTTYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN SGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR H polypeptide(L) no no NIVLTQSPVSLAVSLGQRATISCRASESVDGYGNSFLHWFQQKPGQPPKLLIYLASNLNSGVPARFSGSGSRTDFTLTID PVEADDAATYYCQQNNVDPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC NIVLTQSPVSLAVSLGQRATISCRASESVDGYGNSFLHWFQQKPGQPPKLLIYLASNLNSGVPARFSGSGSRTDFTLTID PVEADDAATYYCQQNNVDPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC L polypeptide(L) no no IQLINTNGSWHINR IQLINTNGSWHINR P polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 10090 Mus musculus sample 10090 Mus musculus 1 2.42 49.27 VAPOR DIFFUSION, SITTING DROP 8 18% PEG 8K, 0.1M TrisHCl, 0.2M CaCl2, VAPOR DIFFUSION, SITTING DROP, temperature 295K 295 audit_author pdbx_unobs_or_zero_occ_atoms repository Initial release Database references Advisory Structure summary 1 0 2012-10-10 1 1 2012-11-21 1 2 2018-01-24 _audit_author.name RCSB Y RCSB 2012-07-25 REL REL HOH water 11103 Hepatitis C virus sample HOH 1 4 HOH HOH 301 H HOH 2 4 HOH HOH 302 H HOH 5 4 HOH HOH 303 H HOH 30 4 HOH HOH 304 H HOH 3 4 HOH HOH 301 L HOH 14 4 HOH HOH 302 L GLU 1 n 1 GLU 1 H VAL 2 n 2 VAL 2 H GLN 3 n 3 GLN 3 H LEU 4 n 4 LEU 4 H GLN 5 n 5 GLN 5 H GLU 6 n 6 GLU 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H PRO 9 n 9 PRO 9 H SER 10 n 10 SER 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H LYS 13 n 13 LYS 13 H PRO 14 n 14 PRO 14 H SER 15 n 15 SER 15 H GLN 16 n 16 GLN 16 H THR 17 n 17 THR 17 H LEU 18 n 18 LEU 18 H SER 19 n 19 SER 19 H LEU 20 n 20 LEU 20 H THR 21 n 21 THR 21 H CYS 22 n 22 CYS 22 H SER 23 n 23 SER 23 H VAL 24 n 24 VAL 24 H THR 25 n 25 THR 25 H GLY 26 n 26 GLY 26 H ASP 27 n 27 ASP 27 H n 28 28 H n 29 29 H THR 30 n 30 THR 30 H SER 31 n 31 SER 31 H GLY 32 n 32 GLY 32 H TYR 33 n 33 TYR 33 H TRP 34 n 34 TRP 34 H ASN 35 n 35 ASN 35 H TRP 36 n 36 TRP 36 H ILE 37 n 37 ILE 37 H ARG 38 n 38 ARG 38 H LYS 39 n 39 LYS 39 H PHE 40 n 40 PHE 40 H PRO 41 n 41 PRO 41 H GLY 42 n 42 GLY 42 H ASN 43 n 43 ASN 43 H LYS 44 n 44 LYS 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TYR 47 n 47 TYR 47 H MET 48 n 48 MET 48 H GLY 49 n 49 GLY 49 H TYR 50 n 50 TYR 50 H ILE 51 n 51 ILE 51 H SER 52 n 52 SER 52 H TYR 53 n 53 TYR 53 H SER 54 n 54 SER 54 H GLY 55 n 55 GLY 55 H SER 56 n 56 SER 56 H THR 57 n 57 THR 57 H TYR 58 n 58 TYR 58 H TYR 59 n 59 TYR 59 H ASN 60 n 60 ASN 60 H LEU 61 n 61 LEU 61 H SER 62 n 62 SER 62 H LEU 63 n 63 LEU 63 H ARG 64 n 64 ARG 64 H SER 65 n 65 SER 65 H ARG 66 n 66 ARG 66 H ILE 67 n 67 ILE 67 H SER 68 n 68 SER 68 H ILE 