0.021259
0.000000
0.000000
0.000000
0.021259
0.000000
0.000000
0.000000
0.007939
0.000000
0.000000
0.000000
Burgie, E.S.
Walker, J.M.
Phillips Jr., G.N.
Vierstra, R.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
47.040
47.040
125.966
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C33 H42 N4 O6
590.710
Phycoviolobilin, blue light-absorbing form
3-[5-[(3-ethyl-4-methyl-5-oxidanylidene-1,2-dihydropyrrol-2-yl)methyl]-2-[[5-[(Z)-(4-ethyl-3-methyl-5-oxidanylidene-pyr rol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
C
N
392
N
C
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
C
N
397
N
O
N
398
N
N
N
399
R
C
N
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
C
Y
404
N
C
Y
405
N
C
N
406
N
C
Y
407
N
C
Y
408
N
C
N
409
N
C
N
410
N
C
N
411
N
C
N
412
N
O
N
413
N
O
Y
414
N
C
Y
415
N
C
Y
416
N
N
N
417
N
C
N
418
N
C
N
419
N
N
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
C
Y
428
N
N
N
429
N
C
N
430
N
C
N
431
N
C
N
432
N
O
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
Y
405
N
sing
Y
406
N
doub
Y
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
Y
411
N
sing
N
412
N
sing
Y
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
Y
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
Z
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
doub
N
435
N
doub
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
UK
Structure
STRUE6
2005
0969-2126
21
88
97
10.1016/j.str.2012.11.001
23219880
A Photo-Labile Thioether Linkage to Phycoviolobilin Provides the Foundation for the Blue/Green Photocycles in DXCF-Cyanobacteriochromes.
2013
10.2210/pdb4glq/pdb
pdb_00004glq
100
1
mirrors
CCD
2012-01-01
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
x-ray
1
0.97895
1.0
21-ID-D
APS
0.97895
SYNCHROTRON
APS BEAMLINE 21-ID-D
19598.188
Methyl-accepting chemotaxis protein
C555A
1
man
polymer
590.710
Phycoviolobilin, blue light-absorbing form
1
syn
non-polymer
18.015
water
137
nat
water
no
no
MAAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRI
QATTDIFKAGLTECHLNQLRPLKVRANLVVPMVIDDQLFGLLIAHQASEPRQWQEIEIDQFSELASTGSLVLERLHFLEQ
TIASLHHHHHH
MAAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRI
QATTDIFKAGLTECHLNQLRPLKVRANLVVPMVIDDQLFGLLIAHQASEPRQWQEIEIDQFSELASTGSLVLERLHFLEQ
TIASLHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
