0.021259 0.000000 0.000000 0.000000 0.021259 0.000000 0.000000 0.000000 0.007939 0.000000 0.000000 0.000000 Burgie, E.S. Walker, J.M. Phillips Jr., G.N. Vierstra, R.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 47.040 47.040 125.966 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C33 H42 N4 O6 590.710 Phycoviolobilin, blue light-absorbing form 3-[5-[(3-ethyl-4-methyl-5-oxidanylidene-1,2-dihydropyrrol-2-yl)methyl]-2-[[5-[(Z)-(4-ethyl-3-methyl-5-oxidanylidene-pyr rol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N C N 392 N C N 393 N C N 394 N C N 395 N C N 396 N C N 397 N O N 398 N N N 399 R C N 400 N C Y 401 N C Y 402 N C N 403 N C Y 404 N C Y 405 N C N 406 N C Y 407 N C Y 408 N C N 409 N C N 410 N C N 411 N C N 412 N O N 413 N O Y 414 N C Y 415 N C Y 416 N N N 417 N C N 418 N C N 419 N N N 420 N C N 421 N O N 422 N C N 423 N C N 424 N C N 425 N C N 426 N C N 427 N C Y 428 N N N 429 N C N 430 N C N 431 N C N 432 N O N 433 N O N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N doub N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N doub N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing Y 398 N sing N 399 N sing Y 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing Y 405 N sing Y 406 N doub Y 407 N sing N 408 N sing N 409 N sing N 410 N sing Y 411 N sing N 412 N sing Y 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N doub Y 424 N sing Y 425 N doub N 426 N sing Y 427 N sing N 428 N sing N 429 N sing N 430 Z doub N 431 N sing N 432 N sing N 433 N sing N 434 N doub N 435 N doub N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing UK Structure STRUE6 2005 0969-2126 21 88 97 10.1016/j.str.2012.11.001 23219880 A Photo-Labile Thioether Linkage to Phycoviolobilin Provides the Foundation for the Blue/Green Photocycles in DXCF-Cyanobacteriochromes. 2013 10.2210/pdb4glq/pdb pdb_00004glq 100 1 mirrors CCD 2012-01-01 MARMOSAIC 225 mm CCD SINGLE WAVELENGTH x-ray 1 0.97895 1.0 21-ID-D APS 0.97895 SYNCHROTRON APS BEAMLINE 21-ID-D 19598.188 Methyl-accepting chemotaxis protein C555A 1 man polymer 590.710 Phycoviolobilin, blue light-absorbing form 1 syn non-polymer 18.015 water 137 nat water no no MAAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRI QATTDIFKAGLTECHLNQLRPLKVRANLVVPMVIDDQLFGLLIAHQASEPRQWQEIEIDQFSELASTGSLVLERLHFLEQ TIASLHHHHHH MAAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRI QATTDIFKAGLTECHLNQLRPLKVRANLVVPMVIDDQLFGLLIAHQASEPRQWQEIEIDQFSELASTGSLVLERLHFLEQ TIASLHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n BP-1 sample tll0569 197221 Thermosynechococcus elongatus 562 Escherichia coli BL21-AI plasmid pBAD-Myc-His 1 1.78 30.81 VAPOR DIFFUSION, SITTING DROP 5.5 50 mM NaCl, 