0.006727 0.000000 0.000982 0.000000 0.011885 0.000000 0.000000 0.000000 0.019057 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 98.310 90.000 148.653 84.139 53.031 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a hypothetical protein (RUMGNA_01148) from Ruminococcus gnavus ATCC 29149 at 2.55 A resolution 10.2210/pdb4gl6/pdb pdb_00004gl6 100 1 double crystal monochromator CCD 2012-05-03 MARMOSAIC 325 mm CCD double crystal MAD M x-ray 1 0.91162 1.0 0.97922 1.0 BL9-2 SSRL 0.91162,0.97922 SYNCHROTRON SSRL BEAMLINE BL9-2 28976.992 hypothetical protein 2 man polymer 92.094 GLYCEROL 3 syn non-polymer 18.015 water 26 nat water no yes GHENEISIKIETYLQEEYGEEFEVLSWNQPKLLPSDNGAIYATCISKNDPKHPFEGSYFNPEEPNSEIEIIYDGYGQRLL AKQ(MSE)ES(MSE)IEEAISQAAENYYIQGDIIIPEEWQDIPVEEISQWKNYVDLCNQSNSDYKTLGSAWVYIDAST (MSE)KGKTDEEEYQ(MSE)YEEVYRDKLGGQALLYVYYLDHKSFEKAEKILEIFTSGDEGSNFEDIIEGQPYFGTI (MSE)RYGSDKFDDNLEIFKAAKQGKEQEKYQ GHENEISIKIETYLQEEYGEEFEVLSWNQPKLLPSDNGAIYATCISKNDPKHPFEGSYFNPEEPNSEIEIIYDGYGQRLL AKQMESMIEEAISQAAENYYIQGDIIIPEEWQDIPVEEISQWKNYVDLCNQSNSDYKTLGSAWVYIDASTMKGKTDEEEY QMYEEVYRDKLGGQALLYVYYLDHKSFEKAEKILEIFTSGDEGSNFEDIIEGQPYFGTIMRYGSDKFDDNLEIFKAAKQG KEQEKYQ A,B JCSG-417402 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 29149 sample RUMGNA_01148 411470 Ruminococcus gnavus 562 Escherichia Coli PB1 Plasmid SpeedET 1 2.83 56.56 VAPOR DIFFUSION, SITTING DROP 6.5 0.08M sodium cacodylate pH 6.5, 20% glycerol, 16% polyethylene glycol 8000, 0.16M magnesium acetate, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 Joint Center for Structural Genomics JCSG PSI:Biology reflns_shell software citation_author database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Structure summary Data collection Refinement description Database references Database references Derived calculations 1 0 2012-10-03 1 1 2014-12-24 1 2 2017-10-11 1 3 2018-01-24 1 4 2023-02-01 _reflns_shell.percent_possible_all _software.classification _software.name _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2012-08-13 REL REL GOL GLYCEROL HOH water THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 25-270 OF THE TARGET SEQUENCE. GOL 301 2 GOL GOL 301 A GOL 302 2 GOL GOL 302 A GOL 300 2 GOL GOL 300 B HOH 305 3 HOH HOH 401 A HOH 308 3 HOH HOH 402 A HOH 309 3 HOH HOH 403 A HOH 310 3 HOH HOH 404 A HOH 315 3 HOH HOH 405 A HOH 318 3 HOH HOH 406 A HOH 319 3 HOH HOH 407 A HOH 321 3 HOH HOH 408 A HOH 325 3 HOH HOH 409 A HOH 326 3 HOH HOH 410 A HOH 327 3 HOH HOH 411 A HOH 328 3 HOH HOH 412 A HOH 303 3 HOH HOH 401 B HOH 304 3 HOH HOH 402 B HOH 306 3 HOH HOH 403 B HOH 307 3 HOH HOH 404 B HOH 311 3 HOH HOH 405 B HOH 312 3 HOH HOH 406 B HOH 313 3 HOH HOH 407 B HOH 314 3 HOH HOH 408 B HOH 316 3 HOH HOH 409 B HOH 317 3 HOH HOH 410 B HOH 320 3 HOH HOH 411 B HOH 322 3 HOH HOH 412 B HOH 323 3 HOH HOH 413 B HOH 324 3 