0.011320 0.006535 0.000000 0.000000 0.013071 0.000000 0.000000 0.000000 0.005627 0.00000 0.00000 0.00000 van den Berg, B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 88.343 88.343 177.706 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-glucopyranose D-saccharide, beta linking C16 H34 O5 306.438 (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C22 H42 O11 482.562 DECYL-BETA-D-MALTOPYRANOSIDE DECYLMALTOSIDE D-saccharide C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 287 41044 41052 10.1074/jbc.M112.408518 23066028 Structural basis for outer membrane sugar uptake in pseudomonads. 2012 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2012-06-19 ADSC QUANTUM 270 SI(111) SINGLE WAVELENGTH M x-ray 1 0.97 1.0 X6A NSLS 0.97 SYNCHROTRON NSLS BEAMLINE X6A 49054.418 Porin B unp residues 27-447 L246(MSE), L248(MSE) 1 man polymer 180.156 beta-D-glucopyranose 1 man non-polymer 306.438 (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE 8 syn non-polymer 482.562 DECYL-BETA-D-MALTOPYRANOSIDE 4 man non-polymer 94.971 PHOSPHATE ION 1 syn non-polymer 18.015 water 47 nat water no yes ANVRLQHHHHHHHLEAEAFSSESKW(MSE)TGDWGGTRTELLDKGYDFTLDYVGEVAGNLHGGYNDDKTARYSDQFALGA HLDLQKILGWHDAEFKLAITERSGRNLSNDRISDPRAGQFSSVQEVWGRGQTWRLTQ(MSE)WIKQKYFDGALDVKFGRF GEGEDFNSFPCDFQNLAFCGSQVGNWVGGIWYNWPVSQWALRVKYNITPAFFVQVGAFEQNPSNLETGNGFKLSGSGTKG AI(MSE)P(MSE)EAVWSPKVNGLPGEYRLGYYYSTAKADDVYDDVNGNPQALTGEAFKSHSSKHGWWVVAQQQVTAHGG DVNRGLSLFANFTVHDKATNVVDNYQQVGLVYKGAFDARPKDDIGFGVARIHVNDDVKKRAELLNAQSGINDYDNPGFVP LQRTEYNAELYYGFHVTNWLTVRPNLQYIKSPGGVDEVDNALVAGLKIQSSF ANVRLQHHHHHHHLEAEAFSSESKWMTGDWGGTRTELLDKGYDFTLDYVGEVAGNLHGGYNDDKTARYSDQFALGAHLDL QKILGWHDAEFKLAITERSGRNLSNDRISDPRAGQFSSVQEVWGRGQTWRLTQMWIKQKYFDGALDVKFGRFGEGEDFNS FPCDFQNLAFCGSQVGNWVGGIWYNWPVSQWALRVKYNITPAFFVQVGAFEQNPSNLETGNGFKLSGSGTKGAIMPMEAV WSPKVNGLPGEYRLGYYYSTAKADDVYDDVNGNPQALTGEAFKSHSSKHGWWVVAQQQVTAHGGDVNRGLSLFANFTVHD KATNVVDNYQQVGLVYKGAFDARPKDDIGFGVARIHVNDDVKKRAELLNAQSGINDYDNPGFVPLQRTEYNAELYYGFHV TNWLTVRPNLQYIKSPGGVDEVDNALVAGLKIQSSF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Pseudomonas putida F1 sample PPUBIRD1_1069 931281 Pseudomonas putida 469008 Escherichia coli BL21(DE3) 1 4.08 69.86 8.5 50 mM Tris-HCl, 0.2 M Sodium-phosphate, 10% PEG 4000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 audit_author software chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_ref_seq_dif struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Database references Database references Refinement description Structure summary Data collection Database references Derived calculations Structure summary 1 0 2012-10-24 1 1 2012-11-07 1 2 2013-01-02 1 3 2017-11-15 1 4 2020-07-29 _audit_author.name _software.name _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details DGlcpb b-D-glucopyranose b-D-Glcp Glc RCSB Y RCSB 2012-08-02 REL REL BGC beta-D-glucopyranose C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE DMU DECYL-BETA-D-MALTOPYRANOSIDE PO4 PHOSPHATE ION HOH water