69 n 69 ILE 69 H THR 70 n 70 THR 70 H ARG 71 n 71 ARG 71 H ASP 72 n 72 ASP 72 H THR 73 n 73 THR 73 H SER 74 n 74 SER 74 H LYS 75 n 75 LYS 75 H ASN 76 n 76 ASN 76 H GLN 77 n 77 GLN 77 H TYR 78 n 78 TYR 78 H TYR 79 n 79 TYR 79 H LEU 80 n 80 LEU 80 H GLN 81 n 81 GLN 81 H LEU 82 n 82 LEU 82 H ASN 82 n 83 A ASN 82 H SER 82 n 84 B SER 82 H VAL 82 n 85 C VAL 82 H THR 83 n 86 THR 83 H THR 84 n 87 THR 84 H GLU 85 n 88 GLU 85 H ASP 86 n 89 ASP 86 H THR 87 n 90 THR 87 H ALA 88 n 91 ALA 88 H THR 89 n 92 THR 89 H TYR 90 n 93 TYR 90 H TYR 91 n 94 TYR 91 H CYS 92 n 95 CYS 92 H ALA 93 n 96 ALA 93 H LEU 94 n 97 LEU 94 H ILE 95 n 98 ILE 95 H THR 96 n 99 THR 96 H THR 97 n 100 THR 97 H THR 98 n 101 THR 98 H THR 99 n 102 THR 99 H TYR 100 n 103 TYR 100 H ALA 100 n 104 A ALA 100 H MET 100 n 105 B MET 100 H ASP 101 n 106 ASP 101 H TYR 102 n 107 TYR 102 H TRP 103 n 108 TRP 103 H GLY 104 n 109 GLY 104 H GLN 105 n 110 GLN 105 H GLY 106 n 111 GLY 106 H THR 107 n 112 THR 107 H SER 108 n 113 SER 108 H VAL 109 n 114 VAL 109 H THR 110 n 115 THR 110 H VAL 111 n 116 VAL 111 H SER 112 n 117 SER 112 H SER 113 n 118 SER 113 H ALA 114 n 119 ALA 114 H LYS 115 n 120 LYS 115 H THR 116 n 121 THR 116 H THR 117 n 122 THR 117 H PRO 118 n 123 PRO 118 H PRO 119 n 124 PRO 119 H SER 120 n 125 SER 120 H VAL 121 n 126 VAL 121 H TYR 122 n 127 TYR 122 H PRO 123 n 128 PRO 123 H LEU 124 n 129 LEU 124 H ALA 125 n 130 ALA 125 H PRO 126 n 131 PRO 126 H n 132 127 H n 133 128 H n 134 129 H n 135 130 H n 136 131 H n 137 132 H ASN 133 n 138 ASN 133 H SER 134 n 139 SER 134 H MET 135 n 140 MET 135 H VAL 136 n 141 VAL 136 H THR 137 n 142 THR 137 H LEU 138 n 143 LEU 138 H GLY 139 n 144 GLY 139 H CYS 140 n 145 CYS 140 H LEU 141 n 146 LEU 141 H VAL 142 n 147 VAL 142 H LYS 143 n 148 LYS 143 H GLY 144 n 149 GLY 144 H TYR 145 n 150 TYR 145 H PHE 146 n 151 PHE 146 H PRO 147 n 152 PRO 147 H GLU 148 n 153 GLU 148 H PRO 149 n 154 PRO 149 H VAL 150 n 155 VAL 150 H THR 151 n 156 THR 151 H VAL 152 n 157 VAL 152 H THR 153 n 158 THR 153 H TRP 154 n 159 TRP 154 H ASN 155 n 160 ASN 155 H SER 156 n 161 SER 156 H GLY 157 n 162 GLY 157 H SER 158 n 163 SER 158 H LEU 159 n 164 LEU 159 H SER 160 n 165 SER 160 H SER 161 n 166 SER 161 H GLY 162 n 167 GLY 162 H VAL 163 n 168 VAL 163 H HIS 164 n 169 HIS 164 H THR 165 n 170 THR 165 H PHE 166 n 171 PHE 166 H PRO 167 n 172 PRO 167 H ALA 168 n 173 ALA 168 H VAL 169 n 174 VAL 169 H LEU 170 n 175 LEU 170 H GLN 171 n 176 GLN 171 H SER 172 n 177 SER 172 H ASP 173 n 178 ASP 173 H LEU 174 n 179 LEU 174 H TYR 175 n 180 TYR 175 H THR 176 n 181 THR 