0.015149
0.000000
0.000000
0.000000
0.015149
0.000000
0.000000
0.000000
0.003796
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
66.009
66.009
263.457
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C8 H18 N2 O2
174.241
n
N-DIMETHYL-LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a putative lipoprotein (BF2707) from Bacteroides fragilis NCTC 9343 at 2.75 A resolution
10.2210/pdb4gbs/pdb
pdb_00004gbs
100
1
Rhodium-coated vertical and horizontal focusing mirrors; liquid-nitrogen cooled double crystal Si(111) monochromator
PIXEL
2012-05-31
DECTRIS PILATUS 6M
double crystal Si(111)
MAD
M
x-ray
1
0.9795
1.0
0.9184
1.0
BL12-2
SSRL
0.9795,0.9184
SYNCHROTRON
SSRL BEAMLINE BL12-2
23110.564
Putative lipoprotein
2
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
72
nat
water
no
yes
GNGILSSLYDEPETA(MLY)DFGFITIDHANHSGTVRVDATQYT(MLY)WNYINLHTLQIDSA(MLY)VTAEGADDPDTW
DLAIHRYDVKTNGGEVLETDYQSLSAL(MLY)NAGS(MSE)PQGIFVADEWTTN(MLY)IAVDVSH(MSE)(MSE)EDNG
YLIYAPSDFNPELS(MLY)WLNVDTSE(MSE)PPIYTPSN(MLY)VYLLR(MSE)(MLY)DDT(MSE)AAIRLVSY
(MSE)NAAGI(MLY)GY(MSE)TFDYIYPYEP
GNGILSSLYDEPETAKDFGFITIDHANHSGTVRVDATQYTKWNYINLHTLQIDSAKVTAEGADDPDTWDLAIHRYDVKTN
GGEVLETDYQSLSALKNAGSMPQGIFVADEWTTNKIAVDVSHMMEDNGYLIYAPSDFNPELSKWLNVDTSEMPPIYTPSN
KVYLLRMKDDTMAAIRLVSYMNAAGIKGYMTFDYIYPYEP
A,B
JCSG-396942
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NCTC 9343
sample
BF2707, BF9343_2622
272559
Bacteroides fragilis
562
Escherichia Coli
HK100
Plasmid
SpeedET
1
3.10
60.38
VAPOR DIFFUSION, SITTING DROP
9.0
2.40M ammonium sulfate, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
software
citation_author
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Refinement description
Database references
Database references
Derived calculations
1
0
2012-10-10
1
1
2017-11-15
1
2
2018-01-24
1
3
2023-02-01
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2012-07-27
REL
REL
SO4
SULFATE ION
HOH
water
1. THE CONSTRUCT (RESIDUES 25-223) WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. 2. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR TO CRYSTALLIZATION.
SO4
224
2
SO4
SO4
301
A
SO4
225
2
SO4
SO4
301
B
HOH
226
3
HOH
HOH
401
A
HOH
231
3
HOH
HOH
402
A
HOH
232
3
HOH
HOH
403
A
HOH
234
3
HOH
HOH
404
A
HOH
235
3
HOH
HOH
405
A
HOH
241
3
HOH
HOH
406
A
HOH
243
3
HOH
HOH
407
A
HOH
244
3
HOH
HOH
408
A
HOH
245
3
HOH
HOH
409
A
HOH
246
3
HOH
HOH
410
A
HOH
247
3
HOH
HOH
411
A
HOH
250
3
HOH
HOH
412
A
HOH
252
3
HOH
HOH
413
A
HOH
254
3
HOH
HOH
414
A
HOH
255
3
HOH
HOH
415
A
HOH
256
3
HOH
HOH
416
A
HOH
257
3
HOH
HOH
417
A
HOH
258
3
HOH
HOH
418
A
HOH
259
3
HOH
HOH
419
A
HOH
260
3
HOH
HOH
420
A
HOH
261
3
HOH
HOH
421
A
HOH
262
3
HOH
HOH
422
A
HOH
263
3
HOH
HOH
423
A
HOH
264
3
HOH
HOH
424
A
HOH
265
3
HOH
HOH
425
A
HOH
266
3
HOH
HOH
426
A
HOH
274
3
HOH
HOH
427
A
HOH
275
3
HOH
HOH
428
A
HOH
278
3
HOH
HOH
429
A
HOH
279
3
HOH
HOH
430
A
HOH
280
3
HOH
HOH
431
A
HOH
281
3
HOH
HOH
432
A
HOH
282
3
HOH
HOH
433
A
HOH
283
3
HOH
HOH
434
A
HOH
286
3
HOH
HOH
435
A
HOH
287
3
HOH
HOH
436
A
HOH
294
3
HOH
HOH
437
A
HOH
295
3
HOH
HOH
438
A
HOH
227
3
HOH
HOH
401
B
HOH
228
3
HOH
HOH
402
B
HOH
229
3
HOH
HOH
403
B
HOH
230
3
HOH
HOH
404
B
HOH
233
3
HOH
HOH
405
B
HOH
236
3
HOH
HOH
406
B
HOH
237
3
HOH
HOH
407
B
HOH
238
3
HOH
HOH
408
B
HOH
239
3
HOH
HOH
409
B
HOH
240
3
HOH
HOH
410
B
HOH
242
3
HOH
HOH
411
B
HOH
248
3
HOH
HOH
412
B
HOH
249
3
HOH
HOH
413
B
HOH
251
3
HOH
HOH
414
B
HOH
253
3
HOH
HOH
415
B
HOH
267
3
HOH
HOH
416
B
HOH
268
3
HOH
HOH