BGC 500 2 BGC BGC 501 A C8E 1 3 C8E C8E 502 A C8E 2 3 C8E C8E 503 A C8E 3 3 C8E C8E 504 A C8E 4 3 C8E C8E 505 A C8E 5 3 C8E C8E 506 A C8E 7 3 C8E C8E 507 A C8E 8 3 C8E C8E 508 A C8E 9 3 C8E C8E 509 A DMU 1 4 DMU DMU 510 A DMU 2 4 DMU DMU 511 A DMU 3 4 DMU DMU 512 A DMU 4 4 DMU DMU 513 A PO4 1 5 PO4 PO4 514 A HOH 1 6 HOH HOH 601 A HOH 2 6 HOH HOH 602 A HOH 3 6 HOH HOH 603 A HOH 4 6 HOH HOH 604 A HOH 5 6 HOH HOH 605 A HOH 6 6 HOH HOH 606 A HOH 7 6 HOH HOH 607 A HOH 8 6 HOH HOH 608 A HOH 9 6 HOH HOH 609 A HOH 10 6 HOH HOH 610 A HOH 11 6 HOH HOH 611 A HOH 12 6 HOH HOH 612 A HOH 13 6 HOH HOH 613 A HOH 14 6 HOH HOH 614 A HOH 15 6 HOH HOH 615 A HOH 16 6 HOH HOH 616 A HOH 17 6 HOH HOH 617 A HOH 18 6 HOH HOH 618 A HOH 19 6 HOH HOH 619 A HOH 20 6 HOH HOH 620 A HOH 21 6 HOH HOH 621 A HOH 22 6 HOH HOH 622 A HOH 23 6 HOH HOH 623 A HOH 24 6 HOH HOH 624 A HOH 25 6 HOH HOH 625 A HOH 26 6 HOH HOH 626 A HOH 27 6 HOH HOH 627 A HOH 28 6 HOH HOH 628 A HOH 29 6 HOH HOH 629 A HOH 30 6 HOH HOH 630 A HOH 31 6 HOH HOH 631 A HOH 32 6 HOH HOH 632 A HOH 33 6 HOH HOH 633 A HOH 34 6 HOH HOH 634 A HOH 35 6 HOH HOH 635 A HOH 36 6 HOH HOH 636 A HOH 37 6 HOH HOH 637 A HOH 38 6 HOH HOH 638 A HOH 39 6 HOH HOH 639 A HOH 40 6 HOH HOH 640 A HOH 41 6 HOH HOH 641 A HOH 42 6 HOH HOH 642 A HOH 43 6 HOH HOH 643 A HOH 44 6 HOH HOH 644 A HOH 45 6 HOH HOH 645 A HOH 46 6 HOH HOH 646 A HOH 47 6 HOH HOH 647 A n 1 -14 A n 2 -13 A n 3 -12 A n 4 -11 A n 5 -10 A n 6 -9 A n 7 -8 A n 8 -7 A n 9 -6 A n 10 -5 A n 11 -4 A n 12 -3 A n 13 -2 A n 14 -1 A n 15 0 A n 16 1 A GLU 2 n 17 GLU 2 A ALA 3 n 18 ALA 3 A PHE 4 n 19 PHE 4 A SER 5 n 20 SER 5 A SER 6 n 21 SER 6 A GLU 7 n 22 GLU 7 A SER 8 n 23 SER 8 A LYS 9 n 24 LYS 9 A TRP 10 n 25 TRP 10 A MSE 11 n 26 MSE 11 A THR 12 n 27 THR 12 A GLY 13 n 28 GLY 13 A ASP 14 n 29 ASP 14 A TRP 15 n 30 TRP 15 A GLY 16 n 31 GLY 16 A GLY 17 n 32 GLY 17 A THR 18 n 33 THR 18 A ARG 19 n 34 ARG 19 A THR 20 n 35 THR 20 A GLU 21 n 36 GLU 21 A LEU 22 n 37 LEU 22 A LEU 23 n 38 LEU 23 A ASP 24 n 39 ASP 24 A LYS 25 n 40 LYS 25 A GLY 26 n 41 GLY 26 A TYR 27 n 42 TYR 27 A ASP 28 n 43 ASP 28 A PHE 29 n 44 PHE 29 A THR 30 n 45 THR 30 A LEU 31 n 46 LEU 31 A ASP 32 n 47 ASP 32 A TYR 33 n 48 TYR 33 A VAL 34 n 49 VAL 34 A GLY 35 n 50 GLY 35 A GLU 36 n 51 GLU 36 A VAL 37 n 52 VAL 37 A ALA 38 n 53 ALA 38 A GLY 39 n 54 GLY 39 A ASN 40 n 55 ASN 40 A LEU 41 n 56 LEU 41 A HIS 42 n 57 HIS 42 A GLY 43 n 58 GLY 43 A GLY 44 n 59 GLY 44 A TYR 45 n 60 TYR 45 A ASN 46 n 61 ASN 46 A ASP 47 n 62 ASP 47 A ASP 48 n 63 ASP 48 A LYS 49 n 64 LYS 49 A THR 50 n 65 THR 50 A ALA 51 n 66 ALA 51 A ARG 52 n 67 ARG 52 A TYR 53 n 68 TYR 53 A SER 54 n 69 SER 54 A ASP 55 n 70 ASP 55 A GLN 56 n 71 GLN 56 A PHE 57 n 72 PHE 57 A ALA 58 n 73 ALA 58 A LEU 59 n 74 LEU 59 A GLY 60 n 75 GLY 60 A ALA 61 n 76 ALA 61 A HIS 62 n 77 HIS 62 A LEU 63 n 78 LEU 63 A ASP 64 n 79 ASP 64 A LEU 65 n 80 LEU 65 A GLN 66 n 81 GLN 66 A LYS 67 n 82 LYS 67 A ILE 68 n 83 ILE 68 A LEU 69 n 84 LEU 69 A GLY 70 n 85 GLY 70 A TRP 71 