0.3 mM tris(2-carboxyethyl)phosphine, 10 mM HEPES-NaOH (pH 7.8), 25% polyethylene glycol 3350, 200 mM sodium chloride, 40 mM glycine, 100 mM BIS-TRIS-HCl, (pH 5.5), vapor diffusion, sitting drop, temperature 293K 293 audit_author citation_author software audit_author chem_comp citation_author struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond database_2 entity_src_gen pdbx_initial_refinement_model repository Initial release Database references Database references Non-polymer description Database references Refinement description Structure summary Database references Derived calculations Structure summary Data collection Database references Source and taxonomy Refinement description 1 0 2013-01-16 1 1 2013-02-06 1 2 2013-02-13 1 3 2013-05-15 1 4 2017-11-15 1 5 2020-09-23 1 6 2024-03-13 1 7 2024-04-03 _audit_author.name _citation_author.name _software.classification _software.contact_author _software.contact_author_email _software.date _software.language _software.location _software.name _software.type _software.version _audit_author.name _chem_comp.pdbx_synonyms _citation_author.name _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _database_2.pdbx_DOI _database_2.pdbx_database_accession Te-PixJ GAF domain RCSB Y RCSB 2012-08-14 REL REL VRB Phycoviolobilin, blue light-absorbing form HOH water SyB Cph1-GAF domain Other experimental model VRB 1000 2 VRB VRB 1000 A HOH 1 3 HOH HOH 1101 A HOH 2 3 HOH HOH 1102 A HOH 3 3 HOH HOH 1103 A HOH 4 3 HOH HOH 1104 A HOH 5 3 HOH HOH 1105 A HOH 6 3 HOH HOH 1106 A HOH 7 3 HOH HOH 1107 A HOH 8 3 HOH HOH 1108 A HOH 9 3 HOH HOH 1109 A HOH 10 3 HOH HOH 1110 A HOH 11 3 HOH HOH 1111 A HOH 12 3 HOH HOH 1112 A HOH 13 3 HOH HOH 1113 A HOH 14 3 HOH HOH 1114 A HOH 15 3 HOH HOH 1115 A HOH 16 3 HOH HOH 1116 A HOH 17 3 HOH HOH 1117 A HOH 18 3 HOH HOH 1118 A HOH 19 3 HOH HOH 1119 A HOH 20 3 HOH HOH 1120 A HOH 21 3 HOH HOH 1121 A HOH 22 3 HOH HOH 1122 A HOH 23 3 HOH HOH 1123 A HOH 24 3 HOH HOH 1124 A HOH 25 3 HOH HOH 1125 A HOH 26 3 HOH HOH 1126 A HOH 28 3 HOH HOH 1127 A HOH 29 3 HOH HOH 1128 A HOH 30 3 HOH HOH 1129 A HOH 31 3 HOH HOH 1130 A HOH 32 3 HOH HOH 1131 A HOH 33 3 HOH HOH 1132 A HOH 34 3 HOH HOH 1133 A HOH 35 3 HOH HOH 1134 A HOH 36 3 HOH HOH 1135 A HOH 37 3 HOH HOH 1136 A HOH 38 3 HOH HOH 1137 A HOH 39 3 HOH HOH 1138 A HOH 40 3 HOH HOH 1139 A HOH 41 3 HOH HOH 1140 A HOH 42 3 HOH HOH 1141 A HOH 43 3 HOH HOH 1142 A HOH 44 3 HOH HOH 1143 A HOH 45 3 HOH HOH 1144 A HOH 46 3 HOH HOH 1145 A HOH 47 3 HOH HOH 1146 A HOH 48 3 HOH HOH 1147 A HOH 49 3 HOH HOH 1148 A HOH 50 3 HOH HOH 1149 A HOH 51 3 HOH HOH 1150 A HOH 53 3 HOH HOH 1151 A HOH 54 3 HOH HOH 1152 A HOH 55 3 HOH HOH 1153 A HOH 56 3 HOH HOH 1154 