BP-1
sample
tll0569
197221
Thermosynechococcus elongatus
562
Escherichia coli
BL21-AI
plasmid
pBAD-Myc-His
1
1.78
30.81
VAPOR DIFFUSION, SITTING DROP
5.5
50 mM NaCl, 0.3 mM tris(2-carboxyethyl)phosphine, 10 mM HEPES-NaOH (pH 7.8), 25% polyethylene glycol 3350, 200 mM sodium chloride, 40 mM glycine, 100 mM BIS-TRIS-HCl, (pH 5.5), vapor diffusion, sitting drop, temperature 293K
293
audit_author
citation_author
software
audit_author
chem_comp
citation_author
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
database_2
entity_src_gen
repository
Initial release
Database references
Database references
Non-polymer description
Database references
Refinement description
Structure summary
Database references
Derived calculations
Structure summary
Data collection
Database references
Source and taxonomy
1
0
2013-01-16
1
1
2013-02-06
1
2
2013-02-13
1
3
2013-05-15
1
4
2017-11-15
1
5
2020-09-23
1
6
2024-03-13
_audit_author.name
_citation_author.name
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_audit_author.name
_chem_comp.pdbx_synonyms
_citation_author.name
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Te-PixJ GAF domain
RCSB
Y
RCSB
2012-08-14
REL
REL
VRB
Phycoviolobilin, blue light-absorbing form
HOH
water
VRB
1000
2
VRB
VRB
1000
A
HOH
1
3
HOH
HOH
1101
A
HOH
2
3
HOH
HOH
1102
A
HOH
3
3
HOH
HOH
1103
A
HOH
4
3
HOH
HOH
1104
A
HOH
5
3
HOH
HOH
1105
A
HOH
6
3
HOH
HOH
1106
A
HOH
7
3
HOH
HOH
1107
A
HOH
8
3
HOH
HOH
1108
A
HOH
9
3
HOH
HOH
1109
A
HOH
10
3
HOH
HOH
1110
A
HOH
11
3
HOH
HOH
1111
A
HOH
12
3
HOH
HOH
1112
A
HOH
13
3
HOH
HOH
1113
A
HOH
14
3
HOH
HOH
1114
A
HOH
15
3
HOH
HOH
1115
A
HOH
16
3
HOH
HOH
1116
A
HOH
17
3
HOH
HOH
1117
A
HOH
18
3
HOH
HOH
1118
A
HOH
19
3
HOH
HOH
1119
A
HOH
20
3
HOH
HOH
1120
A
HOH
21
3
HOH
HOH
1121
A
HOH
22
3
HOH
HOH
1122
A
HOH
23
3
HOH
HOH
1123
A
HOH
24
3
HOH
HOH
1124
A
HOH
25
3
HOH
HOH
1125
A
HOH
26
3
HOH
HOH
1126
A
HOH
28
3
HOH
HOH
1127
A
HOH
29
3
HOH
HOH
1128
A
HOH
30
3
HOH
HOH
1129
A
HOH
31
3
HOH
HOH
1130
A
HOH
32
3
HOH
HOH
1131
A
HOH
33
3
HOH
HOH
1132
A
HOH
34
3
HOH
HOH
1133
A
HOH
35
3
HOH
HOH
1134
A
HOH
36
3
HOH
HOH
1135
A
HOH
37
3
HOH
HOH
1136
A
HOH
38
3
HOH
HOH
1137
A
HOH
39
3
HOH
HOH
1138
A
HOH
40
3
HOH
HOH
1139
A
HOH
41
3
HOH
HOH
1140
A
HOH
42
3
HOH
HOH
1141
A
HOH
43
3
HOH
HOH
1142
A
HOH
44