n 86 TRP 71 A HIS 72 n 87 HIS 72 A ASP 73 n 88 ASP 73 A ALA 74 n 89 ALA 74 A GLU 75 n 90 GLU 75 A PHE 76 n 91 PHE 76 A LYS 77 n 92 LYS 77 A LEU 78 n 93 LEU 78 A ALA 79 n 94 ALA 79 A ILE 80 n 95 ILE 80 A THR 81 n 96 THR 81 A GLU 82 n 97 GLU 82 A ARG 83 n 98 ARG 83 A SER 84 n 99 SER 84 A GLY 85 n 100 GLY 85 A ARG 86 n 101 ARG 86 A ASN 87 n 102 ASN 87 A LEU 88 n 103 LEU 88 A SER 89 n 104 SER 89 A ASN 90 n 105 ASN 90 A ASP 91 n 106 ASP 91 A ARG 92 n 107 ARG 92 A ILE 93 n 108 ILE 93 A SER 94 n 109 SER 94 A ASP 95 n 110 ASP 95 A PRO 96 n 111 PRO 96 A ARG 97 n 112 ARG 97 A ALA 98 n 113 ALA 98 A GLY 99 n 114 GLY 99 A GLN 100 n 115 GLN 100 A PHE 101 n 116 PHE 101 A SER 102 n 117 SER 102 A SER 103 n 118 SER 103 A VAL 104 n 119 VAL 104 A GLN 105 n 120 GLN 105 A GLU 106 n 121 GLU 106 A VAL 107 n 122 VAL 107 A TRP 108 n 123 TRP 108 A GLY 109 n 124 GLY 109 A ARG 110 n 125 ARG 110 A GLY 111 n 126 GLY 111 A GLN 112 n 127 GLN 112 A THR 113 n 128 THR 113 A TRP 114 n 129 TRP 114 A ARG 115 n 130 ARG 115 A LEU 116 n 131 LEU 116 A THR 117 n 132 THR 117 A GLN 118 n 133 GLN 118 A MSE 119 n 134 MSE 119 A TRP 120 n 135 TRP 120 A ILE 121 n 136 ILE 121 A LYS 122 n 137 LYS 122 A GLN 123 n 138 GLN 123 A LYS 124 n 139 LYS 124 A TYR 125 n 140 TYR 125 A PHE 126 n 141 PHE 126 A ASP 127 n 142 ASP 127 A GLY 128 n 143 GLY 128 A ALA 129 n 144 ALA 129 A LEU 130 n 145 LEU 130 A ASP 131 n 146 ASP 131 A VAL 132 n 147 VAL 132 A LYS 133 n 148 LYS 133 A PHE 134 n 149 PHE 134 A GLY 135 n 150 GLY 135 A ARG 136 n 151 ARG 136 A PHE 137 n 152 PHE 137 A GLY 138 n 153 GLY 138 A GLU 139 n 154 GLU 139 A GLY 140 n 155 GLY 140 A GLU 141 n 156 GLU 141 A ASP 142 n 157 ASP 142 A PHE 143 n 158 PHE 143 A ASN 144 n 159 ASN 144 A SER 145 n 160 SER 145 A PHE 146 n 161 PHE 146 A PRO 147 n 162 PRO 147 A CYS 148 n 163 CYS 148 A ASP 149 n 164 ASP 149 A PHE 150 n 165 PHE 150 A GLN 151 n 166 GLN 151 A ASN 152 n 167 ASN 152 A LEU 153 n 168 LEU 153 A ALA 154 n 169 ALA 154 A PHE 155 n 170 PHE 155 A CYS 156 n 171 CYS 156 A GLY 157 n 172 GLY 157 A SER 158 n 173 SER 158 A GLN 159 n 174 GLN 159 A VAL 160 n 175 VAL 160 A GLY 161 n 176 GLY 161 A ASN 162 n 177 ASN 162 A TRP 163 n 178 TRP 163 A VAL 164 n 179 VAL 164 A GLY 165 n 180 GLY 165 A GLY 166 n 181 GLY 166 A ILE 167 n 182 ILE 167 A TRP 168 n 183 TRP 168 A TYR 169 n 184 TYR 169 A ASN 170 n 185 ASN 170 A TRP 171 n 186 TRP 171 A PRO 172 n 187 PRO 172 A VAL 173 n 188 VAL 173 A SER 174 n 189 SER 174 A GLN 175 n 190 GLN 175 A TRP 176 n 191 TRP 176 A ALA 177 n 192 ALA 177 A LEU 178 n 193 LEU 178 A ARG 179 n 194 ARG 179 A VAL 180 n 195 VAL 180 A LYS 181 n 196 LYS 181 A TYR 182 n 197 TYR 182 A ASN 183 n 198 ASN 183 A ILE 184 n 199 ILE 184 A THR 185 n 200 THR 185 A PRO 186 n 201 PRO 186 A ALA 187 n 202 ALA 187 A PHE 188 n 203 PHE 188 A PHE 189 n 204 PHE 189 A VAL 190 n 205 VAL 190 A GLN 191 n 206 GLN 191 A VAL 192 n 207 VAL 192 A GLY 193 n 208 GLY 193 A ALA 194 n 209 ALA 194 A PHE 195 n 210 PHE 195 A GLU 196 n 211 GLU 196 A GLN 197 n 212 GLN 197 A ASN 198 n 