A HOH 58 3 HOH HOH 1155 A HOH 59 3 HOH HOH 1156 A HOH 60 3 HOH HOH 1157 A HOH 61 3 HOH HOH 1158 A HOH 62 3 HOH HOH 1159 A HOH 63 3 HOH HOH 1160 A HOH 64 3 HOH HOH 1161 A HOH 65 3 HOH HOH 1162 A HOH 66 3 HOH HOH 1163 A HOH 67 3 HOH HOH 1164 A HOH 68 3 HOH HOH 1165 A HOH 69 3 HOH HOH 1166 A HOH 70 3 HOH HOH 1167 A HOH 71 3 HOH HOH 1168 A HOH 73 3 HOH HOH 1169 A HOH 74 3 HOH HOH 1170 A HOH 75 3 HOH HOH 1171 A HOH 76 3 HOH HOH 1172 A HOH 77 3 HOH HOH 1173 A HOH 79 3 HOH HOH 1174 A HOH 81 3 HOH HOH 1175 A HOH 82 3 HOH HOH 1176 A HOH 83 3 HOH HOH 1177 A HOH 84 3 HOH HOH 1178 A HOH 85 3 HOH HOH 1179 A HOH 86 3 HOH HOH 1180 A HOH 87 3 HOH HOH 1181 A HOH 88 3 HOH HOH 1182 A HOH 89 3 HOH HOH 1183 A HOH 90 3 HOH HOH 1184 A HOH 91 3 HOH HOH 1185 A HOH 92 3 HOH HOH 1186 A HOH 93 3 HOH HOH 1187 A HOH 94 3 HOH HOH 1188 A HOH 95 3 HOH HOH 1189 A HOH 96 3 HOH HOH 1190 A HOH 97 3 HOH HOH 1191 A HOH 98 3 HOH HOH 1192 A HOH 99 3 HOH HOH 1193 A HOH 100 3 HOH HOH 1194 A HOH 101 3 HOH HOH 1195 A HOH 102 3 HOH HOH 1196 A HOH 104 3 HOH HOH 1197 A HOH 105 3 HOH HOH 1198 A HOH 106 3 HOH HOH 1199 A HOH 107 3 HOH HOH 1200 A HOH 108 3 HOH HOH 1201 A HOH 109 3 HOH HOH 1202 A HOH 110 3 HOH HOH 1203 A HOH 111 3 HOH HOH 1204 A HOH 112 3 HOH HOH 1205 A HOH 113 3 HOH HOH 1206 A HOH 114 3 HOH HOH 1207 A HOH 115 3 HOH HOH 1208 A HOH 116 3 HOH HOH 1209 A HOH 117 3 HOH HOH 1210 A HOH 118 3 HOH HOH 1211 A HOH 119 3 HOH HOH 1212 A HOH 120 3 HOH HOH 1213 A HOH 121 3 HOH HOH 1214 A HOH 122 3 HOH HOH 1215 A HOH 123 3 HOH HOH 1216 A HOH 124 3 HOH HOH 1217 A HOH 125 3 HOH HOH 1218 A HOH 126 3 HOH HOH 1219 A HOH 127 3 HOH HOH 1220 A HOH 128 3 HOH HOH 1221 A HOH 129 3 HOH HOH 1222 A HOH 130 3 HOH HOH 1223 A HOH 132 3 HOH HOH 1224 A HOH 133 3 HOH HOH 1225 A HOH 134 3 HOH HOH 1226 A HOH 135 3 HOH HOH 1227 A HOH 136 3 HOH HOH 1228 A HOH 137 3 HOH HOH 1229 A HOH 138 3 HOH HOH 1230 A HOH 139 3 HOH HOH 1231 A HOH 140 3 HOH HOH 1232 A HOH 141 3 HOH HOH 1233 A HOH 142 3 HOH HOH 1234 A HOH 143 3 HOH HOH 1235 A HOH 144 3 HOH HOH 1236 A HOH 145 3 HOH HOH 1237 A 1.770 1.770 44.070 44.070 n 1 429 A n 2 430 A n 3 431 A n 4 432 A n 5 433 A n 6 434 A n 7 435 A GLU 436 n 8 GLU 436 A LEU 437 n 9 LEU 437 A ARG 438 n 10 ARG 438 A ASP 439 n 11 ASP 439 A ARG 440 n 12 ARG 440 A GLN 441 n 13 GLN 441 A ALA 442 n 14 ALA 442 A ILE 443 n 15 ILE 443 A PHE 444 n 16 PHE 444 A GLU 445 n 17 GLU 445 A THR 446 n 18 THR 446 A LEU 447 n 19 LEU 447 A VAL 448 n 20 VAL 448 A ALA 449 n 21 ALA 449 A LYS 450 n 22 LYS 450 A GLY 451 n 23 GLY 451 A ARG 452 n 24 ARG 452 A GLU 453 n 25 GLU 453 A LEU 454 n 26 LEU 454 A LEU 455 n 27 LEU 455 A ALA 456 n 28 ALA 456 A CYS 457 n 29 CYS 457 A ASP 458 n 30 ASP 458 A ARG 459 n 31 ARG 459 