HOH HOH 414 B n 1 0 A n 2 25 A n 3 26 A n 4 27 A GLU 28 n 5 GLU 28 A ILE 29 n 6 ILE 29 A SER 30 n 7 SER 30 A ILE 31 n 8 ILE 31 A LYS 32 n 9 LYS 32 A ILE 33 n 10 ILE 33 A GLU 34 n 11 GLU 34 A THR 35 n 12 THR 35 A TYR 36 n 13 TYR 36 A LEU 37 n 14 LEU 37 A GLN 38 n 15 GLN 38 A GLU 39 n 16 GLU 39 A GLU 40 n 17 GLU 40 A TYR 41 n 18 TYR 41 A GLY 42 n 19 GLY 42 A GLU 43 n 20 GLU 43 A GLU 44 n 21 GLU 44 A PHE 45 n 22 PHE 45 A GLU 46 n 23 GLU 46 A VAL 47 n 24 VAL 47 A LEU 48 n 25 LEU 48 A SER 49 n 26 SER 49 A TRP 50 n 27 TRP 50 A ASN 51 n 28 ASN 51 A GLN 52 n 29 GLN 52 A PRO 53 n 30 PRO 53 A LYS 54 n 31 LYS 54 A LEU 55 n 32 LEU 55 A LEU 56 n 33 LEU 56 A PRO 57 n 34 PRO 57 A SER 58 n 35 SER 58 A ASP 59 n 36 ASP 59 A ASN 60 n 37 ASN 60 A GLY 61 n 38 GLY 61 A ALA 62 n 39 ALA 62 A ILE 63 n 40 ILE 63 A TYR 64 n 41 TYR 64 A ALA 65 n 42 ALA 65 A THR 66 n 43 THR 66 A CYS 67 n 44 CYS 67 A ILE 68 n 45 ILE 68 A SER 69 n 46 SER 69 A LYS 70 n 47 LYS 70 A ASN 71 n 48 ASN 71 A ASP 72 n 49 ASP 72 A PRO 73 n 50 PRO 73 A LYS 74 n 51 LYS 74 A HIS 75 n 52 HIS 75 A PRO 76 n 53 PRO 76 A PHE 77 n 54 PHE 77 A GLU 78 n 55 GLU 78 A GLY 79 n 56 GLY 79 A SER 80 n 57 SER 80 A TYR 81 n 58 TYR 81 A PHE 82 n 59 PHE 82 A ASN 83 n 60 ASN 83 A PRO 84 n 61 PRO 84 A GLU 85 n 62 GLU 85 A GLU 86 n 63 GLU 86 A PRO 87 n 64 PRO 87 A ASN 88 n 65 ASN 88 A SER 89 n 66 SER 89 A GLU 90 n 67 GLU 90 A ILE 91 n 68 ILE 91 A GLU 92 n 69 GLU 92 A ILE 93 n 70 ILE 93 A ILE 94 n 71 ILE 94 A TYR 95 n 72 TYR 95 A ASP 96 n 73 ASP 96 A GLY 97 n 74 GLY 97 A TYR 98 n 75 TYR 98 A GLY 99 n 76 GLY 99 A GLN 100 n 77 GLN 100 A ARG 101 n 78 ARG 101 A LEU 102 n 79 LEU 102 A LEU 103 n 80 LEU 103 A ALA 104 n 81 ALA 104 A LYS 105 n 82 LYS 105 A GLN 106 n 83 GLN 106 A MSE 107 n 84 MSE 107 A GLU 108 n 85 GLU 108 A SER 109 n 86 SER 109 A MSE 110 n 87 MSE 110 A ILE 111 n 88 ILE 111 A GLU 112 n 89 GLU 112 A GLU 113 n 90 GLU 113 A ALA 114 n 91 ALA 114 A ILE 115 n 92 ILE 115 A SER 116 n 93 SER 116 A GLN 117 n 94 GLN 117 A ALA 118 n 95 ALA 118 A ALA 119 n 96 ALA 119 A GLU 120 n 97 GLU 120 A ASN 121 n 98 ASN 121 A TYR 122 n 99 TYR 122 A TYR 123 n 100 TYR 123 A ILE 124 n 101 ILE 124 A GLN 125 n 102 GLN 125 A GLY 126 n 103 GLY 126 A ASP 127 n 104 ASP 127 A ILE 128 n 105 ILE 128 A ILE 129 n 106 ILE 129 A ILE 130 n 107 ILE 130 A PRO 131 n 108 PRO 131 A GLU 132 n 109 GLU 132 A GLU 133 n 110 GLU 133 A TRP 134 n 111 TRP 134 A GLN 135 n 112 GLN 135 A ASP 136 n 113 ASP 136 A ILE 137 n 114 ILE 137 A PRO 138 n 115 PRO 138 A VAL 139 n 116 VAL 139 A GLU 140 n 117 GLU 140 A GLU 141 n 118 GLU 141 A ILE 142 n 119 ILE 142 A SER 143 n 120 SER 143 A GLN 144 n 121 GLN 144 A TRP 145 n 122 TRP 145 A LYS 146 n 123 LYS 146 A ASN 147 n 124 ASN 147 A TYR 148 n 125 TYR 148 A VAL 149 n 126 VAL 149 A ASP 150 n 127 ASP 150 A LEU 151 n 128 LEU 151 A CYS 152 n 129 CYS 152 A ASN 153 n 130 ASN 