417
B
HOH
269
3
HOH
HOH
418
B
HOH
270
3
HOH
HOH
419
B
HOH
271
3
HOH
HOH
420
B
HOH
272
3
HOH
HOH
421
B
HOH
273
3
HOH
HOH
422
B
HOH
276
3
HOH
HOH
423
B
HOH
277
3
HOH
HOH
424
B
HOH
284
3
HOH
HOH
425
B
HOH
285
3
HOH
HOH
426
B
HOH
288
3
HOH
HOH
427
B
HOH
289
3
HOH
HOH
428
B
HOH
290
3
HOH
HOH
429
B
HOH
291
3
HOH
HOH
430
B
HOH
292
3
HOH
HOH
431
B
HOH
293
3
HOH
HOH
432
B
HOH
296
3
HOH
HOH
433
B
HOH
297
3
HOH
HOH
434
B
n
1
0
A
n
2
25
A
n
3
26
A
n
4
27
A
n
5
28
A
n
6
29
A
n
7
30
A
n
8
31
A
n
9
32
A
n
10
33
A
n
11
34
A
PRO
35
n
12
PRO
35
A
GLU
36
n
13
GLU
36
A
THR
37
n
14
THR
37
A
ALA
38
n
15
ALA
38
A
MLY
39
n
16
MLY
39
A
ASP
40
n
17
ASP
40
A
PHE
41
n
18
PHE
41
A
GLY
42
n
19
GLY
42
A
PHE
43
n
20
PHE
43
A
ILE
44
n
21
ILE
44
A
THR
45
n
22
THR
45
A
ILE
46
n
23
ILE
46
A
ASP
47
n
24
ASP
47
A
HIS
48
n
25
HIS
48
A
ALA
49
n
26
ALA
49
A
ASN
50
n
27
ASN
50
A
HIS
51
n
28
HIS
51
A
SER
52
n
29
SER
52
A
GLY
53
n
30
GLY
53
A
THR
54
n
31
THR
54
A
VAL
55
n
32
VAL
55
A
ARG
56
n
33
ARG
56
A
VAL
57
n
34
VAL
57
A
ASP
58
n
35
ASP
58
A
ALA
59
n
36
ALA
59
A
THR
60
n
37
THR
60
A
GLN
61
n
38
GLN
61
A
TYR
62
n
39
TYR
62
A
THR
63
n
40
THR
63
A
MLY
64
n
41
MLY
64
A
TRP
65
n
42
TRP
65
A
ASN
66
n
43
ASN
66
A
TYR
67
n
44
TYR
67
A
ILE
68
n
45
ILE
68
A
ASN
69
n
46
ASN
69
A
LEU
70
n
47
LEU
70
A
HIS
71
n
48
HIS
71
A
THR
72
n
49
THR
72
A
LEU
73
n
50
LEU
73
A
GLN
74
n
51
GLN
74
A
ILE
75
n
52
ILE
75
A
ASP
76
n
53
ASP
76
A
SER
77
n
54
SER
77
A
ALA
78
n
55
ALA
78
A
MLY
79
n
56
MLY
79
A
VAL
80
n
57
VAL
80
A
THR
81
n
58
THR
81
A
ALA
82
n
59
ALA
82
A
GLU
83
n
60
GLU
83
A
GLY
84
n
61
GLY
84
A
ALA
85
n
62
ALA
85
A
ASP
86
n
63
ASP
86
A
ASP
87
n
64
ASP
87
A
PRO
88
n
65
PRO
88
A
ASP
89
n
66
ASP
89
A
THR
90
n
67
THR
90
A
TRP
91
n
68
TRP
91
A
ASP
92
n
69
ASP
92
A
LEU
93
n
70
LEU
93
A
ALA
94
n
71
ALA
94
A
ILE
95
n
72
ILE
95
A
HIS
96
n
73
HIS
96
A
ARG
97
n
74
ARG
97
A
TYR
98
n
75
TYR
98
A
ASP
99
n
76
ASP
99
A
VAL
100
n
77
VAL
100
A
LYS
101
n
78
LYS
101
A
THR
102
n
79
THR
102
A
ASN
103
n
80
ASN
103
A
GLY
104
n
81
GLY
104
A
GLY
105
n
82
GLY
105
A
GLU
106
n
83
GLU
106
A
VAL
107
n
84
VAL
107
A
LEU
108
n
85
LEU
108
A
GLU
109
n
86
GLU
109
A
THR
110
n
87
THR
110
A
ASP
111
n
88
ASP
111
A
TYR
112
n
89
TYR
112
A
GLN
113
n
90
GLN
113
A
SER
114
n
91
SER
114
A
LEU
115
n
92
LEU
115
A
SER
116
n
93
SER
116
A
ALA
117
n
94
ALA
117
A
LEU
118
n
95
LEU
118
A
MLY
119
n
96
MLY
119
A
ASN
120
n
97
ASN
120
A
ALA
121
n
98
ALA
121
A
GLY
122
n
99
GLY
122
A
SER
123
n
100
SER
123
A
MSE
124
n
101
MSE
124
A
PRO
125
n
102
PRO
125
A
GLN
126
n
103
GLN
126
A
GLY
127
n
104
GLY
127
A
ILE
128
n
105
ILE
128
A
PHE
129
n
106
PHE
129
A
VAL
130
n
107
VAL
130
A
ALA
131
n
108
ALA
131
A
ASP
132
n
109
ASP
132
A
GLU
133
n
110
GLU
133
A
TRP
134
n
111
TRP
134
A
THR
135
n
112
THR
135
A
THR
136
n
113
THR
136
A
ASN
137
n
114
ASN
137
A
MLY
138
n
115
MLY
138
A
ILE
139
n
116
ILE
139
A
ALA
140
n
117
ALA
140
A
VAL
141
n
118
VAL
141
A
ASP
142
n
119
ASP
142
A
VAL
143
n
120
VAL
143
A
SER
144
n
121
SER
144
A
HIS
145
n
122
HIS
145
A
MSE
146
n
123
MSE
146
A
n
124
147
A
n
125
148
A
n
126
149
A
n
127
150
A
GLY
151
n
128
GLY
151
A
TYR
152
n
129
TYR
152
A
LEU
153
n
130
LEU
153
A
ILE
154
n
131
ILE
154
A
TYR
155
n
132
TYR
155
A
ALA
156
n
133
ALA
156
A
PRO
157
n
134
PRO
157
A
SER
158
n
135
SER
158
A
ASP
159
n
136
ASP
159
A
PHE
160
n
137
PHE
160
A
ASN
161
n
138
ASN
161
A
PRO
162
n
139
PRO
162
A
GLU
163
n
140
GLU
163
A
LEU
164
n
141
LEU
164
A
SER
165
n
142
SER
165
A
MLY
166
n
143
MLY
166
A
TRP
167
n
144
