0.017627
0.010177
0.000000
0.000000
0.020354
0.000000
0.000000
0.000000
0.005052
0.00000
0.00000
0.00000
Prade, L.
Lange, R.
Tidten-Luksch, N.
Chambovey, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
56.730
56.730
197.930
C8 H10 N6 O
206.205
7-methoxy-6-methylpteridine-2,4-diamine
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C11 H16 N2 O8 P 1
335.227
BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
NICOTINAMIDE MONONUCLEOTIDE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
N
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
N
N
8
N
N
Y
9
N
N
Y
10
N
N
Y
11
N
C
N
12
N
O
N
13
N
C
Y
14
N
N
N
15
N
N
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
N
N
27
S
C
N
28
N
C
N
29
N
O
N
30
N
C
N
31
N
O
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
N
N
40
S
C
N
41
N
C
N
42
N
O
N
43
N
C
N
44
N
C
N
45
N
C
N
46
N
N
N
47
N
C
N
48
N
N
N
49
N
N
N
50
N
O
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
N
N
67
S
C
N
68
N
C
N
69
N
O
N
70
N
C
N
71
N
C
N
72
N
O
N
73
N
N
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
O
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
N
N
100
R
C
N
101
N
C
N
102
N
O
N
103
N
C
N
104
N
S
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
S
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
N
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
Y
167
N
C
Y
168
N
N
Y
169
N
C
Y
170
N
C
Y
171
N
N
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
S
C
N
191
N
C
N
192
N
C
N
193
N
C
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
N
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
S
N
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
O
N
276
N
P
N
277
N
O
N
278
N
O
N
279
N
O
N
280
N
C
N
281
R
C
N
282
N
O
N
283
S
C
N
284
N
O
N
285
R
C
N
286
N
O
N
287
R
C
Y
288
N
N
Y
289
N
C
Y
290
N
C
N
291
N
C
N
292
N
O
N
293
N
N
Y
294
N
C
Y
295
N
C
Y
296
N
C
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
N
358
N
O
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
S
N
368
N
O
N
369
N
O
N
370
N
O
N
371
N
O
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
R
C
N
377
N
O
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
N
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
N
427
N
O
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
N
445
N
C
N
446
N
C
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
1
N
sing
Y
2
N
doub
Y
3
N
sing
Y
4
N
sing
Y
5
N
doub
Y
6
N
sing
Y
7
N
sing
N
8
N
sing
Y
9
N
doub
N
10
N
sing
Y
11
N
doub
Y
12
N
sing
Y
13
N
doub
Y
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
doub
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
Y
287
N
doub
Y
288
N
sing
Y
289
N
sing
N
290
N
sing
N
291
N
sing
Y
292
N
doub
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
Y
297
N
sing
N
298
N
sing
Y
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
Y
313
N
doub
Y
314
N
sing
Y
315
N
sing
N
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
Y
414
N
doub
Y
415
N
sing
Y
416
N
sing
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
0960-894X
22
6705
6711
10.1016/j.bmcl.2012.08.094
23006603
Structure-guided design, synthesis and biological evaluation of novel DNA ligase inhibitors with in vitro and in vivo anti-staphylococcal activity.
2012
10.2210/pdb4glw/pdb
pdb_00004glw
113
1
CCD
2007-11-08
Mar225
Bartels Monochromator with dual channel cut crystals (DCCM) in (+--+) geometry
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
X06DA
SLS
1
SYNCHROTRON
SLS BEAMLINE X06DA
34593.652
DNA ligase
6.5.1.2
2
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
206.205
7-methoxy-6-methylpteridine-2,4-diamine
2
syn
non-polymer
335.227
BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
1
syn
non-polymer
18.015
water
110
nat
water
Polydeoxyribonucleotide synthase [NAD(+)]
no
no
MNKRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVGGKVLDGFEKYSHQYPLYSLQ
DAFSREELDAFDARVRKEVAHPTYICELKIDGLSISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEELDIT
VRGECYMPRASFDQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPSTRDSQEKGLKYLEQLGFV
VNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFPA
MNKRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVGGKVLDGFEKYSHQYPLYSLQ
DAFSREELDAFDARVRKEVAHPTYICELKIDGLSISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEELDIT
VRGECYMPRASFDQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPSTRDSQEKGLKYLEQLGFV
VNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFPA
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
P1031
sample
ligA, SPP_1122
488223
Streptococcus pneumoniae
562
Escherichia coli
1
2.66
53.72
VAPOR DIFFUSION, HANGING DROP
7