153 A GLN 154 n 131 GLN 154 A SER 155 n 132 SER 155 A ASN 156 n 133 ASN 156 A SER 157 n 134 SER 157 A ASP 158 n 135 ASP 158 A TYR 159 n 136 TYR 159 A LYS 160 n 137 LYS 160 A THR 161 n 138 THR 161 A LEU 162 n 139 LEU 162 A GLY 163 n 140 GLY 163 A SER 164 n 141 SER 164 A ALA 165 n 142 ALA 165 A TRP 166 n 143 TRP 166 A VAL 167 n 144 VAL 167 A TYR 168 n 145 TYR 168 A ILE 169 n 146 ILE 169 A ASP 170 n 147 ASP 170 A ALA 171 n 148 ALA 171 A SER 172 n 149 SER 172 A THR 173 n 150 THR 173 A MSE 174 n 151 MSE 174 A LYS 175 n 152 LYS 175 A GLY 176 n 153 GLY 176 A LYS 177 n 154 LYS 177 A THR 178 n 155 THR 178 A ASP 179 n 156 ASP 179 A GLU 180 n 157 GLU 180 A GLU 181 n 158 GLU 181 A GLU 182 n 159 GLU 182 A TYR 183 n 160 TYR 183 A GLN 184 n 161 GLN 184 A MSE 185 n 162 MSE 185 A TYR 186 n 163 TYR 186 A GLU 187 n 164 GLU 187 A GLU 188 n 165 GLU 188 A VAL 189 n 166 VAL 189 A TYR 190 n 167 TYR 190 A ARG 191 n 168 ARG 191 A ASP 192 n 169 ASP 192 A LYS 193 n 170 LYS 193 A LEU 194 n 171 LEU 194 A GLY 195 n 172 GLY 195 A GLY 196 n 173 GLY 196 A GLN 197 n 174 GLN 197 A ALA 198 n 175 ALA 198 A LEU 199 n 176 LEU 199 A LEU 200 n 177 LEU 200 A TYR 201 n 178 TYR 201 A VAL 202 n 179 VAL 202 A TYR 203 n 180 TYR 203 A TYR 204 n 181 TYR 204 A LEU 205 n 182 LEU 205 A ASP 206 n 183 ASP 206 A HIS 207 n 184 HIS 207 A LYS 208 n 185 LYS 208 A SER 209 n 186 SER 209 A PHE 210 n 187 PHE 210 A GLU 211 n 188 GLU 211 A LYS 212 n 189 LYS 212 A ALA 213 n 190 ALA 213 A GLU 214 n 191 GLU 214 A LYS 215 n 192 LYS 215 A ILE 216 n 193 ILE 216 A LEU 217 n 194 LEU 217 A GLU 218 n 195 GLU 218 A ILE 219 n 196 ILE 219 A PHE 220 n 197 PHE 220 A THR 221 n 198 THR 221 A SER 222 n 199 SER 222 A GLY 223 n 200 GLY 223 A ASP 224 n 201 ASP 224 A GLU 225 n 202 GLU 225 A GLY 226 n 203 GLY 226 A SER 227 n 204 SER 227 A ASN 228 n 205 ASN 228 A PHE 229 n 206 PHE 229 A GLU 230 n 207 GLU 230 A ASP 231 n 208 ASP 231 A ILE 232 n 209 ILE 232 A ILE 233 n 210 ILE 233 A GLU 234 n 211 GLU 234 A GLY 235 n 212 GLY 235 A GLN 236 n 213 GLN 236 A PRO 237 n 214 PRO 237 A TYR 238 n 215 TYR 238 A PHE 239 n 216 PHE 239 A GLY 240 n 217 GLY 240 A THR 241 n 218 THR 241 A ILE 242 n 219 ILE 242 A MSE 243 n 220 MSE 243 A ARG 244 n 221 ARG 244 A TYR 245 n 222 TYR 245 A GLY 246 n 223 GLY 246 A SER 247 n 224 SER 247 A ASP 248 n 225 ASP 248 A LYS 249 n 226 LYS 249 A PHE 250 n 227 PHE 250 A ASP 251 n 228 ASP 251 A ASP 252 n 229 ASP 252 A ASN 253 n 230 ASN 253 A LEU 254 n 231 LEU 254 A GLU 255 n 232 GLU 255 A ILE 256 n 233 ILE 256 A PHE 257 n 234 PHE 257 A LYS 258 n 235 LYS 258 A ALA 259 n 236 ALA 259 A ALA 260 n 237 ALA 260 A LYS 261 n 238 LYS 261 A GLN 262 n 239 GLN 262 A GLY 263 n 240 GLY 263 A LYS 264 n 241 LYS 264 A n 242 265 A n 243 266 A n 244 267 A n 245 268 A n 246 269 A n 247 270 A GLY 0 n 1 GLY 0 B HIS 25 n 2 HIS 25 B GLU 26 n 3 GLU 26 B ASN 27 n 4 ASN 27 B GLU 