TRP
167
A
LEU
168
n
145
LEU
168
A
ASN
169
n
146
ASN
169
A
VAL
170
n
147
VAL
170
A
ASP
171
n
148
ASP
171
A
THR
172
n
149
THR
172
A
SER
173
n
150
SER
173
A
GLU
174
n
151
GLU
174
A
MSE
175
n
152
MSE
175
A
PRO
176
n
153
PRO
176
A
PRO
177
n
154
PRO
177
A
ILE
178
n
155
ILE
178
A
TYR
179
n
156
TYR
179
A
THR
180
n
157
THR
180
A
PRO
181
n
158
PRO
181
A
SER
182
n
159
SER
182
A
ASN
183
n
160
ASN
183
A
MLY
184
n
161
MLY
184
A
VAL
185
n
162
VAL
185
A
TYR
186
n
163
TYR
186
A
LEU
187
n
164
LEU
187
A
LEU
188
n
165
LEU
188
A
ARG
189
n
166
ARG
189
A
MSE
190
n
167
MSE
190
A
MLY
191
n
168
MLY
191
A
ASP
192
n
169
ASP
192
A
ASP
193
n
170
ASP
193
A
THR
194
n
171
THR
194
A
MSE
195
n
172
MSE
195
A
ALA
196
n
173
ALA
196
A
ALA
197
n
174
ALA
197
A
ILE
198
n
175
ILE
198
A
ARG
199
n
176
ARG
199
A
LEU
200
n
177
LEU
200
A
VAL
201
n
178
VAL
201
A
SER
202
n
179
SER
202
A
TYR
203
n
180
TYR
203
A
MSE
204
n
181
MSE
204
A
ASN
205
n
182
ASN
205
A
ALA
206
n
183
ALA
206
A
ALA
207
n
184
ALA
207
A
GLY
208
n
185
GLY
208
A
ILE
209
n
186
ILE
209
A
MLY
210
n
187
MLY
210
A
GLY
211
n
188
GLY
211
A
TYR
212
n
189
TYR
212
A
MSE
213
n
190
MSE
213
A
THR
214
n
191
THR
214
A
PHE
215
n
192
PHE
215
A
ASP
216
n
193
ASP
216
A
TYR
217
n
194
TYR
217
A
ILE
218
n
195
ILE
218
A
TYR
219
n
196
TYR
219
A
PRO
220
n
197
PRO
220
A
TYR
221
n
198
TYR
221
A
GLU
222
n
199
GLU
222
A
PRO
223
n
200
PRO
223
A
n
1
0
B
n
2
25
B
n
3
26
B
n
4
27
B
n
5
28
B
n
6
29
B
n
7
30
B
n
8
31
B
n
9
32
B
n
10
33
B
n
11
34
B
n
12
35
B
n
13
36
B
n
14
37
B
ALA
38
n
15
ALA
38
B
MLY
39
n
16
MLY
39
B
ASP
40
n
17
ASP
40
B
PHE
41
n
18
PHE
41
B
GLY
42
n
19
GLY
42
B
PHE
43
n
20
PHE
43
B
ILE
44
n
21
ILE
44
B
THR
45
n
22
THR
45
B
ILE
46
n
23
ILE
46
B
ASP
47
n
24
ASP
47
B
HIS
48
n
25
HIS
48
B
ALA
49
n
26
ALA
49
B
ASN
50
n
27
ASN
50
B
HIS
51
n
28
HIS
51
B
SER
52
n
29
SER
52
B
GLY
53
n
30
GLY
53
B
THR
54
n
31
THR
54
B
VAL
55
n
32
VAL
55
B
ARG
56
n
33
ARG
56
B
VAL
57
n
34
VAL
57
B
ASP
58
n
35
ASP
58
B
ALA
59
n
36
ALA
59
B
THR
60
n
37
THR
60
B
GLN
61
n
38
GLN
61
B
TYR
62
n
39
TYR
62
B
THR
63
n
40
THR
63
B
MLY
64
n
41
MLY
64
B
TRP
65
n
42
TRP
65
B
ASN
66
n
43
ASN
66
B
TYR
67
n
44
TYR
67
B
ILE
68
n
45
ILE
68
B
ASN
69
n
46
ASN
69
B
LEU
70
n
47
LEU
70
B
HIS
71
n
48
HIS
71
B
THR
72
n
49
THR
72
B
LEU
73
n
50
LEU
73
B
GLN
74
n
51
GLN
74
B
ILE
75
n
52
ILE
75
B
ASP
76
n
53
ASP
76
B
SER
77
n
54
SER
77
B
ALA
78
n
55
ALA
78
B
MLY
79
n
56
MLY
79
B
VAL
80
n
57
VAL
80
B
THR
81
n
58
THR
81
B
ALA
82
n
59
ALA
82
B
GLU
83
n
60
GLU
83
B
GLY
84
n
61
GLY
84
B
ALA
85
n
62
ALA
85
B
ASP
86
n
63
ASP
86
B
ASP
87
n
64
ASP
87
B
PRO
88
n
65
PRO
88
B
ASP
89
n
66
ASP
89
B
THR
90
n
67
THR
90
B
TRP
91
n
68
TRP
91
B
ASP
92
n
69
ASP
92
B
LEU
93
n
70
LEU
93
B
ALA
94
n
71
ALA
94
B
ILE
95
n
72
ILE
95
B
HIS
96
n
73
HIS
96
B
ARG
97
n
74
ARG
97
B
TYR
98
n
75
TYR
98
B
ASP
99
n
76
ASP
99
B
VAL
100
n
77
VAL
100
B
LYS
101
n
78
LYS
101
B
THR
102
n
79
THR
102
B
ASN
103
n
80
ASN
103
B
GLY
104
n
81
GLY
104
B
GLY
105
n
82
GLY
105
B
GLU
106
n
83
GLU
106
B
VAL
107
n
84
VAL
107
B
LEU
108
n
85
LEU
108
B
GLU
109
n
86
GLU
109
B
THR
110
n
87
THR
110
B
ASP
111
n
88
ASP
111
B
TYR
112
n
89
TYR
112
B
GLN
113
n
90
GLN
113
B
SER
114
n
91
SER
114
B
LEU
115
n
92
LEU
115
B
SER
116
n
93
SER
116
B
ALA
117
n
94
ALA
117
B
LEU
118
n
95
LEU
118
B
MLY
119
n
96
MLY
119
B
ASN
120
n
97
ASN
120
B
ALA
121
n
98
ALA
121
B
GLY
122
n
99
GLY
122
B
SER
123
n
100
SER
123
B
MSE
124
n
101
MSE
124
B
PRO
125
n
102
PRO
125
B
GLN
126
n
103
GLN
126
B
GLY
127
n
104
GLY
