0.017367
0.000000
0.000000
0.000000
0.017367
0.000000
0.000000
0.000000
0.005442
0.000000
0.000000
0.000000
Heinisch, T.
Schirmer, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
57.580
57.580
183.760
C21 H32 Cl3 N3 O2 Rh S 1
599.827
trichloro{(1,2,3,4,5-eta)-1,2,3,4-tetramethyl-5-[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]cyclopentadienyl}rhodium(1+)
[Cp*(Biot-methylene)RhCl(H2O)2]+
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
Rh 1
102.906
Rhodium
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
CL
N
2
N
RH
N
3
N
C
N
4
N
N
N
5
N
O
N
6
N
S
N
7
R
C
N
8
N
N
N
9
N
O
N
10
N
C
N
11
N
N
N
12
S
C
N
13
S
C
N
14
N
C
N
15
N
C
N
16
N
C
N
17
N
C
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
C
N
22
N
C
N
23
N
C
N
24
N
C
N
25
S
C
N
26
N
C
N
27
N
C
N
28
N
C
N
29
N
C
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
CL
N
63
N
CL
N
64
N
N
N
65
S
C
N
66
N
C
N
67
N
O
N
68
N
C
N
69
N
O
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
N
N
85
N
C
N
86
N
N
N
87
N
N
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
N
N
105
S
C
N
106
N
C
N
107
N
O
N
108
N
C
N
109
N
C
N
110
N
O
N
111
N
N
N
112
N
O
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
CL
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
N
143
N
C
N
144
N
C
N
145
N
O
N
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
O
N
166
N
O
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
N
C
Y
192
N
C
Y
193
N
N
Y
194
N
C
Y
195
N
C
Y
196
N
N
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
N
N
212
S
C
N
213
N
C
N
214
N
O
N
215
S
C
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
N
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
S
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
RH
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
R
C
N
360
N
O
N
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
N
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
N
410
N
O
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
N
428
N
C
N
429
N
C
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
doub
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
doub
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
Y
196
N
sing
Y
197
N
doub
Y
198
N
doub
N
199
N
sing
Y
200
N
sing
N
201
N
sing
Y
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
Y
373
N
doub
Y
374
N
sing
Y
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
135
5384
5388
10.1021/ja309974s
23496309
A dual anchoring strategy for the localization and activation of artificial metalloenzymes based on the biotin-streptavidin technology.
2013
10.2210/pdb4gjv/pdb
pdb_00004gjv
100
1
CCD
2011-06-03
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
X06DA
SLS
1.0000
SYNCHROTRON
SLS BEAMLINE X06DA
16621.086
Streptavidin
S112H
1
man
polymer
599.827