28 n 5 GLU 28 B ILE 29 n 6 ILE 29 B SER 30 n 7 SER 30 B ILE 31 n 8 ILE 31 B LYS 32 n 9 LYS 32 B ILE 33 n 10 ILE 33 B GLU 34 n 11 GLU 34 B THR 35 n 12 THR 35 B TYR 36 n 13 TYR 36 B LEU 37 n 14 LEU 37 B GLN 38 n 15 GLN 38 B GLU 39 n 16 GLU 39 B GLU 40 n 17 GLU 40 B TYR 41 n 18 TYR 41 B GLY 42 n 19 GLY 42 B GLU 43 n 20 GLU 43 B GLU 44 n 21 GLU 44 B PHE 45 n 22 PHE 45 B GLU 46 n 23 GLU 46 B VAL 47 n 24 VAL 47 B LEU 48 n 25 LEU 48 B SER 49 n 26 SER 49 B TRP 50 n 27 TRP 50 B ASN 51 n 28 ASN 51 B GLN 52 n 29 GLN 52 B PRO 53 n 30 PRO 53 B LYS 54 n 31 LYS 54 B LEU 55 n 32 LEU 55 B LEU 56 n 33 LEU 56 B PRO 57 n 34 PRO 57 B SER 58 n 35 SER 58 B ASP 59 n 36 ASP 59 B ASN 60 n 37 ASN 60 B GLY 61 n 38 GLY 61 B ALA 62 n 39 ALA 62 B ILE 63 n 40 ILE 63 B TYR 64 n 41 TYR 64 B ALA 65 n 42 ALA 65 B THR 66 n 43 THR 66 B CYS 67 n 44 CYS 67 B ILE 68 n 45 ILE 68 B SER 69 n 46 SER 69 B LYS 70 n 47 LYS 70 B ASN 71 n 48 ASN 71 B ASP 72 n 49 ASP 72 B PRO 73 n 50 PRO 73 B LYS 74 n 51 LYS 74 B HIS 75 n 52 HIS 75 B PRO 76 n 53 PRO 76 B PHE 77 n 54 PHE 77 B GLU 78 n 55 GLU 78 B GLY 79 n 56 GLY 79 B SER 80 n 57 SER 80 B TYR 81 n 58 TYR 81 B PHE 82 n 59 PHE 82 B ASN 83 n 60 ASN 83 B PRO 84 n 61 PRO 84 B GLU 85 n 62 GLU 85 B GLU 86 n 63 GLU 86 B PRO 87 n 64 PRO 87 B ASN 88 n 65 ASN 88 B SER 89 n 66 SER 89 B GLU 90 n 67 GLU 90 B ILE 91 n 68 ILE 91 B GLU 92 n 69 GLU 92 B ILE 93 n 70 ILE 93 B ILE 94 n 71 ILE 94 B TYR 95 n 72 TYR 95 B ASP 96 n 73 ASP 96 B GLY 97 n 74 GLY 97 B TYR 98 n 75 TYR 98 B GLY 99 n 76 GLY 99 B GLN 100 n 77 GLN 100 B ARG 101 n 78 ARG 101 B LEU 102 n 79 LEU 102 B LEU 103 n 80 LEU 103 B ALA 104 n 81 ALA 104 B LYS 105 n 82 LYS 105 B GLN 106 n 83 GLN 106 B MSE 107 n 84 MSE 107 B GLU 108 n 85 GLU 108 B SER 109 n 86 SER 109 B MSE 110 n 87 MSE 110 B ILE 111 n 88 ILE 111 B GLU 112 n 89 GLU 112 B GLU 113 n 90 GLU 113 B ALA 114 n 91 ALA 114 B ILE 115 n 92 ILE 115 B SER 116 n 93 SER 116 B GLN 117 n 94 GLN 117 B ALA 118 n 95 ALA 118 B ALA 119 n 96 ALA 119 B GLU 120 n 97 GLU 120 B ASN 121 n 98 ASN 121 B TYR 122 n 99 TYR 122 B TYR 123 n 100 TYR 123 B ILE 124 n 101 ILE 124 B GLN 125 n 102 GLN 125 B GLY 126 n 103 GLY 126 B ASP 127 n 104 ASP 127 B ILE 128 n 105 ILE 128 B ILE 129 n 106 ILE 129 B ILE 130 n 107 ILE 130 B PRO 131 n 108 PRO 131 B GLU 132 n 109 GLU 132 B GLU 133 n 110 GLU 133 B TRP 134 n 111 TRP 134 B GLN 135 n 112 GLN 135 B ASP 136 n 113 ASP 136 B ILE 137 n 114 ILE 137 B PRO 138 n 115 PRO 138 B VAL 139 n 116 VAL 139 B GLU 140 n 117 GLU 140 B GLU 141 n 118 GLU 141 B ILE 142 n 119 ILE 142 B SER 143 n 120 SER 143 B GLN 144 n 121 GLN 144 B TRP 145 n 122 TRP 145 B LYS 146 n 123 LYS 146 B ASN 147 n 124 ASN 147 B TYR 148 n 125 TYR 148 B VAL 149 n 126 VAL 149 B ASP 150 n 127 ASP 150 B LEU 151 n 128 LEU 151 B CYS 152 n 129 CYS 152 B ASN 153 n 130 ASN 153 B GLN 154 n 131 GLN 154 B SER 155 n 132 SER 155 