A VAL 460 n 32 VAL 460 A ILE 461 n 33 ILE 461 A VAL 462 n 34 VAL 462 A TYR 463 n 35 TYR 463 A ALA 464 n 36 ALA 464 A PHE 465 n 37 PHE 465 A ASP 466 n 38 ASP 466 A ASP 467 n 39 ASP 467 A ASN 468 n 40 ASN 468 A TYR 469 n 41 TYR 469 A VAL 470 n 42 VAL 470 A GLY 471 n 43 GLY 471 A THR 472 n 44 THR 472 A VAL 473 n 45 VAL 473 A VAL 474 n 46 VAL 474 A ALA 475 n 47 ALA 475 A GLU 476 n 48 GLU 476 A SER 477 n 49 SER 477 A VAL 478 n 50 VAL 478 A ALA 479 n 51 ALA 479 A GLU 480 n 52 GLU 480 A GLY 481 n 53 GLY 481 A TRP 482 n 54 TRP 482 A PRO 483 n 55 PRO 483 A GLN 484 n 56 GLN 484 A ALA 485 n 57 ALA 485 A ARG 486 n 58 ARG 486 A ASP 487 n 59 ASP 487 A GLN 488 n 60 GLN 488 A VAL 489 n 61 VAL 489 A ILE 490 n 62 ILE 490 A GLU 491 n 63 GLU 491 A ASP 492 n 64 ASP 492 A PRO 493 n 65 PRO 493 A CYS 494 n 66 CYS 494 A PHE 495 n 67 PHE 495 A ARG 496 n 68 ARG 496 A GLU 497 n 69 GLU 497 A HIS 498 n 70 HIS 498 A TRP 499 n 71 TRP 499 A VAL 500 n 72 VAL 500 A GLU 501 n 73 GLU 501 A ALA 502 n 74 ALA 502 A TYR 503 n 75 TYR 503 A ARG 504 n 76 ARG 504 A GLN 505 n 77 GLN 505 A GLY 506 n 78 GLY 506 A ARG 507 n 79 ARG 507 A ILE 508 n 80 ILE 508 A GLN 509 n 81 GLN 509 A ALA 510 n 82 ALA 510 A THR 511 n 83 THR 511 A THR 512 n 84 THR 512 A ASP 513 n 85 ASP 513 A ILE 514 n 86 ILE 514 A PHE 515 n 87 PHE 515 A LYS 516 n 88 LYS 516 A ALA 517 n 89 ALA 517 A GLY 518 n 90 GLY 518 A LEU 519 n 91 LEU 519 A THR 520 n 92 THR 520 A GLU 521 n 93 GLU 521 A CYS 522 n 94 CYS 522 A HIS 523 n 95 HIS 523 A LEU 524 n 96 LEU 524 A ASN 525 n 97 ASN 525 A GLN 526 n 98 GLN 526 A LEU 527 n 99 LEU 527 A ARG 528 n 100 ARG 528 A PRO 529 n 101 PRO 529 A LEU 530 n 102 LEU 530 A LYS 531 n 103 LYS 531 A VAL 532 n 104 VAL 532 A ARG 533 n 105 ARG 533 A ALA 534 n 106 ALA 534 A ASN 535 n 107 ASN 535 A LEU 536 n 108 LEU 536 A VAL 537 n 109 VAL 537 A VAL 538 n 110 VAL 538 A PRO 539 n 111 PRO 539 A MET 540 n 112 MET 540 A VAL 541 n 113 VAL 541 A ILE 542 n 114 ILE 542 A ASP 543 n 115 ASP 543 A ASP 544 n 116 ASP 544 A GLN 545 n 117 GLN 545 A LEU 546 n 118 LEU 546 A PHE 547 n 119 PHE 547 A GLY 548 n 120 GLY 548 A LEU 549 n 121 LEU 549 A LEU 550 n 122 LEU 550 A ILE 551 n 123 ILE 551 A ALA 552 n 124 ALA 552 A HIS 553 n 125 HIS 553 A GLN 554 n 126 GLN 554 A ALA 555 n 127 ALA 555 A SER 556 n 128 SER 556 A GLU 557 n 129 GLU 557 A PRO 558 n 130 PRO 558 A ARG 559 n 131 ARG 559 A GLN 560 n 132 GLN 560 A TRP 561 n 133 TRP 561 A GLN 562 n 134 GLN 562 A GLU 563 n 135 GLU 563 A ILE 564 n 136 ILE 564 A GLU 565 n 137 GLU 565 A ILE 566 n 138 ILE 566 A ASP 567 n 139 ASP 567 A GLN 568 n 140 GLN 568 A PHE 569 n 141 PHE 569 A SER 570 n 142 SER 570 A GLU 571 n 143 GLU 571 A LEU 572 n 144 LEU 572 A ALA 573 n 145 ALA 573 A SER 574 n 146 