0.019944
0.000000
0.000000
0.000000
0.018345
0.000000
0.000000
0.000000
0.015567
0.00000
0.00000
0.00000
Samson, J.
Spinelli, S.
Cambillau, C.
Moineau, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
50.140
54.510
64.240
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
O
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
R
C
N
323
N
O
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
N
346
N
O
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
UK
Mol.Microbiol.
MOMIEE
2007
0950-382X
87
756
768
10.1111/mmi.12129
23279123
Structure and activity of AbiQ, a lactococcal endoribonuclease belonging to the type III toxin-antitoxin system.
2013
10.2210/pdb4glk/pdb
pdb_00004glk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
PIXEL
2011-10-14
PSI PILATUS 6M
channel cut Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9791
1.0
PROXIMA 1
SOLEIL
0.9791
SYNCHROTRON
SOLEIL BEAMLINE PROXIMA 1
20308.732
AbiQ
3.1.-.-
UNP residues 13-183
S51L
1
man
polymer
92.094
GLYCEROL
3
syn
non-polymer
18.015
water
69
nat
water
no
no
GTLRFFTVTDEYIAYLRKFESKVHYQYENNASTYVGVVLKKNDFNYFIPLLSYKKGNPEKDKAMKKRSRIVTRLFEIGNI
NNPLGYLLHHNMIPVPDSELIPLPLDLKKPKHKMMQKQLIYMKSISEKIENKSEVVYRKAAHEKDGYYLKFSCDFKLLEA
KATLYSKKSTFQ
GTLRFFTVTDEYIAYLRKFESKVHYQYENNASTYVGVVLKKNDFNYFIPLLSYKKGNPEKDKAMKKRSRIVTRLFEIGNI
NNPLGYLLHHNMIPVPDSELIPLPLDLKKPKHKMMQKQLIYMKSISEKIENKSEVVYRKAAHEKDGYYLKFSCDFKLLEA
KATLYSKKSTFQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
abiQ
1358
Lactococcus lactis
83333
Escherichia coli
K12
plasmid
pDEST17
1
2.16
43.09
VAPOR DIFFUSION, SITTING DROP
6.0
buffer: 1 M potassium/sodium tartrate, 0.1 M MES, pH 6.0, drop: 200 nL 4.6 mg/mL protein + 100 nL buffer, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-01-16
1
1
2013-02-20
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-08-14
REL
REL
GOL
GLYCEROL
HOH
water
2XDD
PDB ENTRY 2XDD
PDB
experimental model
GOL
1
2
GOL
GOL
201
A
GOL
2
2
GOL
GOL
202
A
GOL
3
2
GOL
GOL
203
A
HOH
1
3
HOH
HOH
301
A
HOH
2
3
HOH
HOH
302
A
HOH
3
3
HOH
HOH
303
A
HOH
4
3
HOH
HOH
304
A
HOH
5
3
HOH
HOH
305
A
HOH
6
3
HOH
HOH
306
A
HOH
7
3
HOH
HOH
307
A
HOH
8
3
HOH