0.6 M sodium formiate, 0.1 M Hepes, 36 % (w/v) PEG 4000, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
293.15
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Database references
Refinement description
Data collection
Database references
Derived calculations
1
0
2012-10-10
1
1
2012-10-31
1
2
2017-11-15
1
3
2024-02-28
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase
RCSB
Y
RCSB
2012-08-15
REL
REL
SO4
SULFATE ION
0XT
7-methoxy-6-methylpteridine-2,4-diamine
NMN
BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE
HOH
water
SO4
1
2
SO4
SO4
401
A
XXX
1
3
0XT
0XT
402
A
SO4
2
2
SO4
SO4
401
B
XXX
1
3
0XT
0XT
402
B
NMN
1
4
NMN
NMN
403
B
HOH
3
5
HOH
HOH
501
A
HOH
4
5
HOH
HOH
502
A
HOH
5
5
HOH
HOH
503
A
HOH
7
5
HOH
HOH
504
A
HOH
9
5
HOH
HOH
505
A
HOH
18
5
HOH
HOH
506
A
HOH
25
5
HOH
HOH
507
A
HOH
28
5
HOH
HOH
508
A
HOH
30
5
HOH
HOH
509
A
HOH
33
5
HOH
HOH
510
A
HOH
34
5
HOH
HOH
511
A
HOH
35
5
HOH
HOH
512
A
HOH
36
5
HOH
HOH
513
A
HOH
37
5
HOH
HOH
514
A
HOH
40
5
HOH
HOH
515
A
HOH
41
5
HOH
HOH
516
A
HOH
42
5
HOH
HOH
517
A
HOH
48
5
HOH
HOH
518
A
HOH
51
5
HOH
HOH
519
A
HOH
53
5
HOH
HOH
520
A
HOH
62
5
HOH
HOH
521
A
HOH
63
5
HOH
HOH
522
A
HOH
74
5
HOH
HOH
523
A
HOH
78
5
HOH
HOH
524
A
HOH
82
5
HOH
HOH
525
A
HOH
83
5
HOH
HOH
526
A
HOH
86
5
HOH
HOH
527
A
HOH
94
5
HOH
HOH
528
A
HOH
101
5
HOH
HOH
529
A
HOH
104
5
HOH
HOH
530
A
HOH
109
5
HOH
HOH
531
A
HOH
111
5
HOH
HOH
532
A
HOH
114
5
HOH
HOH
533
A
HOH
119
5
HOH
HOH
534
A
HOH
127
5
HOH
HOH
535
A
HOH
132
5
HOH
HOH
536
A
HOH
133
5
HOH
HOH
537
A
HOH
139
5
HOH
HOH
538
A
HOH
147
5
HOH
HOH
539
A
HOH
149
5
HOH
HOH
540
A
HOH
158
5
HOH
HOH
541
A
HOH
164
5
HOH
HOH
542
A
HOH
177
5
HOH
HOH
543
A
HOH
182
5
HOH
HOH
544
A
HOH
184
5
HOH
HOH
545
A
HOH
197
5
HOH
HOH
546
A
HOH
210
5
HOH
HOH
547
A
HOH
215
5
HOH
HOH
548
A
HOH
230
5
HOH
HOH
549
A
HOH
244
5
HOH
HOH
550
A
HOH
1
5
HOH
HOH
501
B
HOH
2
5
HOH
HOH
502
B
HOH
11
5
HOH
HOH
503
B
HOH
12
5
HOH
HOH
504
B
HOH
14
5
HOH
HOH
505
B
HOH
15
5
HOH
HOH
506
B
HOH
16
5
HOH
HOH
507
B
HOH
17
5
HOH
HOH
508
B
HOH
20
5
HOH
HOH
509
B
HOH
21
5
HOH
HOH
510
B
HOH
22
5
HOH
HOH
511
B
HOH
31
5
HOH
HOH
512
B
HOH
38
5
HOH
HOH
513
B
HOH
44
5
HOH
HOH
514
B
HOH
47
5
HOH
HOH
515
B
HOH
52
5
HOH
HOH
516
B
HOH
54
5
HOH
HOH
517
B
HOH
55
5
HOH
HOH
518
B
HOH
57
5
HOH
HOH
519
B
HOH
58
5
HOH
HOH
520
B
HOH
59
5
HOH
HOH
521
B
HOH
60
5
HOH
HOH
522
B
HOH
61
5
HOH
HOH
523
B
HOH
67
5
HOH
HOH
524
B
HOH
73
5
HOH
HOH
525
B
HOH
75
5
HOH
HOH
526
B
HOH
84
5
HOH
HOH
527
B
HOH
92
5
HOH
HOH
528
B
HOH
96
5
HOH
HOH
529
B
HOH
99
5
HOH
HOH
530
B
HOH
100
5
HOH
HOH
531
B
HOH
108
5
HOH
HOH
532
B
HOH
110
5
HOH
HOH
533
B
HOH
113
5
HOH
HOH
534
B
HOH
118
5
HOH
HOH
535
B
HOH
121
5
HOH
HOH
536
B
HOH
128
5
HOH
HOH
537
B
HOH
138
5
HOH
HOH
538
B
HOH
153
5
HOH
HOH
539
B
HOH
154
5
HOH
HOH
540
B
HOH
159
5
HOH
HOH
541
B
HOH
163
5
HOH
HOH
542
B
HOH
166
5
HOH
HOH
543
B
HOH
169
5
HOH
HOH
544
B
HOH
170
5
HOH
HOH
545
B
HOH
188
5
HOH
HOH
546
B
HOH
192
5
HOH
HOH
547
B
HOH
203
5
HOH
HOH
548
B
HOH
208
5
HOH
HOH
549
B
HOH
211
5
HOH
HOH
550
B
HOH
214
5
HOH
HOH
551
B
HOH
216
5
HOH
HOH
552
B
HOH
220
5
HOH
HOH
553
B
HOH
224
5
HOH
HOH
554
B
HOH
238
5
HOH
HOH
555
B
HOH
240
5
HOH
HOH
556
B
HOH
243
5
HOH
HOH
557
B
HOH
245
5
HOH
HOH
558
B
HOH
246
5
HOH
HOH
559
B
HOH
247
5
HOH
HOH
560
B
n
1
1
A
ASN
2
n
2
ASN
2
A
LYS
3
n
3
LYS
3
A
ARG
4
n
4
ARG
4
A
MET
5
n
5
MET
5
A
ASN
6
n
6
ASN
6
A
GLU
7
n
7
GLU
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
n
25
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
n
31
31
A
n
32
32
A
n
33
33
A
n
34
34
A
n
35
35
A
n
36
36
A
ARG
37
n
37
ARG
37
A
GLU
38
n
38
GLU
38
A
LEU
39
n
39
LEU
39
A
VAL
40
n
40
VAL
40
A
GLU
41
n
41
GLU
41
A
LEU
42
n
42
LEU
42
A
GLU
43
n
43
GLU
43
A
THR
44
n
44
THR
44
A
ALA
45
n
45
ALA
45
A
TYR
46
n
46
TYR
46
A
PRO
47
n
47
PRO
47
A
GLU
48
n
48
GLU
48
A
GLN
49
n
49
GLN
49
A
VAL
50
n
50
VAL
50
A
LEU
51
n
51
LEU
51
A
ALA
52
n
52
ALA
52
A
ASP
53
n
53
ASP
53
A
SER
54
n
54
SER
54
A
PRO
55
n
55
PRO
55
A
THR
56
n
56
THR
56
A
HIS
57
n
57
HIS
57
A
ARG
58
n
58
ARG
58
A
VAL
59
n
59
VAL
59
A
GLY
60
n
60
GLY
60
A
GLY
61
n
61
GLY
61
A
LYS
62
n
62
LYS
62
A
VAL
63
n
63
VAL
63
A
LEU
64
n
64
LEU
64
A
ASP
65
n
65
ASP
65
A
GLY
66
n
66
GLY
66
A
PHE
67
n
67
PHE
67
A
GLU
68
n
68
GLU
68
A
LYS
69
n
69
LYS
69
A
TYR
70
n
70
TYR
70
A
SER
71
n
71
SER
71
A
HIS
72
n
72
HIS
72
A
GLN
73
n
73
GLN
73
A
TYR
74
n
74
TYR
74
A
PRO
75
n
75
PRO
75
A
LEU
76
n
76
LEU
76
A
TYR
77
n
77
TYR
77
A
SER
78
n
78
SER
78
A
LEU
79
n
79
LEU
79
A
GLN
80
n
80
GLN
80
A
ASP
81
n
81
ASP
81
A
ALA
82
n
82
ALA
82
A
PHE
83
n
83
PHE
83
A
SER
84
n
84
SER
84
A
ARG
85
n
85
ARG
85
A
GLU
86
n
86
GLU
86
A
GLU
87
n
87
GLU
87
A
LEU
88
n
88
LEU
88
A
ASP
89
n
89
ASP
89
A
ALA
90
n
90
ALA
90
A
PHE
91
n
91
PHE