3
HOH
HOH
1143
A
HOH
45
3
HOH
HOH
1144
A
HOH
46
3
HOH
HOH
1145
A
HOH
47
3
HOH
HOH
1146
A
HOH
48
3
HOH
HOH
1147
A
HOH
49
3
HOH
HOH
1148
A
HOH
50
3
HOH
HOH
1149
A
HOH
51
3
HOH
HOH
1150
A
HOH
53
3
HOH
HOH
1151
A
HOH
54
3
HOH
HOH
1152
A
HOH
55
3
HOH
HOH
1153
A
HOH
56
3
HOH
HOH
1154
A
HOH
58
3
HOH
HOH
1155
A
HOH
59
3
HOH
HOH
1156
A
HOH
60
3
HOH
HOH
1157
A
HOH
61
3
HOH
HOH
1158
A
HOH
62
3
HOH
HOH
1159
A
HOH
63
3
HOH
HOH
1160
A
HOH
64
3
HOH
HOH
1161
A
HOH
65
3
HOH
HOH
1162
A
HOH
66
3
HOH
HOH
1163
A
HOH
67
3
HOH
HOH
1164
A
HOH
68
3
HOH
HOH
1165
A
HOH
69
3
HOH
HOH
1166
A
HOH
70
3
HOH
HOH
1167
A
HOH
71
3
HOH
HOH
1168
A
HOH
73
3
HOH
HOH
1169
A
HOH
74
3
HOH
HOH
1170
A
HOH
75
3
HOH
HOH
1171
A
HOH
76
3
HOH
HOH
1172
A
HOH
77
3
HOH
HOH
1173
A
HOH
79
3
HOH
HOH
1174
A
HOH
81
3
HOH
HOH
1175
A
HOH
82
3
HOH
HOH
1176
A
HOH
83
3
HOH
HOH
1177
A
HOH
84
3
HOH
HOH
1178
A
HOH
85
3
HOH
HOH
1179
A
HOH
86
3
HOH
HOH
1180
A
HOH
87
3
HOH
HOH
1181
A
HOH
88
3
HOH
HOH
1182
A
HOH
89
3
HOH
HOH
1183
A
HOH
90
3
HOH
HOH
1184
A
HOH
91
3
HOH
HOH
1185
A
HOH
92
3
HOH
HOH
1186
A
HOH
93
3
HOH
HOH
1187
A
HOH
94
3
HOH
HOH
1188
A
HOH
95
3
HOH
HOH
1189
A
HOH
96
3
HOH
HOH
1190
A
HOH
97
3
HOH
HOH
1191
A
HOH
98
3
HOH
HOH
1192
A
HOH
99
3
HOH
HOH
1193
A
HOH
100
3
HOH
HOH
1194
A
HOH
101
3
HOH
HOH
1195
A
HOH
102
3
HOH
HOH
1196
A
HOH
104
3
HOH
HOH
1197
A
HOH
105
3
HOH
HOH
1198
A
HOH
106
3
HOH
HOH
1199
A
HOH
107
3
HOH
HOH
1200
A
HOH
108
3
HOH
HOH
1201
A
HOH
109
3
HOH
HOH
1202
A
HOH
110
3
HOH
HOH
1203
A
HOH
111
3
HOH
HOH
1204
A
HOH
112
3
HOH
HOH
1205
A
HOH
113
3
HOH
HOH
1206
A
HOH
114
3
HOH
HOH
1207
A
HOH
115
3
HOH
HOH
1208
A
HOH
116
3
HOH
HOH
1209
A
HOH
117
3
HOH
HOH
1210
A
HOH
118
3
HOH
HOH
1211
A
HOH
119
3
HOH
HOH
1212
A
HOH
120
3
HOH
HOH
1213
A
HOH
121
3
HOH
HOH
1214
A
HOH
122
3
HOH
HOH
1215
A
HOH
123
3
HOH
HOH
1216
A
HOH
124
3
HOH
HOH
1217
A
HOH
125
3
HOH
HOH
1218
A
HOH
126
3
HOH
HOH
1219
A
HOH
127
3
HOH
HOH
1220
A
HOH
128
3
HOH
HOH
1221
A
HOH
129
3
HOH
HOH
1222
A
HOH
130
3
HOH
HOH
1223
A
HOH
132
3
HOH
HOH
1224
A
HOH
133
3
HOH
HOH
1225
A
HOH
134
3
HOH
HOH
1226
A
HOH
135
3
HOH
HOH
1227
A
HOH
136
3
HOH
HOH
1228
A
HOH
137
3
HOH
HOH
1229
A
HOH
138
3
HOH
HOH
1230
A
HOH
139
3
HOH
HOH
1231
A
HOH
140
3
HOH
HOH
1232
A
HOH
141
3
HOH
HOH
1233
A
HOH
142
3
HOH
HOH
1234
A
HOH
143
3
HOH
HOH
1235
A
HOH
144
3