213 ASN 198 A PRO 199 n 214 PRO 199 A SER 200 n 215 SER 200 A ASN 201 n 216 ASN 201 A LEU 202 n 217 LEU 202 A GLU 203 n 218 GLU 203 A THR 204 n 219 THR 204 A GLY 205 n 220 GLY 205 A ASN 206 n 221 ASN 206 A GLY 207 n 222 GLY 207 A PHE 208 n 223 PHE 208 A LYS 209 n 224 LYS 209 A LEU 210 n 225 LEU 210 A SER 211 n 226 SER 211 A GLY 212 n 227 GLY 212 A SER 213 n 228 SER 213 A GLY 214 n 229 GLY 214 A THR 215 n 230 THR 215 A LYS 216 n 231 LYS 216 A GLY 217 n 232 GLY 217 A ALA 218 n 233 ALA 218 A ILE 219 n 234 ILE 219 A MSE 220 n 235 MSE 220 A PRO 221 n 236 PRO 221 A MSE 222 n 237 MSE 222 A GLU 223 n 238 GLU 223 A ALA 224 n 239 ALA 224 A VAL 225 n 240 VAL 225 A TRP 226 n 241 TRP 226 A SER 227 n 242 SER 227 A PRO 228 n 243 PRO 228 A LYS 229 n 244 LYS 229 A VAL 230 n 245 VAL 230 A ASN 231 n 246 ASN 231 A GLY 232 n 247 GLY 232 A LEU 233 n 248 LEU 233 A PRO 234 n 249 PRO 234 A GLY 235 n 250 GLY 235 A GLU 236 n 251 GLU 236 A TYR 237 n 252 TYR 237 A ARG 238 n 253 ARG 238 A LEU 239 n 254 LEU 239 A GLY 240 n 255 GLY 240 A TYR 241 n 256 TYR 241 A TYR 242 n 257 TYR 242 A TYR 243 n 258 TYR 243 A SER 244 n 259 SER 244 A THR 245 n 260 THR 245 A ALA 246 n 261 ALA 246 A LYS 247 n 262 LYS 247 A ALA 248 n 263 ALA 248 A ASP 249 n 264 ASP 249 A ASP 250 n 265 ASP 250 A VAL 251 n 266 VAL 251 A TYR 252 n 267 TYR 252 A ASP 253 n 268 ASP 253 A ASP 254 n 269 ASP 254 A VAL 255 n 270 VAL 255 A ASN 256 n 271 ASN 256 A GLY 257 n 272 GLY 257 A ASN 258 n 273 ASN 258 A PRO 259 n 274 PRO 259 A GLN 260 n 275 GLN 260 A ALA 261 n 276 ALA 261 A LEU 262 n 277 LEU 262 A THR 263 n 278 THR 263 A GLY 264 n 279 GLY 264 A GLU 265 n 280 GLU 265 A ALA 266 n 281 ALA 266 A PHE 267 n 282 PHE 267 A LYS 268 n 283 LYS 268 A SER 269 n 284 SER 269 A HIS 270 n 285 HIS 270 A SER 271 n 286 SER 271 A SER 272 n 287 SER 272 A LYS 273 n 288 LYS 273 A HIS 274 n 289 HIS 274 A GLY 275 n 290 GLY 275 A TRP 276 n 291 TRP 276 A TRP 277 n 292 TRP 277 A VAL 278 n 293 VAL 278 A VAL 279 n 294 VAL 279 A ALA 280 n 295 ALA 280 A GLN 281 n 296 GLN 281 A GLN 282 n 297 GLN 282 A GLN 283 n 298 GLN 283 A VAL 284 n 299 VAL 284 A THR 285 n 300 THR 285 A ALA 286 n 301 ALA 286 A HIS 287 n 302 HIS 287 A GLY 288 n 303 GLY 288 A GLY 289 n 304 GLY 289 A ASP 290 n 305 ASP 290 A VAL 291 n 306 VAL 291 A ASN 292 n 307 ASN 292 A ARG 293 n 308 ARG 293 A GLY 294 n 309 GLY 294 A LEU 295 n 310 LEU 295 A SER 296 n 311 SER 296 A LEU 297 n 312 LEU 297 A PHE 298 n 313 PHE 298 A ALA 299 n 314 ALA 299 A ASN 300 n 315 ASN 300 A PHE 301 n 316 PHE 301 A THR 302 n 317 THR 302 A VAL 303 n 318 VAL 303 A HIS 304 n 319 HIS 304 A ASP 305 n 320 ASP 305 A LYS 306 n 321 LYS 306 A ALA 307 n 322 ALA 307 A THR 308 n 323 THR 308 A ASN 309 n 324 ASN 309 A VAL 310 n 325 VAL 310 A VAL 311 n 326 VAL 311 A ASP 312 n 327 ASP 312 A ASN 313 n 328 ASN 313 A TYR 314 n 329 TYR 314 A GLN 315 n 330 GLN 315 A GLN 316 n 331 GLN 316 A VAL 317 n 332 VAL 317 A GLY 318 n 333 GLY 318 A LEU 319 n 334 LEU 319 A VAL 320 n 335 VAL 320 A TYR 321 n 336 TYR 321 A LYS 322 n 