0.018255 0.000000 0.000000 0.000000 0.017179 0.000000 0.000000 0.000000 0.015108 0.00000 0.00000 0.00000 Bensen, D.C. Trzoss, M. Tari, L.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 54.780 58.210 66.190 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C17 H18 Cl N7 S 387.890 (1R,5S,6s)-3-[5-chloro-6-ethyl-2-(pyrimidin-5-ylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-amine non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N C N 124 N O N 125 N C N 126 N O N 127 N C N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N CL Y 305 N C Y 306 N C N 307 N C N 308 N C Y 309 N N Y 310 N C Y 311 N N Y 312 N C Y 313 N C N 314 N N N 315 N C N 316 S C N 317 R C N 318 N N N 319 R C N 320 N C Y 321 N N Y 322 N C N 323 N S Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N N Y 329 N C N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 R C N 353 N O N 354 N C N 355 N O N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N N Y 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C N 403 N O N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing Y 290 N doub Y 291 N sing Y 292 N sing Y 293 N doub Y 294 N doub Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing Y 303 N doub Y 304 N sing Y 305 N sing N 306 N sing N 307 N sing Y 308 N doub N 309 N sing N 310 N sing Y 311 N doub Y 312 N sing Y 313 N sing Y 314 N sing Y 315 N sing Y 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N doub N 361 N sing N 362 N sing N 363 N sing N 364 N sing Y 365 N doub Y 366 N sing Y 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N sing Y 374 N doub N 375 N sing Y 376 N doub N 377 N sing Y 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N doub N 389 N sing N 390 N sing N 391 N sing N 392 N sing Y 393 N doub Y 394 N sing Y 395 N sing N 396 N sing Y 397 N doub N 398 N sing Y 399 N doub N 400 N sing Y 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing UK Bioorg.Med.Chem.Lett. BMCLE8 1127 0960-894X 23 1529 1536 10.1016/j.bmcl.2012.11.032 23352267 Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity. 2013 10.2210/pdb4gfn/pdb pdb_00004gfn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2010-01-28 NOIR-1 SINGLE WAVELENGTH M x-ray 1 1.0 4.2.2 ALS SYNCHROTRON ALS BEAMLINE 4.2.2 23835.613 DNA gyrase subunit B 5.99.1.3 unp residues 18-224 1 man polymer 387.890 (1R,5S,6s)-3-[5-chloro-6-ethyl-2-(pyrimidin-5-ylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-amine 1 syn non-polymer 92.094 GLYCEROL 1 syn non-polymer 18.015 water 219 nat water no no GLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVF TVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEETDRHGTTVHFIPDPEI FTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGLEHHHHHH GLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVF TVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEETDRHGTTVHFIPDPEI FTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEGLEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 700802 / V583 sample EF_0005, gyrB 226185 Enterococcus faecalis 469008 Escherichia coli BL21(DE3) 1 2.21 44.44 VAPOR DIFFUSION, HANGING DROP 5.6 25% (W/V) PEG 1500, 3% (V/V) T-BUTANOL, 20% (W/V) GLYCEROL, 20 MM CITRATE , pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations 1 0 2013-02-13 1 1 2013-02-27 1 2 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-08-03 REL REL SUY (1R,5S,6s)-3-[5-chloro-6-ethyl-2-(pyrimidin-5-ylsulfanyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-6-amine GOL GLYCEROL HOH water SUY 1 2 SUY SUY 301 A GOL 1 3 GOL GOL 302 A HOH 1 4 HOH HOH 401 A HOH 2 4 HOH HOH 402 A HOH 3 4 HOH HOH 403 A HOH 4 4 HOH HOH 404 A HOH 5 4 HOH HOH 405 A HOH 6 4 HOH HOH 406 A HOH 7 4 HOH HOH 407 A HOH 8 4 HOH HOH 408 A HOH 9 4 HOH HOH 409 A HOH 10 4 HOH HOH 410 A HOH 11 4 HOH HOH 411 A HOH 12 4 HOH HOH 412 A HOH 13 4 HOH HOH 413 A HOH 14 4 HOH HOH 414 A HOH 15 4 HOH HOH 415 A HOH 16 4 HOH HOH 416 A HOH 17 4 HOH HOH 417 A HOH 18 4 HOH HOH 418 A HOH 19 4 HOH HOH 419 A HOH 20 4 HOH HOH 420 A HOH 21 4 HOH HOH 421 A HOH 22 4 HOH HOH 422 A HOH 23 4 HOH HOH 423 A HOH 24 4 HOH HOH 424 A HOH 25 4 HOH HOH 425 A HOH 26 4 HOH HOH 426 A HOH 27 4 HOH HOH 427 A HOH 28 4 HOH HOH 428 A HOH 29 4 HOH HOH 429 A HOH 30 4 HOH HOH 430 A HOH 31 4 HOH HOH 431 A HOH 32 4 HOH HOH 432 A HOH 33 4 HOH HOH 433 A HOH 34 4 HOH HOH 434 A HOH 35 4 HOH HOH 435 A HOH 36 4 HOH HOH 436 A HOH 37 4 HOH HOH 437 A HOH 38 4 HOH HOH 438 A HOH 39 4 HOH HOH 439 A HOH 40 4 HOH HOH 440 A HOH 41 4 HOH HOH 441 A HOH 42 4 HOH HOH 442 A HOH 43 4 HOH HOH 443 A HOH 44 4 HOH HOH 444 A HOH 45 4 HOH HOH 445 A HOH 46 4 HOH HOH 446 A HOH 47 4 HOH HOH 447 A HOH 48 4 HOH HOH 448 A HOH 49 4 HOH HOH 449 A HOH 50 4 HOH HOH 450 A HOH 51 4 HOH HOH 451 A HOH 52 4 HOH HOH 452 A HOH 53 4 HOH HOH 453 A HOH 54 4 HOH HOH 454 A HOH 55 4 HOH HOH 455 A HOH 56 4 HOH HOH 456 A HOH 57 4 HOH HOH 457 A HOH 58 4 HOH HOH 458 A HOH 59 4 HOH HOH 459 A HOH 60 4 HOH HOH 460 A HOH 61 4 HOH HOH 461 A HOH 62 4 HOH HOH 462 A HOH 63 4 HOH HOH 463 A HOH 64 4 HOH HOH 464 A HOH 65 4 HOH HOH 465 A HOH 66 4 HOH HOH 466 A HOH 67 