HOH
HOH
1236
A
HOH
145
3
HOH
HOH
1237
A
1.770
1.770
44.070
44.070
n
1
429
A
n
2
430
A
n
3
431
A
n
4
432
A
n
5
433
A
n
6
434
A
n
7
435
A
GLU
436
n
8
GLU
436
A
LEU
437
n
9
LEU
437
A
ARG
438
n
10
ARG
438
A
ASP
439
n
11
ASP
439
A
ARG
440
n
12
ARG
440
A
GLN
441
n
13
GLN
441
A
ALA
442
n
14
ALA
442
A
ILE
443
n
15
ILE
443
A
PHE
444
n
16
PHE
444
A
GLU
445
n
17
GLU
445
A
THR
446
n
18
THR
446
A
LEU
447
n
19
LEU
447
A
VAL
448
n
20
VAL
448
A
ALA
449
n
21
ALA
449
A
LYS
450
n
22
LYS
450
A
GLY
451
n
23
GLY
451
A
ARG
452
n
24
ARG
452
A
GLU
453
n
25
GLU
453
A
LEU
454
n
26
LEU
454
A
LEU
455
n
27
LEU
455
A
ALA
456
n
28
ALA
456
A
CYS
457
n
29
CYS
457
A
ASP
458
n
30
ASP
458
A
ARG
459
n
31
ARG
459
A
VAL
460
n
32
VAL
460
A
ILE
461
n
33
ILE
461
A
VAL
462
n
34
VAL
462
A
TYR
463
n
35
TYR
463
A
ALA
464
n
36
ALA
464
A
PHE
465
n
37
PHE
465
A
ASP
466
n
38
ASP
466
A
ASP
467
n
39
ASP
467
A
ASN
468
n
40
ASN
468
A
TYR
469
n
41
TYR
469
A
VAL
470
n
42
VAL
470
A
GLY
471
n
43
GLY
471
A
THR
472
n
44
THR
472
A
VAL
473
n
45
VAL
473
A
VAL
474
n
46
VAL
474
A
ALA
475
n
47
ALA
475
A
GLU
476
n
48
GLU
476
A
SER
477
n
49
SER
477
A
VAL
478
n
50
VAL
478
A
ALA
479
n
51
ALA
479
A
GLU
480
n
52
GLU
480
A
GLY
481
n
53
GLY
481
A
TRP
482
n
54
TRP
482
A
PRO
483
n
55
PRO
483
A
GLN
484
n
56
GLN
484
A
ALA
485
n
57
ALA
485
A
ARG
486
n
58
ARG
486
A
ASP
487
n
59
ASP
487
A
GLN
488
n
60
GLN
488
A
VAL
489
n
61
VAL
489
A
ILE
490
n
62
ILE
490
A
GLU
491
n
63
GLU
491
A
ASP
492
n
64
ASP
492
A
PRO
493
n
65
PRO
493
A
CYS
494
n
66
CYS
494
A
PHE
495
n
67
PHE
495
A
ARG
496
n
68
ARG
496
A
GLU
497
n
69
GLU
497
A
HIS
498
n
70
HIS
498
A
TRP
499
n
71
TRP
499
A
VAL
500
n
72
VAL
500
A
GLU
501
n
73
GLU
501
A
ALA
502
n
74
ALA
502
A
TYR
503
n
75
TYR
503
A
ARG
504
n
76
ARG
504
A
GLN
505
n
77
GLN
505
A
GLY
506
n
78
GLY
506
A
ARG
507
n
79
ARG
507
A
ILE
508
n
80
ILE
508
A
GLN
509
n
81
GLN
509
A
ALA
510
n
82
ALA
510
A
THR
511
n
83
THR
511
A
THR
512
n
84
THR
512
A
ASP
513
n
85
ASP
513
A
ILE
514
n
86
ILE
514
A
PHE
515
n
87
PHE
515
A
LYS
516
n
88
LYS
516
A
ALA
517
n
89
ALA
517
A
GLY
518
n
90
GLY
518
A
LEU
519
n
91
LEU
519
A
THR
520
n
92
THR
520
A
GLU
521
n
93
GLU
521
A
CYS
522
n
94
CYS
522
A
HIS
523
n
95
HIS
523
A
LEU
524
n
96
LEU
524
A
ASN
525
n
97
ASN
525
A
GLN
526
n
98
GLN
526
A
LEU
527
n
99
LEU
527
A
ARG
528
n
100
ARG
528
A