337 LYS 322 A GLY 323 n 338 GLY 323 A ALA 324 n 339 ALA 324 A PHE 325 n 340 PHE 325 A ASP 326 n 341 ASP 326 A ALA 327 n 342 ALA 327 A ARG 328 n 343 ARG 328 A PRO 329 n 344 PRO 329 A LYS 330 n 345 LYS 330 A ASP 331 n 346 ASP 331 A ASP 332 n 347 ASP 332 A ILE 333 n 348 ILE 333 A GLY 334 n 349 GLY 334 A PHE 335 n 350 PHE 335 A GLY 336 n 351 GLY 336 A VAL 337 n 352 VAL 337 A ALA 338 n 353 ALA 338 A ARG 339 n 354 ARG 339 A ILE 340 n 355 ILE 340 A HIS 341 n 356 HIS 341 A VAL 342 n 357 VAL 342 A ASN 343 n 358 ASN 343 A ASP 344 n 359 ASP 344 A ASP 345 n 360 ASP 345 A VAL 346 n 361 VAL 346 A LYS 347 n 362 LYS 347 A LYS 348 n 363 LYS 348 A ARG 349 n 364 ARG 349 A ALA 350 n 365 ALA 350 A GLU 351 n 366 GLU 351 A LEU 352 n 367 LEU 352 A LEU 353 n 368 LEU 353 A ASN 354 n 369 ASN 354 A ALA 355 n 370 ALA 355 A GLN 356 n 371 GLN 356 A SER 357 n 372 SER 357 A GLY 358 n 373 GLY 358 A ILE 359 n 374 ILE 359 A ASN 360 n 375 ASN 360 A ASP 361 n 376 ASP 361 A TYR 362 n 377 TYR 362 A ASP 363 n 378 ASP 363 A ASN 364 n 379 ASN 364 A PRO 365 n 380 PRO 365 A GLY 366 n 381 GLY 366 A PHE 367 n 382 PHE 367 A VAL 368 n 383 VAL 368 A PRO 369 n 384 PRO 369 A LEU 370 n 385 LEU 370 A GLN 371 n 386 GLN 371 A ARG 372 n 387 ARG 372 A THR 373 n 388 THR 373 A GLU 374 n 389 GLU 374 A TYR 375 n 390 TYR 375 A ASN 376 n 391 ASN 376 A ALA 377 n 392 ALA 377 A GLU 378 n 393 GLU 378 A LEU 379 n 394 LEU 379 A TYR 380 n 395 TYR 380 A TYR 381 n 396 TYR 381 A GLY 382 n 397 GLY 382 A PHE 383 n 398 PHE 383 A HIS 384 n 399 HIS 384 A VAL 385 n 400 VAL 385 A THR 386 n 401 THR 386 A ASN 387 n 402 ASN 387 A TRP 388 n 403 TRP 388 A LEU 389 n 404 LEU 389 A THR 390 n 405 THR 390 A VAL 391 n 406 VAL 391 A ARG 392 n 407 ARG 392 A PRO 393 n 408 PRO 393 A ASN 394 n 409 ASN 394 A LEU 395 n 410 LEU 395 A GLN 396 n 411 GLN 396 A TYR 397 n 412 TYR 397 A ILE 398 n 413 ILE 398 A LYS 399 n 414 LYS 399 A SER 400 n 415 SER 400 A PRO 401 n 416 PRO 401 A GLY 402 n 417 GLY 402 A GLY 403 n 418 GLY 403 A VAL 404 n 419 VAL 404 A ASP 405 n 420 ASP 405 A GLU 406 n 421 GLU 406 A VAL 407 n 422 VAL 407 A ASP 408 n 423 ASP 408 A ASN 409 n 424 ASN 409 A ALA 410 n 425 ALA 410 A LEU 411 n 426 LEU 411 A VAL 412 n 427 VAL 412 A ALA 413 n 428 ALA 413 A GLY 414 n 429 GLY 414 A LEU 415 n 430 LEU 415 A LYS 416 n 431 LYS 416 A ILE 417 n 432 ILE 417 A GLN 418 n 433 GLN 418 A SER 419 n 434 SER 419 A SER 420 n 435 SER 420 A PHE 421 n 436 PHE 421 A 1.0236 0.2289 0.2920 1.2216 0.4445 1.0723 0.0469 -0.0425 -0.1072 0.0209 -0.0090 0.0342 0.0487 -0.0782 -0.0428 0.1358 0.0213 -0.0144 0.3714 0.0034 0.2412 refined 25.3753 40.1975 66.2620 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 all author_and_software_defined_assembly PISA 1 monomeric A MSE 11 SELENOMETHIONINE A MSE 26 MET A MSE 119 SELENOMETHIONINE A MSE 134 MET A MSE 220 SELENOMETHIONINE A MSE 235 MET A MSE 222 SELENOMETHIONINE A MSE 237 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 230 A N VAL 245 A O LEU 233 A O LEU 248 A N ARG 238 A N ARG 253 A O VAL 279 A O