HOH
308
A
HOH
9
3
HOH
HOH
309
A
HOH
10
3
HOH
HOH
310
A
HOH
11
3
HOH
HOH
311
A
HOH
12
3
HOH
HOH
312
A
HOH
13
3
HOH
HOH
313
A
HOH
14
3
HOH
HOH
314
A
HOH
15
3
HOH
HOH
315
A
HOH
16
3
HOH
HOH
316
A
HOH
17
3
HOH
HOH
317
A
HOH
18
3
HOH
HOH
318
A
HOH
19
3
HOH
HOH
319
A
HOH
20
3
HOH
HOH
320
A
HOH
21
3
HOH
HOH
321
A
HOH
22
3
HOH
HOH
322
A
HOH
23
3
HOH
HOH
323
A
HOH
24
3
HOH
HOH
324
A
HOH
25
3
HOH
HOH
325
A
HOH
26
3
HOH
HOH
326
A
HOH
27
3
HOH
HOH
327
A
HOH
28
3
HOH
HOH
328
A
HOH
29
3
HOH
HOH
329
A
HOH
30
3
HOH
HOH
330
A
HOH
31
3
HOH
HOH
331
A
HOH
32
3
HOH
HOH
332
A
HOH
33
3
HOH
HOH
333
A
HOH
34
3
HOH
HOH
334
A
HOH
35
3
HOH
HOH
335
A
HOH
36
3
HOH
HOH
336
A
HOH
37
3
HOH
HOH
337
A
HOH
38
3
HOH
HOH
338
A
HOH
39
3
HOH
HOH
339
A
HOH
40
3
HOH
HOH
340
A
HOH
41
3
HOH
HOH
341
A
HOH
42
3
HOH
HOH
342
A
HOH
43
3
HOH
HOH
343
A
HOH
44
3
HOH
HOH
344
A
HOH
45
3
HOH
HOH
345
A
HOH
46
3
HOH
HOH
346
A
HOH
47
3
HOH
HOH
347
A
HOH
48
3
HOH
HOH
348
A
HOH
49
3
HOH
HOH
349
A
HOH
50
3
HOH
HOH
350
A
HOH
51
3
HOH
HOH
351
A
HOH
52
3
HOH
HOH
352
A
HOH
53
3
HOH
HOH
353
A
HOH
54
3
HOH
HOH
354
A
HOH
55
3
HOH
HOH
355
A
HOH
56
3
HOH
HOH
356
A
HOH
57
3
HOH
HOH
357
A
HOH
58
3
HOH
HOH
358
A
HOH
59
3
HOH
HOH
359
A
HOH
60
3
HOH
HOH
360
A
HOH
61
3
HOH
HOH
361
A
HOH
62
3
HOH
HOH
362
A
HOH
63
3
HOH
HOH
363
A
HOH
64
3
HOH
HOH
364
A
HOH
65
3
HOH
HOH
365
A
HOH
66
3
HOH
HOH
366
A
HOH
67
3
HOH
HOH
367
A
HOH
68
3
HOH
HOH
368
A
HOH
69
3
HOH
HOH
369
A
ALA
1
n
1
GLY
1
A
THR
2
n
2
THR
2
A
LEU
3
n
3
LEU
3
A
ARG
4
n
4
ARG
4
A
PHE
5
n
5
PHE
5
A
PHE
6
n
6
PHE
6
A
THR
7
n
7
THR
7
A
VAL
8
n
8
VAL
8
A
THR
9
n
9
THR
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
TYR
12
n
12
TYR
12
A
ILE
13
n
13
ILE
13
A
ALA
14
n
14
ALA
14
A
TYR
15
n
15
TYR
15
A
LEU
16
n
16
LEU
16
A
ARG
17
n
17
ARG
17
A
LYS
18
n
18
LYS
18
A
PHE
19
n
19
PHE
19
A
GLU
20
n
20
GLU
20
A
SER
21
n
21
SER
21
A
LYS
22
n
22
LYS
22
A
VAL
23
n
23
VAL
23
A
HIS
24
n
24
HIS
24
A
TYR
25
n
25
TYR
25
A
GLN
26
n
26
GLN
26
A
TYR
27
n
27
TYR
27
A
GLU
28
n
28
GLU
28
A
ASN
29
n
29
ASN
29
A
ASN
30
n
30
ASN
30
A
ALA
31
n
31
ALA
31
A
SER
32
n
32
SER
32
A
THR
33
n
33
THR
33
A
TYR
34
n
34
TYR
34
A
VAL