127
B
ILE
128
n
105
ILE
128
B
PHE
129
n
106
PHE
129
B
VAL
130
n
107
VAL
130
B
ALA
131
n
108
ALA
131
B
ASP
132
n
109
ASP
132
B
GLU
133
n
110
GLU
133
B
TRP
134
n
111
TRP
134
B
THR
135
n
112
THR
135
B
THR
136
n
113
THR
136
B
ASN
137
n
114
ASN
137
B
MLY
138
n
115
MLY
138
B
ILE
139
n
116
ILE
139
B
ALA
140
n
117
ALA
140
B
VAL
141
n
118
VAL
141
B
ASP
142
n
119
ASP
142
B
VAL
143
n
120
VAL
143
B
SER
144
n
121
SER
144
B
HIS
145
n
122
HIS
145
B
MSE
146
n
123
MSE
146
B
MSE
147
n
124
MSE
147
B
GLU
148
n
125
GLU
148
B
ASP
149
n
126
ASP
149
B
ASN
150
n
127
ASN
150
B
GLY
151
n
128
GLY
151
B
TYR
152
n
129
TYR
152
B
LEU
153
n
130
LEU
153
B
ILE
154
n
131
ILE
154
B
TYR
155
n
132
TYR
155
B
ALA
156
n
133
ALA
156
B
PRO
157
n
134
PRO
157
B
SER
158
n
135
SER
158
B
ASP
159
n
136
ASP
159
B
PHE
160
n
137
PHE
160
B
ASN
161
n
138
ASN
161
B
PRO
162
n
139
PRO
162
B
GLU
163
n
140
GLU
163
B
LEU
164
n
141
LEU
164
B
SER
165
n
142
SER
165
B
MLY
166
n
143
MLY
166
B
TRP
167
n
144
TRP
167
B
LEU
168
n
145
LEU
168
B
ASN
169
n
146
ASN
169
B
VAL
170
n
147
VAL
170
B
ASP
171
n
148
ASP
171
B
THR
172
n
149
THR
172
B
SER
173
n
150
SER
173
B
GLU
174
n
151
GLU
174
B
MSE
175
n
152
MSE
175
B
PRO
176
n
153
PRO
176
B
PRO
177
n
154
PRO
177
B
ILE
178
n
155
ILE
178
B
TYR
179
n
156
TYR
179
B
THR
180
n
157
THR
180
B
PRO
181
n
158
PRO
181
B
SER
182
n
159
SER
182
B
ASN
183
n
160
ASN
183
B
MLY
184
n
161
MLY
184
B
VAL
185
n
162
VAL
185
B
TYR
186
n
163
TYR
186
B
LEU
187
n
164
LEU
187
B
LEU
188
n
165
LEU
188
B
ARG
189
n
166
ARG
189
B
MSE
190
n
167
MSE
190
B
MLY
191
n
168
MLY
191
B
ASP
192
n
169
ASP
192
B
ASP
193
n
170
ASP
193
B
THR
194
n
171
THR
194
B
MSE
195
n
172
MSE
195
B
ALA
196
n
173
ALA
196
B
ALA
197
n
174
ALA
197
B
ILE
198
n
175
ILE
198
B
ARG
199
n
176
ARG
199
B
LEU
200
n
177
LEU
200
B
VAL
201
n
178
VAL
201
B
SER
202
n
179
SER
202
B
TYR
203
n
180
TYR
203
B
MSE
204
n
181
MSE
204
B
ASN
205
n
182
ASN
205
B
ALA
206
n
183
ALA
206
B
ALA
207
n
184
ALA
207
B
GLY
208
n
185
GLY
208
B
ILE
209
n
186
ILE
209
B
MLY
210
n
187
MLY
210
B
GLY
211
n
188
GLY
211
B
TYR
212
n
189
TYR
212
B
MSE
213
n
190
MSE
213
B
THR
214
n
191
THR
214
B
PHE
215
n
192
PHE
215
B
ASP
216
n
193
ASP
216
B
TYR
217
n
194
TYR
217
B
ILE
218
n
195
ILE
218
B
TYR
219
n
196
TYR
219
B
PRO
220
n
197
PRO
220
B
TYR
221
n
198
TYR
221
B
GLU
222
n
199
GLU
222
B
PRO
223
n
200
PRO
223
B
6.7555
0.0926
2.1841
4.1018
1.1800
3.6696
0.0772
-0.4843
0.6149
0.0732
-0.3397
-0.1551
0.2220
-0.4431
0.2625
-0.3116
-0.1059
-0.0358
-0.0265
-0.0890
-0.1324
refined
73.4182
99.4287
26.4875
X-RAY DIFFRACTION
4.4258
-2.4755
-3.5016
5.0144
3.4944
6.5774
0.2667
0.4238
-0.2718
-0.6655
-0.3092
0.3241
-0.1569
-0.1330
0.0425
-0.1845
0.0047
-0.1575
-0.0805
-0.0466
-0.2406
refined
111.4080
94.3640
10.2489
X-RAY DIFFRACTION
A
35
A
223
X-RAY DIFFRACTION
1
{ A|35 - 223 }
B
38
B
223
X-RAY DIFFRACTION
2
{ B|38 - 223 }
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
MLY
39
N-DIMETHYL-LYSINE
A
MLY
16
LYS
A
MLY
64
N-DIMETHYL-LYSINE
A
MLY
41
LYS
A
MLY
79
N-DIMETHYL-LYSINE
A
MLY
56
LYS
A
MLY
119
N-DIMETHYL-LYSINE
A
MLY
96
LYS
A
MSE
124
SELENOMETHIONINE
A
MSE
101
MET
A
MLY
138
N-DIMETHYL-LYSINE
A
MLY
115
LYS
A
MSE
146
SELENOMETHIONINE
A
MSE
123
MET
A
MLY
166
N-DIMETHYL-LYSINE
A
MLY
143
LYS
A
MSE
175
SELENOMETHIONINE
A
MSE
152
MET
A
MLY
184
N-DIMETHYL-LYSINE
A
MLY
161
LYS
A
MSE
190
SELENOMETHIONINE
A
MSE
167
MET
A
MLY
191
N-DIMETHYL-LYSINE
A
MLY
168
LYS
A
MSE
195
SELENOMETHIONINE
A
MSE
172
MET
A
MSE
204
SELENOMETHIONINE