VAL 294 A N GLN 282 A N GLN 297 A O LEU 297 A O LEU 312 A N GLY 294 A N GLY 309 A O LYS 322 A O LYS 337 A N VAL 317 A N VAL 332 A O VAL 337 A O VAL 352 A N ASP 332 A N ASP 347 A O GLY 382 A O GLY 397 A N PHE 383 A N PHE 398 A O VAL 391 A O VAL 406 A N ARG 392 A N ARG 407 A O LYS 416 A O LYS 431 A O SER 419 A O SER 434 A N TYR 33 A N TYR 48 A N ALA 38 A N ALA 53 A O ARG 52 A O ARG 67 A N LEU 63 A N LEU 78 A O PHE 76 A O PHE 91 A N ALA 79 A N ALA 94 A O GLN 118 A O GLN 133 A N GLN 123 A N GLN 138 A O VAL 132 A O VAL 147 A N ASP 131 A N ASP 146 A O LYS 181 A O LYS 196 A N TRP 176 A N TRP 191 A O GLU 196 A O GLU 211 A N PHE 189 A N PHE 204 A O VAL 225 A O VAL 240 A N TRP 226 A N TRP 241 A O TYR 237 A O TYR 252 A N ALA 248 A N ALA 263 A O HIS 270 A O HIS 285 1 A CG GLU 2 A CG GLU 17 1 Y 1 A CD GLU 2 A CD GLU 17 1 Y 1 A OE1 GLU 2 A OE1 GLU 17 1 Y 1 A OE2 GLU 2 A OE2 GLU 17 1 Y 1 A CD LYS 25 A CD LYS 40 1 Y 1 A CE LYS 25 A CE LYS 40 1 Y 1 A NZ LYS 25 A NZ LYS 40 1 Y 1 A CE LYS 247 A CE LYS 262 1 Y 1 A NZ LYS 247 A NZ LYS 262 1 Y 1 A CE LYS 322 A CE LYS 337 1 Y 1 A NZ LYS 322 A NZ LYS 337 1 Y 1 A CD LYS 348 A CD LYS 363 1 Y 1 A CE LYS 348 A CE LYS 363 1 Y 1 A NZ LYS 348 A NZ LYS 363 1 Y 1 A C13 C8E 502 C C13 C8E 1 1 N 1 A C14 C8E 502 C C14 C8E 1 1 N 1 A O15 C8E 502 C O15 C8E 1 1 N 1 A C16 C8E 502 C C16 C8E 1 1 N 1 A C17 C8E 502 C C17 C8E 1 1 N 1 A O18 C8E 502 C O18 C8E 1 1 N 1 A C19 C8E 502 C C19 C8E 1 1 N 1 A C20 C8E 502 C C20 C8E 1 1 N 1 A O21 C8E 502 C O21 C8E 1 1 N 1 A C1 C8E 504 E C1 C8E 1 1 N 1 A C2 C8E 504 E C2 C8E 1 1 N 1 A C3 C8E 504 E C3 C8E 1 1 N 1 A C4 C8E 504 E C4 C8E 1 1 N 1 A C5 C8E 504 E C5 C8E 1 1 N 1 A C6 C8E 504 E C6 C8E 1 1 N 1 A C7 C8E 504 E C7 C8E 1 1 N 1 A C8 C8E 504 E C8 C8E 1 1 N 1 A O9 C8E 504 E O9 C8E 1 1 N 1 A C1 C8E 505 F C1 C8E 1 1 N 1 A C2 C8E 505 F C2 C8E 1 1 N 1 A C3 C8E 505 F C3 C8E 1 1 N 1 A C4 C8E 505 F C4 C8E 1 1 N 1 A C5 C8E 505 F C5 C8E 1 1 N 1 A C6 C8E 505 F C6 C8E 1 1 N 1 A C13 C8E 506 G C13 C8E 1 1 N 1 A C14 C8E 506 G C14 C8E 1 1 N 1 A O15 C8E 506 G O15 C8E 1 1 N 1 A C16 C8E 506 G C16 C8E 1 1 N 1 A C17 C8E 506 G C17 C8E 1 1 N 1 A O18 C8E 506 G O18 C8E 1 1 N 1 A C19 C8E 506 G C19 C8E 1 1 N 1 A C20 C8E 506 G C20 C8E 1 1 N 1 A O21 C8E 506 G O21 C8E 1 1 N 1 A C11 C8E 507 H C11 C8E 1 1 N 1 A O12 C8E 507 H O12 C8E 1 1 N 1 A C13 C8E 507 H C13 C8E 1 1 N 1 A C14 C8E 507 H C14 C8E 1 1 N 1 A O15 C8E 507 H O15 C8E 1 1 N 1 A C16 C8E 507 H C16 C8E 1 1 N 1 A C17 C8E 507 H C17 C8E 1 1 N 1 A O18 C8E 507 H O18 C8E 1 1 N 1 A C19 C8E 507 H C19 C8E 1 1 N 1 A C20 C8E 507 H C20 C8E 1 1 N 1 A O21 C8E 507 H O21 C8E 1 1 N 1 A C1 C8E 508 I C1 C8E 1 1 N 1 A O15 C8E 508 I O15 C8E 1 1 N 1 A C16 C8E 508 I C16 C8E 1 1 N 1 A C17 C8E 508 I C17 C8E 1 1 N 1 A O18 C8E 508 I O18 C8E 1 1 N 1 A C19 C8E 508 I C19 C8E 1 1 N 1 A C20 C8E 508 I C20 C8E 1 1 N 1 A O21 C8E 508 I O21 C8E 1 1 N 1 A C1 C8E 509 J C1 C8E 1 1 N 1 A C2 C8E 509 J C2 C8E 1 1 N 1 A C3 C8E 509 J C3 C8E 1 1 N 1 A C4 C8E 509 J C4 C8E 1 1 N 1 A C5 C8E 509 J C5 C8E 1 