0.040414
0.000000
0.000000
0.000000
0.023875
0.000000
0.000000
0.000000
0.015137
0.00000
0.00000
0.00000
Spingler, B.
Renciuk, D.
Vorlickova, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
24.744
41.885
66.062
C10 H16 N3 O7 P
321.224
n
5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
N
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
O
N
9
N
N
N
10
R
C
N
11
N
C
N
12
S
C
N
13
R
C
N
14
N
O
N
15
N
O
N
16
N
C
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
Y
50
N
N
Y
51
N
C
Y
52
N
N
Y
53
N
C
Y
54
N
C
N
55
N
N
Y
56
N
N
Y
57
N
C
Y
58
N
N
Y
59
N
C
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
N
86
N
N
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
Y
120
N
N
Y
121
N
C
Y
122
N
N
Y
123
N
C
N
124
N
C
N
125
N
O
N
126
N
N
N
127
N
C
N
128
N
N
N
129
N
N
Y
130
N
C
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
P
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
C
N
151
R
C
N
152
N
O
N
153
S
C
N
154
N
O
N
155
N
C
N
156
R
C
N
157
N
N
N
158
N
C
N
159
N
O
N
160
N
N
N
161
N
C
N
162
N
O
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
H
N
183
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
doub
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
doub
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
Y
62
N
sing
Y
63
N
sing
Y
64
N
doub
N
65
N
sing
Y
66
N
sing
Y
67
N
sing
Y
68
N
doub
N
69
N
sing
Y
70
N
doub
N
71
N
sing
N
72
N
sing
Y
73
N
sing
Y
74
N
doub
N
75
N
sing
Y
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
Y
135
N
sing
Y
136
N
sing
Y
137
N
doub
N
138
N
sing
Y
139
N
sing
N
140
N
sing
Y
141
N
doub
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
41
9891
9900
10.1093/nar/gkt738
23963698
Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine.
2013
10.2210/pdb4glg/pdb
pdb_00004glg
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
PIXEL
2012-06-09
DECTRIS PILATUS 2M-F
BARTELS MONOCHROMATOR
SINGLE WAVELENGTH
M
x-ray
1
1.00067
1.0
X06DA
SLS
1.00067
SYNCHROTRON
SLS BEAMLINE X06DA
3677.419
DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5CM)P*GP*CP*G)-3')
2
syn
polymer
18.015
water
88
nat
water
no
yes
(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(5CM)(DG)(DC)(DG)
CGCGAATTCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
1
2.33
47.15
7.0
0.04M sodium cacodylate buffer, 0.08M sodium chloride, 0.012M spermine tetra hydrochloride, 27% MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
9.618
1
19
A
1
B
12
-0.879
A_DC1:DG12_B
1
8.948
0.237
-0.677
-0.219
-9.429
1
19
A
2
B
11
-5.573
A_DG2:DC11_B
2
-10.740
-0.176
0.157
-0.287
-3.968
1
19
A
3
B
10
1.068
A_DC3:DG10_B
3
-7.695
0.145
0.229
-0.181
5.271
1
19
A
4
B
9
0.361
A_DG4:5CM9_B
4
-10.160
-0.167
-0.340
-0.132
7.405
1
20
A
5
B
8
2.748
A_DA5:DT8_B
5
-14.620
0.014
0.043
-0.176
1.516
1
20
A
6
B
7
4.029
A_DA6:DT7_B
6
-14.737
-0.153
0.208
-0.087
-0.398
1
20
A
7
B
6
4.015
A_DT7:DA6_B
7
-15.411
0.024
0.149
-0.155
-3.822
1
20
A
8
B
5
4.621