176 H LEU 177 n 182 LEU 177 H SER 178 n 183 SER 178 H SER 179 n 184 SER 179 H SER 180 n 185 SER 180 H VAL 181 n 186 VAL 181 H THR 182 n 187 THR 182 H VAL 183 n 188 VAL 183 H PRO 184 n 189 PRO 184 H SER 185 n 190 SER 185 H SER 186 n 191 SER 186 H THR 187 n 192 THR 187 H TRP 188 n 193 TRP 188 H PRO 189 n 194 PRO 189 H SER 190 n 195 SER 190 H GLU 191 n 196 GLU 191 H THR 192 n 197 THR 192 H VAL 193 n 198 VAL 193 H THR 194 n 199 THR 194 H CYS 195 n 200 CYS 195 H ASN 196 n 201 ASN 196 H VAL 197 n 202 VAL 197 H ALA 198 n 203 ALA 198 H HIS 199 n 204 HIS 199 H PRO 200 n 205 PRO 200 H ALA 201 n 206 ALA 201 H SER 202 n 207 SER 202 H SER 203 n 208 SER 203 H THR 204 n 209 THR 204 H LYS 205 n 210 LYS 205 H VAL 206 n 211 VAL 206 H ASP 207 n 212 ASP 207 H LYS 208 n 213 LYS 208 H LYS 209 n 214 LYS 209 H ILE 210 n 215 ILE 210 H VAL 211 n 216 VAL 211 H PRO 212 n 217 PRO 212 H n 218 213 H ASN 1 n 1 ASN 1 L ILE 2 n 2 ILE 2 L VAL 3 n 3 VAL 3 L LEU 4 n 4 LEU 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L VAL 9 n 9 VAL 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L ALA 12 n 12 ALA 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L GLN 17 n 17 GLN 17 L ARG 18 n 18 ARG 18 L ALA 19 n 19 ALA 19 L THR 20 n 20 THR 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L ARG 24 n 24 ARG 24 L ALA 25 n 25 ALA 25 L SER 26 n 26 SER 26 L GLU 27 n 27 GLU 27 L SER 27 n 28 A SER 27 L VAL 27 n 29 B VAL 27 L ASP 27 n 30 C ASP 27 L GLY 27 n 31 D GLY 27 L TYR 28 n 32 TYR 28 L GLY 29 n 33 GLY 29 L ASN 30 n 34 ASN 30 L SER 31 n 35 SER 31 L PHE 32 n 36 PHE 32 L LEU 33 n 37 LEU 33 L HIS 34 n 38 HIS 34 L TRP 35 n 39 TRP 35 L PHE 36 n 40 PHE 36 L GLN 37 n 41 GLN 37 L GLN 38 n 42 GLN 38 L LYS 39 n 43 LYS 39 L PRO 40 n 44 PRO 40 L GLY 41 n 45 GLY 41 L GLN 42 n 46 GLN 42 L PRO 43 n 47 PRO 43 L PRO 44 n 48 PRO 44 L LYS 45 n 49 LYS 45 L LEU 46 n 50 LEU 46 L LEU 47 n 51 LEU 47 L ILE 48 n 52 ILE 48 L TYR 49 n 53 TYR 49 L LEU 50 n 54 LEU 50 L ALA 51 n 55 ALA 51 L SER 52 n 56 SER 52 L ASN 53 n 57 ASN 53 L LEU 54 n 58 LEU 54 L ASN 55 n 59 ASN 55 L SER 56 n 60 SER 56 L GLY 57 n 61 GLY 57 L VAL 58 n 62 VAL 58 L PRO 59 n 63 PRO 59 L ALA 60 n 64 ALA 60 L ARG 61 n 65 ARG 61 L PHE 62 n 66 PHE 62 L SER 63 n 67 SER 63 L GLY 64 n 68 GLY 64 L SER 65 n 69 SER 65 L GLY 66 n 70 GLY 66 L SER 67 n 71 SER 67 L ARG 68 n 72 ARG 68 L THR 69 n 73 THR 69 L ASP 70 n 74 ASP 70 L PHE 71 n 75 PHE 71 L THR 72 n 76 THR 72 L LEU 73 n 77 LEU 73 L THR 74 n 78 THR 74 L ILE 75 n 79 ILE 75 L ASP 76 n 80 ASP 76 L PRO 77 n 81 PRO 77 L VAL 78 n 82 VAL 78 L GLU 79 n 83 