1 N 1 A C6 C8E 509 J C6 C8E 1 1 N 1 A C7 C8E 509 J C7 C8E 1 1 N 1 A C8 C8E 509 J C8 C8E 1 1 N 1 A O9 C8E 509 J O9 C8E 1 1 N 1 A C10 C8E 509 J C10 C8E 1 1 N 1 A C11 C8E 509 J C11 C8E 1 1 N 1 A O12 C8E 509 J O12 C8E 1 1 N 1 A C37 DMU 510 K C37 DMU 1 1 N 1 A C40 DMU 510 K C40 DMU 1 1 N 1 A C43 DMU 510 K C43 DMU 1 1 N 1 A C40 DMU 511 L C40 DMU 1 1 N 1 A C43 DMU 511 L C43 DMU 1 1 N 1 A C37 DMU 512 M C37 DMU 1 1 N 1 A C40 DMU 512 M C40 DMU 1 1 N 1 A C43 DMU 512 M C43 DMU 1 1 N 1 A C34 DMU 513 N C34 DMU 1 1 N 1 A C37 DMU 513 N C37 DMU 1 1 N 1 A C40 DMU 513 N C40 DMU 1 1 N 1 A C43 DMU 513 N C43 DMU 1 1 N 1 A ALA -14 A ALA 1 1 Y 1 A ASN -13 A ASN 2 1 Y 1 A VAL -12 A VAL 3 1 Y 1 A ARG -11 A ARG 4 1 Y 1 A LEU -10 A LEU 5 1 Y 1 A GLN -9 A GLN 6 1 Y 1 A HIS -8 A HIS 7 1 Y 1 A HIS -7 A HIS 8 1 Y 1 A HIS -6 A HIS 9 1 Y 1 A HIS -5 A HIS 10 1 Y 1 A HIS -4 A HIS 11 1 Y 1 A HIS -3 A HIS 12 1 Y 1 A HIS -2 A HIS 13 1 Y 1 A LEU -1 A LEU 14 1 Y 1 A GLU 0 A GLU 15 1 Y 1 A ALA 1 A ALA 16 1 Y 1 A A O O2 GLU BGC 106 501 1.99 1 A A OH OH TYR TYR 33 53 2.02 1 A A NH2 O ARG ASN 115 201 2.19 1 A ALA 3 140.73 -45.53 1 A PHE 4 -171.49 27.70 1 A ASP 73 7.33 82.42 1 A ARG 92 -132.97 -44.20 1 A ALA 98 -162.60 79.75 1 A PRO 147 -66.81 -179.38 1 A TRP 171 -33.80 126.20 1 A TYR 252 -145.12 -49.37 1 A ASN 343 -34.14 115.82 1 A ARG 372 -120.30 -80.58 1 A SER 400 50.87 75.29 0.239 0.188 0.193 2.70 19.98 1968 22209 22209 8.860 98.2 0.290 1 0.000 SAD 23.090 0.90 1.11 MLHL FLAT BULK SOLVENT MODEL 2.70 19.98 47 3597 241 0 3309 0.008 3639 1.334 4902 20.672 1510 0.090 467 0.007 614 0.2901 0.2154 2.7703 136 1407 95.00 0.2994 0.2258 2.8450 134 1378 96.00 0.2929 0.2099 2.9285 134 1400 97.00 0.2801 0.2165 3.0227 135 1382 96.00 0.2647 0.2006 3.1303 137 1420 97.00 0.2832 0.2019 3.2552 139 1436 98.00 0.2774 0.2002 3.4026 138 1434 98.00 0.2302 0.1892 3.5810 143 1422 99.00 0.2264 0.1736 3.8040 141 1452 99.00 0.2238 0.1792 4.0953 142 1452 99.00 0.1949 0.1670 4.5032 141 1500 100.00 0.2154 0.1513 5.1451 149 1473 100.00 0.2294 0.1910 6.4459 146 1500 100.00 0.2402 0.2094 19.9768 153 1585 100.00 2.700 50.000 4GEY 22711 -3.000 1 99.9 2.70 2.75 1 100.0 data collection CBASS model building PHENIX refinement PHENIX (phenix.refine: 1.8_1069) data reduction HKL-2000 data scaling HKL-2000 phasing PHENIX Porin B High pH structure of Pseudomonas putida OprB 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N 5 N N 6 N N A ASP 14 A ASP 29 HELX_P A GLY 16 A GLY 31 5 1 3 A GLY 17 A GLY 32 HELX_P A GLY 26 A GLY 41 1 2 10 A LEU 65 A LEU 80 HELX_P A GLY 70 A GLY 85 1 3 6 A ASN 87 A ASN 102 HELX_P A ARG 92 A ARG 107 1 4 6 A GLY 138 A GLY 153 HELX_P A ASP 142 A ASP 157 5 5 5 A ASN 152 A ASN 167 HELX_P A CYS 156 A CYS 171 5 6 5 A GLN 159 A GLN 174 HELX_P A VAL 164 A VAL 179 1 7 6 A ASN 198 A ASN 213 HELX_P A GLU 203 A GLU 218 5 8 6 A PRO 259 A PRO 274 HELX_P A GLY 264 A GLY 279 1 9 6 A ALA 286 A ALA 301 HELX_P A ASP 290 A ASP 305 5 10 5 A ASN 343 A ASN 358 HELX_P A GLY 358 A GLY 373 1 11 16 A SER 400 