4 HOH HOH 467 A HOH 68 4 HOH HOH 468 A HOH 69 4 HOH HOH 469 A HOH 70 4 HOH HOH 470 A HOH 71 4 HOH HOH 471 A HOH 72 4 HOH HOH 472 A HOH 73 4 HOH HOH 473 A HOH 74 4 HOH HOH 474 A HOH 75 4 HOH HOH 475 A HOH 76 4 HOH HOH 476 A HOH 77 4 HOH HOH 477 A HOH 78 4 HOH HOH 478 A HOH 79 4 HOH HOH 479 A HOH 80 4 HOH HOH 480 A HOH 81 4 HOH HOH 481 A HOH 82 4 HOH HOH 482 A HOH 83 4 HOH HOH 483 A HOH 84 4 HOH HOH 484 A HOH 85 4 HOH HOH 485 A HOH 86 4 HOH HOH 486 A HOH 87 4 HOH HOH 487 A HOH 88 4 HOH HOH 488 A HOH 89 4 HOH HOH 489 A HOH 90 4 HOH HOH 490 A HOH 91 4 HOH HOH 491 A HOH 92 4 HOH HOH 492 A HOH 93 4 HOH HOH 493 A HOH 94 4 HOH HOH 494 A HOH 95 4 HOH HOH 495 A HOH 96 4 HOH HOH 496 A HOH 97 4 HOH HOH 497 A HOH 98 4 HOH HOH 498 A HOH 99 4 HOH HOH 499 A HOH 100 4 HOH HOH 500 A HOH 101 4 HOH HOH 501 A HOH 102 4 HOH HOH 502 A HOH 103 4 HOH HOH 503 A HOH 104 4 HOH HOH 504 A HOH 105 4 HOH HOH 505 A HOH 106 4 HOH HOH 506 A HOH 107 4 HOH HOH 507 A HOH 108 4 HOH HOH 508 A HOH 109 4 HOH HOH 509 A HOH 110 4 HOH HOH 510 A HOH 111 4 HOH HOH 511 A HOH 112 4 HOH HOH 512 A HOH 113 4 HOH HOH 513 A HOH 114 4 HOH HOH 514 A HOH 115 4 HOH HOH 515 A HOH 116 4 HOH HOH 516 A HOH 117 4 HOH HOH 517 A HOH 118 4 HOH HOH 518 A HOH 119 4 HOH HOH 519 A HOH 120 4 HOH HOH 520 A HOH 121 4 HOH HOH 521 A HOH 122 4 HOH HOH 522 A HOH 123 4 HOH HOH 523 A HOH 124 4 HOH HOH 524 A HOH 125 4 HOH HOH 525 A HOH 126 4 HOH HOH 526 A HOH 127 4 HOH HOH 527 A HOH 128 4 HOH HOH 528 A HOH 129 4 HOH HOH 529 A HOH 130 4 HOH HOH 530 A HOH 131 4 HOH HOH 531 A HOH 132 4 HOH HOH 532 A HOH 133 4 HOH HOH 533 A HOH 134 4 HOH HOH 534 A HOH 135 4 HOH HOH 535 A HOH 136 4 HOH HOH 536 A HOH 137 4 HOH HOH 537 A HOH 138 4 HOH HOH 538 A HOH 139 4 HOH HOH 539 A HOH 140 4 HOH HOH 540 A HOH 141 4 HOH HOH 541 A HOH 142 4 HOH HOH 542 A HOH 143 4 HOH HOH 543 A HOH 144 4 HOH HOH 544 A HOH 145 4 HOH HOH 545 A HOH 146 4 HOH HOH 546 A HOH 147 4 HOH HOH 547 A HOH 148 4 HOH HOH 548 A HOH 149 4 HOH HOH 549 A HOH 150 4 HOH HOH 550 A HOH 151 4 HOH HOH 551 A HOH 152 4 HOH HOH 552 A HOH 153 4 HOH HOH 553 A HOH 154 4 HOH HOH 554 A HOH 155 4 HOH HOH 555 A HOH 156 4 HOH HOH 556 A HOH 157 4 HOH HOH 557 A HOH 158 4 HOH HOH 558 A HOH 159 4 HOH HOH 559 A HOH 160 4 HOH HOH 560 A HOH 161 4 HOH HOH 561 A HOH 162 4 HOH HOH 562 A HOH 163 4 HOH HOH 563 A HOH 164 4 HOH HOH 564 A HOH 165 4 HOH HOH 565 A HOH 166 4 HOH HOH 566 A HOH 167 4 HOH HOH 567 A HOH 168 4 HOH HOH 568 A HOH 169 4 HOH HOH 569 A HOH 170 4 HOH HOH 570 A HOH 171 4 HOH HOH 571 A HOH 172 4 HOH HOH 572 A HOH 173 4 HOH HOH 