B ASN 156 n 133 ASN 156 B SER 157 n 134 SER 157 B ASP 158 n 135 ASP 158 B TYR 159 n 136 TYR 159 B LYS 160 n 137 LYS 160 B THR 161 n 138 THR 161 B LEU 162 n 139 LEU 162 B GLY 163 n 140 GLY 163 B SER 164 n 141 SER 164 B ALA 165 n 142 ALA 165 B TRP 166 n 143 TRP 166 B VAL 167 n 144 VAL 167 B TYR 168 n 145 TYR 168 B ILE 169 n 146 ILE 169 B ASP 170 n 147 ASP 170 B ALA 171 n 148 ALA 171 B SER 172 n 149 SER 172 B THR 173 n 150 THR 173 B MSE 174 n 151 MSE 174 B LYS 175 n 152 LYS 175 B GLY 176 n 153 GLY 176 B LYS 177 n 154 LYS 177 B THR 178 n 155 THR 178 B ASP 179 n 156 ASP 179 B GLU 180 n 157 GLU 180 B GLU 181 n 158 GLU 181 B GLU 182 n 159 GLU 182 B TYR 183 n 160 TYR 183 B GLN 184 n 161 GLN 184 B MSE 185 n 162 MSE 185 B TYR 186 n 163 TYR 186 B GLU 187 n 164 GLU 187 B GLU 188 n 165 GLU 188 B VAL 189 n 166 VAL 189 B TYR 190 n 167 TYR 190 B ARG 191 n 168 ARG 191 B ASP 192 n 169 ASP 192 B LYS 193 n 170 LYS 193 B LEU 194 n 171 LEU 194 B GLY 195 n 172 GLY 195 B GLY 196 n 173 GLY 196 B GLN 197 n 174 GLN 197 B ALA 198 n 175 ALA 198 B LEU 199 n 176 LEU 199 B LEU 200 n 177 LEU 200 B TYR 201 n 178 TYR 201 B VAL 202 n 179 VAL 202 B TYR 203 n 180 TYR 203 B TYR 204 n 181 TYR 204 B LEU 205 n 182 LEU 205 B ASP 206 n 183 ASP 206 B HIS 207 n 184 HIS 207 B LYS 208 n 185 LYS 208 B SER 209 n 186 SER 209 B PHE 210 n 187 PHE 210 B GLU 211 n 188 GLU 211 B LYS 212 n 189 LYS 212 B ALA 213 n 190 ALA 213 B GLU 214 n 191 GLU 214 B LYS 215 n 192 LYS 215 B ILE 216 n 193 ILE 216 B LEU 217 n 194 LEU 217 B GLU 218 n 195 GLU 218 B ILE 219 n 196 ILE 219 B PHE 220 n 197 PHE 220 B THR 221 n 198 THR 221 B SER 222 n 199 SER 222 B GLY 223 n 200 GLY 223 B ASP 224 n 201 ASP 224 B GLU 225 n 202 GLU 225 B GLY 226 n 203 GLY 226 B SER 227 n 204 SER 227 B ASN 228 n 205 ASN 228 B PHE 229 n 206 PHE 229 B GLU 230 n 207 GLU 230 B ASP 231 n 208 ASP 231 B ILE 232 n 209 ILE 232 B ILE 233 n 210 ILE 233 B GLU 234 n 211 GLU 234 B GLY 235 n 212 GLY 235 B GLN 236 n 213 GLN 236 B PRO 237 n 214 PRO 237 B TYR 238 n 215 TYR 238 B PHE 239 n 216 PHE 239 B GLY 240 n 217 GLY 240 B THR 241 n 218 THR 241 B ILE 242 n 219 ILE 242 B MSE 243 n 220 MSE 243 B ARG 244 n 221 ARG 244 B TYR 245 n 222 TYR 245 B GLY 246 n 223 GLY 246 B SER 247 n 224 SER 247 B ASP 248 n 225 ASP 248 B LYS 249 n 226 LYS 249 B PHE 250 n 227 PHE 250 B ASP 251 n 228 ASP 251 B ASP 252 n 229 ASP 252 B ASN 253 n 230 ASN 253 B LEU 254 n 231 LEU 254 B GLU 255 n 232 GLU 255 B ILE 256 n 233 ILE 256 B PHE 257 n 234 PHE 257 B LYS 258 n 235 LYS 258 B ALA 259 n 236 ALA 259 B ALA 260 n 237 ALA 260 B LYS 261 n 238 LYS 261 B GLN 262 n 239 GLN 262 B GLY 263 n 240 GLY 263 B LYS 264 n 241 LYS 264 B n 242 265 B n 243 266 B n 244 267 B n 245 268 B n 246 269 B n 247 270 B 2.8428 -0.0154 -0.5930 1.8870 0.4604 2.4383 -0.0564 -0.2568 -0.2560 0.1769 -0.1189 -0.1694 0.2136 0.2090 0.1753 0.2003 0.0169 -0.1395 