A
MSE
181
MET
A
MLY
210
N-DIMETHYL-LYSINE
A
MLY
187
LYS
A
MSE
213
SELENOMETHIONINE
A
MSE
190
MET
B
MLY
39
N-DIMETHYL-LYSINE
B
MLY
16
LYS
B
MLY
64
N-DIMETHYL-LYSINE
B
MLY
41
LYS
B
MLY
79
N-DIMETHYL-LYSINE
B
MLY
56
LYS
B
MLY
119
N-DIMETHYL-LYSINE
B
MLY
96
LYS
B
MSE
124
SELENOMETHIONINE
B
MSE
101
MET
B
MLY
138
N-DIMETHYL-LYSINE
B
MLY
115
LYS
B
MSE
146
SELENOMETHIONINE
B
MSE
123
MET
B
MSE
147
SELENOMETHIONINE
B
MSE
124
MET
B
MLY
166
N-DIMETHYL-LYSINE
B
MLY
143
LYS
B
MSE
175
SELENOMETHIONINE
B
MSE
152
MET
B
MLY
184
N-DIMETHYL-LYSINE
B
MLY
161
LYS
B
MSE
190
SELENOMETHIONINE
B
MSE
167
MET
B
MLY
191
N-DIMETHYL-LYSINE
B
MLY
168
LYS
B
MSE
195
SELENOMETHIONINE
B
MSE
172
MET
B
MSE
204
SELENOMETHIONINE
B
MSE
181
MET
B
MLY
210
N-DIMETHYL-LYSINE
B
MLY
187
LYS
B
MSE
213
SELENOMETHIONINE
B
MSE
190
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
42
A
N
GLY
19
A
O
ARG
56
A
O
ARG
33
A
N
VAL
55
A
N
VAL
32
A
O
PHE
215
A
O
PHE
192
A
O
ASP
216
A
O
ASP
193
A
N
ARG
199
A
N
ARG
176
A
O
ILE
198
A
O
ILE
175
A
N
TYR
186
A
N
TYR
163
A
O
ARG
189
A
O
ARG
166
A
N
GLU
106
A
N
GLU
83
A
N
VAL
107
A
N
VAL
84
A
O
VAL
130
A
O
VAL
107
A
O
GLY
84
A
O
GLY
61
A
N
THR
81
A
N
THR
58
A
O
GLN
74
A
O
GLN
51
A
N
ASN
69
A
N
ASN
46
A
N
ILE
68
A
N
ILE
45
A
O
LEU
93
A
O
LEU
70
A
N
HIS
96
A
N
HIS
73
A
O
ASP
99
A
O
ASP
76
A
N
GLU
133
A
N
GLU
110
A
O
PHE
160
A
O
PHE
137
A
N
ASN
169
A
N
ASN
146
A
O
THR
180
A
O
THR
157
B
N
GLY
42
B
N
GLY
19
B
O
ARG
56
B
O
ARG
33
B
N
VAL
57
B
N
VAL
34
B
O
MSE
213
B
O
MSE
190
B
O
THR
214
B
O
THR
191
B
N
VAL
201
B
N
VAL
178
B
O
ILE
198
B
O
ILE
175
B
N
TYR
186
B
N
TYR
163
B
O
ARG
189
B
O
ARG
166
B
N
GLU
106
B
N
GLU
83
B
N
VAL
107
B
N
VAL
84
B
O
VAL
130
B
O
VAL
107
B
O
GLY
84
B
O
GLY
61
B
N
THR
81
B
N
THR
58
B
O
GLN
74
B
O
GLN
51
B
N
ASN
69
B
N
ASN
46
B
N
ILE
68
B
N
ILE
45
B
O
LEU
93
B
O
LEU
70
B
N
HIS
96
B
N
HIS
73
B
O
ASP
99
B
O
ASP
76
B
N
VAL
141
B
N
VAL
118
B
O
ILE
154
B
O
ILE
131
B
N
ASN
169
B
N
ASN
146
B
O
THR
180
B
O
THR
157
1
A
CG
MLY
39
A
CG
MLY
16
1
Y
1
A
CD
MLY
39
A
CD
MLY
16
1
Y
1
A
CE
MLY
39
A
CE
MLY
16
1
Y
1
A
NZ
MLY
39
A
NZ
MLY
16
1
Y
1
A
CH1
MLY
39
A
CH1
MLY
16
1
Y
1
A
CH2
MLY
39
A
CH2
MLY
16
1
Y
1
A
CG
MLY
79
A
CG
MLY
56
1
Y
1
A
CD
MLY
79
A
CD
MLY
56
1
Y
1
A
CE
MLY
79
A
CE
MLY
56
1
Y
1
A
NZ
MLY
79
A
NZ
MLY
56
1
Y
1
A
CH1
MLY
79
A
CH1
MLY
56
1
Y
1
A
CH2
MLY
79
A
CH2
MLY
56
1
Y
1
A
NZ
MLY
119
A
NZ
MLY
96
1
Y
1
A
CH1
MLY
119
A
CH1
MLY
96
1
Y
1
A
CH2
MLY
119
A
CH2
MLY
96
1
Y
1
A
OG
SER
144
A
OG
SER
121
1
Y
1
A
CG
MSE
146
A
CG
MSE
123
1
Y
1
A
SE
MSE
146
A
SE
MSE
123
1
Y
1
A
CE
MSE
146
A
CE
MSE
123
1
Y
1
A
CG
TYR
152
A
CG
TYR
129
1
Y
1
A
CD1
TYR
152
A
CD1
TYR
129
1
Y
1
A
CD2
TYR
152
A
CD2
TYR
129
1
Y
1
A
CE1
TYR
152
A
CE1
TYR
129
1
Y
1
A
CE2
TYR
152
A
CE2
TYR
129
1
Y
1
A
CZ
TYR
152
A
CZ
TYR
129
1
Y
1
A
OH
TYR
152
A
OH
TYR
129
1
Y
1
B
CG
MLY
39
B
CG
MLY
16
1
Y
1
B
CD
MLY
39
B
CD
MLY
16
1
Y
1
B
CE
MLY
39
B
CE
MLY
16
1
Y
1
B
NZ
MLY
39
B
NZ
MLY
16
1
Y
1
B
CH1
MLY
39
B
CH1
MLY
16
1
Y
1
B
CH2
MLY
39
B
CH2
MLY
16
1
Y
1
B
CG
ASP
40
B
CG
ASP
17
1
Y
1
B
OD1
ASP
40
B
OD1
ASP
17
1
Y
1
B
OD2
ASP
40
B
OD2
ASP
17
1
Y
1
B
CH1
MLY
119
B
CH1
MLY
96
1
Y
1
B
CH2
MLY
119
B
CH2
MLY
96
1
Y
1
B
CG
GLU
148
B
CG
GLU
125
1
Y
1
B
CD
GLU
148
B
CD
GLU
125
1
Y
1
B
OE1
GLU
148
B
OE1
GLU
125
1
Y
1
B
OE2
GLU
148
B
OE2
GLU
125
1
Y
1
B
CG
ASP
149
B
CG
ASP
126
1
Y
1
B
OD1
ASP
149
B
OD1
ASP
126
1
Y
1
B
OD2
ASP
149
B
OD2
ASP
126
1
Y
1
B
CG
GLU
174
B
CG
GLU
151
1
Y
1
B
CD
GLU
174
B
CD
GLU
151
1
Y
1
B
OE1
GLU
174
B