35
n
35
VAL
35
A
GLY
36
n
36
GLY
36
A
VAL
37
n
37
VAL
37
A
VAL
38
n
38
VAL
38
A
LEU
39
n
39
LEU
39
A
LYS
40
n
40
LYS
40
A
LYS
41
n
41
LYS
41
A
ASN
42
n
42
ASN
42
A
ASP
43
n
43
ASP
43
A
PHE
44
n
44
PHE
44
A
ASN
45
n
45
ASN
45
A
TYR
46
n
46
TYR
46
A
PHE
47
n
47
PHE
47
A
ILE
48
n
48
ILE
48
A
PRO
49
n
49
PRO
49
A
LEU
50
n
50
LEU
50
A
LEU
51
n
51
LEU
51
A
SER
52
n
52
SER
52
A
TYR
53
n
53
TYR
53
A
n
54
54
A
n
55
55
A
n
56
56
A
ASN
57
n
57
ASN
57
A
PRO
58
n
58
PRO
58
A
GLU
59
n
59
GLU
59
A
LYS
60
n
60
LYS
60
A
ASP
61
n
61
ASP
61
A
LYS
62
n
62
LYS
62
A
ALA
63
n
63
ALA
63
A
MET
64
n
64
MET
64
A
LYS
65
n
65
LYS
65
A
LYS
66
n
66
LYS
66
A
ARG
67
n
67
ARG
67
A
SER
68
n
68
SER
68
A
ARG
69
n
69
ARG
69
A
ILE
70
n
70
ILE
70
A
VAL
71
n
71
VAL
71
A
THR
72
n
72
THR
72
A
ARG
73
n
73
ARG
73
A
LEU
74
n
74
LEU
74
A
PHE
75
n
75
PHE
75
A
GLU
76
n
76
GLU
76
A
ILE
77
n
77
ILE
77
A
GLY
78
n
78
GLY
78
A
ASN
79
n
79
ASN
79
A
ILE
80
n
80
ILE
80
A
ASN
81
n
81
ASN
81
A
ASN
82
n
82
ASN
82
A
PRO
83
n
83
PRO
83
A
LEU
84
n
84
LEU
84
A
GLY
85
n
85
GLY
85
A
TYR
86
n
86
TYR
86
A
LEU
87
n
87
LEU
87
A
LEU
88
n
88
LEU
88
A
HIS
89
n
89
HIS
89
A
HIS
90
n
90
HIS
90
A
ASN
91
n
91
ASN
91
A
MET
92
n
92
MET
92
A
ILE
93
n
93
ILE
93
A
PRO
94
n
94
PRO
94
A
VAL
95
n
95
VAL
95
A
PRO
96
n
96
PRO
96
A
ASP
97
n
97
ASP
97
A
SER
98
n
98
SER
98
A
GLU
99
n
99
GLU
99
A
LEU
100
n
100
LEU
100
A
ILE
101
n
101
ILE
101
A
PRO
102
n
102
PRO
102
A
LEU
103
n
103
LEU
103
A
PRO
104
n
104
PRO
104
A
LEU
105
n
105
LEU
105
A
ASP
106
n
106
ASP
106
A
LEU
107
n
107
LEU
107
A
LYS
108
n
108
LYS
108
A
LYS
109
n
109
LYS
109
A
PRO
110
n
110
PRO
110
A
LYS
111
n
111
LYS
111
A
HIS
112
n
112
HIS
112
A
LYS
113
n
113
LYS
113
A
MET
114
n
114
MET
114
A
MET
115
n
115
MET
115
A
GLN
116
n
116
GLN
116
A
LYS
117
n
117
LYS
117
A
GLN
118
n
118
GLN
118
A
LEU
119
n
119
LEU
119
A
ILE
120
n
120
ILE
120
A
TYR
121
n
121
TYR
121
A
MET
122
n
122
MET
122
A
LYS
123
n
123
LYS
123
A
SER
124
n
124
SER
124
A
ILE
125
n
125
ILE
125
A
SER
126
n
126
SER
126
A
GLU
127
n
127
GLU
127
A
LYS
128
n
128
LYS
128
A
ILE
129
n
129
ILE
129
A
GLU
130
n
130
GLU
130
A
ASN
131
n
131
ASN
131
A
LYS
132
n
132