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
ARG
94
n
94
ARG
94
A
VAL
95
n
95
VAL
95
A
ARG
96
n
96
ARG
96
A
LYS
97
n
97
LYS
97
A
GLU
98
n
98
GLU
98
A
VAL
99
n
99
VAL
99
A
ALA
100
n
100
ALA
100
A
HIS
101
n
101
HIS
101
A
PRO
102
n
102
PRO
102
A
THR
103
n
103
THR
103
A
TYR
104
n
104
TYR
104
A
ILE
105
n
105
ILE
105
A
CYS
106
n
106
CYS
106
A
GLU
107
n
107
GLU
107
A
LEU
108
n
108
LEU
108
A
LYS
109
n
109
LYS
109
A
ILE
110
n
110
ILE
110
A
ASP
111
n
111
ASP
111
A
GLY
112
n
112
GLY
112
A
LEU
113
n
113
LEU
113
A
SER
114
n
114
SER
114
A
ILE
115
n
115
ILE
115
A
SER
116
n
116
SER
116
A
LEU
117
n
117
LEU
117
A
THR
118
n
118
THR
118
A
TYR
119
n
119
TYR
119
A
GLU
120
n
120
GLU
120
A
LYS
121
n
121
LYS
121
A
GLY
122
n
122
GLY
122
A
ILE
123
n
123
ILE
123
A
LEU
124
n
124
LEU
124
A
VAL
125
n
125
VAL
125
A
ALA
126
n
126
ALA
126
A
GLY
127
n
127
GLY
127
A
VAL
128
n
128
VAL
128
A
THR
129
n
129
THR
129
A
ARG
130
n
130
ARG
130
A
GLY
131
n
131
GLY
131
A
ASP
132
n
132
ASP
132
A
GLY
133
n
133
GLY
133
A
SER
134
n
134
SER
134
A
ILE
135
n
135
ILE
135
A
GLY
136
n
136
GLY
136
A
GLU
137
n
137
GLU
137
A
ASN
138
n
138
ASN
138
A
ILE
139
n
139
ILE
139
A
THR
140
n
140
THR
140
A
GLU
141
n
141
GLU
141
A
ASN
142
n
142
ASN
142
A
LEU
143
n
143
LEU
143
A
LYS
144
n
144
LYS
144
A
ARG
145
n
145
ARG
145
A
VAL
146
n
146
VAL
146
A
LYS
147
n
147
LYS
147
A
ASP
148
n
148
ASP
148
A
ILE
149
n
149
ILE
149
A
PRO
150
n
150
PRO
150
A
LEU
151
n
151
LEU
151
A
THR
152
n
152
THR
152
A
LEU
153
n
153
LEU
153
A
PRO
154
n
154
PRO
154
A
GLU
155
n
155
GLU
155
A
GLU
156
n
156
GLU
156
A
LEU
157
n
157
LEU
157
A
ASP
158
n
158
ASP
158
A
ILE
159
n
159
ILE
159
A
THR
160
n
160
THR
160
A
VAL
161
n
161
VAL
161
A
ARG
162
n
162
ARG
162
A
GLY
163
n
163
GLY
163
A
GLU
164
n
164
GLU
164
A
CYS
165
n
165
CYS
165
A
TYR
166
n
166
TYR
166
A
MET
167
n
167
MET
167
A
PRO
168
n
168
PRO
168
A
ARG
169
n
169
ARG
169
A
ALA
170
n
170
ALA
170
A
SER
171
n
171
SER
171
A
PHE
172
n
172
PHE
172
A
ASP
173
n
173
ASP
173
A
GLN
174
n
174
GLN
174
A
VAL
175
n
175
VAL
175
A
ASN
176
n
176
ASN
176
A
GLN
177
n
177
GLN
177
A
ALA
178
n
178
ALA
178
A
ARG
179
n
179
ARG
179
A
GLN
180
n
180
GLN
180
A
GLU
181
n
181
GLU
181
A
ASN
182
n
182
ASN
182
A
GLY
183
n
183
GLY
183
A
GLU
184
n
184
GLU
184
A
PRO
185
n
185
PRO
185
A
GLU
186
n
186
GLU
186
A
PHE
187
n
187
PHE
187
A
ALA
188
n
188
ALA
188
A
ASN
189
n
189
ASN
189
A
PRO
190
n
190
PRO
190
A
ARG
191
n
191
ARG
191
A
ASN
192
n
192
ASN
192
A
ALA
193
n
193
ALA
193
A
ALA
194
n
194
ALA
194
A
ALA
195
n
195
ALA
195
A
GLY
196
n
196
GLY
196
A
THR
197
n
197
THR
197
A
LEU
198
n
198
LEU
198
A
ARG
199
n
199
ARG
199
A
GLN
200
n
200
GLN
200
A
LEU
201
n
201
LEU
201
A
ASP
202
n
202
ASP
202
A
THR
203
n
203
THR
203
A
ALA
204
n
204
ALA
204
A
VAL
205
n
205
VAL
205
A
VAL
206
n
206
VAL
206
A
ALA
207
n
207
ALA
207
A
LYS
208
n
208
LYS
208
A
ARG
209
n
209
ARG
209
A
ASN
210
n
210
ASN
210
A
LEU
211
n
211
LEU
211
A
ALA
212
n
212
ALA
212
A
THR
213
n
213
THR
213
A
PHE
214
n
214
PHE
214
A
LEU
215
n
215
LEU
215
A
TYR
216
n
216
TYR
216
A
GLN
217
n
217
GLN
217
A
GLU
218
n
218
GLU
218
A
ALA
219
n
219
ALA
219
A
SER
220
n
220
SER
220
A
PRO
221
n
221
PRO
221
A
SER
222
n
222
SER
222
A
THR
223
n
223
THR
223
A
ARG
224
n
224
ARG
224
A
ASP
225
n
225
ASP
225
A
SER
226
n
226
SER
226
A
GLN
227
n
227
GLN
227
A
GLU
228
n
228
GLU
228
A
LYS
229
n
229
LYS
229
A
GLY
230
n
230
GLY
230
A
LEU
231
n
231
LEU
231
A
LYS
232
n
232
LYS
232
A
TYR
233
n
233
TYR
233
A
LEU
234
n
234
LEU
234
A
GLU
235
n
235
GLU
235
A
GLN
236
n
236
GLN
236
A
LEU
237
n
237
LEU
237
A
GLY
238
n
238
GLY
238
A
PHE
239
n
239
PHE
239
A
VAL
240
n
240
VAL
240
A
VAL
241
n
241
VAL
241
A
ASN
242
n
242
ASN
242
A
PRO
243
n
243
PRO
243
A
LYS
244
n
244
LYS
244
A
ARG
245
n
245
ARG
245
A
ILE
246
n
246
ILE
246
A
LEU
247
n
247
LEU
247
A
ALA
248
n
248
ALA
248
A
GLU
249
n
249
GLU
249
A
ASN
250
n
250
ASN
250
A
ILE
251
n
251
ILE
251
A
ASP
252
n
252
ASP
252
A
GLU
253
n
253
GLU
253
A
ILE
254
n
254
ILE
254
A
TRP
255
n
255
TRP
255
A
ASN
256
n
256
ASN
256
A
PHE
257
n
257
PHE
257
A
ILE
258
n
258
ILE
258
A
GLN
259
n
259
GLN
259
A
GLU
260
n
260
GLU
260
A
VAL
261
n
261
VAL
261
A
GLY
262
n
262
GLY
262
A
GLN
263
n
263
GLN
263
A
GLU
264
n
264
GLU
264
A
ARG
265
n
265
ARG
265
A
GLU
266
n
266
GLU
266
A
ASN
267
n
267
ASN
267
A
LEU
268
n
268
LEU
268
A
PRO
269
n
269
PRO
269
A
TYR
270
n
270
TYR
270
A
ASP
271
n
271
ASP
271
A
ILE
272
n
272
ILE
272
A
ASP
273
n
273
ASP
273
A
GLY
274
n
274
GLY
274
A
VAL
275
n
275
VAL
275
A
VAL
276
n
276
VAL
276
A
ILE
277
n
277
ILE
277
A
LYS
278
n
278
LYS
278
A
VAL
279
n
279
VAL
279
A
ASN
280
n
280
ASN
280
A
ASP
281
n
281
ASP
281
A
LEU
282
n
282
LEU
282
A
ALA
283
n
283
ALA
283
A
SER
284
n
284
SER
284
A
GLN
285
n
285
