0.022458 0.012966 0.000000 0.000000 0.025933 0.000000 0.000000 0.000000 0.016050 0.00000 0.00000 0.00000 Yu, Y. Ulbrich, M.H. Li, M.-H. Dobbins, S. Zhang, W.K. Tong, L. Isacoff, E.Y. Yang, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 44.527 44.527 62.306 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N O N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N N N 58 S C N 59 N C N 60 N O N 61 N C N 62 N C N 63 N C N 64 N O N 65 N N N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N N N 78 S C N 79 N C N 80 N O N 81 N C N 82 N C N 83 N C N 84 N O N 85 N O N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 N C N 98 N C N 99 N O N 100 N O N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N O N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 S C N 114 N C N 115 N C N 116 N C N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 N C N 136 N C N 137 N C N 138 N C N 139 N O N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N N N 154 S C N 155 N C N 156 N O N 157 N C N 158 N C N 159 N C N 160 N C N 161 N N N 162 N O N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N N N 179 S C N 180 N C N 181 N O N 182 N C N 183 N C N 184 N S N 185 N C N 186 N O N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C Y 203 N C Y 204 N C Y 205 N C Y 206 N C Y 207 N C Y 208 N C N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N O N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N N N 236 S C N 237 N C N 238 N O N 239 R C N 240 N O N 241 N C N 242 N O N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N N N 253 S C N 254 N C N 255 N O N 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N N Y 261 N C Y 262 N C Y 263 N C Y 264 N C Y 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C Y 284 N C Y 285 N C Y 286 N C Y 287 N C Y 288 N C Y 289 N C N 290 N O N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 N C N 308 N C N 309 N C N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N doub N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N sing N 196 N sing N 197 N sing Y 198 N doub Y 199 N sing Y 200 N sing N 201 N sing Y 202 N doub N 203 N sing Y 204 N doub N 205 N sing Y 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing Y 250 N doub Y 251 N sing Y 252 N sing N 253 N sing Y 254 N doub Y 255 N sing Y 256 N sing N 257 N sing Y 258 N sing Y 259 N doub N 260 N sing Y 261 N doub N 262 N sing Y 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing Y 278 N doub Y 279 N sing Y 280 N sing N 281 N sing Y 282 N doub N 283 N sing Y 284 N doub N 285 N sing Y 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing UK Nat Commun 2041-1723 3 1252 1252 10.1038/ncomms2257 23212381 Molecular mechanism of the assembly of an acid-sensing receptor ion channel complex. 2012 10.2210/pdb4gif/pdb pdb_00004gif 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2005-02-05 MAR CCD 165 mm Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 0.9792 1.0 X4C NSLS 0.9792 SYNCHROTRON NSLS BEAMLINE X4C 5102.927 Polycystic kidney disease 2-like 1 protein UNP residues 699-743 1 man polymer 18.015 water 44 nat water Polycystin-2 homolog, Polycystin-2L1, Polycystin-L, Polycystin-L1 no no GGWVSGEEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLERKGW GGWVSGEEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLERKGW A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample PKD2L1, PKD2L, PKDL 9606 Homo sapiens 562 Escherichia coli 1 3.49 64.80 EVAPORATION 7.5 18-20% PEG 8000, 100 mM HEPES, pH 7.5, 3.9 mM HEGA-9, EVAPORATION, temperature 293.0K 293.0 chem_comp_atom chem_comp_bond database_2 repository Initial release Database references Data collection Database references 1 0 2012-12-05 1 1 2012-12-26 1 2 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 2012-08-08 REL REL HOH water THE CRYSTALLIZED SEQUENCE IS: MGSSHHHHHHSQDPKEELAGQKDELQLSDLLKQGYNKTLLRLRLRKERVSDVQKVLQGGEQEIQFEDFTNTLRELGHAEHEITELTATFTKFDRDGNRILDEKEQEKMRQDLEEERVALNTEIEKLGRSIVSSPQGKSGPEAARA(GGWVSGEEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLERKGW)LAPSPGVKEQAIWKHPQPAPAVTPDPWGVQGGQESEVPYKREEEALEERRLSRGEIPTLQRS OF WHICH THE SEGMENT LISTED IN SEQRES RECORD WAS OBSERVED IN THE ELECTRON DENSITY. THE AUTHORS BELIEVE THAT THE PROTEIN WAS DEGRADED DURING THE PROCESS OF CRYSTALLIZATION AND ONLY THE COILED COIL DOMAIN WAS CRYSTALLIZATION. TO TEST THIS POSSIBILITY, THE AUTHORS COLLECTED SOME CRYSTALS AND RAN IT ON SDS-PAGE. ONLY A DEGRADED BAND WITH A MOLECULAR WEIGHT MATCH THE COILED COIL DOMAIN WAS SHOWN ON THE GEL. HOWEVER THE AUTHORS DO NOT KNOW HOW MANY AMINO ACIDS ARE MISSING FROM THE N- AND C-TERMINUS DUE TO DISORDER. HOH 1 2 HOH HOH 801 A HOH 2 2 HOH HOH 802 A HOH 3 2 HOH HOH 803 A HOH 4 2 HOH HOH 804 A HOH 5 2 HOH HOH 805 A HOH 6 2 HOH HOH 806 A HOH 7 2 HOH HOH 807 A HOH 8 2 HOH HOH 808 A HOH 9 2 HOH HOH 809 A HOH 10 2 HOH HOH 810 A HOH 11 2 HOH HOH 811 A HOH 12 2 HOH HOH 812 A HOH 13 2 HOH HOH 813 A HOH 14 2 HOH HOH 814 A HOH 15 2 HOH HOH 815 A HOH 16 2 HOH HOH 816 A HOH 17 2 HOH HOH 817 A HOH 18 2 HOH HOH 818 A HOH 19 2 HOH HOH 819 A HOH 20 2 HOH HOH 820 A HOH 21 2 HOH HOH 821 A HOH 22 2 HOH HOH 822 A HOH 23 2 HOH HOH 823 A HOH 24 2 HOH HOH 824 A HOH 25 2 HOH HOH 825 A HOH 26 2 HOH HOH 826 A HOH 27 2 HOH HOH 827 A HOH 28 2 HOH HOH 828 A HOH 29 2 HOH HOH 829 A HOH 30 2 HOH HOH 830 A HOH 31 2 HOH HOH 831 A HOH 32 2 HOH HOH 832 A HOH 33 2 HOH HOH 833 A HOH 34 2 HOH HOH 834 A HOH 35 2 HOH HOH 835 A HOH 36 2 HOH HOH 836 A HOH 37 2 HOH HOH 837 A HOH 38 2 HOH HOH 838 A HOH 39 2 HOH HOH 839 A HOH 40 2 HOH HOH 840 A HOH 41 2 HOH HOH 841 A HOH 42 2 HOH HOH 842 A HOH 43 2 HOH HOH 843 A HOH 44 2 HOH HOH 844 A GLY 699 n 1 GLY 699 A GLY 700 n 2 GLY 700 A TRP 701 n 3 TRP 701 A VAL 702 n 4 VAL 702 A SER 703 n 5 SER 703 A GLY 704 n 6 GLY 704 A GLU 705 n 7 GLU 705 A GLU 706 n 8 GLU 706 A PHE 707 n 9 PHE 707 A TYR 708 n 10 TYR 708 A MET 709 n 11 MET 709 A LEU 710 n 12 LEU 710 A THR 711 n 13 THR 711 A ARG 712 n 14 ARG 712 A ARG 713 n 15 ARG 713 A VAL 714 n 16 VAL 714 A LEU 715 n 17 LEU 715 A GLN 716 n 18 GLN 716 A LEU 717 n 19 LEU 717 A GLU 718 n 20 GLU 718 A THR 719 n 21 THR 719 A VAL 720 n 22 VAL 720 A LEU 721 n 23 LEU 721 A GLU 722 n 24 GLU 722 A GLY 723 n 25 GLY 723 A VAL 724 n 26 VAL 724 A VAL 725 n 27 VAL 725 A SER 726 n 28 SER 726 A GLN 727 n 29 GLN 727 A ILE 728 n 30 ILE 728 A ASP 729 n 31 ASP 729 A ALA 730 n 32 ALA 730 A VAL 731 n 33 VAL 731 A GLY 732 n 34 GLY 732 A SER 733 n 35 SER 733 A LYS 734 n 36 LYS 734 A LEU 735 n 37 LEU 735 A LYS 736 n 38 LYS 736 A MET 737 n 39 MET 737 A LEU 738 n 40 LEU 738 A GLU 739 n 41 GLU 739 A ARG 740 n 42 ARG 740 A LYS 741 n 43 LYS 741 A GLY 742 n 44 GLY 742 A TRP 743 n 45 TRP 743 A author_and_software_defined_assembly PISA 3 trimeric 3830 -36 10040 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_655 -y+1,x-y,z crystal symmetry operation 44.5270000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_665 -x+y+1,-x+1,z crystal symmetry operation 22.2635000000 38.5615131543 0.0000000000 0.286 0.235 0.240 2.8 20 177 1928 1896 97.4 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT Engh & Huber 2.8 20 44 401 0 0 357 0.013 1.6 0.307 0.267 2.9 14 177 2.8 20 4GIF 1938 1928 -3 -3 0.055 1 36.7 9.0 99.1 0.103 2.8 2.9 25.2 184 1 9.2 100 data collection ADSC Quantum phasing PHASER refinement CNS data reduction DENZO data scaling SCALEPACK C-terminal coiled-coil domain of transient receptor potential channel TRPP3 (PKD2L1, Polycystin-L) 1 N N 2 N N A SER 703 A SER 5 HELX_P A SER 733 A SER 35 1 1 31 A SER 733 A SER 35 HELX_P A GLY 742 A GLY 44 1 2 10 TRANSPORT PROTEIN coiled-coil, trimer, TRP channel, transient receptor potential channel, polycystic kidney disease (PKD), membrane, TRANSPORT PROTEIN PK2L1_HUMAN UNP 1 699 Q9P0L9 GGWVSGEEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLERKGW 699 743 4GIF 699 743 Q9P0L9 A 1 1 45 150 P 3 2 1