PRO
529
n
101
PRO
529
A
LEU
530
n
102
LEU
530
A
LYS
531
n
103
LYS
531
A
VAL
532
n
104
VAL
532
A
ARG
533
n
105
ARG
533
A
ALA
534
n
106
ALA
534
A
ASN
535
n
107
ASN
535
A
LEU
536
n
108
LEU
536
A
VAL
537
n
109
VAL
537
A
VAL
538
n
110
VAL
538
A
PRO
539
n
111
PRO
539
A
MET
540
n
112
MET
540
A
VAL
541
n
113
VAL
541
A
ILE
542
n
114
ILE
542
A
ASP
543
n
115
ASP
543
A
ASP
544
n
116
ASP
544
A
GLN
545
n
117
GLN
545
A
LEU
546
n
118
LEU
546
A
PHE
547
n
119
PHE
547
A
GLY
548
n
120
GLY
548
A
LEU
549
n
121
LEU
549
A
LEU
550
n
122
LEU
550
A
ILE
551
n
123
ILE
551
A
ALA
552
n
124
ALA
552
A
HIS
553
n
125
HIS
553
A
GLN
554
n
126
GLN
554
A
ALA
555
n
127
ALA
555
A
SER
556
n
128
SER
556
A
GLU
557
n
129
GLU
557
A
PRO
558
n
130
PRO
558
A
ARG
559
n
131
ARG
559
A
GLN
560
n
132
GLN
560
A
TRP
561
n
133
TRP
561
A
GLN
562
n
134
GLN
562
A
GLU
563
n
135
GLU
563
A
ILE
564
n
136
ILE
564
A
GLU
565
n
137
GLU
565
A
ILE
566
n
138
ILE
566
A
ASP
567
n
139
ASP
567
A
GLN
568
n
140
GLN
568
A
PHE
569
n
141
PHE
569
A
SER
570
n
142
SER
570
A
GLU
571
n
143
GLU
571
A
LEU
572
n
144
LEU
572
A
ALA
573
n
145
ALA
573
A
SER
574
n
146
SER
574
A
THR
575
n
147
THR
575
A
GLY
576
n
148
GLY
576
A
SER
577
n
149
SER
577
A
LEU
578
n
150
LEU
578
A
VAL
579
n
151
VAL
579
A
LEU
580
n
152
LEU
580
A
GLU
581
n
153
GLU
581
A
ARG
582
n
154
ARG
582
A
LEU
583
n
155
LEU
583
A
HIS
584
n
156
HIS
584
A
n
157
585
A
n
158
586
A
n
159
587
A
n
160
588
A
n
161
589
A
n
162
590
A
n
163
591
A
n
164
592
A
n
165
593
A
n
166
594
A
n
167
595
A
n
168
596
A
n
169
597
A
n
170
598
A
n
171
599
A
7.8570
3.9583
2.3360
9.0173
1.5739
3.4624
-0.3178
0.4678
0.4159
-0.1543
0.2222
-0.4498
-0.3079
0.3809
0.0356
0.2753
0.0161
0.0222
0.3010
0.0096
0.2643
refined
26.1600
84.2099
126.2912
X-RAY DIFFRACTION
1.5516
0.5167
1.3800
1.8312
1.3749
5.1550
-0.0092
0.0606
0.1649
0.0372
0.0283
-0.0772
-0.0768
-0.0031
-0.0410
0.2349
0.0122
0.0029
0.2307
0.0070
0.2753
refined
19.3703
87.3786
135.7801
X-RAY DIFFRACTION
1.4129
0.1594
2.4395
1.4157
0.8357
6.3018
-0.0443
0.1222
0.0843
-0.1924
0.1019
0.0584
-0.4454
-0.2105
-0.0639
0.2735
0.0088
-0.0098
0.2826
0.0444
0.2820
refined
13.1060
91.5712
131.2396
X-RAY DIFFRACTION
1.9588
0.1923
1.8132
1.4598
1.2337
2.4412
0.1079
-0.0826
-0.0722
0.1202
-0.0329
0.0208
0.1811
-0.0428
-0.0902
0.2956
-0.0117
0.0094
0.2529
0.0311