GLN
285
A
GLU
286
n
286
GLU
286
A
GLU
287
n
287
GLU
287
A
LEU
288
n
288
LEU
288
A
GLY
289
n
289
GLY
289
A
PHE
290
n
290
PHE
290
A
THR
291
n
291
THR
291
A
VAL
292
n
292
VAL
292
A
LYS
293
n
293
LYS
293
A
ALA
294
n
294
ALA
294
A
PRO
295
n
295
PRO
295
A
LYS
296
n
296
LYS
296
A
TRP
297
n
297
TRP
297
A
ALA
298
n
298
ALA
298
A
VAL
299
n
299
VAL
299
A
ALA
300
n
300
ALA
300
A
TYR
301
n
301
TYR
301
A
LYS
302
n
302
LYS
302
A
PHE
303
n
303
PHE
303
A
PRO
304
n
304
PRO
304
A
ALA
305
n
305
ALA
305
A
n
1
1
B
ASN
2
n
2
ASN
2
B
LYS
3
n
3
LYS
3
B
ARG
4
n
4
ARG
4
B
MET
5
n
5
MET
5
B
ASN
6
n
6
ASN
6
B
GLU
7
n
7
GLU
7
B
LEU
8
n
8
LEU
8
B
VAL
9
n
9
VAL
9
B
ALA
10
n
10
ALA
10
B
LEU
11
n
11
LEU
11
B
LEU
12
n
12
LEU
12
B
ASN
13
n
13
ASN
13
B
n
14
14
B
n
15
15
B
n
16
16
B
n
17
17
B
n
18
18
B
n
19
19
B
n
20
20
B
n
21
21
B
n
22
22
B
n
23
23
B
n
24
24
B
n
25
25
B
n
26
26
B
n
27
27
B
n
28
28
B
n
29
29
B
n
30
30
B
n
31
31
B
n
32
32
B
n
33
33
B
n
34
34
B
n
35
35
B
TYR
36
n
36
TYR
36
B
ARG
37
n
37
ARG
37
B
GLU
38
n
38
GLU
38
B
LEU
39
n
39
LEU
39
B
VAL
40
n
40
VAL
40
B
GLU
41
n
41
GLU
41
B
LEU
42
n
42
LEU
42
B
GLU
43
n
43
GLU
43
B
THR
44
n
44
THR
44
B
ALA
45
n
45
ALA
45
B
TYR
46
n
46
TYR
46
B
PRO
47
n
47
PRO
47
B
GLU
48
n
48
GLU
48
B
GLN
49
n
49
GLN
49
B
VAL
50
n
50
VAL
50
B
LEU
51
n
51
LEU
51
B
ALA
52
n
52
ALA
52
B
ASP
53
n
53
ASP
53
B
SER
54
n
54
SER
54
B
PRO
55
n
55
PRO
55
B
THR
56
n
56
THR
56
B
HIS
57
n
57
HIS
57
B
ARG
58
n
58
ARG
58
B
VAL
59
n
59
VAL
59
B
GLY
60
n
60
GLY
60
B
GLY
61
n
61
GLY
61
B
LYS
62
n
62
LYS
62
B
VAL
63
n
63
VAL
63
B
LEU
64
n
64
LEU
64
B
ASP
65
n
65
ASP
65
B
GLY
66
n
66
GLY
66
B
PHE
67
n
67
PHE
67
B
GLU
68
n
68
GLU
68
B
LYS
69
n
69
LYS
69
B
TYR
70
n
70
TYR
70
B
SER
71
n
71
SER
71
B
HIS
72
n
72
HIS
72
B
GLN
73
n
73
GLN
73
B
TYR
74
n
74
TYR
74
B
PRO
75
n
75
PRO
75
B
LEU
76
n
76
LEU
76
B
TYR
77
n
77
TYR
77
B
SER
78
n
78
SER
78
B
LEU
79
n
79
LEU
79
B
GLN
80
n
80
GLN
80
B
ASP
81
n
81
ASP
81
B
ALA
82
n
82
ALA
82
B
PHE
83
n
83
PHE
83
B
SER
84
n
84
SER
84
B
ARG
85
n
85
ARG
85
B
GLU
86
n
86
GLU
86
B
GLU
87
n
87
GLU
87
B
LEU
88
n
88
LEU
88
B
ASP
89
n
89
ASP
89
B
ALA
90
n
90
ALA
90
B
PHE
91
n
91
PHE
91
B
ASP
92
n
92
ASP
92
B
ALA
93
n
93
ALA
93
B
ARG
94
n
94
ARG
94
B
VAL
95
n
95
VAL
95
B
ARG
96
n
96
ARG
96
B
LYS
97
n
97
LYS
97
B
GLU
98
n
98
GLU
98
B
VAL
99
n
99
VAL
99
B
ALA
100
n
100
ALA
100
B
HIS
101
n
101
HIS
101
B
PRO
102
n
102
PRO
102
B
THR
103
n
103
THR
103
B
TYR
104
n
104
TYR
104
B
ILE
105
n
105
ILE
105
B
CYS
106
n
106
CYS
106
B
GLU
107
n
107
GLU
107
B
LEU
108
n
108
LEU
108
B
LYS
109
n
109
LYS
109
B
ILE
110
n
110
ILE
110
B
ASP
111
n
111
ASP
111
B
GLY
112
n
112
GLY
112
B
LEU
113
n
113
LEU
113
B
SER
114
n
114
SER
114
B
ILE
115
n
115
ILE
115
B
SER
116
n
116
SER
116
B
LEU
117
n
117
LEU
117
B
THR
118
n
118
THR
118
B
TYR
119
n
119
TYR
119
B
GLU
120
n
120
GLU
120
B
LYS
121
n
121
LYS
121
B
GLY
122
n
122
GLY
122
B
ILE
123
n
123
ILE
123
B
LEU
124
n
124
LEU
124
B
VAL
125
n
125
VAL
125
B
ALA
126
n
126
ALA
126
B
GLY
127
n
127
GLY
127
B
VAL
128
n
128
VAL
128
B
THR
129
n
129
THR
129
B
ARG
130
n
130
ARG
130
B
GLY
131
n
131
GLY
131
B
ASP
132
n
132
ASP
132
B
GLY
133
n
133
GLY
133
B
SER
134
n
134
SER
134
B
ILE
135
n
135
ILE
135
B
GLY
136
n
136
GLY
136
B
GLU
137
n
137
GLU
137
B
ASN
138
n
138
ASN
138
B
ILE
139
n
139
ILE
139
B
THR
140
n
140
THR
140
B
GLU
141
n
141
GLU
141
B
ASN
142
n
142
ASN
142
B
LEU
143
n
143
LEU
143
B
LYS
144
n
144
LYS
144
B
ARG
145
n
145
ARG
145
B
VAL
146
n
146
VAL
146
B
LYS
147
n
147
LYS
147
B
ASP
148
n
148
ASP
148
B
ILE
149
n
149
ILE
149
B
PRO
150
n
150
PRO
150
B
LEU
151
n
151
LEU
151
B
THR
152
n
152
THR
152
B
LEU
153
n
153
LEU
153
B
PRO
154
n
154
PRO
154
B
GLU
155
n
155
GLU
155
B
GLU
156
n
156
GLU
156
B
LEU
157
n
157
LEU
157
B
ASP
158
n
158
ASP
158
B
ILE
159
n
159
ILE
159
B
THR
160
n
160
THR
160
B
VAL
161
n
161
VAL
161
B
ARG
162
n
162
ARG
162
B
GLY
163
n
163
GLY
163
B
GLU
164
n
164
GLU
164
B
CYS
165
n
165
CYS
165
B
TYR
166
n
166
TYR
166
B
MET
167
n
167
MET
167
B
PRO
168
n
168
PRO
168
B
ARG
169
n
169
ARG
169
B
ALA
170
n
170
ALA
170
B
SER
171
n
171
SER
171
B
PHE
172
n
172
PHE
172
B
ASP
173
n
173
ASP
173
B
GLN
174
n
174
GLN
174
B
VAL
175
n
175
VAL
175
B
ASN
176
n
176
ASN
176
B
GLN
177
n
177
GLN
177
B
ALA
178
n
178
ALA
178
B
ARG
179
n
179
ARG
179
B
GLN
180
n
180
GLN
180
B
GLU
181
n
181
GLU
181
B
ASN
182
n
182
ASN
182
B
GLY
183
n
183
GLY
183
B
GLU
184
n
184
GLU
184
B
PRO
185
n
185
PRO
185
B
GLU
186
n
186
GLU
186
B
PHE
187
n
187
PHE
187
B
ALA
188
n
188
ALA
188
B
ASN
189
n
189
ASN
189
B
PRO
190
n
190
PRO
190
B
ARG
191
n
191
ARG
191
B
ASN
192
n
192
ASN
192
B
ALA
193
n
193
ALA
193
B
ALA
194
n
194
ALA
194
B
ALA
195
n
195
ALA
195
B
GLY
196
n
196
GLY
196
B
THR
197
n