GLU 79 L ALA 80 n 84 ALA 80 L ASP 81 n 85 ASP 81 L ASP 82 n 86 ASP 82 L ALA 83 n 87 ALA 83 L ALA 84 n 88 ALA 84 L THR 85 n 89 THR 85 L TYR 86 n 90 TYR 86 L TYR 87 n 91 TYR 87 L CYS 88 n 92 CYS 88 L GLN 89 n 93 GLN 89 L GLN 90 n 94 GLN 90 L ASN 91 n 95 ASN 91 L ASN 92 n 96 ASN 92 L VAL 93 n 97 VAL 93 L ASP 94 n 98 ASP 94 L PRO 95 n 99 PRO 95 L TRP 96 n 100 TRP 96 L THR 97 n 101 THR 97 L PHE 98 n 102 PHE 98 L GLY 99 n 103 GLY 99 L GLY 100 n 104 GLY 100 L GLY 101 n 105 GLY 101 L THR 102 n 106 THR 102 L LYS 103 n 107 LYS 103 L LEU 104 n 108 LEU 104 L GLU 105 n 109 GLU 105 L ILE 106 n 110 ILE 106 L LYS 107 n 111 LYS 107 L ARG 108 n 112 ARG 108 L ALA 109 n 113 ALA 109 L ASP 110 n 114 ASP 110 L ALA 111 n 115 ALA 111 L ALA 112 n 116 ALA 112 L PRO 113 n 117 PRO 113 L THR 114 n 118 THR 114 L VAL 115 n 119 VAL 115 L SER 116 n 120 SER 116 L ILE 117 n 121 ILE 117 L PHE 118 n 122 PHE 118 L PRO 119 n 123 PRO 119 L PRO 120 n 124 PRO 120 L SER 121 n 125 SER 121 L SER 122 n 126 SER 122 L GLU 123 n 127 GLU 123 L GLN 124 n 128 GLN 124 L LEU 125 n 129 LEU 125 L THR 126 n 130 THR 126 L SER 127 n 131 SER 127 L GLY 128 n 132 GLY 128 L GLY 129 n 133 GLY 129 L ALA 130 n 134 ALA 130 L SER 131 n 135 SER 131 L VAL 132 n 136 VAL 132 L VAL 133 n 137 VAL 133 L CYS 134 n 138 CYS 134 L PHE 135 n 139 PHE 135 L LEU 136 n 140 LEU 136 L ASN 137 n 141 ASN 137 L ASN 138 n 142 ASN 138 L PHE 139 n 143 PHE 139 L TYR 140 n 144 TYR 140 L PRO 141 n 145 PRO 141 L LYS 142 n 146 LYS 142 L ASP 143 n 147 ASP 143 L ILE 144 n 148 ILE 144 L ASN 145 n 149 ASN 145 L VAL 146 n 150 VAL 146 L LYS 147 n 151 LYS 147 L TRP 148 n 152 TRP 148 L LYS 149 n 153 LYS 149 L ILE 150 n 154 ILE 150 L ASP 151 n 155 ASP 151 L GLY 152 n 156 GLY 152 L SER 153 n 157 SER 153 L GLU 154 n 158 GLU 154 L ARG 155 n 159 ARG 155 L GLN 156 n 160 GLN 156 L ASN 157 n 161 ASN 157 L GLY 158 n 162 GLY 158 L VAL 159 n 163 VAL 159 L LEU 160 n 164 LEU 160 L ASN 161 n 165 ASN 161 L SER 162 n 166 SER 162 L TRP 163 n 167 TRP 163 L THR 164 n 168 THR 164 L ASP 165 n 169 ASP 165 L GLN 166 n 170 GLN 166 L ASP 167 n 171 ASP 167 L SER 168 n 172 SER 168 L LYS 169 n 173 LYS 169 L ASP 170 n 174 ASP 170 L SER 171 n 175 SER 171 L THR 172 n 176 THR 172 L TYR 173 n 177 TYR 173 L SER 174 n 178 SER 174 L MET 175 n 179 MET 175 L SER 176 n 180 SER 176 L SER 177 n 181 SER 177 L THR 178 n 182 THR 178 L LEU 179 n 183 LEU 179 L THR 180 n 184 THR 180 L LEU 181 n 185 LEU 181 L THR 182 n 186 THR 182 L LYS 183 n 187 LYS 183 L ASP 184 n 188 ASP 184 L GLU 185 n 189 GLU 185 L TYR 186 n 190 TYR 186 L GLU 187 n 191 GLU 