0.2658
refined
12.9167
77.5165
143.5422
X-RAY DIFFRACTION
0.0074
-0.0843
0.0903
5.6059
-5.6320
5.6599
-0.0706
-0.2086
0.5309
0.3258
0.0772
0.1139
-0.8086
-0.8152
-0.1026
0.3371
0.0585
-0.0030
0.3777
0.0015
0.4023
refined
4.3910
87.9134
140.5653
X-RAY DIFFRACTION
4.8182
2.7270
1.4681
2.9531
1.0139
3.2404
0.0748
0.2292
0.0271
0.0206
0.0364
0.0478
0.1332
0.0884
-0.0884
0.2194
0.0159
0.0240
0.2022
0.0045
0.2100
refined
14.7897
78.9892
134.2904
X-RAY DIFFRACTION
2.8181
-0.1463
-1.4037
1.5592
0.7016
2.3222
-0.0309
-0.0989
0.0335
-0.0247
0.1090
-0.1022
0.0840
0.2444
-0.0839
0.2481
0.0222
-0.0118
0.2519
0.0120
0.2220
refined
23.1725
75.3256
133.2340
X-RAY DIFFRACTION
A
436
A
455
X-RAY DIFFRACTION
1
( CHAIN A AND RESID 436:455 )
A
456
A
478
X-RAY DIFFRACTION
2
( CHAIN A AND RESID 456:478 )
A
479
A
493
X-RAY DIFFRACTION
3
( CHAIN A AND RESID 479:493 )
A
494
A
520
X-RAY DIFFRACTION
4
( CHAIN A AND RESID 494:520 )
A
521
A
530
X-RAY DIFFRACTION
5
( CHAIN A AND RESID 521:530 )
A
531
A
562
X-RAY DIFFRACTION
6
( CHAIN A AND RESID 531:562 )
A
563
A
584
X-RAY DIFFRACTION
7
( CHAIN A AND ( RESID 563:584 OR RESID 1000:1000 ) )
A
1000
A
1000
X-RAY DIFFRACTION
7
( CHAIN A AND ( RESID 563:584 OR RESID 1000:1000 ) )
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
1900
-11
14300
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_467
y-1,x+1,-z+2
crystal symmetry operation
-47.0400000000
47.0400000000
251.9320000000
A
O
ILE
490
A
O
ILE
62
A
N
GLY
471
A
N
GLY
43
A
O
THR
472
A
O
THR
44
A
N
ALA
464
A
N
ALA
36
A
N
TYR
463
A
N
TYR
35
A
O
LEU
549
A
O
LEU
121
A
O
GLN
554
A
O
GLN
126
A
N
ALA
534
A
N
ALA
106
A
O
ASN
535
A
O
ASN
107
A
N
THR
511
A
N
THR
83
1
A
MET
429
A
MET
1
1
Y
1
A
ALA
430
A
ALA
2
1
Y
1
A
ALA
431
A
ALA
3
1
Y
1
A
VAL
432
A
VAL
4
1
Y
1
A
GLN
433
A
GLN
5
1
Y
1
A
LEU
434
A
LEU
6
1
Y
1
A
SER
435
A
SER
7
1
Y
1
A
PHE
585
A
PHE
157
1
Y
1
A
LEU
586
A
LEU
158
1
Y
1
A
GLU
587
A
GLU
159
1
Y
1
A
GLN
588
A
GLN
160
1
Y
1
A
THR
589
A
THR
161
1
Y
1
A
ILE
590
A
ILE
162
1
Y
1
A
ALA
591
A
ALA
163
1
Y
1
A
SER
592
A
SER
164
1
Y
1
A
LEU
593
A
LEU
165
1
Y
1
A
HIS
594
A
HIS
166
1
Y
1
A
HIS
595
A
HIS
167
1
Y
1
A
HIS
596
A
HIS
168
1
Y
1
A
HIS
597
A
HIS
169
1
Y
1
A
HIS
598
A
HIS
170
1
Y
1
A
HIS
599
A
HIS
171
1
Y
1
A
A
NE
O
ARG
HOH
582
1232
2.15
1
A
A
O
O
HOH
HOH
1145
1158