197
THR
197
B
LEU
198
n
198
LEU
198
B
ARG
199
n
199
ARG
199
B
GLN
200
n
200
GLN
200
B
LEU
201
n
201
LEU
201
B
ASP
202
n
202
ASP
202
B
THR
203
n
203
THR
203
B
ALA
204
n
204
ALA
204
B
VAL
205
n
205
VAL
205
B
VAL
206
n
206
VAL
206
B
ALA
207
n
207
ALA
207
B
LYS
208
n
208
LYS
208
B
ARG
209
n
209
ARG
209
B
ASN
210
n
210
ASN
210
B
LEU
211
n
211
LEU
211
B
ALA
212
n
212
ALA
212
B
THR
213
n
213
THR
213
B
PHE
214
n
214
PHE
214
B
LEU
215
n
215
LEU
215
B
TYR
216
n
216
TYR
216
B
GLN
217
n
217
GLN
217
B
GLU
218
n
218
GLU
218
B
ALA
219
n
219
ALA
219
B
SER
220
n
220
SER
220
B
PRO
221
n
221
PRO
221
B
SER
222
n
222
SER
222
B
THR
223
n
223
THR
223
B
ARG
224
n
224
ARG
224
B
ASP
225
n
225
ASP
225
B
SER
226
n
226
SER
226
B
GLN
227
n
227
GLN
227
B
GLU
228
n
228
GLU
228
B
LYS
229
n
229
LYS
229
B
GLY
230
n
230
GLY
230
B
LEU
231
n
231
LEU
231
B
LYS
232
n
232
LYS
232
B
TYR
233
n
233
TYR
233
B
LEU
234
n
234
LEU
234
B
GLU
235
n
235
GLU
235
B
GLN
236
n
236
GLN
236
B
LEU
237
n
237
LEU
237
B
GLY
238
n
238
GLY
238
B
PHE
239
n
239
PHE
239
B
VAL
240
n
240
VAL
240
B
VAL
241
n
241
VAL
241
B
ASN
242
n
242
ASN
242
B
PRO
243
n
243
PRO
243
B
LYS
244
n
244
LYS
244
B
ARG
245
n
245
ARG
245
B
ILE
246
n
246
ILE
246
B
LEU
247
n
247
LEU
247
B
ALA
248
n
248
ALA
248
B
GLU
249
n
249
GLU
249
B
ASN
250
n
250
ASN
250
B
ILE
251
n
251
ILE
251
B
ASP
252
n
252
ASP
252
B
GLU
253
n
253
GLU
253
B
ILE
254
n
254
ILE
254
B
TRP
255
n
255
TRP
255
B
ASN
256
n
256
ASN
256
B
PHE
257
n
257
PHE
257
B
ILE
258
n
258
ILE
258
B
GLN
259
n
259
GLN
259
B
GLU
260
n
260
GLU
260
B
VAL
261
n
261
VAL
261
B
GLY
262
n
262
GLY
262
B
GLN
263
n
263
GLN
263
B
GLU
264
n
264
GLU
264
B
ARG
265
n
265
ARG
265
B
GLU
266
n
266
GLU
266
B
ASN
267
n
267
ASN
267
B
LEU
268
n
268
LEU
268
B
PRO
269
n
269
PRO
269
B
TYR
270
n
270
TYR
270
B
ASP
271
n
271
ASP
271
B
ILE
272
n
272
ILE
272
B
ASP
273
n
273
ASP
273
B
GLY
274
n
274
GLY
274
B
VAL
275
n
275
VAL
275
B
VAL
276
n
276
VAL
276
B
ILE
277
n
277
ILE
277
B
LYS
278
n
278
LYS
278
B
VAL
279
n
279
VAL
279
B
ASN
280
n
280
ASN
280
B
ASP
281
n
281
ASP
281
B
LEU
282
n
282
LEU
282
B
ALA
283
n
283
ALA
283
B
SER
284
n
284
SER
284
B
GLN
285
n
285
GLN
285
B
GLU
286
n
286
GLU
286
B
GLU
287
n
287
GLU
287
B
LEU
288
n
288
LEU
288
B
GLY
289
n
289
GLY
289
B
PHE
290
n
290
PHE
290
B
THR
291
n
291
THR
291
B
VAL
292
n
292
VAL
292
B
LYS
293
n
293
LYS
293
B
ALA
294
n
294
ALA
294
B
PRO
295
n
295
PRO
295
B
LYS
296
n
296
LYS
296
B
TRP
297
n
297
TRP
297
B
ALA
298
n
298
ALA
298
B
VAL
299
n
299
VAL
299
B
ALA
300
n
300
ALA
300
B
TYR
301
n
301
TYR
301
B
LYS
302
n
302
LYS
302
B
PHE
303
n
303
PHE
303
B
PRO
304
n
304
PRO
304
B
n
305
305
B
software_defined_assembly
PISA
2
dimeric
1880
-38
26360
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
68
A
N
GLU
68
A
O
ASN
138
A
O
ASN
138
A
N
ALA
82
A
N
ALA
82
A
O
LYS
302
A
O
LYS
302
A
O
TYR
301
A
O
TYR
301
A
N
VAL
275
A
N
VAL
275
A
O
LYS
278
A
O
LYS
278
A
N
ILE
105
A
N
ILE
105
A
N
TYR
104
A
N
TYR
104
A
O
ALA
248
A
O
ALA
248
A
O
VAL
125
A
O
VAL
125
A
N
THR
118
A
N
THR
118
A
N
LEU
113
A
N
LEU
113
A
O
CYS
165
A
O
CYS
165
A
N
ARG
162
A
N
ARG
162
A
O
GLN
217
A
O
GLN
217
B
N
TYR
70
B
N
TYR
70
B
O
GLY
136
B
O
GLY
136
B
N
ALA
82
B
N
ALA
82
B
O
ALA
300
B
O
ALA
300
B
O
VAL
299
B
O
VAL
299
B
N
ILE
277
B
N
ILE
277
B
O
ASP
273
B
O
ASP
273
B
N
LYS
109
B
N
LYS
109
B
N
TYR
104
B
N
TYR
104
B
O
ALA
248
B
O
ALA
248
B
O
VAL
128
B
O
VAL
128
B
N
SER
116
B
N
SER
116
B
N
TYR
119
B
N
TYR
119
B
O
ILE
159
B
O
ILE
159
B
N
ARG
162
B
N
ARG
162
B
O
GLN
217
B
O
GLN
217
1
A
CG
ASN
2
A
CG
ASN
2
1
Y
1
A
OD1
ASN
2
A
OD1
ASN
2
1
Y
1
A
ND2
ASN
2
A
ND2
ASN
2
1
Y
1
A
CG
LYS
3
A
CG
LYS
3
1
Y
1
A
CD
LYS
3
A
CD
LYS
3
1
Y
1
A
CE
LYS
3
A
CE
LYS
3
1
Y
1
A
NZ
LYS
3
A
NZ
LYS
3
1
Y
1
A
CG
ARG
4
A
CG
ARG
4
1
Y
1
A
CD
ARG
4
A
CD
ARG
4
1
Y
1
A
NE
ARG
4
A
NE
ARG
4
1
Y
1
A
CZ
ARG
4
A
CZ
ARG
4
1
Y
1
A
NH1
ARG
4
A
NH1
ARG
4
1
Y
1
A
NH2
ARG
4
A
NH2
ARG
4
1
Y
1
A
CG
ASN
6
A
CG
ASN
6
1
Y
1
A
OD1
ASN
6
A
OD1
ASN
6
1
Y
1
A
ND2
ASN
6
A
ND2
ASN
6
1
Y
1
A
CG
GLU
7
A
CG
GLU
7
1
Y
1
A
CD
GLU
7
A
CD
GLU
7
1
Y
1
A
OE1
GLU
7
A
OE1
GLU
7
1
Y
1
A
OE2
GLU
7
A
OE2
GLU
7
1
Y
1
A
CG
ARG
37
A
CG
ARG
37
1
Y
1
A
CD
ARG
37
A
CD
ARG
37
1
Y
1
A
NE
ARG
37
A
NE
ARG
37
1
Y
1
A
CZ
ARG
37
A
CZ
ARG
37
1
Y
1
A
NH1
ARG
37
A
NH1
ARG
37
1
Y
1
A
NH2
ARG
37
A
NH2
ARG
37
1
Y
1
A
CG
GLU
38
A
CG
GLU
38
1
Y
1
A
CD
GLU
38
A
CD
GLU
38
1
Y
1
A
OE1
GLU
38
A
OE1
GLU
38
1
Y
1
A
OE2
GLU
38
A
OE2
GLU
38
1
Y
1
A
CG
LEU
39
A
CG
LEU
39
1
Y
1
A
CD1
LEU
39
A
CD1
LEU
39
1
Y
1
A
CD2
LEU
39
A
CD2
LEU
39
1
Y
1
A
CG1
VAL
40
A
CG1
VAL
40
1
Y
1
A
CG2
VAL
40
A
CG2
VAL
40
1
Y
1
A
CG
GLU
41
A
CG
GLU
41
1
Y
1
A
CD
GLU
41
A
CD
GLU
41
1
Y
1
A
OE1
GLU
41
A
OE1
GLU
41
1
Y
1
A
OE2
GLU
41
A
OE2
GLU
41
1
Y
1
A