573 A HOH 174 4 HOH HOH 574 A HOH 175 4 HOH HOH 575 A HOH 176 4 HOH HOH 576 A HOH 177 4 HOH HOH 577 A HOH 178 4 HOH HOH 578 A HOH 179 4 HOH HOH 579 A HOH 180 4 HOH HOH 580 A HOH 181 4 HOH HOH 581 A HOH 182 4 HOH HOH 582 A HOH 183 4 HOH HOH 583 A HOH 184 4 HOH HOH 584 A HOH 185 4 HOH HOH 585 A HOH 186 4 HOH HOH 586 A HOH 187 4 HOH HOH 587 A HOH 188 4 HOH HOH 588 A HOH 189 4 HOH HOH 589 A HOH 190 4 HOH HOH 590 A HOH 191 4 HOH HOH 591 A HOH 192 4 HOH HOH 592 A HOH 193 4 HOH HOH 593 A HOH 194 4 HOH HOH 594 A HOH 195 4 HOH HOH 595 A HOH 196 4 HOH HOH 596 A HOH 197 4 HOH HOH 597 A HOH 198 4 HOH HOH 598 A HOH 199 4 HOH HOH 599 A HOH 200 4 HOH HOH 600 A HOH 201 4 HOH HOH 601 A HOH 202 4 HOH HOH 602 A HOH 203 4 HOH HOH 603 A HOH 204 4 HOH HOH 604 A HOH 205 4 HOH HOH 605 A HOH 206 4 HOH HOH 606 A HOH 207 4 HOH HOH 607 A HOH 208 4 HOH HOH 608 A HOH 209 4 HOH HOH 609 A HOH 210 4 HOH HOH 610 A HOH 211 4 HOH HOH 611 A HOH 212 4 HOH HOH 612 A HOH 213 4 HOH HOH 613 A HOH 214 4 HOH HOH 614 A HOH 215 4 HOH HOH 615 A HOH 216 4 HOH HOH 616 A HOH 217 4 HOH HOH 617 A HOH 218 4 HOH HOH 618 A HOH 219 4 HOH HOH 619 A GLY 18 n 1 GLY 18 A LEU 19 n 2 LEU 19 A GLU 20 n 3 GLU 20 A ALA 21 n 4 ALA 21 A VAL 22 n 5 VAL 22 A ARG 23 n 6 ARG 23 A LYS 24 n 7 LYS 24 A ARG 25 n 8 ARG 25 A PRO 26 n 9 PRO 26 A GLY 27 n 10 GLY 27 A MET 28 n 11 MET 28 A TYR 29 n 12 TYR 29 A ILE 30 n 13 ILE 30 A GLY 31 n 14 GLY 31 A SER 32 n 15 SER 32 A THR 33 n 16 THR 33 A SER 34 n 17 SER 34 A GLY 35 n 18 GLY 35 A GLU 36 n 19 GLU 36 A GLY 37 n 20 GLY 37 A LEU 38 n 21 LEU 38 A HIS 39 n 22 HIS 39 A HIS 40 n 23 HIS 40 A LEU 41 n 24 LEU 41 A VAL 42 n 25 VAL 42 A TRP 43 n 26 TRP 43 A GLU 44 n 27 GLU 44 A ILE 45 n 28 ILE 45 A VAL 46 n 29 VAL 46 A ASP 47 n 30 ASP 47 A ASN 48 n 31 ASN 48 A SER 49 n 32 SER 49 A ILE 50 n 33 ILE 50 A ASP 51 n 34 ASP 51 A GLU 52 n 35 GLU 52 A ALA 53 n 36 ALA 53 A LEU 54 n 37 LEU 54 A ALA 55 n 38 ALA 55 A GLY 56 n 39 GLY 56 A PHE 57 n 40 PHE 57 A ALA 58 n 41 ALA 58 A LYS 59 n 42 LYS 59 A SER 60 n 43 SER 60 A ILE 61 n 44 ILE 61 A GLN 62 n 45 GLN 62 A VAL 63 n 46 VAL 63 A ILE 64 n 47 ILE 64 A ILE 65 n 48 ILE 65 A GLU 66 n 49 GLU 66 A PRO 67 n 50 PRO 67 A ASP 68 n 51 ASP 68 A ASP 69 n 52 ASP 69 A SER 70 n 53 SER 70 A ILE 71 n 54 ILE 71 A THR 72 n 55 THR 72 A VAL 73 n 56 VAL 73 A ILE 74 n 57 ILE 74 A ASP 75 n 58 ASP 75 A ASP 76 n 59 ASP 76 A GLY 77 n 60 GLY 77 A ARG 78 n 61 ARG 78 A GLY 79 n 62 GLY 79 A ILE 80 n 63 ILE 80 A PRO 81 n 64 PRO 81 A VAL 82 n 65 VAL 82 A GLY 83 n 66 GLY 83 A ILE 84 n 67 ILE 84 A GLN 85 n 68 