SER 574 A THR 575 n 147 THR 575 A GLY 576 n 148 GLY 576 A SER 577 n 149 SER 577 A LEU 578 n 150 LEU 578 A VAL 579 n 151 VAL 579 A LEU 580 n 152 LEU 580 A GLU 581 n 153 GLU 581 A ARG 582 n 154 ARG 582 A LEU 583 n 155 LEU 583 A HIS 584 n 156 HIS 584 A n 157 585 A n 158 586 A n 159 587 A n 160 588 A n 161 589 A n 162 590 A n 163 591 A n 164 592 A n 165 593 A n 166 594 A n 167 595 A n 168 596 A n 169 597 A n 170 598 A n 171 599 A 7.8570 3.9583 2.3360 9.0173 1.5739 3.4624 -0.3178 0.4678 0.4159 -0.1543 0.2222 -0.4498 -0.3079 0.3809 0.0356 0.2753 0.0161 0.0222 0.3010 0.0096 0.2643 refined 26.1600 84.2099 126.2912 X-RAY DIFFRACTION 1.5516 0.5167 1.3800 1.8312 1.3749 5.1550 -0.0092 0.0606 0.1649 0.0372 0.0283 -0.0772 -0.0768 -0.0031 -0.0410 0.2349 0.0122 0.0029 0.2307 0.0070 0.2753 refined 19.3703 87.3786 135.7801 X-RAY DIFFRACTION 1.4129 0.1594 2.4395 1.4157 0.8357 6.3018 -0.0443 0.1222 0.0843 -0.1924 0.1019 0.0584 -0.4454 -0.2105 -0.0639 0.2735 0.0088 -0.0098 0.2826 0.0444 0.2820 refined 13.1060 91.5712 131.2396 X-RAY DIFFRACTION 1.9588 0.1923 1.8132 1.4598 1.2337 2.4412 0.1079 -0.0826 -0.0722 0.1202 -0.0329 0.0208 0.1811 -0.0428 -0.0902 0.2956 -0.0117 0.0094 0.2529 0.0311 0.2658 refined 12.9167 77.5165 143.5422 X-RAY DIFFRACTION 0.0074 -0.0843 0.0903 5.6059 -5.6320 5.6599 -0.0706 -0.2086 0.5309 0.3258 0.0772 0.1139 -0.8086 -0.8152 -0.1026 0.3371 0.0585 -0.0030 0.3777 0.0015 0.4023 refined 4.3910 87.9134 140.5653 X-RAY DIFFRACTION 4.8182 2.7270 1.4681 2.9531 1.0139 3.2404 0.0748 0.2292 0.0271 0.0206 0.0364 0.0478 0.1332 0.0884 -0.0884 0.2194 0.0159 0.0240 0.2022 0.0045 0.2100 refined 14.7897 78.9892 134.2904 X-RAY DIFFRACTION 2.8181 -0.1463 -1.4037 1.5592 0.7016 2.3222 -0.0309 -0.0989 0.0335 -0.0247 0.1090 -0.1022 0.0840 0.2444 -0.0839 0.2481 0.0222 -0.0118 0.2519 0.0120 0.2220 refined 23.1725 75.3256 133.2340 X-RAY DIFFRACTION A 436 A 455 X-RAY DIFFRACTION 1 ( CHAIN A AND RESID 436:455 ) A 456 A 478 X-RAY DIFFRACTION 2 ( CHAIN A AND RESID 456:478 ) A 479 A 493 X-RAY DIFFRACTION 3 ( CHAIN A AND RESID 479:493 ) A 494 A 520 X-RAY DIFFRACTION 4 ( CHAIN A AND RESID 494:520 ) A 521 A 530 X-RAY DIFFRACTION 5 ( CHAIN A AND RESID 521:530 ) A 531 A 562 X-RAY DIFFRACTION 6 ( CHAIN A AND RESID 531:562 ) A 563 A 584 X-RAY DIFFRACTION 7 ( CHAIN A AND ( RESID 563:584 OR RESID 1000:1000 ) ) A 1000 A 1000 X-RAY DIFFRACTION 7 ( CHAIN A AND ( RESID 563:584 OR RESID 1000:1000 ) ) author_defined_assembly 1 monomeric software_defined_assembly PISA 2 dimeric 1900 -11 14300 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_467 y-1,x+1,-z+2 crystal symmetry operation -47.0400000000 47.0400000000 251.9320000000 A O ILE 490 A O ILE 62 A N GLY 471 A N GLY 43 A O THR 