OE1
GLU
151
1
Y
1
B
OE2
GLU
174
B
OE2
GLU
151
1
Y
1
B
CG
MSE
175
B
CG
MSE
152
1
Y
1
B
SE
MSE
175
B
SE
MSE
152
1
Y
1
B
CE
MSE
175
B
CE
MSE
152
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
ASN
25
A
ASN
2
1
Y
1
A
GLY
26
A
GLY
3
1
Y
1
A
ILE
27
A
ILE
4
1
Y
1
A
LEU
28
A
LEU
5
1
Y
1
A
SER
29
A
SER
6
1
Y
1
A
SER
30
A
SER
7
1
Y
1
A
LEU
31
A
LEU
8
1
Y
1
A
TYR
32
A
TYR
9
1
Y
1
A
ASP
33
A
ASP
10
1
Y
1
A
GLU
34
A
GLU
11
1
Y
1
A
MSE
147
A
MSE
124
1
Y
1
A
GLU
148
A
GLU
125
1
Y
1
A
ASP
149
A
ASP
126
1
Y
1
A
ASN
150
A
ASN
127
1
Y
1
B
GLY
0
B
GLY
1
1
Y
1
B
ASN
25
B
ASN
2
1
Y
1
B
GLY
26
B
GLY
3
1
Y
1
B
ILE
27
B
ILE
4
1
Y
1
B
LEU
28
B
LEU
5
1
Y
1
B
SER
29
B
SER
6
1
Y
1
B
SER
30
B
SER
7
1
Y
1
B
LEU
31
B
LEU
8
1
Y
1
B
TYR
32
B
TYR
9
1
Y
1
B
ASP
33
B
ASP
10
1
Y
1
B
GLU
34
B
GLU
11
1
Y
1
B
PRO
35
B
PRO
12
1
Y
1
B
GLU
36
B
GLU
13
1
Y
1
B
THR
37
B
THR
14
1
Y
1
A
ARG
97
53.20
-120.51
1
A
ASN
103
-102.62
76.86
1
B
ARG
97
52.64
-119.33
1
B
ASN
103
-102.59
76.45
1
B
MLY
138
-120.22
-50.26
1
B
MLY
138
-120.28
-50.73
1
B
ASP
149
-71.98
-108.65
1
B
ASN
150
-95.95
52.99
180.260
76.5292
37.510
-2.5059
0.0000
0.0000
-2.5059
0.0000
5.0117
0.9462
0.9335
1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 4. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REPRESENTATION (-AUTONCS).5.THE PROTEIN WAS SUBJECTED TO REDUCTIVE METHYLATION PRIOR TO CRYSTALLIZATION. LYSINE 101 APPEARS TO HAVE BEEN PROTECTED FROM REDUCTIVE METHYLATION AND WAS MODELED AS LYSINE. ALL OTHER LYSINES HAVE BEEN MODELED AS N-DIMETHYL-LYSINE (MLY). 6. SULFATE MOLECULES(SO4) FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE.
0.2251
0.1969
0.1983
2.4800
46.676
1106
21634
5.1100
99.6700
1.000
0.500
RANDOM
1
THROUGHOUT
0.000
MAD
0.467
2.4800
46.676
72
3015
10
0
2933
1322
SINUSOIDAL
8.000
78
HARMONIC
2.000
431
HARMONIC
5.000
3027
HARMONIC
20.000
407
SEMIHARMONIC
5.000
3419
SEMIHARMONIC
4.000
0.009
3027
HARMONIC
2.000
1.090
4143
HARMONIC
2.000
3.580
2.130
0.2816
0.2300
0.2326
2.6000
151
2641
2792
11
5.4100
99.6700
76.090
0.999
2.48
46.676
4GBS
21701
-3.000
0.072
0.078
1
14.650
137544
99.600
0.705
1.170
2.480
2.570
1.7
14273
2138
2133
1.269
1
99.800
0.785
0.775
2.570
2.670
2.4
13410
2076
2065
0.843
1
99.500
0.870
0.563
2.670
2.790
3.2
12508
2089
2079
0.617
1
99.500
0.954
0.297
2.790
2.940
5.7
13972
2178
2176
0.324
1
99.900
0.986
0.180
2.940
3.120
9.3
14282
2102
2101
0.195
1
100.000
0.995
0.105
3.120
3.360
14.4
14460
2162
2157
0.114
1
99.800
0.998
0.067
3.360
3.700
20.6
14086
2178
2176
0.072
1
99.900
0.998
0.050
3.700
4.230
24.8
12596
2186
2174
0.055
1
99.500
0.999
0.044
4.230
5.310
30.8
14381
2222
2215
0.048
1
99.700
0.998
0.050
5.310
46.676
30.0
13576
2483
2441
0.055
1
98.300
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
phasing
Eric de La Fortelle
sharp-develop@globalphasing.com
http://www.globalphasing.com/sharp/
SHARP
package
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
March 15, 2012
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
2.10.0
data reduction
XDS
phasing
SHELXD
refinement
BUSTER
2.10.0
Y
Crystal structure of a putative lipoprotein (BF2707) from Bacteroides fragilis NCTC 9343 at 2.75 A resolution
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
THR
37
A
THR
14
HELX_P
A
PHE
41
A
PHE
18
5
1
5
A
SER
114
A
SER
91
HELX_P
A
GLY
122
A
GLY
99
1
2
9
A
GLU
163
A
GLU
140
HELX_P
A
MLY
166
A
MLY
143
5
3
4
B
SER
114
B
SER
91
HELX_P
B
GLY
122
B
GLY
99
1
4
9
B
GLU
163
B
GLU
140
HELX_P
B
MLY
166
B