GLN 85 A ALA 86 n 69 ALA 86 A LYS 87 n 70 LYS 87 A THR 88 n 71 THR 88 A GLY 89 n 72 GLY 89 A ARG 90 n 73 ARG 90 A PRO 91 n 74 PRO 91 A ALA 92 n 75 ALA 92 A VAL 93 n 76 VAL 93 A GLU 94 n 77 GLU 94 A THR 95 n 78 THR 95 A VAL 96 n 79 VAL 96 A PHE 97 n 80 PHE 97 A THR 98 n 81 THR 98 A VAL 99 n 82 VAL 99 A LEU 100 n 83 LEU 100 A HIS 101 n 84 HIS 101 A n 85 102 A n 86 103 A n 87 104 A n 88 105 A n 89 106 A n 90 107 A n 91 108 A n 92 109 A n 93 110 A n 94 111 A n 95 112 A n 96 113 A n 97 114 A n 98 115 A n 99 116 A n 100 117 A n 101 118 A GLY 119 n 102 GLY 119 A VAL 120 n 103 VAL 120 A GLY 121 n 104 GLY 121 A SER 122 n 105 SER 122 A SER 123 n 106 SER 123 A VAL 124 n 107 VAL 124 A VAL 125 n 108 VAL 125 A ASN 126 n 109 ASN 126 A ALA 127 n 110 ALA 127 A LEU 128 n 111 LEU 128 A SER 129 n 112 SER 129 A THR 130 n 113 THR 130 A SER 131 n 114 SER 131 A LEU 132 n 115 LEU 132 A ASP 133 n 116 ASP 133 A VAL 134 n 117 VAL 134 A ARG 135 n 118 ARG 135 A VAL 136 n 119 VAL 136 A TYR 137 n 120 TYR 137 A LYS 138 n 121 LYS 138 A ASP 139 n 122 ASP 139 A GLY 140 n 123 GLY 140 A LYS 141 n 124 LYS 141 A VAL 142 n 125 VAL 142 A TYR 143 n 126 TYR 143 A TYR 144 n 127 TYR 144 A GLN 145 n 128 GLN 145 A GLU 146 n 129 GLU 146 A TYR 147 n 130 TYR 147 A ARG 148 n 131 ARG 148 A ARG 149 n 132 ARG 149 A GLY 150 n 133 GLY 150 A ALA 151 n 134 ALA 151 A VAL 152 n 135 VAL 152 A VAL 153 n 136 VAL 153 A ASP 154 n 137 ASP 154 A ASP 155 n 138 ASP 155 A LEU 156 n 139 LEU 156 A LYS 157 n 140 LYS 157 A VAL 158 n 141 VAL 158 A ILE 159 n 142 ILE 159 A GLU 160 n 143 GLU 160 A GLU 161 n 144 GLU 161 A THR 162 n 145 THR 162 A ASP 163 n 146 ASP 163 A ARG 164 n 147 ARG 164 A HIS 165 n 148 HIS 165 A GLY 166 n 149 GLY 166 A THR 167 n 150 THR 167 A THR 168 n 151 THR 168 A VAL 169 n 152 VAL 169 A HIS 170 n 153 HIS 170 A PHE 171 n 154 PHE 171 A ILE 172 n 155 ILE 172 A PRO 173 n 156 PRO 173 A ASP 174 n 157 ASP 174 A PRO 175 n 158 PRO 175 A GLU 176 n 159 GLU 176 A ILE 177 n 160 ILE 177 A PHE 178 n 161 PHE 178 A THR 179 n 162 THR 179 A GLU 180 n 163 GLU 180 A THR 181 n 164 THR 181 A THR 182 n 165 THR 182 A VAL 183 n 166 VAL 183 A TYR 184 n 167 TYR 184 A ASP 185 n 168 ASP 185 A PHE 186 n 169 PHE 186 A ASP 187 n 170 ASP 187 A LYS 188 n 171 LYS 188 A LEU 189 n 172 LEU 189 A ALA 190 n 173 ALA 190 A THR 191 n 174 THR 191 A ARG 192 n 175 ARG 192 A VAL 193 n 176 VAL 193 A ARG 194 n 177 ARG 194 A GLU 195 n 178 GLU 195 A LEU 196 n 179 LEU 196 A ALA 197 n 180 ALA 197 A PHE 198 n 181 PHE 198 A LEU 199 n 182 LEU 199 A ASN 200 n 183 ASN 200 A ARG 201 n 184 ARG 