187 L ARG 188 n 192 ARG 188 L HIS 189 n 193 HIS 189 L ASN 190 n 194 ASN 190 L SER 191 n 195 SER 191 L TYR 192 n 196 TYR 192 L THR 193 n 197 THR 193 L CYS 194 n 198 CYS 194 L GLU 195 n 199 GLU 195 L ALA 196 n 200 ALA 196 L THR 197 n 201 THR 197 L HIS 198 n 202 HIS 198 L LYS 199 n 203 LYS 199 L THR 200 n 204 THR 200 L SER 201 n 205 SER 201 L THR 202 n 206 THR 202 L SER 203 n 207 SER 203 L PRO 204 n 208 PRO 204 L ILE 205 n 209 ILE 205 L VAL 206 n 210 VAL 206 L LYS 207 n 211 LYS 207 L SER 208 n 212 SER 208 L PHE 209 n 213 PHE 209 L ASN 210 n 214 ASN 210 L ARG 211 n 215 ARG 211 L n 216 212 L n 217 213 L n 218 214 L n 1 411 P n 2 412 P LEU 413 n 3 LEU 413 P ILE 414 n 4 ILE 414 P ASN 415 n 5 ASN 415 P THR 416 n 6 THR 416 P ASN 417 n 7 ASN 417 P GLY 418 n 8 GLY 418 P SER 419 n 9 SER 419 P TRP 420 n 10 TRP 420 P HIS 421 n 11 HIS 421 P ILE 422 n 12 ILE 422 P n 13 423 P n 14 424 P author_and_software_defined_assembly PISA 3 trimeric 4590 -33 19420 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H N SER 7 A N SER 7 H O THR 21 A O THR 21 H N CYS 22 A N CYS 22 H O TYR 78 A O TYR 78 H O TYR 79 A O TYR 79 H N THR 70 A N THR 70 H N VAL 12 A N VAL 12 H O THR 110 A O THR 115 H O THR 107 A O THR 112 H N TYR 90 A N TYR 93 H O TYR 91 A O TYR 94 H N ILE 37 A N ILE 37 H N ARG 38 A N ARG 38 H O GLU 46 A O GLU 46 H N TYR 50 A N TYR 50 H O TYR 58 A O TYR 58 H N VAL 12 A N VAL 12 H O THR 110 A O THR 115 H O THR 107 A O THR 112 H N TYR 90 A N TYR 93 H N LEU 94 A N LEU 97 H O TYR 102 A O TYR 107 H N SER 120 A N SER 125 H O LYS 143 A O LYS 148 H N TYR 145 A N TYR 150 H O TYR 175 A O TYR 180 H O SER 180 A O SER 185 H N HIS 164 A N HIS 169 H N SER 120 A N SER 125 H O LYS 143 A O LYS 148 H N TYR 145 A N TYR 150 H O TYR 175 A O TYR 180 H O LEU 174 A O LEU 179 H N GLN 171 A N GLN 176 H N THR 151 A N THR 156 H O ALA 198 A O ALA 203 H N VAL 197 A N VAL 202 H O VAL 206 A O VAL 211 L N SER 7 B N SER 7 L O SER 22 B O SER 22 L N ILE 21 B N ILE 21 L O LEU 73 B O LEU 77 L O THR 72 B O THR 76 L N SER 65 B N SER 69 L N VAL 13 B N VAL 13 L O LYS 107 B O LYS 111 L O LEU 104 B O LEU 108 L N ALA 84 B N ALA 88 L O THR 85 B O THR 89 L N GLN 38 B N GLN 42 L N TRP 35 B N TRP 39 L O LEU 47 B O LEU 51 L N TYR 49 B N TYR 53 L O ASN 53 B O ASN 57 L N VAL 13 B N VAL 13 L O LYS 107 B O LYS 111 L O LEU 104 B O LEU 108 L N ALA 84 B N ALA 88 L N GLN 90 B N GLN 94 L O THR 97 B O THR 101 L N SER 116 B N SER 120 L O PHE 135 B O PHE 139 L N CYS 134 B N CYS 138 L O SER 177 B O SER 181 L O THR 178 B O THR 182 L N LEU 160 B N LEU 164 L N LYS 147 B N LYS 151 