CG
LEU
42
A
CG
LEU
42
1
Y
1
A
CD1
LEU
42
A
CD1
LEU
42
1
Y
1
A
CD2
LEU
42
A
CD2
LEU
42
1
Y
1
A
CG
GLU
43
A
CG
GLU
43
1
Y
1
A
CD
GLU
43
A
CD
GLU
43
1
Y
1
A
OE1
GLU
43
A
OE1
GLU
43
1
Y
1
A
OE2
GLU
43
A
OE2
GLU
43
1
Y
1
A
CG
TYR
46
A
CG
TYR
46
1
Y
1
A
CD1
TYR
46
A
CD1
TYR
46
1
Y
1
A
CD2
TYR
46
A
CD2
TYR
46
1
Y
1
A
CE1
TYR
46
A
CE1
TYR
46
1
Y
1
A
CE2
TYR
46
A
CE2
TYR
46
1
Y
1
A
CZ
TYR
46
A
CZ
TYR
46
1
Y
1
A
OH
TYR
46
A
OH
TYR
46
1
Y
1
A
CG
GLU
48
A
CG
GLU
48
1
Y
1
A
CD
GLU
48
A
CD
GLU
48
1
Y
1
A
OE1
GLU
48
A
OE1
GLU
48
1
Y
1
A
OE2
GLU
48
A
OE2
GLU
48
1
Y
1
A
CG
GLN
49
A
CG
GLN
49
1
Y
1
A
CD
GLN
49
A
CD
GLN
49
1
Y
1
A
OE1
GLN
49
A
OE1
GLN
49
1
Y
1
A
NE2
GLN
49
A
NE2
GLN
49
1
Y
1
A
CG1
VAL
50
A
CG1
VAL
50
1
Y
1
A
CG2
VAL
50
A
CG2
VAL
50
1
Y
1
A
CG
ASP
53
A
CG
ASP
53
1
Y
1
A
OD1
ASP
53
A
OD1
ASP
53
1
Y
1
A
OD2
ASP
53
A
OD2
ASP
53
1
Y
1
A
CG
LEU
64
A
CG
LEU
64
1
Y
1
A
CD1
LEU
64
A
CD1
LEU
64
1
Y
1
A
CD2
LEU
64
A
CD2
LEU
64
1
Y
1
A
CG
ASP
65
A
CG
ASP
65
1
Y
1
A
OD1
ASP
65
A
OD1
ASP
65
1
Y
1
A
OD2
ASP
65
A
OD2
ASP
65
1
Y
1
A
CG
GLU
68
A
CG
GLU
68
1
Y
1
A
CD
GLU
68
A
CD
GLU
68
1
Y
1
A
OE1
GLU
68
A
OE1
GLU
68
1
Y
1
A
OE2
GLU
68
A
OE2
GLU
68
1
Y
1
A
CG
LYS
69
A
CG
LYS
69
1
Y
1
A
CD
LYS
69
A
CD
LYS
69
1
Y
1
A
CE
LYS
69
A
CE
LYS
69
1
Y
1
A
NZ
LYS
69
A
NZ
LYS
69
1
Y
1
A
CG
GLU
86
A
CG
GLU
86
1
Y
1
A
CD
GLU
86
A
CD
GLU
86
1
Y
1
A
OE1
GLU
86
A
OE1
GLU
86
1
Y
1
A
OE2
GLU
86
A
OE2
GLU
86
1
Y
1
A
CG
GLU
98
A
CG
GLU
98
1
Y
1
A
CD
GLU
98
A
CD
GLU
98
1
Y
1
A
OE1
GLU
98
A
OE1
GLU
98
1
Y
1
A
OE2
GLU
98
A
OE2
GLU
98
1
Y
1
A
CG1
ILE
135
A
CG1
ILE
135
1
Y
1
A
CG2
ILE
135
A
CG2
ILE
135
1
Y
1
A
CD1
ILE
135
A
CD1
ILE
135
1
Y
1
A
CG
LYS
147
A
CG
LYS
147
1
Y
1
A
CD
LYS
147
A
CD
LYS
147
1
Y
1
A
CE
LYS
147
A
CE
LYS
147
1
Y
1
A
NZ
LYS
147
A
NZ
LYS
147
1
Y
1
A
CG
ASP
173
A
CG
ASP
173
1
Y
1
A
OD1
ASP
173
A
OD1
ASP
173
1
Y
1
A
OD2
ASP
173
A
OD2
ASP
173
1
Y
1
A
CG
GLN
177
A
CG
GLN
177
1
Y
1
A
CD
GLN
177
A
CD
GLN
177
1
Y
1
A
OE1
GLN
177
A
OE1
GLN
177
1
Y
1
A
NE2
GLN
177
A
NE2
GLN
177
1
Y
1
A
CG
LYS
244
A
CG
LYS
244
1
Y
1
A
CD
LYS
244
A
CD
LYS
244
1
Y
1
A
CE
LYS
244
A
CE
LYS
244
1
Y
1
A
NZ
LYS
244
A
NZ
LYS
244
1
Y
1
A
CG
GLU
249
A
CG
GLU
249
1
Y
1
A
CD
GLU
249
A
CD
GLU
249
1
Y
1
A
OE1
GLU
249
A
OE1
GLU
249
1
Y
1
A
OE2
GLU
249
A
OE2
GLU
249
1
Y
1
A
CG1
ILE
251
A
CG1
ILE
251
1
Y
1
A
CG2
ILE
251
A
CG2
ILE
251
1
Y
1
A
CD1
ILE
251
A
CD1
ILE
251
1
Y
1
A
CG
GLU
266
A
CG
GLU
266
1
Y
1
A
CD
GLU
266
A
CD
GLU
266
1
Y
1
A
OE1
GLU
266
A
OE1
GLU
266
1
Y
1
A
OE2
GLU
266
A
OE2
GLU
266
1
Y
1
A
CG
LYS
293
A
CG
LYS
293
1
Y
1
A
CD
LYS
293
A
CD
LYS
293
1
Y
1
A
CE
LYS
293
A
CE
LYS
293
1
Y
1
A
NZ
LYS
293
A
NZ
LYS
293
1
Y
1
B
CG
ASN
2
B
CG
ASN
2
1
Y
1
B
OD1
ASN
2
B
OD1
ASN
2
1
Y
1
B
ND2
ASN
2
B
ND2
ASN
2
1
Y
1
B
CG
LYS
3
B
CG
LYS
3
1
Y
1
B
CD
LYS
3
B
CD
LYS
3
1
Y
1
B
CE
LYS
3
B
CE
LYS
3
1
Y
1
B
NZ
LYS
3
B
NZ
LYS
3
1
Y
1
B
CG
ARG
4
B
CG
ARG
4
1
Y
1
B
CD
ARG
4
B
CD
ARG
4
1
Y
1
B
NE
ARG
4
B
NE
ARG
4
1
Y
1
B
CZ
ARG
4
B
CZ
ARG
4
1
Y
1
B
NH1
ARG
4
B
NH1
ARG
4
1
Y
1
B
NH2
ARG
4
B
NH2
ARG
4
1
Y
1
B
CG
GLU
7
B
CG
GLU
7
1
Y
1
B
CD
GLU
7
B
CD
GLU
7
1
Y
1
B
OE1
GLU
7
B
OE1
GLU
7
1
Y
1
B
OE2
GLU
7
B
OE2
GLU
7
1
Y
1
B
CG
LEU
8
B
CG
LEU
8
1
Y
1
B
CD1
LEU
8
B
CD1
LEU
8
1
Y
1
B
CD2
LEU
8
B
CD2
LEU
8
1
Y
1
B
CG1
VAL
9
B
CG1
VAL
9
1
Y
1
B
CG2
VAL
9
B
CG2
VAL
9
1
Y
1
B
CG
LEU
11
B
CG
LEU
11
1
Y
1
B
CD1
LEU
11
B
CD1
LEU
11
1
Y
1
B
CD2
LEU
11
B
CD2
LEU
11
1
Y
1
B
CG
LEU
12
B
CG
LEU
12
1
Y
1
B
CD1
LEU
12
B
CD1
LEU
12
1
Y
1
B
CD2
LEU
12
B
CD2
LEU
12
1
Y
1
B
CG
ASN
13
B
CG
ASN
13
1
Y
1
B
OD1
ASN
13
B
OD1
ASN
13
1
Y
1
B
ND2
ASN
13
B
ND2
ASN
13
1
Y
1
B
CG
TYR
36
B
CG
TYR
36
1
Y
1
B
CD1
TYR
36
B
CD1
TYR
36
1
Y
1
B
CD2
TYR
36
B
CD2
TYR
36
1
Y
1
B
CE1
TYR
36
B
CE1
TYR
36
1
Y
1
B
CE2
TYR
36
B
CE2
TYR
36
1
Y
1
B
CZ
TYR
36
B
CZ
TYR
36
1
Y
1
B
OH
TYR
36
B
OH
TYR
36
1
Y
1
B
CG
ARG
37
B
CG
ARG
37
1
Y
1
B
CD
ARG
37
B
CD
ARG
37
1
Y
1
B
NE
ARG
37
B
NE
ARG
37
1
Y
1
B
CZ
ARG
37
B
CZ
ARG
37
1
Y
1
B
NH1
ARG
37
B
NH1
ARG
37
1
Y
1
B
NH2
ARG
37
B
NH2
ARG
37
1
Y
1
B
CG
GLU
38
B
CG
GLU
38
1
Y
1
B
CD
GLU
38
B
CD
GLU
38
1
Y
1
B
OE1
GLU
38
B
OE1
GLU
38
1
Y
1
B
OE2
GLU
38
B
OE2
GLU
38
1
Y
1
B
CG1
VAL
40
B
CG1
VAL
40
1
Y
1
B
CG2
VAL
40
B
CG2
VAL
40
1
Y
1
B
CG
GLU
41
B
CG
GLU
41
1
Y
1
B
CD
GLU
41
B
CD
GLU
41
1
Y
1
B
OE1
GLU
41
B
OE1
GLU
41
1
Y
1
B
OE2
GLU
41
B
OE2
GLU
41
1
Y
1
B
OG1
THR
44
B
OG1
THR
44
1
Y
1
B
CG2
THR
44
B
CG2
THR
44
1
Y
1
B
CG
GLU
48
B
CG
GLU
48
1
Y
1
B
CD
GLU
48
B
CD
GLU
48
1
Y
1
B
OE1
GLU
48
B
OE1
GLU
48
1
Y
1
B
OE2
GLU
48
B
OE2
GLU
48
1
Y
1
B
CG
GLN
49
B
CG
GLN
49
1
Y
1
B
CD
GLN
49
B
CD
GLN
49
1
Y
1
B
OE1
GLN
49
B
OE1
GLN
49
1
Y
1
B
NE2
GLN
49
B
NE2
GLN
49
1
Y
1
B
CG1
VAL
50
B
CG1
VAL
50
1
Y
1
B
CG2
VAL
50
B
CG2
VAL
50
1
Y
1
B
CG
LEU
51