201 A GLY 202 n 185 GLY 202 A LEU 203 n 186 LEU 203 A HIS 204 n 187 HIS 204 A ILE 205 n 188 ILE 205 A SER 206 n 189 SER 206 A ILE 207 n 190 ILE 207 A GLU 208 n 191 GLU 208 A ASP 209 n 192 ASP 209 A ARG 210 n 193 ARG 210 A ARG 211 n 194 ARG 211 A GLU 212 n 195 GLU 212 A GLY 213 n 196 GLY 213 A GLN 214 n 197 GLN 214 A GLU 215 n 198 GLU 215 A ASP 216 n 199 ASP 216 A LYS 217 n 200 LYS 217 A LYS 218 n 201 LYS 218 A GLU 219 n 202 GLU 219 A TYR 220 n 203 TYR 220 A HIS 221 n 204 HIS 221 A TYR 222 n 205 TYR 222 A GLU 223 n 206 GLU 223 A GLY 224 n 207 GLY 224 A LEU 225 n 208 LEU 225 A GLU 226 n 209 GLU 226 A HIS 227 n 210 HIS 227 A n 211 228 A n 212 229 A n 213 230 A n 214 231 A n 215 232 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ALA 151 A O ALA 134 A N ARG 148 A N ARG 131 A N VAL 142 A N VAL 125 A O ILE 159 A O ILE 142 A O ALA 151 A O ALA 134 A N ARG 148 A N ARG 131 A O TYR 143 A O TYR 126 A N VAL 136 A N VAL 119 A N TYR 137 A N TYR 120 A O GLY 166 A O GLY 149 A O VAL 169 A O VAL 152 A N VAL 73 A N VAL 56 A O ILE 74 A O ILE 57 A N GLN 62 A N GLN 45 A N ILE 65 A N ILE 48 A O GLU 208 A O GLU 191 A N ASP 209 A N ASP 192 A O ASP 216 A O ASP 199 1 A O GLY 31 A O GLY 14 0 Y 1 A O GLY 77 A O GLY 60 0 Y 1 A CA GLY 83 A CA GLY 66 0 Y 1 A CD LYS 87 A CD LYS 70 0 Y 1 A CE LYS 87 A CE LYS 70 0 Y 1 A NZ LYS 87 A NZ LYS 70 0 Y 1 A ALA 102 A ALA 85 1 Y 1 A GLY 103 A GLY 86 1 Y 1 A GLY 104 A GLY 87 1 Y 1 A LYS 105 A LYS 88 1 Y 1 A PHE 106 A PHE 89 1 Y 1 A GLY 107 A GLY 90 1 Y 1 A GLY 108 A GLY 91 1 Y 1 A GLY 109 A GLY 92 1 Y 1 A GLY 110 A GLY 93 1 Y 1 A TYR 111 A TYR 94 1 Y 1 A LYS 112 A LYS 95 1 Y 1 A VAL 113 A VAL 96 1 Y 1 A SER 114 A SER 97 1 Y 1 A GLY 115 A GLY 98 1 Y 1 A GLY 116 A GLY 99 1 Y 1 A LEU 117 A LEU 100 1 Y 1 A HIS 118 A HIS 101 1 Y 1 A HIS 228 A HIS 211 1 Y 1 A HIS 229 A HIS 212 1 Y 1 A HIS 230 A HIS 213 1 Y 1 A HIS 231 A HIS 214 1 Y 1 A HIS 232 A HIS 215 1 Y 1 A A C O GLY GLY 31 31 -0.206 0.016 1.232 1.026 N 1 A ARG 201 -38.86 124.55 1 A GLN 214 -151.57 21.59 24.391 -0.44 0.00 0.00 -0.19 0.00 0.63 0.961 0.932 0.21150 0.16217 0.223 0.16462 1.90 34.17 866 17123 16223 5.1 99.11 2.965 0.089 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.138 0.135 0.80 0.80 1.20 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.90 34.17 219 1775 32 0 1524 0.010 0.020 1580 1.403 1.977 2140 5.596 5.000 189 33.015 23.636 77 11.653 15.000 261 13.695 15.000 13 0.080 0.200 241 0.007 0.021 1193 0.296 0.223 1.949 64 1075 20 99.91 1.9 34.17 4GFN 62917 17123 0 0 1 99.5 1.9 2.0 2.6 2474 .475 1 