trichloro{(1,2,3,4,5-eta)-1,2,3,4-tetramethyl-5-[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]cyclopentadienyl}rhodium(1+)
1
syn
non-polymer
35.453
CHLORIDE ION
4
syn
non-polymer
102.906
Rhodium
1
syn
non-polymer
18.015
water
22
nat
water
no
no
MASMTGGQQMGRDEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWK
NNYRNAHSATTWSGQYVGGAEARINTQWLLTHGTTEANAWKSTLVGHDTFTKVKPSAASIDAAKKAGVNNGNPLDAVQQ
MASMTGGQQMGRDEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWK
NNYRNAHSATTWSGQYVGGAEARINTQWLLTHGTTEANAWKSTLVGHDTFTKVKPSAASIDAAKKAGVNNGNPLDAVQQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1895
Streptomyces avidinii
469008
Escherichia coli
BL21(DE3)
plasmid
pLysS
1
2.3
46.9
VAPOR DIFFUSION, HANGING DROP
6.0
0.1 M MES, 19 % PEG500, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-02-13
1
1
2013-04-10
1
2
2013-04-24
1
3
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-08-10
REL
REL
0OD
trichloro{(1,2,3,4,5-eta)-1,2,3,4-tetramethyl-5-[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]cyclopentadienyl}rhodium(1+)
CL
CHLORIDE ION
RH
Rhodium
HOH
water
2QCB
PDB ENTRY 2QCB
PDB
experimental model
0OD
400
2
0OD
0OD
400
A
CL
401
3
CL
CL
401
A
CL
402
3
CL
CL
402
A
RH
403
4
RH
RH
403
A
CL
404
3
CL
CL
404
A
CL
405
3
CL
CL
405
A
HOH
2
5
HOH
HOH
501
A
HOH
3
5
HOH
HOH
502
A
HOH
4
5
HOH
HOH
503
A
HOH
5
5
HOH
HOH
504
A
HOH
6
5
HOH
HOH
505
A
HOH
7
5
HOH
HOH
506
A
HOH
8
5
HOH
HOH
507
A
HOH
9
5
HOH
HOH
508
A
HOH
10
5
HOH
HOH
509
A
HOH
11
5
HOH
HOH
510
A
HOH
12
5
HOH
HOH
511
A
HOH
13
5
HOH
HOH
512
A
HOH
14
5
HOH
HOH
513
A
HOH
15
5
HOH
HOH
514
A
HOH
16
5
HOH
HOH
515
A
HOH
17
5
HOH
HOH
516
A
HOH
18
5
HOH
HOH
517
A
HOH
19
5
HOH
HOH
518
A
HOH
20
5
HOH
HOH
519
A
HOH
21
5
HOH
HOH
520
A
HOH
22
5
HOH
HOH
521
A
HOH
23
5
HOH
HOH
522
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
ASP
13
n
13
ASP
13
A
GLU
14
n
14
GLU
14
A
ALA
15
n
15
ALA
15
A
GLY
16
n
16
GLY
16
A
ILE
17
n
17
ILE
17
A
THR
18
n
18
THR
18
A
GLY
19
n
19
GLY
19
A
THR
20
n
20
THR
20
A
TRP
21
n
21
TRP
21
A
TYR
22
n
22
TYR
22
A
ASN
23
n
23
ASN
23
A
GLN
24
n
24
GLN
24
A
LEU
25
n
25
LEU
25
A
GLY
26
n
26
GLY
26
A
SER
27
n
27
SER
27
A
THR
28
n
28
THR
28
A
PHE
29
n
29
PHE
29
A
ILE
30
n
30
ILE
30
A
VAL
31
n
31
VAL
31
A
THR
32
n
32
THR
32
A
ALA
33
n
33
ALA
33
A
GLY
34
n
34
GLY
34
A
ALA
35
n
35
ALA
35
A
ASP
36
n
36
ASP
36
A
GLY
37
n
37
GLY
37
A
ALA
38
n
38
ALA
38
A
LEU
39
n
39
LEU
39
A
THR
40
n
40
THR
40
A
GLY
41
n
41
GLY
41
A
THR
42
n
42
THR
42
A
TYR
43
n
43
TYR
43
A
GLU
44
n
44
GLU
44
A
SER
45
n
45
SER
45
A
ALA
46
n
46
ALA
46
A
VAL
47
n
47
VAL
47
A
GLY
48
n
48
GLY
48
A
ASN
49
n
49
ASN
49
A
ALA
50
n
50
ALA
50
A
GLU
51
n
51
GLU
51
A
SER
52
n
52
SER
52
A
ARG
53
n
53
ARG
53
A
TYR
54
n
54
TYR
54
A
VAL
55
n
55
VAL
55
A
LEU
56
n
56
LEU
56
A
THR
57
n
57
THR
57
A
GLY
58
n
58
GLY
58
A
ARG
59
n
59
ARG
59
A
TYR
60
n
60
TYR
60
A
ASP
61
n
61
ASP
61
A
SER
62
n
62
SER
62
A
ALA
63
n
63
ALA
63