L O GLU 195 B O GLU 199 L N ALA 196 B N ALA 200 L O ILE 205 B O ILE 209 P N THR 416 C N THR 6 P O SER 419 C O SER 9 1 H SER 28 A SER 28 1 Y 1 H ILE 29 A ILE 29 1 Y 1 H GLY 127 A GLY 132 1 Y 1 H SER 128 A SER 133 1 Y 1 H ALA 129 A ALA 134 1 Y 1 H ALA 130 A ALA 135 1 Y 1 H GLN 131 A GLN 136 1 Y 1 H THR 132 A THR 137 1 Y 1 H ARG 213 A ARG 218 1 Y 1 L ASN 212 B ASN 216 1 Y 1 L GLU 213 B GLU 217 1 Y 1 L CYS 214 B CYS 218 1 Y 1 P ILE 411 C ILE 1 1 Y 1 P GLN 412 C GLN 2 1 Y 1 P ASN 423 C ASN 13 1 Y 1 P ARG 424 C ARG 14 1 Y 1 15.11 2.30 115.30 130.41 H H H CA CB CG LEU LEU LEU 18 18 18 N 1 H SER 15 72.16 -6.82 1 H ASN 43 94.33 -12.46 1 H ALA 88 179.27 163.53 1 H LEU 124 -112.71 77.12 1 H SER 156 28.65 38.30 1 L LEU 15 -67.92 94.30 1 L GLN 17 -63.93 -173.18 1 L GLU 27 160.82 151.41 1 L ALA 51 87.32 -38.89 1 L SER 52 -157.59 12.29 1 L ARG 68 58.43 -83.43 1 L ASP 76 -171.98 104.61 1 L ALA 84 174.82 165.19 1 L ASP 110 -45.79 150.07 1 L SER 176 -161.40 98.32 1 L ASP 184 -92.09 -66.53 1 L GLU 185 -46.86 -10.81 1 L THR 200 -41.97 -19.99 1 L PRO 204 -48.47 154.46 1 P ASN 417 36.93 44.52 46.435 1.31 0.00 1.04 0.13 0.00 -0.66 0.921 0.866 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.31983 0.24015 0.24405 2.51 20.00 815 15613 15613 5.0 99.33 11.941 0.275 RANDOM 1 THROUGHOUT 2 MOLECULAR REPLACEMENT 0.772 0.380 0.80 0.80 1.40 MAXIMUM LIKELIHOOD MASK 2.51 20.00 6 3349 0 0 3343 0.016 0.022 3459 1.682 1.947 4739 8.029 5.000 441 38.887 24.485 136 19.691 15.000 541 20.500 15.000 12 0.103 0.200 545 0.008 0.021 2600 0.825 1.500 2182 1.534 2.000 3568 1.974 3.000 1275 3.269 4.500 1161 0.494 0.366 2.573 50 1076 20 93.60 2.5 50 4GAJ 16538 16538 2 2 1 99.3 2.5 2.64 1 96.8 data collection CrystalClear phasing PHASER refinement REFMAC 5.5.0109 data reduction MOSFLM data scaling SCALA Protein: AP33 chain H, Protein: AP33 chain L, Genome polyprotein Structure of the broadly neutralizing antibody AP33 in complex with its HCV epitope (E2 residues 411-424) 1 N N 2 N N 3 N N 4 N N 4 N N H THR 83 A THR 86 HELX_P H THR 87 A THR 90 5 1 5 H SER 156 A SER 161 HELX_P H SER 158 A SER 163 5 2 3 H SER 186 A SER 191 HELX_P H TRP 188 A TRP 193 5 3 3 L GLU 79 B GLU 83 HELX_P L ALA 83 B ALA 87 5 4 5 L THR 182 B THR 186 HELX_P L ARG 188 B ARG 192 1 5 7 disulf 2.077 H CYS 22 A SG CYS 22 1_555 H CYS 92 A SG CYS 95 1_555 disulf 2.036 H CYS 140 A SG CYS 145 1_555 H CYS 195 A SG CYS 200 1_555 disulf 2.106 L CYS 23 B SG CYS 23 1_555 L CYS 88 B SG CYS 92 1_555 disulf 2.035 A A L CYS 134 B SG CYS 138 1_555 L CYS 194 B SG CYS 198 1_555 disulf 2.041 