LYS
132
A
SER
133
n
133
SER
133
A
GLU
134
n
134
GLU
134
A
VAL
135
n
135
VAL
135
A
VAL
136
n
136
VAL
136
A
TYR
137
n
137
TYR
137
A
ARG
138
n
138
ARG
138
A
LYS
139
n
139
LYS
139
A
ALA
140
n
140
ALA
140
A
ALA
141
n
141
ALA
141
A
HIS
142
n
142
HIS
142
A
GLU
143
n
143
GLU
143
A
LYS
144
n
144
LYS
144
A
ASP
145
n
145
ASP
145
A
GLY
146
n
146
GLY
146
A
TYR
147
n
147
TYR
147
A
TYR
148
n
148
TYR
148
A
LEU
149
n
149
LEU
149
A
LYS
150
n
150
LYS
150
A
PHE
151
n
151
PHE
151
A
SER
152
n
152
SER
152
A
CYS
153
n
153
CYS
153
A
ASP
154
n
154
ASP
154
A
PHE
155
n
155
PHE
155
A
LYS
156
n
156
LYS
156
A
LEU
157
n
157
LEU
157
A
LEU
158
n
158
LEU
158
A
GLU
159
n
159
GLU
159
A
ALA
160
n
160
ALA
160
A
LYS
161
n
161
LYS
161
A
ALA
162
n
162
ALA
162
A
THR
163
n
163
THR
163
A
LEU
164
n
164
LEU
164
A
TYR
165
n
165
TYR
165
A
SER
166
n
166
SER
166
A
LYS
167
n
167
LYS
167
A
LYS
168
n
168
LYS
168
A
n
169
169
A
n
170
170
A
n
171
171
A
n
172
172
A
0.5346
-0.1421
0.1281
0.0035
-0.0091
0.1401
0.0034
0.0205
-0.0105
0.0346
-0.0029
-0.0111
0.0164
-0.0004
-0.0005
-0.0153
-0.0178
0.0063
0.0060
-0.0282
-0.0027
refined
-4.2370
9.7849
-8.4216
X-RAY DIFFRACTION
0.1613
0.0871
-0.0568
0.3875
-0.1545
0.3830
-0.0029
0.0161
0.0139
0.0236
-0.0157
0.0000
-0.0024
-0.0143
0.0186
0.0082
-0.0038
0.0308
-0.0168
-0.0191
0.0187
refined
-11.6035
12.1350
-3.6199
X-RAY DIFFRACTION
0.1406
-0.0553
-0.3807
0.0000
-0.4888
0.3075
-0.0004
-0.0013
-0.0027
-0.0019
0.0050
-0.0108
-0.0077
0.0019
-0.0045
-0.0071
0.0615
-0.0127
0.0209
0.0126
0.0115
refined
4.6029
15.8531
-10.3077
X-RAY DIFFRACTION
0.1954
0.3321
-0.0618
0.3649
0.8137
0.2286
-0.0020
0.0201
0.0047
-0.0042
0.0214
0.0075
0.0064
-0.0228
-0.0194
-0.0081
0.0079
-0.0156
-0.0048
-0.0096
0.0087
refined
-7.9765
19.0957
-13.6104
X-RAY DIFFRACTION
0.0636
-0.0439
0.0587
0.0000
-0.1771
0.0003
0.0000
-0.0023
0.0025
0.0052
-0.0039
0.0049
0.0003
-0.0081
0.0039
-0.0243
0.0129
-0.0394
0.0163
0.0223
0.0010
refined
-14.6242
31.1730
-12.7675
X-RAY DIFFRACTION
0.3186
0.4046
0.0407
0.0410
-0.4669
0.1217
0.0061
0.0066
0.0020
-0.0054
-0.0047
0.0243
-0.0076
0.0030
-0.0014
-0.0198
-0.0051
-0.0229
0.0256
0.0380
-0.0036