B
CG
LEU
51
1
Y
1
B
CD1
LEU
51
B
CD1
LEU
51
1
Y
1
B
CD2
LEU
51
B
CD2
LEU
51
1
Y
1
B
CG
LYS
147
B
CG
LYS
147
1
Y
1
B
CD
LYS
147
B
CD
LYS
147
1
Y
1
B
CE
LYS
147
B
CE
LYS
147
1
Y
1
B
NZ
LYS
147
B
NZ
LYS
147
1
Y
1
B
CG
GLU
181
B
CG
GLU
181
1
Y
1
B
CD
GLU
181
B
CD
GLU
181
1
Y
1
B
OE1
GLU
181
B
OE1
GLU
181
1
Y
1
B
OE2
GLU
181
B
OE2
GLU
181
1
Y
1
B
CG
ARG
199
B
CG
ARG
199
1
Y
1
B
CD
ARG
199
B
CD
ARG
199
1
Y
1
B
NE
ARG
199
B
NE
ARG
199
1
Y
1
B
CZ
ARG
199
B
CZ
ARG
199
1
Y
1
B
NH1
ARG
199
B
NH1
ARG
199
1
Y
1
B
NH2
ARG
199
B
NH2
ARG
199
1
Y
1
B
CG1
ILE
251
B
CG1
ILE
251
1
Y
1
B
CG2
ILE
251
B
CG2
ILE
251
1
Y
1
B
CD1
ILE
251
B
CD1
ILE
251
1
Y
1
B
CG
GLN
263
B
CG
GLN
263
1
Y
1
B
CD
GLN
263
B
CD
GLN
263
1
Y
1
B
OE1
GLN
263
B
OE1
GLN
263
1
Y
1
B
NE2
GLN
263
B
NE2
GLN
263
1
Y
1
B
CG
GLU
264
B
CG
GLU
264
1
Y
1
B
CD
GLU
264
B
CD
GLU
264
1
Y
1
B
OE1
GLU
264
B
OE1
GLU
264
1
Y
1
B
OE2
GLU
264
B
OE2
GLU
264
1
Y
1
B
CG
GLU
266
B
CG
GLU
266
1
Y
1
B
CD
GLU
266
B
CD
GLU
266
1
Y
1
B
OE1
GLU
266
B
OE1
GLU
266
1
Y
1
B
OE2
GLU
266
B
OE2
GLU
266
1
Y
1
B
CG1
VAL
292
B
CG1
VAL
292
1
Y
1
B
CG2
VAL
292
B
CG2
VAL
292
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
LEU
8
A
LEU
8
1
Y
1
A
VAL
9
A
VAL
9
1
Y
1
A
ALA
10
A
ALA
10
1
Y
1
A
LEU
11
A
LEU
11
1
Y
1
A
LEU
12
A
LEU
12
1
Y
1
A
ASN
13
A
ASN
13
1
Y
1
A
ARG
14
A
ARG
14
1
Y
1
A
TYR
15
A
TYR
15
1
Y
1
A
ALA
16
A
ALA
16
1
Y
1
A
THR
17
A
THR
17
1
Y
1
A
GLU
18
A
GLU
18
1
Y
1
A
TYR
19
A
TYR
19
1
Y
1
A
TYR
20
A
TYR
20
1
Y
1
A
THR
21
A
THR
21
1
Y
1
A
SER
22
A
SER
22
1
Y
1
A
ASP
23
A
ASP
23
1
Y
1
A
ASN
24
A
ASN
24
1
Y
1
A
PRO
25
A
PRO
25
1
Y
1
A
SER
26
A
SER
26
1
Y
1
A
VAL
27
A
VAL
27
1
Y
1
A
SER
28
A
SER
28
1
Y
1
A
ASP
29
A
ASP
29
1
Y
1
A
SER
30
A
SER
30
1
Y
1
A
GLU
31
A
GLU
31
1
Y
1
A
TYR
32
A
TYR
32
1
Y
1
A
ASP
33
A
ASP
33
1
Y
1
A
ARG
34
A
ARG
34
1
Y
1
A
LEU
35
A
LEU
35
1
Y
1
A
TYR
36
A
TYR
36
1
Y
1
B
MET
1
B
MET
1
1
Y
1
B
ARG
14
B
ARG
14
1
Y
1
B
TYR
15
B
TYR
15
1
Y
1
B
ALA
16
B
ALA
16
1
Y
1
B
THR
17
B
THR
17
1
Y
1
B
GLU
18
B
GLU
18
1
Y
1
B
TYR
19
B
TYR
19
1
Y
1
B
TYR
20
B
TYR
20
1
Y
1
B
THR
21
B
THR
21
1
Y
1
B
SER
22
B
SER
22
1
Y
1
B
ASP
23
B
ASP
23
1
Y
1
B
ASN
24
B
ASN
24
1
Y
1
B
PRO
25
B
PRO
25
1
Y
1
B
SER
26
B
SER
26
1
Y
1
B
VAL
27
B
VAL
27
1
Y
1
B
SER
28
B
SER
28
1
Y
1
B
ASP
29
B
ASP
29
1
Y
1
B
SER
30
B
SER
30
1
Y
1
B
GLU
31
B
GLU
31
1
Y
1
B
TYR
32
B
TYR
32
1
Y
1
B
ASP
33
B
ASP
33
1
Y
1
B
ARG
34
B
ARG
34
1
Y
1
B
LEU
35
B
LEU
35
1
Y
1
B
ALA
305
B
ALA
305
1
Y
1
-3.15
0.50
120.30
117.15
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
96
96
96
N
1
-18.64
2.10
111.80
93.16
A
A
A
CG
CD
NE
ARG
ARG
ARG
145
145
145
N
1
9.58
1.40
123.60
133.18
A
A
A
CD
NE
CZ
ARG
ARG
ARG
145
145
145
N
1
5.22
0.50
120.30
125.52
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
145
145
145
N
1
-8.69
0.50
120.30
111.61
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
145
145
145
N
1
-13.44
2.00
110.40
96.96
A
A
A
CB
CA
C
ASP
ASP
ASP
148
148
148
N
1
3.34
0.50
120.30
123.64
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
209
209
209
N
1
-3.96
0.50
120.30
116.34
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
209
209
209
N
1
-16.03
2.30
115.30
99.27
A
A
A
CA
CB
CG
LEU
LEU
LEU
215
215
215
N
1
-5.41
0.90
118.30
112.89
A
A
A
CB
CG
OD1
ASP
ASP
ASP
225
225
225
N
1
-3.73
0.50
120.30
116.57
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
58
58
58
N
1
3.68
0.50
120.30
123.98
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
58
58
58
N
1
3.74
0.50
120.30
124.04
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
145
145
145
N
1
-13.13
2.00
110.40
97.27
B
B
B
CB
CA
C
ASP
ASP
ASP
148
148
148
N
1
-7.36
0.90
118.30
110.94
B
B
B
CB
CG
OD2
ASP
ASP
ASP
148
148
148
N
1
6.30
0.90
118.30
124.60
B
B
B
CB
CG
OD1
ASP
ASP
ASP
202
202
202
N
1
-20.46
2.30
115.30
94.84
B
B
B
CA
CB
CG
LEU
LEU
LEU
215
215
215
N
1
3.45
0.50
120.30
123.75
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
245
245
245
N
1
-3.25
0.50
120.30
117.05
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
245
245
245
N
1
A
ARG
4
-48.71
-75.21
1
A
TYR
46
-112.76
62.71
1
A
GLU
48
-52.34
-4.66
1
A
GLN
49
-149.56
46.66
1
A
ASP
65
-67.92
-77.22
1
B
LEU
11
-55.45
-80.54
1
B
LEU
12
-34.63
-31.41
1
B
TYR
46
-119.63
73.37
1
B
GLU
48
-78.82
42.99
1
B
GLN
49
-153.18
19.57
1
B
SER
78
-110.94
-169.12
1
B
ILE
251
-44.20
-17.94
1
B
THR
291
-75.41
-161.89
134.400
38.4718
17.740
0.25994
0.20669
0.209
0.20938
2
39.41
2203
64275
48105
1.000
0.500
RANDOM
1
THROUGHOUT
3
MOLECULAR REPLACEMENT
MAXIMUM LIKELIHOOD
2
39.41
110
4378
62
0
4206
40.143
2.000
39.41
4GLW
64275
48105
3
-3.000
0.119
1
8.510
99.900
0.430
2.000
2.200
3.370
61833
11976
1
100.000
0.354
2.200
2.500
5.230
57610
11528
1
100.000