472 A O THR 44 A N ALA 464 A N ALA 36 A N TYR 463 A N TYR 35 A O LEU 549 A O LEU 121 A O GLN 554 A O GLN 126 A N ALA 534 A N ALA 106 A O ASN 535 A O ASN 107 A N THR 511 A N THR 83 1 A MET 429 A MET 1 1 Y 1 A ALA 430 A ALA 2 1 Y 1 A ALA 431 A ALA 3 1 Y 1 A VAL 432 A VAL 4 1 Y 1 A GLN 433 A GLN 5 1 Y 1 A LEU 434 A LEU 6 1 Y 1 A SER 435 A SER 7 1 Y 1 A PHE 585 A PHE 157 1 Y 1 A LEU 586 A LEU 158 1 Y 1 A GLU 587 A GLU 159 1 Y 1 A GLN 588 A GLN 160 1 Y 1 A THR 589 A THR 161 1 Y 1 A ILE 590 A ILE 162 1 Y 1 A ALA 591 A ALA 163 1 Y 1 A SER 592 A SER 164 1 Y 1 A LEU 593 A LEU 165 1 Y 1 A HIS 594 A HIS 166 1 Y 1 A HIS 595 A HIS 167 1 Y 1 A HIS 596 A HIS 168 1 Y 1 A HIS 597 A HIS 169 1 Y 1 A HIS 598 A HIS 170 1 Y 1 A HIS 599 A HIS 171 1 Y 1 A A NE O ARG HOH 582 1232 2.15 1 A A O O HOH HOH 1145 1158 2.18 1 A A CD1 CD1 ILE ILE 564 564 1.37 1_555 7_467 1 A ASP 487 75.00 -2.26 1 A SER 556 65.18 -0.25 96.570 34.2812 22.180 0.1996 0.1546 .1590 0.1590 1.7720 44.0680 1437 14498 14336 10.0200 98.8800 1.000 0.300 0.1100 random 1 0.000 MOLECULAR REPLACEMENT 17.0500 0.9000 1.1100 SyB Cph1-GAF domain ML FLAT BULK SOLVENT MODEL 1.7720 44.0680 137 1381 43 0 1201 0.007 1349 1.264 1851 0.083 200 0.005 244 17.122 530 0.2259 0.1646 1.8352 136 1206 1342 10 96.0000 0.2188 0.1587 1.9086 136 1227 1363 10 97.0000 0.1876 0.1460 1.9955 140 1257 1397 10 99.0000 0.2078 0.1456 2.1007 143 1270 1413 10 99.0000 0.1905 0.1413 2.2323 141 1282 1423 10 100.0000 0.2203 0.1566 2.4047 142 1270 1412 10 100.0000 0.2091 0.1707 2.6466 144 1299 1443 10 100.0000 0.1986 0.1700 3.0295 146 1312 1458 10 100.0000 0.1910 0.1421 3.8166 148 1333 1481 10 100.0000 0.1916 0.1559 44.0812 161 1443 1604 10 100.0000 1.770 50.000 4GLQ 14559 14530 0 0 0.069 1.081 1 10.700 10.000 99.800 0.323 1.770 1.800 699 0.709 1 9.500 98.500 0.292 1.800 1.830 689 0.771 1 9.900 99.300 0.239 1.830 1.870 715 0.776 1 9.700 99.400 0.214 1.870 1.910 693 0.826 1 9.800 99.700 0.183 1.910 1.950 730 0.902 1 9.700 99.900 0.154 1.950 1.990 682 0.971 1 10.000 99.300 0.136 1.990 2.040 716 0.958 1 9.700 99.600 0.113 2.040 2.100 714 1.004 1 10.100 100.000 0.106 2.100 2.160 704 1.057 1 9.900 99.900 0.099 2.160 2.230 727 1.038 1 9.900 100.000 0.097 2.230 2.310 705 1.067 1 10.000 100.000 0.092 2.310 2.400 718 1.187 1 10.000 99.900 0.086 2.400 2.510 725 1.190 1 10.100 99.700 0.078 2.510 2.640 726 1.150 1 10.100 100.000 0.067 2.640 2.810 728 1.106 1 10.100 100.000 0.064 2.810 3.030 736 1.164 1 10.400 100.000 0.063 3.030 3.330 742 1.535 1 10.500 100.000 0.057 3.330 3.810 747 1.523 1 10.400 100.000 0.046 3.810 4.800 780 1.153 1 10.100 100.000 0.052 4.800 50.000 854 1.326 1 9.200 100.000 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Sat