refined
-8.3530
27.3597
-21.7348
X-RAY DIFFRACTION
0.2875
0.0482
-0.3700
0.3091
-0.1493
0.2779
0.0021
-0.0023
0.0168
-0.0208
-0.0072
0.0173
-0.0135
-0.0042
0.0051
-0.0233
0.0069
0.0045
0.0141
0.0229
0.0057
refined
-9.1418
24.1527
-15.8550
X-RAY DIFFRACTION
0.0817
-0.5586
0.0298
0.0000
0.3223
0.0341
-0.0039
0.0036
0.0110
0.0148
-0.0004
-0.0137
0.0133
0.0053
0.0043
0.0018
0.0183
-0.0318
-0.0219
-0.0305
0.0214
refined
-1.4932
7.3490
-10.2771
X-RAY DIFFRACTION
0.3186
0.1042
0.3329
0.3591
-0.1747
0.0000
0.0009
0.0059
-0.0002
0.0073
0.0005
0.0118
-0.0041
-0.0190
-0.0014
-0.0066
-0.0060
-0.0793
-0.0135
-0.0113
0.0399
refined
-13.7104
10.3151
-25.7781
X-RAY DIFFRACTION
0.0737
0.1287
-0.1610
0.0018
-0.4035
0.2394
0.0048
-0.0021
-0.0018
-0.0368
0.0023
0.0019
0.0030
0.0105
-0.0071
0.0122
-0.0126
-0.0130
-0.0280
0.0161
0.0070
refined
-2.2191
21.6364
-23.4358
X-RAY DIFFRACTION
0.0656
-0.1076
0.2472
0.2088
-0.0807
0.0209
-0.0012
-0.0013
-0.0169
0.0067
0.0092
-0.0094
0.0007
0.0146
-0.0079
-0.0263
-0.0124
-0.0141
-0.0145
0.0181
0.0527
refined
4.5887
27.1871
-7.8214
X-RAY DIFFRACTION
0.0465
-0.1037
0.5807
0.0214
0.1399
0.0181
0.0023
-0.0009
0.0069
0.0200
0.0050
-0.0118
-0.0004
0.0032
-0.0073
-0.0077
0.0234
-0.0404
0.0221
-0.0192
-0.0246
refined
-2.0543
29.2585
-1.0962
X-RAY DIFFRACTION
0.0070
0.2251
0.6630
0.1256
-0.2637
0.1130
-0.0017
-0.0110
-0.0170
0.0114
0.0010
-0.0034
0.0040
0.0073
0.0007
0.0305
0.0221
-0.1095
0.0120
0.0192
0.0014
refined
3.5622
10.5932
2.3426
X-RAY DIFFRACTION
A
1
A
17
X-RAY DIFFRACTION
1
{A|1 - A|17}
A
18
A
33
X-RAY DIFFRACTION
2
{A|18 - A|33}
A
34
A
44
X-RAY DIFFRACTION
3
{A|34 - A|44}
A
45
A
57
X-RAY DIFFRACTION
4
{A|45 - A|57}
A
58
A
68
X-RAY DIFFRACTION
5
{A|58 - A|68}
A
69
A
80
X-RAY DIFFRACTION
6
{A|69 - A|80}
A
81
A
92
X-RAY DIFFRACTION
7
{A|81 - A|92}
A
93
A
104
X-RAY DIFFRACTION
8
{A|93 - A|104}
A
105
A
116
X-RAY DIFFRACTION
9
{A|105 - A|116}
A
117
A
129
X-RAY DIFFRACTION
10
{A|117 - A|129}
A
130
A
142
X-RAY DIFFRACTION
11
{A|130 - A|142}
A
143
A
155
X-RAY DIFFRACTION
12
{A|143 - A|155}
A
156
A
168
X-RAY DIFFRACTION
13
{A|156 - A|168}