MLY
143
5
5
4
covale
1.353
both
A
ALA
38
A
C
ALA
15
1_555
A
MLY
39
A
N
MLY
16
1_555
covale
1.352
both
A
MLY
39
A
C
MLY
16
1_555
A
ASP
40
A
N
ASP
17
1_555
covale
1.321
both
A
THR
63
A
C
THR
40
1_555
A
MLY
64
A
N
MLY
41
1_555
covale
1.337
both
A
MLY
64
A
C
MLY
41
1_555
A
TRP
65
A
N
TRP
42
1_555
covale
1.341
both
A
ALA
78
A
C
ALA
55
1_555
A
MLY
79
A
N
MLY
56
1_555
covale
1.328
both
A
MLY
79
A
C
MLY
56
1_555
A
VAL
80
A
N
VAL
57
1_555
covale
1.352
both
A
LEU
118
A
C
LEU
95
1_555
A
MLY
119
A
N
MLY
96
1_555
covale
1.351
both
A
MLY
119
A
C
MLY
96
1_555
A
ASN
120
A
N
ASN
97
1_555
covale
1.335
both
A
SER
123
A
C
SER
100
1_555
A
MSE
124
A
N
MSE
101
1_555
covale
1.357
both
A
MSE
124
A
C
MSE
101
1_555
A
PRO
125
A
N
PRO
102
1_555
covale
1.355
both
A
ASN
137
A
C
ASN
114
1_555
A
MLY
138
A
N
MLY
115
1_555
covale
1.339
both
A
MLY
138
A
C
MLY
115
1_555
A
ILE
139
A
N
ILE
116
1_555
covale
1.345
both
A
HIS
145
A
C
HIS
122
1_555
A
MSE
146
A
N
MSE
123
1_555
covale
1.349
both
A
SER
165
A
C
SER
142
1_555
A
MLY
166
A
N
MLY
143
1_555
covale
1.365
both
A
MLY
166
A
C
MLY
143
1_555
A
TRP
167
A
N
TRP
144
1_555
covale
1.343
both
A
GLU
174
A
C
GLU
151
1_555
A
MSE
175
A
N
MSE
152
1_555
covale
1.355
both
A
MSE
175
A
C
MSE
152
1_555
A
PRO
176
A
N
PRO
153
1_555
covale
1.344
both
A
ASN
183
A
C
ASN
160
1_555
A
MLY
184
A
N
MLY
161
1_555
covale
1.338
both
A
MLY
184
A
C
MLY
161
1_555
A
VAL
185
A
N
VAL
162
1_555
covale
1.330
both
A
ARG
189
A
C
ARG
166
1_555
A
MSE
190
A
N
MSE
167
1_555
covale
1.351
both
A
MSE
190
A
C
MSE
167
1_555
A
MLY
191
A
N
MLY
168
1_555
covale
1.358
both
A
MLY
191
A
C
MLY
168
1_555
A
ASP
192
A
N
ASP
169
1_555
covale
1.327
both
A
THR
194
A
C
THR
171
1_555
A
MSE
195
A
N
MSE
172
1_555
covale
1.331
both
A
MSE
195
A
C
MSE
172
1_555
A
ALA
196
A
N
ALA
173
1_555
covale
1.329
both
A
TYR
203
A
C
TYR
180
1_555
A
MSE
204
A
N
MSE
181
1_555
covale
1.340
both
A
MSE
204
A
C
MSE
181
1_555
A
ASN
205
A
N
ASN
182
1_555
covale
1.321
both
A
ILE
209
A
C
ILE
186
1_555
A
MLY
210
A
N
MLY
187
1_555
covale
1.326
both
A
MLY
210
A
C
MLY
187
1_555
A
GLY
211
A
N
GLY
188
1_555
covale
1.347
both
A
TYR
212
A
C
TYR
189
1_555
A
MSE
213
A
N
MSE
190
1_555
covale
1.333
both
A
MSE
213
A
C
MSE
190
1_555
A
THR
214
A
N
THR
191
1_555
covale
1.360
both
B
ALA
38
B
C
ALA
15
1_555
B
MLY
39
B
N
MLY
16
1_555
covale
1.358
both
B
MLY
39
B
C
MLY
16
1_555
B
ASP
40
B
N
ASP
17
1_555
covale
1.331
both
B
THR
63
B
C
THR
40
1_555
B
MLY
64
B
N
MLY
41
1_555
covale
1.352
both
B
MLY
64
B
C
MLY
41
1_555
B
TRP
65
B
N
TRP
42
1_555
covale
1.330
both
B
ALA
78
B
C
ALA
55
1_555
B
MLY
79
B
N
MLY
56
1_555
covale
1.319
both
B
MLY
79
B
C
MLY
56
1_555
B
VAL
80
B
N
VAL
57
1_555
covale
1.351
both
B
LEU
118
B
C
LEU
95
1_555
B
MLY
119
B
N
MLY
96
1_555
covale
1.350
both
B
MLY
119
B
C
MLY
96
1_555
B
ASN
120
B
N
ASN
97
1_555
covale
1.333
both
B
SER
123
B
C
SER
100
1_555
B
MSE
124
B
N
MSE
101
1_555
covale
1.356
both
B
MSE
124
B
C
MSE
101
1_555
B
PRO
125
B
N
PRO
102
1_555
covale
1.347
both
B
ASN
137
B
C
ASN
114
1_555
B
MLY
138
B
N
MLY
115
1_555
covale
1.345
both
B
MLY
138
B
C
MLY
115
1_555
B
ILE
139
B
N
ILE
116
1_555
covale
1.334
both
B
HIS
145
B
C
HIS
122
1_555
B
MSE
146
B
N
MSE
123
1_555
covale
1.348
both
B
MSE
146
B
C
MSE
123
1_555
B
MSE
147
B
N
MSE
124
1_555
covale
1.356
both
B
MSE
147
B
C
MSE
124
1_555
B
GLU
148
B
N
GLU
125
1_555
covale
1.343
both
B
SER
165
B
C
SER
142
1_555
B
MLY
166
B
N
MLY
143
1_555
covale
1.371
both
B
MLY
166
B
C
MLY
143
1_555
B
TRP
167
B
N
TRP
144