A_DT8:DA5_B
8
-14.517
-0.012
0.146
-0.073
-13.074
1
19
A
9
B
4
2.893
A_5CM9:DG4_B
9
-12.919
0.226
0.240
-0.030
10.127
1
19
A
10
B
3
0.561
A_DG10:DC3_B
10
-3.613
-0.197
0.477
-0.124
1.815
1
19
A
11
B
2
-2.122
A_DC11:DG2_B
11
-15.651
0.069
0.274
-0.175
13.381
1
19
A
12
B
1
0.044
A_DG12:DC1_B
12
-2.882
-0.395
0.244
-0.143
4.107
38.153
A
A
1
2
-19.015
B
B
12
11
4.091
-12.158
-1.214
-0.219
AA_DC1DG2:DC11DG12_BB
1
-7.024
10.986
35.565
1.663
0.702
3.297
39.197
A
A
2
3
-0.103
B
B
11
10
3.222
-0.069
1.015
0.074
AA_DG2DC3:DG10DC11_BB
2
3.456
-5.158
39.051
0.119
-1.100
2.926
29.436
A
A
3
4
30.779
B
B
10
9
3.177
14.852
-0.390
0.596
AA_DC3DG4:5CM9DG10_BB
3
5.308
-11.000
24.933
-2.051
1.919
3.202
38.588
A
A
4
5
-1.005
B
B
9
8
3.196
-0.663
-0.246
0.105
AA_DG4DA5:DT85CM9_BB
4
-4.441
6.735
38.336
0.239
-0.166
3.334
38.140
A
A
5
6
-4.688
B
B
8
7
3.339
-3.058
0.121
-0.274
AA_DA5DA6:DT7DT8_BB
5
-2.680
4.108
37.931
-0.024
-0.531
3.300
33.111
A
A
6
7
-4.275
B
B
7
6
3.266
-2.434
-0.009
-0.623
AA_DA6DT7:DA6DT7_BB
6
1.049
-1.842
33.008
-0.681
0.193
3.267
37.037
A
A
7
8
-2.909
B
B
6
5
3.256
-1.847
-0.006
-0.313
AA_DT7DT8:DA5DA6_BB
7
0.320
-0.505
36.991
-0.245
0.053
3.446
41.301
A
A
8
9
-5.561
B
B
5
4
3.445
-3.917
0.087
-0.161
AA_DT85CM9:DG4DA5_BB
8
1.233
-1.751
41.105
0.216
0.017
2.769
28.601
A
A
9
10
7.039
B
B
4
3
2.773
3.466
0.570
0.550
AA_5CM9DG10:DC3DG4_BB
9
-2.177
4.422
28.313
0.443
-1.573
3.437
41.757
A
A
10
11
-9.687
B
B
3
2
3.521
-6.874
-1.437
0.530
AA_DG10DC11:DG2DC3_BB
10
-1.388
1.956
41.190
1.517
1.860
3.189
33.757
A
A
11
12
-1.102
B
B
2
1
3.138
-0.640
1.177
0.759
AA_DC11DG12:DC1DG2_BB
11
2.101
-3.621
33.688
1.408
-1.698
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-08-28
1
1
2013-09-04
1
2
2013-12-04
1
3
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
RCSB
Y
RCSB
2012-08-14
REL
REL
HOH
water
32630
Synthetic construct
sample
1DPN
PDB ENTRY 1DPN
PDB
experimental model
HOH
102
2
HOH
HOH
101
A
HOH
110
2
HOH
HOH
102
A
HOH
112
2
HOH
HOH
103
A
HOH
114
2
HOH
HOH
104
A
HOH
115
2
HOH
HOH
105
A
HOH
116
2
HOH
HOH
106
A
HOH
117
2
HOH
HOH
107
A
HOH
121
2
HOH
HOH
108
A
HOH
124
2
HOH
HOH
109
A
HOH
125
2
HOH
HOH
110
A
HOH
127
2
HOH
HOH
111
A
HOH
129
2
HOH
HOH
112
A
HOH
131
2
HOH
HOH
113
A
HOH
132
2
HOH
HOH
114
A
HOH
133
2
HOH
HOH
115
A
HOH
134
2
HOH
HOH
116
A
HOH
136
2
HOH
HOH
117
A
HOH
138
2
HOH
HOH
118
A
HOH
139
2
HOH
HOH
119
A
HOH
140
2
HOH
HOH
120
A
HOH
143
2
HOH
HOH
121
A
HOH
144
2
HOH
HOH
122
A
HOH
147
2
HOH
HOH
123
A
HOH
150
2
HOH
HOH
124
A
HOH
152
2
HOH
HOH
125
A
HOH
155
2
HOH
HOH
126
A
HOH
156
2
HOH
HOH
127
A
HOH
159
2
HOH
HOH
128
A
HOH
164
2
HOH
HOH
129
A
HOH
166
2
HOH
HOH
130
A
HOH
167
2
HOH
HOH
131
A
HOH
168
2
HOH
HOH
132
A
HOH
169
2
HOH
HOH
133
A
HOH
171
2
HOH
HOH
134
A
HOH
174
2
HOH
HOH
135
A
HOH
175
2
HOH
HOH
136
A
HOH
176
2
HOH
HOH
137
A
HOH
178
2
HOH
HOH
138
A
HOH
179
2
HOH
HOH
139
A
HOH
180
2
HOH
HOH
140
A
HOH
184
2
HOH
HOH
141
A
HOH
186
2
HOH
HOH
142
A
HOH
188