0.223
2.500
3.000
8.900
51341
10397
1
99.900
0.110
3.000
4.000
13.780
35841
8214
1
99.800
0.082
4.000
5.000
16.850
13143
2921
1
99.900
0.077
5.000
6.000
16.760
5566
1286
1
99.200
0.064
6.000
10.000
17.680
6508
1397
1
99.900
0.053
10.000
39.41
19.070
2025
386
1
99.000
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
RemDAq
data reduction
INTEGRATE
phasing
PHASER
DNA ligase A in complex with inhibitor
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
ASN
2
A
ASN
2
HELX_P
A
GLU
7
A
GLU
7
1
1
6
A
GLU
38
A
GLU
38
HELX_P
A
TYR
46
A
TYR
46
1
2
9
A
PRO
47
A
PRO
47
HELX_P
A
VAL
50
A
VAL
50
5
3
4
A
SER
54
A
SER
54
HELX_P
A
VAL
59
A
VAL
59
5
4
6
A
SER
84
A
SER
84
HELX_P
A
ARG
96
A
ARG
96
1
5
13
A
ILE
139
A
ILE
139
HELX_P
A
LYS
144
A
LYS
144
1
6
6
A
PRO
168
A
PRO
168
HELX_P
A
ASN
182
A
ASN
182
1
7
15
A
ASN
189
A
ASN
189
HELX_P
A
ARG
199
A
ARG
199
1
8
11
A
ASP
202
A
ASP
202
HELX_P
A
ARG
209
A
ARG
209
1
9
8
A
SER
226
A
SER
226
HELX_P
A
GLY
238
A
GLY
238
1
10
13
A
ASN
250
A
ASN
250
HELX_P
A
ARG
265
A
ARG
265
1
11
16
A
GLU
266
A
GLU
266
HELX_P
A
LEU
268
A
LEU
268
5
12
3
A
ASP
281
A
ASP
281
HELX_P
A
GLY
289
A
GLY
289
1
13
9
B
LYS
3
B
LYS
3
HELX_P
B
ASN
13
B
ASN
13
1
14
11
B
ARG
37
B
ARG
37
HELX_P
B
TYR
46
B
TYR
46
1
15
10
B
PRO
47
B
PRO
47
HELX_P
B
VAL
50
B
VAL
50
5
16
4
B
SER
54
B
SER
54
HELX_P
B
VAL
59
B
VAL
59
5
17
6
B
SER
84
B
SER
84
HELX_P
B
LYS
97
B
LYS
97
1
18
14
B
ILE
139
B
ILE
139
HELX_P
B
LYS
144
B
LYS
144
1
19
6
B
PRO
168
B
PRO
168
HELX_P
B
ASN
182
B
ASN
182
1
20
15
B
ASN
189
B
ASN
189
HELX_P
B
GLN
200
B
GLN
200
1
21
12
B
ASP
202
B
ASP
202
HELX_P
B
ARG
209
B
ARG
209
1
22
8
B
SER
226
B
SER
226
HELX_P
B
LEU
237
B
LEU
237
1
23
12
B
ASN
250
B
ASN
250
HELX_P
B
ARG
265
B
ARG
265
1
24
16
B
GLU
266
B
GLU
266
HELX_P
B
LEU
268
B
LEU
268
5
25
3
B
ASP
281
B
ASP
281
HELX_P
B
GLY
289
B
GLY
289
1
26
9
LIGASE/LIGASE INHIBITOR
DNA ligase A, inhibitor, LIGASE-LIGASE INHIBITOR complex
DNLJ_STRZP
UNP
1
1
C1CKI0
MNKRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVGGKVLDGFEKYSHQYPLYSLQ
DAFSREELDAFDARVRKEVAHPTYICELKIDGLSISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPEELDIT
VRGECYMPRASFDQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPSTRDSQEKGLKYLEQLGFV
VNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFPA
1
305
4GLW
1
305
C1CKI0
A
1
1
305
1
305
4GLW
1
305
C1CKI0
B
1
1
305
2
5
4
2
5
4
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
68
A
GLU
68
A
SER
71
A
SER
71
A
ILE
135
A
ILE
135
A
ASN
138
A
ASN
138
A
ASP
81
A
ASP
81
A
ALA
82
A
ALA
82
A
ALA
298
A
ALA
298
A
LYS
302
A
LYS
302
A
ILE
272
A
ILE
272
A
VAL
279
A
VAL
279
A
TYR
104
A
TYR
104
A
ILE
110
A
ILE
110
A
ILE
246
A
ILE
246
A
ALA
248
A
ALA
248
A
ILE
123
A
ILE
123
A
THR
129
A
THR
129
A
LEU
113
A
LEU
113
A
GLU
120
A
GLU
120
A
ILE
159
A
ILE
159
A
TYR
166
A
TYR
166
A
ALA
212
A
ALA
212
A
GLU
218
A
GLU
218
B
LYS
69
B
LYS
69
B
SER
71
B
SER
71
B
ILE
135
B
ILE
135
B
GLU
137
B
GLU
137
B
ASP
81
B
ASP
81
B
ALA
82
B
ALA
82
B
ALA
298
B
ALA
298
B
TYR
301
B
TYR
301
B
ILE
272
B
ILE
272
B
VAL
279
B
VAL
279
B
TYR
104
B
TYR
104
B
ILE
110
B
ILE
110
B
ILE
246
B
ILE
246
B
ALA
248
B
ALA
248
B
ILE
123
B
ILE
123
B
THR
129
B
THR
129
B
LEU
113
B
LEU
113
B
GLU
120
B
GLU
120
B
ILE
159
B
ILE
159
B
TYR
166
B
TYR
166
B
ALA
212
B
ALA
212
B
GLU
218
B
GLU
218
BINDING SITE FOR RESIDUE SO4 A 401
A
SO4
401
Software
5
BINDING SITE FOR RESIDUE 0XT A 402
A
0XT
402
Software
10
BINDING SITE FOR RESIDUE SO4 B 401
B
SO4
401
Software
6
BINDING SITE FOR RESIDUE 0XT B 402
B
0XT
402
Software
10
BINDING SITE FOR RESIDUE NMN B 403
B
NMN
403
Software
8
A
ARG
224
A
ARG
224
5
1_555
A
ASP
225
A
ASP
225
5
1_555
A
LYS
229
A
LYS
229
5
1_555
B
LEU
157
B
LEU
157
5
1_555
B
ASP
158
B
ASP
158
5
1_555
A
TYR
77
A
TYR
77
10
1_555
A
LEU
79
A
LEU
79
10
1_555
A
GLU
107
A
GLU
107
10
1_555
A
LEU
108
A
LEU
108
10
1_555
A
TYR
216
A
TYR
216
10
1_555
A
GLN
217
A
GLN
217
10
1_555
A
VAL
276
A
VAL
276
10
1_555
A
LYS
278
A
LYS
278
10
1_555
A
TRP
297
A
TRP
297
10
1_555
A
HOH
505
H
HOH
10
1_555
A
LEU
157
A
LEU
157
6
1_555
A
ASP
158
A
ASP
158
6
1_555
B
ARG
224
B
ARG
224
6
1_555
B
ASP
225
B
ASP
225
6
1_555
B
LYS
229
B
LYS
229
6
1_555
B
HOH
505
I
HOH
6
1_555
B
TYR
77
B
TYR
77
10
1_555
B
LEU
79
B
LEU
79
10
1_555
B
GLU
107
B
GLU
107
10
1_555
B
LEU
108
B
LEU
108
10
1_555
B
LYS
109
B
LYS
109
10
1_555
B
GLU
164
B
GLU
164
10
1_555
B
TYR
216
B
TYR
216
10
1_555
B
LYS
278
B
LYS
278
10
1_555
B
TRP
297
B
TRP
297
10
1_555
B
HOH
510
I
HOH
10
1_555
B
ASP
53
B
ASP
53
8
1_555
B
LYS
121
B
LYS
121
8
1_555
B
GLY
122
B
GLY
122
8
1_555
B
THR
152
B
THR
152
8
1_555
B
LEU
153
B
LEU
153
8
1_555
B
PRO
154
B
PRO
154
8
1_555
B
GLU
155
B
GLU
155
8
1_555
B
GLU
156
B
GLU
156
8
1_555
144
P 31