3.6 99.9 refinement REFMAC 5.6.0117 Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic 1 N N 2 N N 3 N N 4 N N A LEU 19 A LEU 2 HELX_P A ARG 25 A ARG 8 1 1 7 A PRO 26 A PRO 9 HELX_P A GLY 31 A GLY 14 1 2 6 A SER 34 A SER 17 HELX_P A ALA 55 A ALA 38 1 3 22 A PRO 91 A PRO 74 HELX_P A VAL 99 A VAL 82 1 4 9 A GLY 121 A GLY 104 HELX_P A LEU 128 A LEU 111 1 5 8 A ASP 185 A ASP 168 HELX_P A ASN 200 A ASN 183 1 6 16 Isomerase/Isomerase inhibitor ATP-binding, Nucleotide-binding, Topoisomerase, ATP-binding domain, DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, Isomerase-Isomerase inhibitor complex, cytosol Q839Z1_ENTFA UNP 1 18 Q839Z1 GLEAVRKRPGMYIGSTSGEGLHHLVWEIVDNSIDEALAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKTGRPAVETVF TVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTSLDVRVYKDGKVYYQEYRRGAVVDDLKVIEETDRHGTTVHFIPDPEI FTETTVYDFDKLATRVRELAFLNRGLHISIEDRREGQEDKKEYHYEG 18 224 4GFN 18 224 Q839Z1 A 1 1 207 1 expression tag LEU 225 4GFN A Q839Z1 UNP 208 1 expression tag GLU 226 4GFN A Q839Z1 UNP 209 1 expression tag HIS 227 4GFN A Q839Z1 UNP 210 1 expression tag HIS 228 4GFN A Q839Z1 UNP 211 1 expression tag HIS 229 4GFN A Q839Z1 UNP 212 1 expression tag HIS 230 4GFN A Q839Z1 UNP 213 1 expression tag HIS 231 4GFN A Q839Z1 UNP 214 1 expression tag HIS 232 4GFN A Q839Z1 UNP 215 3 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A ALA 151 A ALA 134 A VAL 152 A VAL 135 A LYS 141 A LYS 124 A ARG 148 A ARG 131 A LYS 157 A LYS 140 A GLU 161 A GLU 144 A ALA 151 A ALA 134 A VAL 152 A VAL 135 A LYS 141 A LYS 124 A ARG 148 A ARG 131 A SER 129 A SER 112 A LYS 138 A LYS 121 A GLY 166 A GLY 149 A PRO 173 A PRO 156 A ILE 71 A ILE 54 A ASP 75 A ASP 58 A SER 60 A SER 43 A ILE 65 A ILE 48 A HIS 204 A HIS 187 A ASP 209 A ASP 192 A ASP 216 A ASP 199 A HIS 221 A HIS 204 BINDING SITE FOR RESIDUE SUY A 301 A SUY 301 Software 14 BINDING SITE FOR RESIDUE GOL A 302 A GOL 302 Software 8 A ASN 48 A ASN 31 14 1_555 A SER 49 A SER 32 14 1_555 A GLU 52 A GLU 35 14 1_555 A ASP 75 A ASP 58 14 1_555 A ARG 78 A ARG 61 14 1_555 A GLY 79 A GLY 62 14 1_555 A ILE 80 A ILE 63 14 1_555 A PRO 81 A PRO 64 14 1_555 A GLY 119 A GLY 102 14 1_555 A SER 122 A SER 105 14 1_555 A THR 167 A THR 150 14 1_555 A HOH 426 D HOH 14 1_555 A HOH 514 D HOH 14 1_555 A HOH 529 D HOH 14 1_555 A ALA 53 A ALA 36 8 1_555 A THR 130 A THR 113 8 2_454 A ARG 148 A ARG 131 8 2_454 A ARG 149 A ARG 132 8 2_454 A ASN 200 A ASN 183 8 1_555 A ARG 201 A ARG 184 8 1_555 A LEU 203 A LEU 186 8 1_555 A HOH 465 D HOH 8 1_555 19 P 21 21 21