A
PRO
64
n
64
PRO
64
A
ALA
65
n
65
ALA
65
A
THR
66
n
66
THR
66
A
ASP
67
n
67
ASP
67
A
GLY
68
n
68
GLY
68
A
SER
69
n
69
SER
69
A
GLY
70
n
70
GLY
70
A
THR
71
n
71
THR
71
A
ALA
72
n
72
ALA
72
A
LEU
73
n
73
LEU
73
A
GLY
74
n
74
GLY
74
A
TRP
75
n
75
TRP
75
A
THR
76
n
76
THR
76
A
VAL
77
n
77
VAL
77
A
ALA
78
n
78
ALA
78
A
TRP
79
n
79
TRP
79
A
LYS
80
n
80
LYS
80
A
ASN
81
n
81
ASN
81
A
ASN
82
n
82
ASN
82
A
TYR
83
n
83
TYR
83
A
ARG
84
n
84
ARG
84
A
ASN
85
n
85
ASN
85
A
ALA
86
n
86
ALA
86
A
HIS
87
n
87
HIS
87
A
SER
88
n
88
SER
88
A
ALA
89
n
89
ALA
89
A
THR
90
n
90
THR
90
A
THR
91
n
91
THR
91
A
TRP
92
n
92
TRP
92
A
SER
93
n
93
SER
93
A
GLY
94
n
94
GLY
94
A
GLN
95
n
95
GLN
95
A
TYR
96
n
96
TYR
96
A
VAL
97
n
97
VAL
97
A
GLY
98
n
98
GLY
98
A
GLY
99
n
99
GLY
99
A
ALA
100
n
100
ALA
100
A
GLU
101
n
101
GLU
101
A
ALA
102
n
102
ALA
102
A
ARG
103
n
103
ARG
103
A
ILE
104
n
104
ILE
104
A
ASN
105
n
105
ASN
105
A
THR
106
n
106
THR
106
A
GLN
107
n
107
GLN
107
A
TRP
108
n
108
TRP
108
A
LEU
109
n
109
LEU
109
A
LEU
110
n
110
LEU
110
A
THR
111
n
111
THR
111
A
HIS
112
n
112
HIS
112
A
GLY
113
n
113
GLY
113
A
THR
114
n
114
THR
114
A
THR
115
n
115
THR
115
A
GLU
116
n
116
GLU
116
A
ALA
117
n
117
ALA
117
A
ASN
118
n
118
ASN
118
A
ALA
119
n
119
ALA
119
A
TRP
120
n
120
TRP
120
A
LYS
121
n
121
LYS
121
A
SER
122
n
122
SER
122
A
THR
123
n
123
THR
123
A
LEU
124
n
124
LEU
124
A
VAL
125
n
125
VAL
125
A
GLY
126
n
126
GLY
126
A
HIS
127
n
127
HIS
127
A
ASP
128
n
128
ASP
128
A
THR
129
n
129
THR
129
A
PHE
130
n
130
PHE
130
A
THR
131
n
131
THR
131
A
LYS
132
n
132
LYS
132
A
VAL
133
n
133
VAL
133
A
LYS
134
n
134
LYS
134
A
n
135
135
A
n
136
136
A
n
137
137
A
n
138
138
A
n
139
139
A
n
140
140
A
n
141
141
A
n
142
142
A
n
143
143
A
n
144
144
A
n
145
145
A
n
146
146
A
n
147
147
A
n
148
148
A
n
149
149
A
n
150
150
A
n
151
151
A
n
152
152
A
n
153
153
A
n
154
154
A
n
155
155
A
n
156
156
A
n
157
157
A
n
158
158
A
n
159
159
A
1.8428
0.0823
0.0461
1.7445
0.0207
1.8521
0.0181
-0.0288
0.0901
0.0787
0.0770
0.1325
-0.0485
-0.1797
-0.0924
0.2388
0.0011
-0.0027
0.2474
0.0043
0.3063
refined
14.4174
24.8201
-3.3717
X-RAY DIFFRACTION
A
13
A
134
X-RAY DIFFRACTION
1
chain A and resid 13:134
software_defined_assembly
PISA
4
tetrameric
11250
-152
18340
A
HIS
112
B
A
ND1
HIS
112
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C15
0OD
1_555
155.5
A
HIS
112
B
A
ND1
HIS
112
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C17
0OD
1_555
119.0
A
0OD
400
B
C15
0OD
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C17
0OD
1_555
65.5
A
HIS
112
B
A
ND1
HIS
112
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C16
0OD
1_555
156.8
A
0OD
400
B
C15
0OD
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C16
0OD
1_555
38.9
A
0OD
400
B
C17
0OD
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C16
0OD
1_555
39.3
A
HIS
112
B
A
ND1
HIS
112