0.3097 0.0732 0.1700 refined 48.7710 3.9660 8.4630 X-RAY DIFFRACTION 3.9948 0.9939 0.0306 2.3568 0.2430 1.6133 0.2021 0.0403 0.5524 -0.0804 -0.0898 -0.1025 -0.1229 0.0814 -0.1123 0.1836 0.0602 -0.0551 0.2296 0.0006 0.2444 refined 53.6630 32.9430 0.5700 X-RAY DIFFRACTION A 28 A 264 X-RAY DIFFRACTION 1 B 0 B 264 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric A MSE 107 SELENOMETHIONINE A MSE 84 MET A MSE 110 SELENOMETHIONINE A MSE 87 MET A MSE 174 SELENOMETHIONINE A MSE 151 MET A MSE 185 SELENOMETHIONINE A MSE 162 MET A MSE 243 SELENOMETHIONINE A MSE 220 MET B MSE 107 SELENOMETHIONINE B MSE 84 MET B MSE 110 SELENOMETHIONINE B MSE 87 MET B MSE 174 SELENOMETHIONINE B MSE 151 MET B MSE 185 SELENOMETHIONINE B MSE 162 MET B MSE 243 SELENOMETHIONINE B MSE 220 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASN 51 A N ASN 28 A O TYR 64 A O TYR 41 A N CYS 67 A N CYS 44 A O PHE 77 A O PHE 54 A N PHE 82 A N PHE 59 A O GLU 92 A O GLU 69 A N TYR 123 A N TYR 100 A O TYR 168 A O TYR 145 A N ILE 169 A N ILE 146 A O TYR 203 A O TYR 180 A N LEU 200 A N LEU 177 A O THR 241 A O THR 218 B N ASN 51 B N ASN 28 B O TYR 64 B O TYR 41 B N ILE 63 B N ILE 40 B O TYR 81 B O TYR 58 B N PHE 82 B N PHE 59 B O GLU 92 B O GLU 69 B N TYR 123 B N TYR 100 B O TYR 168 B O TYR 145 B N LEU 162 B N LEU 139 B O GLN 197 B O GLN 174 B N LEU 200 B N LEU 177 B O THR 241 B O THR 218 1 A CG GLU 140 A CG GLU 117 1 Y 1 A CD GLU 140 A CD GLU 117 1 Y 1 A OE1 GLU 140 A OE1 GLU 117 1 Y 1 A OE2 GLU 140 A OE2 GLU 117 1 Y 1 B CG LEU 55 B CG LEU 32 1 Y 1 B CD1 LEU 55 B CD1 LEU 32 1 Y 1 B CD2 LEU 55 B CD2 LEU 32 1 Y 1 B CG LEU 56 B CG LEU 33 1 Y 1 B CD1 LEU 56 B CD1 LEU 33 1 Y 1 B CD2 LEU 56 B CD2 LEU 33 1 Y 1 B CG GLU 85 B CG GLU 62 1 Y 1 B CD GLU 85 B CD GLU 62 1 Y 1 B OE1 GLU 85 B OE1 GLU 62 1 Y 1 B OE2 GLU 85 B OE2 GLU 62 1 Y 1 A GLY 0 A GLY 1 1 Y 1 A HIS 25 A HIS 2 1 Y 1 A GLU 26 A GLU 3 1 Y 1 A ASN 27 A ASN 4 1 Y 1 A GLU 265 A GLU 242 1 Y 1 A GLN 266 A GLN 243 1 Y 1 A GLU 267 A GLU 244 1 Y 1 A LYS 268 A LYS 245 1 Y 1 A TYR 269 A TYR 246 1 Y 1 A GLN 270 A GLN 247 1 Y 1 B GLU 265 B GLU 242 1 Y 1 B GLN 266 B GLN 243 1 Y 1 B GLU 267 B GLU 244 1 Y 1 B LYS 268 B LYS 245 1 Y 1 B TYR 269 B TYR 246 1 Y 1 B GLN 270 B GLN 247 1 Y 1 A LYS 54 174.84 141.39 187.750 61.0088 30.270 3.9100 0.0000 3.5300 -4.8100 0.0000 1.9300 0.9550 0.9390 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. GLYCEROL (GOL) MOLECULES FROM THE CRYSTALLIZATION SOLUTION ARE MODELED. 