B B L CYS 134 B SG CYS 138 1_555 L CYS 194 B SG CYS 198 1_555 IMMUNE SYSTEM antibody Fab, neutralizing antibody, HCV E2 binding, IMMUNE SYSTEM H PHE 146 A PHE 151 1 H PRO 147 A PRO 152 -1.04 H GLU 148 A GLU 153 1 H PRO 149 A PRO 154 -2.81 H TRP 188 A TRP 193 1 H PRO 189 A PRO 194 16.47 L SER 7 B SER 7 1 L PRO 8 B PRO 8 -9.14 L ASP 76 B ASP 80 1 L PRO 77 B PRO 81 3.68 L ASP 94 B ASP 98 1 L PRO 95 B PRO 99 0.34 L TYR 140 B TYR 144 1 L PRO 141 B PRO 145 2.39 Q9IY15_9HEPC UNP 3 94 Q9IY15 IQLINTNGSWHINR 4GAJ PDB 1 4GAJ 4GAJ PDB 2 4GAJ 94 107 4GAJ 411 424 Q9IY15 P 1 1 14 1 213 4GAJ 1 213 4GAJ H 2 1 218 1 214 4GAJ 1 214 4GAJ L 3 1 218 4 6 4 4 4 3 4 6 4 4 3 2 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H GLN 3 A GLN 3 H SER 7 A SER 7 H LEU 18 A LEU 18 H THR 25 A THR 25 H GLN 77 A GLN 77 H LEU 82 A LEU 82 H ILE 67 A ILE 67 H ASP 72 A ASP 72 H LEU 11 A LEU 11 H VAL 12 A VAL 12 H THR 107 A THR 112 H VAL 111 A VAL 116 H ALA 88 A ALA 91 H ILE 95 A ILE 98 H TYR 33 A TYR 33 H LYS 39 A LYS 39 H LEU 45 A LEU 45 H SER 52 A SER 52 H THR 57 A THR 57 H TYR 59 A TYR 59 H LEU 11 A LEU 11 H VAL 12 A VAL 12 H THR 107 A THR 112 H VAL 111 A VAL 116 H ALA 88 A ALA 91 H ILE 95 A ILE 98 H MET 100 A MET 105 H TRP 103 A TRP 108 B H SER 120 A SER 125 H PRO 123 A PRO 128 H MET 135 A MET 140 H TYR 145 A TYR 150 H LEU 174 A LEU 179 H PRO 184 A PRO 189 H VAL 163 A VAL 168 H THR 165 A THR 170 H SER 120 A SER 125 H PRO 123 A PRO 128 H MET 135 A MET 140 H TYR 145 A TYR 150 H LEU 174 A LEU 179 H PRO 184 A PRO 189 H VAL 169 A VAL 174 H GLN 171 A GLN 176 H THR 151 A THR 156 H TRP 154 A TRP 159 H THR 194 A THR 199 H ALA 198 A ALA 203 H LYS 205 A LYS 210 H LYS 209 A LYS 214 L LEU 4 B LEU 4 L SER 7 B SER 7 L ALA 19 B ALA 19 L ALA 25 B ALA 25 L ASP 70 B ASP 74 L ILE 75 B ILE 79 L PHE 62 B PHE 66 L SER 67 B SER 71 L SER 10 B SER 10 L SER 14 B SER 14 L THR 102 B THR 106 L LYS 107 B LYS 111 L ALA 84 B ALA 88 L GLN 90 B GLN 94 L LEU 33 B LEU 37 L GLN 38 B GLN 42 L LYS 45 B LYS 49 L TYR 49 B TYR 53 L ASN 53 B ASN 57 L LEU 54 B LEU 58 L SER 10 B SER 10 L SER 14 B SER 14 L THR 102 B THR 106 L LYS 107 B LYS 111 L ALA 84 B ALA 88 L GLN 90 B GLN 94 L THR 97 B THR 101 L PHE 98 B PHE 102 L THR 114 B THR 118 L PHE 118 B PHE 122 L ALA 130 B ALA 134 L PHE 139 B PHE 143 L TYR 173 B TYR 177 L LEU 181 B LEU 185 L VAL 159 B VAL 163 L ASN 161 B ASN 165 L VAL 146 B VAL 150 L ILE 150 B ILE 154 L SER 191 B SER 195 L ALA 196 B ALA 200 L ILE 205 B ILE 209 L ASN 210 B ASN 214 P ILE 414 C ILE 4 P THR 416 C THR 6 P SER 419 C SER 9 P HIS 421 C HIS 11 5 C 1 2 1