2.18
1
A
A
CD1
CD1
ILE
ILE
564
564
1.37
1_555
7_467
1
A
ASP
487
75.00
-2.26
1
A
SER
556
65.18
-0.25
96.570
34.2812
22.180
0.1996
0.1546
.1590
0.1590
1.7720
44.0680
1437
14498
14336
10.0200
98.8800
1.000
0.300
0.1100
random
1
0.000
MOLECULAR REPLACEMENT
17.0500
0.9000
1.1100
SyB Cph1-GAF domain
ML
FLAT BULK SOLVENT MODEL
1.7720
44.0680
137
1381
43
0
1201
0.007
1349
1.264
1851
0.083
200
0.005
244
17.122
530
0.2259
0.1646
1.8352
136
1206
1342
10
96.0000
0.2188
0.1587
1.9086
136
1227
1363
10
97.0000
0.1876
0.1460
1.9955
140
1257
1397
10
99.0000
0.2078
0.1456
2.1007
143
1270
1413
10
99.0000
0.1905
0.1413
2.2323
141
1282
1423
10
100.0000
0.2203
0.1566
2.4047
142
1270
1412
10
100.0000
0.2091
0.1707
2.6466
144
1299
1443
10
100.0000
0.1986
0.1700
3.0295
146
1312
1458
10
100.0000
0.1910
0.1421
3.8166
148
1333
1481
10
100.0000
0.1916
0.1559
44.0812
161
1443
1604
10
100.0000
1.770
50.000
4GLQ
14559
14530
0
0
0.069
1.081
1
10.700
10.000
99.800
0.323
1.770
1.800
699
0.709
1
9.500
98.500
0.292
1.800
1.830
689
0.771
1
9.900
99.300
0.239
1.830
1.870
715
0.776
1
9.700
99.400
0.214
1.870
1.910
693
0.826
1
9.800
99.700
0.183
1.910
1.950
730
0.902
1
9.700
99.900
0.154
1.950
1.990
682
0.971
1
10.000
99.300
0.136
1.990
2.040
716
0.958
1
9.700
99.600
0.113
2.040
2.100
714
1.004
1
10.100
100.000
0.106
2.100
2.160
704
1.057
1
9.900
99.900
0.099
2.160
2.230
727
1.038
1
9.900
100.000
0.097
2.230
2.310
705
1.067
1
10.000
100.000
0.092
2.310
2.400
718
1.187
1
10.000
99.900
0.086
2.400
2.510
725
1.190
1
10.100
99.700
0.078
2.510
2.640
726
1.150
1
10.100
100.000
0.067
2.640
2.810
728
1.106
1
10.100
100.000
0.064
2.810
3.030
736
1.164
1
10.400
100.000
0.063
3.030
3.330
742
1.535
1
10.500
100.000
0.057
3.330
3.810
747
1.523
1
10.400
100.000
0.046
3.810
4.800
780
1.153
1
10.100
100.000
0.052
4.800
50.000
854
1.326
1
9.200
100.000
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Sat Jun 2 05:21:23 2012 (svn )
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.5.0
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8_1069
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-2000
Crystal Structure of the blue-light absorbing form of the Thermosynechococcus elongatus PixJ GAF-domain
1
N
N
2
N
N
3
N
N
A
ARG
438
A
ARG
10
HELX_P
A
ALA
456
A
ALA
28
1
1
19
A
PRO
493
A
PRO