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
74
A
N
LEU
74
A
O
GLY
85
A
O
GLY
85
A
O
TYR
86
A
O
TYR
86
A
N
LEU
51
A
N
LEU
51
A
N
PHE
47
A
N
PHE
47
A
O
ILE
93
A
O
ILE
93
A
N
LEU
74
A
N
LEU
74
A
O
GLY
85
A
O
GLY
85
A
O
TYR
86
A
O
TYR
86
A
N
LEU
51
A
N
LEU
51
A
O
LEU
50
A
O
LEU
50
A
N
THR
33
A
N
THR
33
A
O
TYR
34
A
O
TYR
34
A
N
PHE
6
A
N
PHE
6
A
N
THR
7
A
N
THR
7
A
O
ILE
101
A
O
ILE
101
1
A
CG
LYS
41
A
CG
LYS
41
1
Y
1
A
CD
LYS
41
A
CD
LYS
41
1
Y
1
A
CE
LYS
41
A
CE
LYS
41
1
Y
1
A
NZ
LYS
41
A
NZ
LYS
41
1
Y
1
A
CG
ASN
57
A
CG
ASN
57
1
Y
1
A
OD1
ASN
57
A
OD1
ASN
57
1
Y
1
A
ND2
ASN
57
A
ND2
ASN
57
1
Y
1
A
CG
ASP
61
A
CG
ASP
61
1
Y
1
A
OD1
ASP
61
A
OD1
ASP
61
1
Y
1
A
OD2
ASP
61
A
OD2
ASP
61
1
Y
1
A
CG
LYS
62
A
CG
LYS
62
1
Y
1
A
CD
LYS
62
A
CD
LYS
62
1
Y
1
A
CE
LYS
62
A
CE
LYS
62
1
Y
1
A
NZ
LYS
62
A
NZ
LYS
62
1
Y
1
A
CG
LYS
66
A
CG
LYS
66
1
Y
1
A
CD
LYS
66
A
CD
LYS
66
1
Y
1
A
CE
LYS
66
A
CE
LYS
66
1
Y
1
A
NZ
LYS
66
A
NZ
LYS
66
1
Y
1
A
CG
LYS
108
A
CG
LYS
108
1
Y
1
A
CD
LYS
108
A
CD
LYS
108
1
Y
1
A
CE
LYS
108
A
CE
LYS
108
1
Y
1
A
NZ
LYS
108
A
NZ
LYS
108
1
Y
1
A
LYS
54
A
LYS
54
1
Y
1
A
LYS
55
A
LYS
55
1
Y
1
A
GLY
56
A
GLY
56
1
Y
1
A
SER
169
A
SER
169
1
Y
1
A
THR
170
A
THR
170
1
Y
1
A
PHE
171
A
PHE
171
1
Y
1
A
GLN
172
A
GLN
172
1
Y
1
A
GLU
28
37.87
-89.48
1
A
PRO
58
-39.10
-16.18
1
A
ASN
79
-167.40
53.23
1
A
LEU
88
-102.89
77.48
38.47
6.2090
0.0000
0.0000
5.4018
0.0000
-11.6108
0.9300
0.9239
0.2232
0.1937
0.1958
0.1958
2.16
27.67
694
9880
9880
7.02
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 2XDD
Engh & Huber
0.272
2.16
27.67
69
1440
18
0
1353
0.009
1397
HARMONIC
2.00
1.18
1876
HARMONIC
2.00
0
493
SINUSOIDAL
2.00
0
28
HARMONIC
2.00
0
195
HARMONIC
5.00
0
1397
HARMONIC
20.00
3.77
23.96
0
177
SEMIHARMONIC
5.00
0
1651
SEMIHARMONIC
4.00
0.3178
0.2274
0.2327
2.42
173
2561
2734
2734
5
6.33
35.49
2.16
45
4GLK
9880
9880
0
0
0.090
1
17.1
13.7
99.7
0.6
2.16
2.22
3.7
753
1
13.1
99.6
data collection
DNA
phasing
MOLREP
refinement
BUSTER
2.9.2
data reduction
XDS
data scaling
XSCALE
Structure and activity of AbiQ, a lactococcal anti-phage endoribonuclease belonging to the type-III toxin-antitoxin system