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C13
0OD
1_555
100.9
A
0OD
400
B
C15
0OD
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C13
0OD
1_555
66.6
A
0OD
400
B
C17
0OD
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C13
0OD
1_555
39.4
A
0OD
400
B
C16
0OD
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C13
0OD
1_555
66.6
A
HIS
112
B
A
ND1
HIS
112
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C14
0OD
1_555
117.7
A
0OD
400
B
C15
0OD
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C14
0OD
1_555
39.5
A
0OD
400
B
C17
0OD
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C14
0OD
1_555
65.6
A
0OD
400
B
C16
0OD
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C14
0OD
1_555
65.8
A
0OD
400
B
C13
0OD
1_555
A
0OD
400
B
RH
0OD
1_555
A
0OD
400
B
C14
0OD
1_555
39.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z
crystal symmetry operation
57.5800000000
57.5800000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
10_665
-x+1,-y+1,z
crystal symmetry operation
57.5800000000
57.5800000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
15_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
TRP
21
A
N
TRP
21
A
O
PHE
29
A
O
PHE
29
A
N
THR
32
A
N
THR
32
A
O
THR
40
A
O
THR
40
A
N
TYR
43
A
N
TYR
43
A
O
TYR
54
A
O
TYR
54
A
N
THR
57
A
N
THR
57
A
O
THR
76
A
O
THR
76
A
N
THR
71
A
N
THR
71
A
O
TYR
96
A
O
TYR
96
A
N
VAL
97
A
N
VAL
97
A
O
ARG
103
A
O
ARG
103
A
N
TRP
108
A
N
TRP
108
A
O
GLY
126
A
O
GLY
126
A
O
THR
131
A
O
THR
131
A
N
TYR
22
A
N
TYR
22
1
A
CL
402
D
CL
1
A
HOH
502
H
HOH
1
A
CD
GLU
101
A
CD
GLU
101
0
Y
1
A
CD
GLU
116
A
CD
GLU
116
0
Y
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
SER
3
A
SER
3
1
Y
1
A
MET
4
A
MET
4
1
Y
1
A
THR
5
A
THR
5
1
Y
1
A
GLY
6
A
GLY
6
1
Y
1
A
GLY
7
A
GLY
7
1
Y
1
A
GLN
8
A
GLN
8
1
Y
1
A
GLN
9
A
GLN
9
1
Y
1
A
MET
10
A
MET
10
1
Y
1
A
GLY
11
A
GLY
11
1
Y
1
A
ARG
12
A
ARG
12
1
Y
1
A
PRO
135
A
PRO
135
1
Y
1
A
SER
136
A
SER
136
1
Y
1
A
ALA
137
A
ALA
137
1
Y
1
A
ALA
138
A
ALA
138
1
Y
1
A
SER
139
A
SER
139
1
Y
1
A
ILE
140
A
ILE
140
1
Y
1
A
ASP
141
A
ASP
141
1
Y
1
A
ALA
142
A
ALA
142
1
Y
1
A
ALA
143
A
ALA
143
1
Y
1
A
LYS
144
A
LYS
144
1
Y
1
A
LYS
145
A
LYS
145
1
Y
1
A
ALA
146
A
ALA
146
1
Y
1
A
GLY
147
A
GLY
147
1
Y
1
A
VAL
148
A
VAL
148
1
Y
1
A
ASN
149
A
ASN
149
1
Y
1
A
ASN
150
A
ASN
150
1
Y
1
A
GLY
151
A
GLY
151
1
Y
1
A
ASN
152
A
ASN
152
1
Y
1
A
PRO
153
A
PRO
153
1
Y
1
A
LEU
154
A
LEU
154
1
Y
1
A
ASP
155
A
ASP
155
1
Y
1
A
ALA
156
A
ALA
156
1
Y
1
A
VAL
157
A
VAL
157
1
Y
1
A
GLN
158
A
GLN
158
1
Y
1
A
GLN
159
A
GLN
159
1
Y
1
A
SER
52
64.12
-154.03
1
A
THR
66
-95.86
33.26
1
A
ASN
81
-136.93
-158.48
1
A
GLU
101
-116.34
74.20
83.66
35.641
20.01
0.230
0.185
0.189
2.400
19.876
1000
10013
9.990
87.030
1.00
0.00
0.320
1
1.34
MOLECULAR REPLACEMENT
25.050
0.900
1.110
PDB ENTRY 2QCB
ML
FLAT BULK SOLVENT MODEL
2.400
19.876
22