2
HOH
HOH
143
A
HOH
109
2
HOH
HOH
144
A
HOH
130
2
HOH
HOH
145
A
HOH
101
2
HOH
HOH
101
B
HOH
103
2
HOH
HOH
102
B
HOH
104
2
HOH
HOH
103
B
HOH
105
2
HOH
HOH
104
B
HOH
106
2
HOH
HOH
105
B
HOH
107
2
HOH
HOH
106
B
HOH
108
2
HOH
HOH
107
B
HOH
111
2
HOH
HOH
108
B
HOH
113
2
HOH
HOH
109
B
HOH
118
2
HOH
HOH
110
B
HOH
119
2
HOH
HOH
111
B
HOH
120
2
HOH
HOH
112
B
HOH
122
2
HOH
HOH
113
B
HOH
123
2
HOH
HOH
114
B
HOH
126
2
HOH
HOH
115
B
HOH
128
2
HOH
HOH
116
B
HOH
135
2
HOH
HOH
117
B
HOH
137
2
HOH
HOH
118
B
HOH
141
2
HOH
HOH
119
B
HOH
142
2
HOH
HOH
120
B
HOH
145
2
HOH
HOH
121
B
HOH
146
2
HOH
HOH
122
B
HOH
148
2
HOH
HOH
123
B
HOH
149
2
HOH
HOH
124
B
HOH
151
2
HOH
HOH
125
B
HOH
153
2
HOH
HOH
126
B
HOH
154
2
HOH
HOH
127
B
HOH
157
2
HOH
HOH
128
B
HOH
158
2
HOH
HOH
129
B
HOH
160
2
HOH
HOH
130
B
HOH
161
2
HOH
HOH
131
B
HOH
162
2
HOH
HOH
132
B
HOH
163
2
HOH
HOH
133
B
HOH
165
2
HOH
HOH
134
B
HOH
170
2
HOH
HOH
135
B
HOH
172
2
HOH
HOH
136
B
HOH
173
2
HOH
HOH
137
B
HOH
177
2
HOH
HOH
138
B
HOH
181
2
HOH
HOH
139
B
HOH
182
2
HOH
HOH
140
B
HOH
183
2
HOH
HOH
141
B
HOH
185
2
HOH
HOH
142
B
HOH
187
2
HOH
HOH
143
B
DC
1
n
1
DC
1
A
DG
2
n
2
DG
2
A
DC
3
n
3
DC
3
A
DG
4
n
4
DG
4
A
DA
5
n
5
DA
5
A
DA
6
n
6
DA
6
A
DT
7
n
7
DT
7
A
DT
8
n
8
DT
8
A
5CM
9
n
9
5CM
9
A
DG
10
n
10
DG
10
A
DC
11
n
11
DC
11
A
DG
12
n
12
DG
12
A
DC
1
n
1
DC
1
B
DG
2
n
2
DG
2
B
DC
3
n
3
DC
3
B
DG
4
n
4
DG
4
B
DA
5
n
5
DA
5
B
DA
6
n
6
DA
6
B
DT
7
n
7
DT
7
B
DT
8
n
8
DT
8
B
5CM
9
n
9
5CM
9
B
DG
10
n
10
DG
10
B
DC
11
n
11
DC
11
B
DG
12
n
12
DG
12
B
0.215
0.222
0.213
0.220
0.273
0.287
387
458
5.758
6.012
6721
author_and_software_defined_assembly
PISA
2
dimeric
2420
4
4250
A
5CM
9
A
5CM
9
DC
B
5CM
9
B
5CM
9
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-5.30
0.80
102.40
97.10
A
A
A
C3'
C2'
C1'
DC
DC
DC
1
1
1
N
1
-5.15
0.70
108.00
102.85
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
2.59
0.30
108.30
110.89
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
-4.96
0.70
108.00
103.04
A
A
A
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
-4.70
0.70
108.00
103.30
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
7.28
1.20
119.70
126.98
A
A
A
C3'
O3'
P
DT
DT
DT
7
7
8
Y
1
8.45
1.40
114.30
122.75
A
A
A
N1
C1'
C2'
DT
DT
DT
8
8
8
N
1
-8.68
0.70
108.00
99.32
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
-5.31
0.80
102.40
97.09
A
A
A
C3'
C2'
C1'
DG
DG
DG
10
10
10
N
1
-5.38
0.70
108.00
102.62
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
-4.86
0.70
108.00
103.14
B
B
B
O4'
C1'
N9
DG
DG
DG
2
2
2
N
1
9.18
1.20
119.70
128.88
B
B
B
C3'
O3'
P
DG
DG
DA
4
4
5
Y
1
10.08
1.20
119.70
129.78
B
B
B
C3'
O3'
P
DA
DA
DA
5
5
6
Y
1
-4.21
0.70
108.00
103.79
B
B
B
O4'
C1'
N9
DA
DA
DA
6
6
6
N
1
10.53
1.20
119.70
130.23
B
B
B
C3'
O3'
P
DA
DA
DT
6
6
7
Y
1
-5.55
0.70
108.00
102.45
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
8.55
1.40
114.30
122.85
B
B
B
N1
C1'
C2'
DT
DT
DT
8
8
8
N
1
-8.53
0.70
108.00
99.47
B
B
B