65
HELX_P
A
TRP
499
A
TRP
71
1
2
7
A
TRP
499
A
TRP
71
HELX_P
A
GLN
505
A
GLN
77
1
3
7
A
ASP
513
A
ASP
85
HELX_P
A
ALA
517
A
ALA
89
5
4
5
A
THR
520
A
THR
92
HELX_P
A
ARG
528
A
ARG
100
1
5
9
A
GLN
562
A
GLN
134
HELX_P
A
HIS
584
A
HIS
156
1
6
23
covale
1.811
none
A
CYS
494
A
SG
CYS
66
1_555
A
VRB
1000
B
C16
VRB
1_555
covale
1.808
none
A
CYS
522
A
SG
CYS
94
1_555
A
VRB
1000
B
C02
VRB
1_555
SIGNALING PROTEIN
chromophore, phytochrome, cyanobacteriochrome, phycoviolobilin, bilin, bili-protein, cation-pi interaction, signaling protein, GAF domain, photoreceptor, phycoviolobilin adduct
Q8DLC7_THEEB
UNP
1
430
Q8DLC7
AAVQLSELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRIQ
ATTDIFKAGLTECHLNQLRPLKVRANLVVPMVIDDQLFGLLIAHQCSEPRQWQEIEIDQFSELASTGSLVLERLHFLEQT
IA
430
591
4GLQ
430
591
Q8DLC7
A
1
2
163
1
expression tag
MET
429
4GLQ
A
Q8DLC7
UNP
1
1
CYS
engineered mutation
ALA
555
4GLQ
A
Q8DLC7
UNP
555
127
1
expression tag
SER
592
4GLQ
A
Q8DLC7
UNP
164
1
expression tag
LEU
593
4GLQ
A
Q8DLC7
UNP
165
1
expression tag
HIS
594
4GLQ
A
Q8DLC7
UNP
166
1
expression tag
HIS
595
4GLQ
A
Q8DLC7
UNP
167
1
expression tag
HIS
596
4GLQ
A
Q8DLC7
UNP
168
1
expression tag
HIS
597
4GLQ
A
Q8DLC7
UNP
169
1
expression tag
HIS
598
4GLQ
A
Q8DLC7
UNP
170
1
expression tag
HIS
599
4GLQ
A
Q8DLC7
UNP
171
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
489
A
VAL
61
A
ILE
490
A
ILE
62
A
GLY
471
A
GLY
43
A
VAL
478
A
VAL
50
A
ARG
459
A
ARG
31
A
PHE
465
A
PHE
37
A
GLN
545
A
GLN
117
A
ALA
555
A
ALA
127
A
VAL
532
A
VAL
104
A
ILE
542
A
ILE
114
A
GLN
509
A
GLN
81
A
THR
511
A
THR
83
BINDING SITE FOR RESIDUE VRB A 1000
A
VRB
1000
Software
23
A
ASP
492
A
ASP
64
23
1_555
A
PRO
493
A
PRO
65
23
1_555
A
CYS
494
A
CYS
66
23
1_555
A
PHE
495
A
PHE
67
23
1_555
A
HIS
498
A
HIS
70
23
1_555
A
TRP
499
A
TRP
71
23
1_555
A
TYR
503
A
TYR
75
23
1_555
A
ARG
507
A
ARG
79
23
1_555
A
GLN
509
A
GLN
81
23
1_555
A
CYS
522
A
CYS
94
23
1_555
A
HIS
523
A
HIS
95
23
1_555
A
LEU
527
A
LEU
99
23
1_555
A
LEU
530
A
LEU
102
23
1_555
A
ASN
535
A
ASN
107
23
1_555
A
ILE
551
A
ILE
123
23
1_555
A
HIS
553
A
HIS
125
23
1_555
A
GLU
563
A
GLU
135
23
5_557
A
ILE
566
A
ILE
138
23
5_557
A
ASP
567
A
ASP
139
23
5_557
A
HOH
1126
C
HOH
23
1_555
A
HOH
1147
C
HOH
23
1_555
A
HOH
1148
C
HOH
23
1_555
A
HOH
1205
C
HOH
23
1_555
92
P 41 21 2