972
33
0
917
2.4
54.946
4GJV
11694
10084
1
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
refinement
PHENIX
dev_1050
Streptavidin-S112H
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
3
N
N
3
N
N
5
N
N
A
ASP
13
A
ASP
13
HELX_P
A
THR
18
A
THR
18
1
1
6
A
THR
115
A
THR
115
HELX_P
A
LYS
121
A
LYS
121
5
2
7
metalc
2.334
B
A
HIS
112
A
ND1
HIS
112
1_555
A
0OD
400
B
RH
0OD
1_555
metalc
2.269
A
HIS
127
A
NE2
HIS
127
1_555
A
RH
403
E
RH1
RH
1_555
Biotin-binding protein
artificial metalloenyzme, artificial transfer hydrogenase, beta barrel, tetramer, biotin, iridium pentamethylcyclopentadienyl, Biotin-binding protein
SAV_STRAV
UNP
1
37
P22629
AEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTW
SGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHDTFTKVKPSAASIDAAKKAGVNNGNPLDAVQQ
37
183
4GJV
2
159
P22629
A
1
2
159
1
expression tag
MET
1
4GJV
A
P22629
UNP
1
1
expression tag
SER
3
4GJV
A
P22629
UNP
3
1
expression tag
MET
4
4GJV
A
P22629
UNP
4
1
expression tag
THR
5
4GJV
A
P22629
UNP
5
1
expression tag
GLY
6
4GJV
A
P22629
UNP
6
1
expression tag
GLY
7
4GJV
A
P22629
UNP
7
1
expression tag
GLN
8
4GJV
A
P22629
UNP
8
1
expression tag
GLN
9
4GJV
A
P22629
UNP
9
1
expression tag
MET
10
4GJV
A
P22629
UNP
10
1
expression tag
GLY
11
4GJV
A
P22629
UNP
11
1
expression tag
ARG
12
4GJV
A
P22629
UNP
12
1
expression tag
ASP
13
4GJV
A
P22629
UNP
13
1
SER
engineered mutation
HIS
112
4GJV
A
P22629
UNP
136
112
9
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
19
A
GLY
19
A
TYR
22
A
TYR
22
A
THR
28
A
THR
28
A
ALA
33
A
ALA
33
A
ALA
38
A
ALA
38
A
GLU
44
A
GLU
44
A
TYR
54
A
TYR
54
A
TYR
60
A
TYR
60
A
THR
71
A
THR
71
A
LYS
80
A
LYS
80
A
ASN
85
A
ASN
85
A
VAL
97
A
VAL
97
A
ARG
103
A
ARG
103
A
HIS
112
A
HIS
112
A
THR
123
A
THR
123
A
THR
131
A
THR
131
A
GLY
19
A
GLY
19
A
TYR
22
A
TYR
22
BINDING SITE FOR RESIDUE 0OD A 400
A
0OD
400
Software
18
BINDING SITE FOR RESIDUE CL A 401
A
CL
401
Software
1
BINDING SITE FOR RESIDUE CL A 402
A
CL
402
Software
2
BINDING SITE FOR RESIDUE RH A 403
A
RH
403
Software
1
BINDING SITE FOR RESIDUE CL A 404
A
CL
404
Software
1
BINDING SITE FOR RESIDUE CL A 405
A
CL
405
Software
2
A
ASN
23
A
ASN
23
18
1_555
A
LEU
25
A
LEU
25
18
1_555
A
SER
27
A
SER
27
18
1_555
A
TYR
43
A
TYR
43
18
1_555
A
SER
45
A
SER
45
18
1_555
A
VAL
47
A
VAL
47
18
1_555
A
GLY
48
A
GLY
48
18
1_555
A
ASN
49
A
ASN
49
18
1_555
A
ALA
50
A
ALA
50
18
1_555
A
TRP
79
A
TRP
79
18
1_555
A
SER
88
A
SER
88
18
1_555
A
THR
90
A
THR
90
18
1_555
A
TRP
92
A
TRP
92
18
1_555
A
TRP
108
A
TRP
108
18
1_555
A
HIS
112
A
HIS
112
18
1_555
A
TRP
120
A
TRP
120
18
10_665
A
LEU
124
A
LEU
124
18
1_555
A
ASP
128
A
ASP
128
18
1_555
A
HIS
87
A
HIS
87
1
1_555
A
ARG
84
A
ARG
84
2
1_555
A
ARG
84
A
ARG
84
2
5_554
A
HIS
127
A
HIS
127
1
1_555
A
GLY
48
A
GLY
48
1
1_555
A
ASP
36
A
ASP
36
2
15_555
A
LYS
80
A
LYS
80
2
1_555
98
I 41 2 2