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
A
THR
9
A
THR
9
HELX_P
A
ARG
17
A
ARG
17
1
1
9
A
PRO
58
A
PRO
58
HELX_P
A
ARG
67
A
ARG
67
1
2
10
A
HIS
90
A
HIS
90
HELX_P
A
MET
92
A
MET
92
5
3
3
A
PRO
96
A
PRO
96
HELX_P
A
SER
98
A
SER
98
5
4
3
A
LYS
109
A
LYS
109
HELX_P
A
ILE
125
A
ILE
125
1
5
17
A
ILE
125
A
ILE
125
HELX_P
A
HIS
142
A
HIS
142
1
6
18
A
ASP
145
A
ASP
145
HELX_P
A
SER
152
A
SER
152
1
7
8
A
ASP
154
A
ASP
154
HELX_P
A
LYS
167
A
LYS
167
1
8
14
HYDROLASE
Alpha Beta, endonuclease, RNA antiQ, HYDROLASE
A
GLY
36
A
GLY
36
1
A
VAL
37
A
VAL
37
-1.47
A
LYS
41
A
LYS
41
1
A
ASN
42
A
ASN
42
-5.24
Q9ZJ19_9LACT
UNP
1
13
Q9ZJ19
TLRFFTVTDEYIAYLRKFESKVHYQYENNASTYVGVVLKKNDFNYFIPLSSYKKGNPEKDKAMKKRSRIVTRLFEIGNIN
NPLGYLLHHNMIPVPDSELIPLPLDLKKPKHKMMQKQLIYMKSISEKIENKSEVVYRKAAHEKDGYYLKFSCDFKLLEAK
ATLYSKKSTFQ
13
183
4GLK
2
172
Q9ZJ19
A
1
2
172
1
expression tag
GLY
1
4GLK
A
Q9ZJ19
UNP
1
1
SER
engineered mutation
LEU
51
4GLK
A
Q9ZJ19
UNP
62
51
4
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
71
A
VAL
71
A
GLU
76
A
GLU
76
A
ASN
79
A
ASN
79
A
LEU
88
A
LEU
88
A
ASN
45
A
ASN
45
A
SER
52
A
SER
52
A
ILE
93
A
ILE
93
A
PRO
94
A
PRO
94
A
VAL
71
A
VAL
71
A
GLU
76
A
GLU
76
A
ASN
79
A
ASN
79
A
LEU
88
A
LEU
88
A
ASN
45
A
ASN
45
A
SER
52
A
SER
52
A
THR
33
A
THR
33
A
LYS
40
A
LYS
40
A
ARG
4
A
ARG
4
A
VAL
8
A
VAL
8
A
LEU
100
A
LEU
100
A
PRO
102
A
PRO
102
BINDING SITE FOR RESIDUE GOL A 201
A
GOL
201
Software
6
BINDING SITE FOR RESIDUE GOL A 202
A
GOL
202
Software
7
BINDING SITE FOR RESIDUE GOL A 203
A
GOL
203
Software
9
A
ARG
73
A
ARG
73
6
3_544
A
PHE
75
A
PHE
75
6
3_544
A
ASP
97
A
ASP
97
6
1_555
A
TYR
121
A
TYR
121
6
3_544
A
LYS
128
A
LYS
128
6
3_544
A
GOL
203
D
GOL
6
1_555
A
LEU
3
A
LEU
3
7
1_555
A
ARG
4
A
ARG
4
7
1_555
A
ARG
69
A
ARG
69
7
3_544
A
LEU
119
A
LEU
119
7
1_555
A
LYS
123
A
LYS
123
7
1_555
A
LYS
139
A
LYS
139
7
3_544
A
TYR
148
A
TYR
148
7
3_544
A
ARG
4
A
ARG
4
9
1_555
A
PHE
6
A
PHE
6
9
1_555
A
SER
68
A
SER
68
9
3_544
A
PRO
102
A
PRO
102
9
1_555
A
LYS
128
A
LYS
128
9
3_544
A
LYS
132
A
LYS
132
9
3_544
A
GOL
201
B
GOL
9
1_555
A
HOH
346
E
HOH
9
3_544
A
HOH
368
E
HOH
9
1_555
19
P 21 21 21