0.2180 0.1883 0.1899 2.5500 45.971 1088 21159 5.1000 99.7200 1.000 0.500 22.8940 0.2120 RANDOM 1 THROUGHOUT 0.000 MAD 0.4690 0.2510 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD WITH PHASES BABINET MODEL WITH MASK 2.5500 45.971 26 3937 18 0 3893 0.012 0.020 4008 0.004 0.020 2700 1.646 1.957 5415 1.404 3.000 6614 3.608 5.000 478 34.916 26.318 220 11.245 15.000 696 19.905 15.000 6 0.098 0.200 547 0.006 0.020 4507 0.004 0.020 783 0.3530 0.3330 2.6160 79 1421 1500 20 99.8700 62.923 2.55 45.971 4GL6 21164 -3.000 0.076 1 12.840 99.800 0.739 2.550 2.640 2.1 7942 2080 1 100.000 0.561 2.640 2.750 2.7 8286 2176 1 100.000 0.365 2.750 2.870 4.0 7721 2019 1 99.600 0.263 2.870 3.020 5.2 7971 2095 1 100.0 0.174 3.020 3.210 7.6 8076 2122 1 99.800 0.104 3.210 3.460 11.5 8050 2134 1 99.700 0.069 3.460 3.800 16.5 7893 2092 1 99.900 0.044 3.800 4.350 22.7 8034 2122 1 99.900 0.039 4.350 5.460 26.0 7913 2116 1 99.700 0.039 5.460 29.0 8067 2208 1 99.300 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package phasing Eric de La Fortelle sharp-develop@globalphasing.com http://www.globalphasing.com/sharp/ SHARP package data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package December 29, 2011 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.6.0117 data reduction XDS phasing SHELXD Y Crystal structure of a DUF5037 family protein (RUMGNA_01148) from Ruminococcus gnavus ATCC 29149 at 2.55 A resolution 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 3 N N CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. A GLU 28 A GLU 5 HELX_P A GLY 42 A GLY 19 1 1 15 A GLY 97 A GLY 74 HELX_P A ALA 119 A ALA 96 1 2 23 A PRO 131 A PRO 108 HELX_P A GLN 135 A GLN 112 5 3 5 A PRO 138 A PRO 115 HELX_P A SER 143 A SER 120 1 4 6 A GLN 144 A GLN 121 HELX_P A ASN 153 A ASN 130 1 5 10 A SER 172 A SER 149 HELX_P A MSE 174 A MSE 151 5 6 3 A THR 178 A THR 155 HELX_P A LYS 193 A LYS 170 1 7 16 A ASP 206 A ASP 183 HELX_P A GLU 218 A GLU 195 1 8 13 A GLY 226 A GLY 203 HELX_P A GLU 234 A GLU 211 1 9 9 A ASN 253 A ASN 230 HELX_P A GLY 263 A GLY 240 1 10 11 B GLY 0 B GLY 1 HELX_P B ASN 27 B ASN 4 5 11 4 B GLU 28 B GLU 5 HELX_P B GLY 42 B GLY 19 1 12 15 B GLY 97 B GLY 74 HELX_P B ALA 119 B ALA 96 1 13 23 B PRO 131 B PRO 108 HELX_P B GLN 135 B GLN 112 5 14 5 B PRO 138 B PRO 115 HELX_P B SER 143 B SER 120 1 15 6 B GLN 144 B GLN 121 HELX_P B SER 155 B SER 132 1 16 12 B ASN 156 B ASN 133 HELX_P B TYR 159 B TYR 136 5 17 4 B SER 172 B SER 149 HELX_P B MSE 174 B MSE 151 5 18 3 B THR 178 B THR 155 HELX_P B LYS 193 B LYS 170 1 19 16 B ASP 206 B ASP 183 HELX_P B GLU 218 B GLU 195 1 20 13 B GLY 226 B GLY 203 HELX_P B GLU 234 B GLU 211 1 21 9 B ASN 253 B ASN 230 HELX_P B GLY 263 B GLY 240 1 22 11 covale 1.329 both A GLN 106 A C GLN 83 1_555 A MSE 107 A N MSE 84 1_555 covale 1.328 both A MSE 107 A C MSE 84 1_555 A GLU 108 A N GLU 85 1_555 covale 1.331 both A SER 109 A C SER 86 1_555 A MSE 110 A N MSE 87 1_555 covale 1.326 both A MSE 110 A C MSE 87 1_555 A ILE 111 A N ILE 88 1_555 covale 1.345 both A THR 173 A C THR 150 1_555 A MSE 174 A N MSE 151 1_555 covale 1.336 both A MSE 174 A C MSE 151 1_555 A LYS 175 A N LYS 152 1_555 covale 1.327 both A GLN 184 A C GLN 161 1_555 