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
-6.16
0.80
102.40
96.24
B
B
B
C3'
C2'
C1'
DG
DG
DG
10
10
10
N
ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY ?
0.287
0.220
0.222
0.220
1.72
41.9
4774
458
7618
10807
6.012
97.9
RANDOM
1
FREE R
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 1DPN
ENGH AND HUBER
1
0.
558.6
1.72
41.9
88
576
0
488
0
0.0085
0.0300
0.0000
0.0164
0.0000
0.0070
0.0077
0.0074
0.0274
0.0000
1.72
41.92
4GLG
7618
0.024
0.015
1
28.99
3.65
97.9
0.213
1.72
1.82
6.94
1
3.75
96.1
data collection
RemDAq
phasing
PHASER
refinement
SHELXL-97
data reduction
XDS
data scaling
XDS
DNA dodecamer containing 5-methyl cytosine
1
N
N
1
N
N
2
N
N
2
N
N
covale
1.615
both
A
DT
8
A
O3'
DT
8
1_555
A
5CM
9
A
P
5CM
9
1_555
covale
1.611
both
A
5CM
9
A
O3'
5CM
9
1_555
A
DG
10
A
P
DG
10
1_555
covale
1.602
both
B
DT
8
B
O3'
DT
8
1_555
B
5CM
9
B
P
5CM
9
1_555
covale
1.616
both
B
5CM
9
B
O3'
5CM
9
1_555
B
DG
10
B
P
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
12
B
N1
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
12
B
O6
DG
12
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
12
B
N2
DG
12
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
10
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
10
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
10
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
5CM
9
B
N3
5CM
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
5CM
9
B
O2
5CM
9
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
5CM
9
B
N4
5CM
9
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
8
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
8
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
7
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
7
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
6
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
6
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
5
B
N1
DA
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
5
B
N6
DA
5
1_555
hydrog
WATSON-CRICK
A
5CM
9
A
N3
5CM
9
1_555
B
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
5CM
9
A
N4
5CM
9
1_555
B
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
5CM
9
A
O2
5CM
9
1_555
B
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
3
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
3
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
3
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
2
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
2
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
2
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N1
DG
12
1_555
B
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
N2
DG
12
1_555
B
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
12
A
O6
DG
12
1_555
B
DC
1
B
N4
DC
1
1_555
DNA
B-DNA dodecamer, epigenetics, 5-methyl cytosine, DNA
4GLG
PDB
1
4GLG
1
12
4GLG
1
12
4GLG
A
1
1
12
1
12
4GLG
1
12
4GLG
B
1
1
12
19
P 21 21 21