Jun 2 05:21:23 2012 (svn ) http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.5.0 refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.8_1069 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection HKL-2000 Crystal Structure of the blue-light absorbing form of the Thermosynechococcus elongatus PixJ GAF-domain 1 N N 2 N N 3 N N A ARG 438 A ARG 10 HELX_P A ALA 456 A ALA 28 1 1 19 A PRO 493 A PRO 65 HELX_P A TRP 499 A TRP 71 1 2 7 A TRP 499 A TRP 71 HELX_P A GLN 505 A GLN 77 1 3 7 A ASP 513 A ASP 85 HELX_P A ALA 517 A ALA 89 5 4 5 A THR 520 A THR 92 HELX_P A ARG 528 A ARG 100 1 5 9 A GLN 562 A GLN 134 HELX_P A HIS 584 A HIS 156 1 6 23 covale 1.811 none A CYS 494 A SG CYS 66 1_555 A VRB 1000 B C16 VRB 1_555 covale 1.808 none A CYS 522 A SG CYS 94 1_555 A VRB 1000 B C02 VRB 1_555 SIGNALING PROTEIN chromophore, phytochrome, cyanobacteriochrome, phycoviolobilin, bilin, bili-protein, cation-pi interaction, signaling protein, GAF domain, photoreceptor, phycoviolobilin adduct Q8DLC7_THEEB UNP 1 430 Q8DLC7 AAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRIQ ATTDIFKAGLTECHLNQLRPLKVRANLVVPMVIDDQLFGLLIAHQCSEPRQWQEIEIDQFSELASTGSLVLERLHFLEQT IA 430 591 4GLQ 430 591 Q8DLC7 A 1 2 163 1 expression tag MET 429 4GLQ A Q8DLC7 UNP 1 1 CYS engineered mutation ALA 555 4GLQ A Q8DLC7 UNP 555 127 1 expression tag SER 592 4GLQ A Q8DLC7 UNP 164 1 expression tag LEU 593 4GLQ A Q8DLC7 UNP 165 1 expression tag HIS 594 4GLQ A Q8DLC7 UNP 166 1 expression tag HIS 595 4GLQ A Q8DLC7 UNP 167 1 expression tag HIS 596 4GLQ A Q8DLC7 UNP 168 1 expression tag HIS 597 4GLQ A Q8DLC7 UNP 169 1 expression tag HIS 598 4GLQ A Q8DLC7 UNP 170 1 expression tag HIS 599 4GLQ A Q8DLC7 UNP 171 6 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 489 A VAL 61 A ILE 490 A ILE 62 A GLY 471 A GLY 43 A VAL 478 A VAL 50 A ARG 459 A ARG 31 A PHE 465 A PHE 37 A GLN 545 A GLN 117 A ALA 555 A ALA 127 A VAL 532 A VAL 104 A ILE 542 A ILE 114 A GLN 509 A GLN 81 A THR 511 A THR 83 BINDING SITE FOR RESIDUE VRB A 1000 A VRB 1000 Software 23 A ASP 492 A ASP 64 23 1_555 A PRO 493 A PRO 65 23 1_555 A CYS 494 A CYS 66 23 1_555 A PHE 495 A PHE 67 23 1_555 A HIS 498 A HIS 70 23 1_555 A TRP 499 A TRP 71 23 1_555 A TYR 503 A TYR 75 23 1_555 A ARG 507 A ARG 79 23 1_555 A GLN 509 A GLN 81 23 1_555 A CYS 522 A CYS 94 23 1_555 A HIS 523 A HIS 95 23 1_555 A LEU 527 A LEU 99 23 1_555 A LEU 530 A LEU 102 23 1_555 A ASN 535 A ASN 107 23 1_555 A ILE 551 A ILE 123 23 1_555 A HIS 553 A HIS 125 23 1_555 A GLU 563 A GLU 135 23 5_557 A ILE 566 A ILE 138 23 5_557 A ASP 567 A ASP 139 23 5_557 A HOH 1126 C HOH 23 1_555 A HOH 1147 C HOH 23 1_555 A HOH 1148 C HOH 23 1_555 A HOH 1205 C HOH 23 1_555 92 P 41 21 2