A MSE 185 A N MSE 162 1_555 covale 1.332 both A MSE 185 A C MSE 162 1_555 A TYR 186 A N TYR 163 1_555 covale 1.329 both A ILE 242 A C ILE 219 1_555 A MSE 243 A N MSE 220 1_555 covale 1.330 both A MSE 243 A C MSE 220 1_555 A ARG 244 A N ARG 221 1_555 covale 1.334 both B GLN 106 B C GLN 83 1_555 B MSE 107 B N MSE 84 1_555 covale 1.333 both B MSE 107 B C MSE 84 1_555 B GLU 108 B N GLU 85 1_555 covale 1.325 both B SER 109 B C SER 86 1_555 B MSE 110 B N MSE 87 1_555 covale 1.333 both B MSE 110 B C MSE 87 1_555 B ILE 111 B N ILE 88 1_555 covale 1.340 both B THR 173 B C THR 150 1_555 B MSE 174 B N MSE 151 1_555 covale 1.337 both B MSE 174 B C MSE 151 1_555 B LYS 175 B N LYS 152 1_555 covale 1.341 both B GLN 184 B C GLN 161 1_555 B MSE 185 B N MSE 162 1_555 covale 1.333 both B MSE 185 B C MSE 162 1_555 B TYR 186 B N TYR 163 1_555 covale 1.331 both B ILE 242 B C ILE 219 1_555 B MSE 243 B N MSE 220 1_555 covale 1.328 both B MSE 243 B C MSE 220 1_555 B ARG 244 B N ARG 221 1_555 STRUCTURAL GENOMICS, UNKNOWN FUNCTION HYPOTHETICAL PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION A7B0S2_RUMGN UNP 1 25 A7B0S2 HENEISIKIETYLQEEYGEEFEVLSWNQPKLLPSDNGAIYATCISKNDPKHPFEGSYFNPEEPNSEIEIIYDGYGQRLLA KQMESMIEEAISQAAENYYIQGDIIIPEEWQDIPVEEISQWKNYVDLCNQSNSDYKTLGSAWVYIDASTMKGKTDEEEYQ MYEEVYRDKLGGQALLYVYYLDHKSFEKAEKILEIFTSGDEGSNFEDIIEGQPYFGTIMRYGSDKFDDNLEIFKAAKQGK EQEKYQ 25 270 4GL6 25 270 A7B0S2 A 1 2 247 25 270 4GL6 25 270 A7B0S2 B 1 2 247 1 expression tag GLY 0 4GL6 A A7B0S2 UNP 1 2 expression tag GLY 0 4GL6 B A7B0S2 UNP 1 4 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A PHE 45 A PHE 22 A ASN 51 A ASN 28 A ILE 63 A ILE 40 A SER 69 A SER 46 A PHE 77 A PHE 54 A PHE 82 A PHE 59 A GLU 92 A GLU 69 A TYR 95 A TYR 72 A TYR 122 A TYR 99 A ASP 127 A ASP 104 A GLY 163 A GLY 140 A ASP 170 A ASP 147 A ALA 198 A ALA 175 A LEU 205 A LEU 182 A TYR 238 A TYR 215 A MSE 243 A MSE 220 B PHE 45 B PHE 22 B ASN 51 B ASN 28 B ILE 63 B ILE 40 B SER 69 B SER 46 B PHE 77 B PHE 54 B PHE 82 B PHE 59 B GLU 92 B GLU 69 B TYR 95 B TYR 72 B TYR 122 B TYR 99 B ASP 127 B ASP 104 B THR 161 B THR 138 B ASP 170 B ASP 147 B GLN 197 B GLN 174 B LEU 205 B LEU 182 B TYR 238 B TYR 215 B MSE 243 B MSE 220 BINDING SITE FOR RESIDUE GOL A 301 A GOL 301 Software 4 BINDING SITE FOR RESIDUE GOL A 302 A GOL 302 Software 7 BINDING SITE FOR RESIDUE GOL B 300 B GOL 300 Software 6 A HIS 75 A HIS 52 4 1_555 A GLU 112 A GLU 89 4 1_555 A TYR 122 A TYR 99 4 1_555 A HOH 401 F HOH 4 1_555 A ASN 51 A ASN 28 7 1_555 A GLU 78 A GLU 55 7 1_555 A ASP 224 A ASP 201 7 1_555 B LYS 175 B LYS 152 7 1_555 B GLY 176 B GLY 153 7 1_555 B LYS 177 B LYS 154 7 1_555 B GLU 181 B GLU 158 7 1_555 B HIS 75 B HIS 52 6 1_555 B GLU 112 B GLU 89 6 1_555 B TYR 122 B TYR 99 6 1_555 B TYR 123 B TYR 100 6 1_555 B ILE 124 B ILE 101 6 1_555 B HOH 410 G HOH 6 1_555 5 C 1 2 1