1_555
covale
1.346
both
B
GLU
174
B
C
GLU
151
1_555
B
MSE
175
B
N
MSE
152
1_555
covale
1.359
both
B
MSE
175
B
C
MSE
152
1_555
B
PRO
176
B
N
PRO
153
1_555
covale
1.346
both
B
ASN
183
B
C
ASN
160
1_555
B
MLY
184
B
N
MLY
161
1_555
covale
1.338
both
B
MLY
184
B
C
MLY
161
1_555
B
VAL
185
B
N
VAL
162
1_555
covale
1.325
both
B
ARG
189
B
C
ARG
166
1_555
B
MSE
190
B
N
MSE
167
1_555
covale
1.351
both
B
MSE
190
B
C
MSE
167
1_555
B
MLY
191
B
N
MLY
168
1_555
covale
1.359
both
B
MLY
191
B
C
MLY
168
1_555
B
ASP
192
B
N
ASP
169
1_555
covale
1.333
both
B
THR
194
B
C
THR
171
1_555
B
MSE
195
B
N
MSE
172
1_555
covale
1.340
both
B
MSE
195
B
C
MSE
172
1_555
B
ALA
196
B
N
ALA
173
1_555
covale
1.361
both
B
TYR
203
B
C
TYR
180
1_555
B
MSE
204
B
N
MSE
181
1_555
covale
1.350
both
B
MSE
204
B
C
MSE
181
1_555
B
ASN
205
B
N
ASN
182
1_555
covale
1.328
both
B
ILE
209
B
C
ILE
186
1_555
B
MLY
210
B
N
MLY
187
1_555
covale
1.320
both
B
MLY
210
B
C
MLY
187
1_555
B
GLY
211
B
N
GLY
188
1_555
covale
1.343
both
B
TYR
212
B
C
TYR
189
1_555
B
MSE
213
B
N
MSE
190
1_555
covale
1.341
both
B
MSE
213
B
C
MSE
190
1_555
B
THR
214
B
N
THR
191
1_555
LIPID BINDING PROTEIN
PF14064 family, transport, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, HEME-BINDING PROTEIN, LIPID BINDING PROTEIN
A
MSE
175
A
MSE
152
1
A
PRO
176
A
PRO
153
-1.84
A
TYR
219
A
TYR
196
1
A
PRO
220
A
PRO
197
0.51
B
MSE
175
B
MSE
152
1
B
PRO
176
B
PRO
153
1.29
B
TYR
219
B
TYR
196
1
B
PRO
220
B
PRO
197
0.63
Q5LBW5_BACFN
UNP
1
25
Q5LBW5
NGILSSLYDEPETAKDFGFITIDHANHSGTVRVDATQYTKWNYINLHTLQIDSAKVTAEGADDPDTWDLAIHRYDVKTNG
GEVLETDYQSLSALKNAGSMPQGIFVADEWTTNKIAVDVSHMMEDNGYLIYAPSDFNPELSKWLNVDTSEMPPIYTPSNK
VYLLRMKDDTMAAIRLVSYMNAAGIKGYMTFDYIYPYEP
25
223
4GBS
25
223
Q5LBW5
A
1
2
200
25
223
4GBS
25
223
Q5LBW5
B
1
2
200
1
expression tag
GLY
0
4GBS
A
Q5LBW5
UNP
1
2
expression tag
GLY
0
4GBS
B
Q5LBW5
UNP
1
7
5
2
2
7
5
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
42
A
GLY
19
A
ASP
47
A
ASP
24
A
SER
52
A
SER
29
A
ASP
58
A
ASP
35
A
MLY
210
A
MLY
187
A
ILE
218
A
ILE
195
A
MSE
195
A
MSE
172
A
MSE
204
A
MSE
181
A
TYR
186
A
TYR
163
A
ARG
189
A
ARG
166
A
GLU
106
A
GLU
83
A
GLU
109
A
GLU
86
A
VAL
130
A
VAL
107
A
ALA
131
A
ALA
108
A
GLY
84
A
GLY
61
A
ALA
85
A
ALA
62
A
GLN
74
A
GLN
51
A
THR
81
A
THR
58
A
MLY
64
A
MLY
41
A
ASN
69
A
ASN
46
A
LEU
93
A
LEU
70
A
HIS
96
A
HIS
73
A
ASP
99
A
ASP
76
A
THR
102
A
THR
79
A
GLU
133
A
GLU
110
A
ASP
142
A
ASP
119
A
ILE
154
A
ILE
131
A
PHE
160
A
PHE
137
A
LEU
168
A
LEU
145
A
ASP
171
A
ASP
148
A
ILE
178
A
ILE
155
A
PRO
181
A
PRO
158
B
GLY
42
B
GLY
19
B
ASP
47
B
ASP
24
B
SER
52
B
SER
29
B
ASP
58
B
ASP
35
B
MLY
210
B
MLY
187
B
ILE
218
B
ILE
195
B
MSE
195
B
MSE
172
B
MSE
204
B
MSE
181
B
TYR
186
B
TYR
163
B
ARG
189
B
ARG
166
B
GLU
106
B
GLU
83
B
GLU
109
B
GLU
86
B
VAL
130
B
VAL
107
B
ALA
131
B
ALA
108
B
GLY
84
B
GLY
61
B
ALA
85
B
ALA
62
B
GLN
74
B
GLN
51
B
THR
81
B
THR
58
B
MLY
64
B
MLY
41
B
ASN
69
B
ASN
46
B
LEU
93
B
LEU
70
B
HIS
96
B
HIS
73
B
ASP
99
B
ASP
76
B
THR
102
B
THR
79
B
GLU
133
B
GLU
110
B
ASP
142
B
ASP
119
B
ILE
154
B
ILE
131
B
PHE
160
B
PHE
137
B
LEU
168
B
LEU
145
B
ASP
171
B
ASP
148
B
ILE
178
B
ILE
155
B
PRO
181
B
PRO
158
BINDING SITE FOR RESIDUE SO4 A 301
A
SO4
301
Software
4
BINDING SITE FOR RESIDUE SO4 B 301
B
SO4
301
Software
3
A
SER
114
A
SER
91
4
1_555
A
LEU
115
A
LEU
92
4
1_555
A
SER
116
A
SER
93
4
1_555
A
HOH
433
E
HOH
4
1_555
B
GLN
61
B
GLN
38
3
1_555
B
MLY
64
B
MLY
41
3
1_555
B
MLY
79
B
MLY
56
3
1_555
91
P 41 2 2