A SER 415 HELX_P A VAL 404 A VAL 419 5 12 5 disulf 2.029 A CYS 148 A SG CYS 163 1_555 A CYS 156 A SG CYS 171 1_555 covale 1.319 both A TRP 10 A C TRP 25 1_555 A MSE 11 A N MSE 26 1_555 covale 1.329 both A MSE 11 A C MSE 26 1_555 A THR 12 A N THR 27 1_555 covale 1.329 both A GLN 118 A C GLN 133 1_555 A MSE 119 A N MSE 134 1_555 covale 1.323 both A MSE 119 A C MSE 134 1_555 A TRP 120 A N TRP 135 1_555 covale 1.318 both A ILE 219 A C ILE 234 1_555 A MSE 220 A N MSE 235 1_555 covale 1.338 both A MSE 220 A C MSE 235 1_555 A PRO 221 A N PRO 236 1_555 covale 1.334 both A PRO 221 A C PRO 236 1_555 A MSE 222 A N MSE 237 1_555 covale 1.323 both A MSE 222 A C MSE 237 1_555 A GLU 223 A N GLU 238 1_555 TRANSPORT PROTEIN beta-barrel, outer membrane channel, carbohydrate transport, TRANSPORT PROTEIN A TRP 171 A TRP 186 1 A PRO 172 A PRO 187 16.19 E4R6F8_PSEPB UNP 1 27 E4R6F8 AEAFSSESKWMTGDWGGTRTELLDKGYDFTLDYVGEVAGNLHGGYNDDKTARYSDQFALGAHLDLQKILGWHDAEFKLAI TERSGRNLSNDRISDPRAGQFSSVQEVWGRGQTWRLTQMWIKQKYFDGALDVKFGRFGEGEDFNSFPCDFQNLAFCGSQV GNWVGGIWYNWPVSQWALRVKYNITPAFFVQVGAFEQNPSNLETGNGFKLSGSGTKGAILPVEAVWSPKVNGLPGEYRLG YYYSTAKADDVYDDVNGNPQALTGEAFKSHSSKHGWWVVAQQQVTAHGGDVNRGLSLFANFTVHDKATNVVDNYQQVGLV YKGAFDARPKDDIGFGVARIHVNDDVKKRAELLNAQSGINDYDNPGFVPLQRTEYNAELYYGFHVTNWLTVRPNLQYIKS PGGVDEVDNALVAGLKIQSSF 27 447 4GEY 1 421 E4R6F8 A 1 16 436 1 expression tag ALA -14 4GEY A E4R6F8 UNP 1 1 expression tag ASN -13 4GEY A E4R6F8 UNP 2 1 expression tag VAL -12 4GEY A E4R6F8 UNP 3 1 expression tag ARG -11 4GEY A E4R6F8 UNP 4 1 expression tag LEU -10 4GEY A E4R6F8 UNP 5 1 expression tag GLN -9 4GEY A E4R6F8 UNP 6 1 expression tag HIS -8 4GEY A E4R6F8 UNP 7 1 expression tag HIS -7 4GEY A E4R6F8 UNP 8 1 expression tag HIS -6 4GEY A E4R6F8 UNP 9 1 expression tag HIS -5 4GEY A E4R6F8 UNP 10 1 expression tag HIS -4 4GEY A E4R6F8 UNP 11 1 expression tag HIS -3 4GEY A E4R6F8 UNP 12 1 expression tag HIS -2 4GEY A E4R6F8 UNP 13 1 expression tag LEU -1 4GEY A E4R6F8 UNP 14 1 expression tag GLU 0 4GEY A E4R6F8 UNP 15 1 LEU engineered mutation MSE 220 4GEY A E4R6F8 UNP 246 235 1 VAL engineered mutation MSE 222 4GEY A E4R6F8 UNP 248 237 18 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 229 A LYS 244 A VAL 230 A VAL 245 A LEU 233 A LEU 248 A SER 244 A SER 259 A LYS 273 A LYS 288 A GLN 283 A GLN 298 A GLY 294 A GLY 309 A HIS 304 A HIS 319 A VAL 311 A VAL 326 A LYS 322 A LYS 337 A ASP 332 A ASP 347 A VAL 342 A VAL 357 A THR 373 A THR 388 A HIS 384 A HIS 399 A LEU 389 A LEU 404 A LYS 399 A LYS 414 A ALA 410 A ALA 425 A PHE 421 A PHE 436 A TYR 27 A TYR 42 A HIS 42 A HIS 57 A ALA 51 A ALA 66 A ASP 64 A ASP 79 A ALA 74 A ALA 89 A GLY 85 A GLY 100 A TRP 114 A TRP 129 A TYR 125 A TYR 140 A LEU 130 A LEU 145 A PHE 137 A PHE 152 A GLN 175 A GLN 190 A THR 185 A THR 200 A PHE 188 A PHE 203 A GLN 197 A GLN 212 A GLY 217 A GLY 232 A TRP 226 A TRP 241 A LEU 233 A LEU 248 A SER 244 A SER 259 A ALA 248 A ALA 263 A ASP 254 A ASP 269 A PHE 267 A PHE 282 A HIS 270 A HIS 285 152 P 31 2 1