0.017483 0.010094 0.000000 0.000000 0.020187 0.000000 0.000000 0.000000 0.009308 0.000000 0.000000 0.000000 Li, F. He, C. Wu, J. Shi, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.000 90.000 120.000 57.200 57.200 107.440 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 288 4692 4703 10.1074/jbc.M112.426148 23269674 The methyltransferase NSD3 has chromatin-binding motifs, PHD5-C5HCH, that are distinct from other NSD (nuclear receptor SET domain) family members in their histone H3 recognition. 2013 10.2210/pdb4gne/pdb pdb_00004gne 100 1 CCD 2011-07-09 ADSC QUANTUM 315r Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 0.97915 1.0 4.60 733354 0.085 1.465 49.536 18490 99.50 39.70 BL17U SSRF 0.97915 SYNCHROTRON SSRF BEAMLINE BL17U 12058.793 Histone-lysine N-methyltransferase NSD3 2.1.1.43 UNP RESIDUES 1310-1413 1 man polymer 776.881 Histone H3.3 UNP RESIDUES 2-8 1 syn polymer 65.409 ZINC ION 4 syn non-polymer 18.015 water 136 nat water Nuclear SET domain-containing protein 3, Protein whistle, WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, Wolf-Hirschhorn syndrome candidate 1-like protein 1, WHSC1-like protein 1 no no SNARKIKTEPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAAVSFCEFCPHSFC KDHEKGALVPSALEGRLCCSEHDPMAP SNARKIKTEPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAAVSFCEFCPHSFC KDHEKGALVPSALEGRLCCSEHDPMAP A polypeptide(L) no no ARTKQTA ARTKQTA B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample WHSC1L1, NSD3, DC28 9606 Homo sapiens 562 Escherichia coli BL21(DE3) plasmid 1 2.00 38.54 0.210 VAPOR DIFFUSION, HANGING DROP 7.0 0.1M Tris-HCl pH 7.0, 30% (w/v) PEG 3000, 0.2M NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 283K 283 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations 1 0 2013-01-02 1 1 2013-09-04 1 2 2024-03-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y PDBJ 2012-08-17 REL REL 0.066 0.066 96.90 33.10 0.068 0.068 99.60 35.30 0.090 0.090 100.00 38.30 0.082 0.082 100.00 39.50 0.078 0.078 100.00 40.60 0.095 0.095 100.00 40.90 0.105 0.105 99.90 41.30 0.131 0.131 99.70 41.60 0.192 0.192 99.60 41.70 0.281 0.281 98.50 37.40 ZN ZINC ION HOH water synthetic 9606 human Homo sapiens sample ZN 1 3 ZN ZN 1501 A ZN 2 3 ZN ZN 1502 A ZN 3 3 ZN ZN 1503 A ZN 4 3 ZN ZN 1504 A HOH 1 4 HOH HOH 1601 A HOH 2 4 HOH HOH 1602 A HOH 3 4 HOH HOH 1603 A HOH 4 4 HOH HOH 1604 A HOH 5 4 HOH HOH 1605 A HOH 6 4 HOH HOH 1606 A HOH 7 4 HOH HOH 1607 A HOH 9 4 HOH HOH 1608 A HOH 10 4 HOH HOH 1609 A HOH 11 4 HOH HOH 1610 A HOH 12 4 HOH HOH 1611 A HOH 13 4 HOH HOH 1612 A HOH 14 4 HOH HOH 1613 A HOH 15 4 HOH HOH 1614 A HOH 16 4 HOH HOH 1615 A HOH 17 4 HOH HOH 1616 A HOH 18 4 HOH HOH 1617 A HOH 19 4 HOH HOH 1618 A HOH 21 4 HOH HOH 1619 A HOH 22 4 HOH HOH 1620 A HOH 23 4 HOH HOH 1621 A HOH 24 4 HOH HOH 1622 A HOH 25 4 HOH HOH 1623 A HOH 26 4 HOH HOH 1624 A HOH 27 4 HOH HOH 1625 A HOH 28 4 HOH HOH 1626 A HOH 29 4 HOH HOH 1627 A HOH 30 4 HOH HOH 1628 A HOH 31 4 HOH HOH 1629 A HOH 32 4 HOH HOH 1630 A HOH 33 4 HOH HOH 1631 A HOH 35 4 HOH HOH 1632 A HOH 36 4 HOH HOH 1633 A HOH 37 4 HOH HOH 1634 A HOH 38 4 HOH HOH 1635 A HOH 39 4 HOH HOH 1636 A HOH 40 4 HOH HOH 1637 A HOH 41 4 HOH HOH 1638 A HOH 44 4 HOH HOH 1639 A HOH 45 4 HOH HOH 1640 A HOH 46 4 HOH HOH 1641 A HOH 47 4 HOH HOH 1642 A HOH 48 4 HOH HOH 1643 A HOH 49 4 HOH HOH 1644 A HOH 50 4 HOH HOH 1645 A HOH 51 4 HOH HOH 1646 A HOH 52 4 HOH HOH 1647 A HOH 53 4 HOH HOH 1648 A HOH 55 4 HOH HOH 1649 A HOH 56 4 HOH HOH 1650 A HOH 57 4 HOH HOH 1651 A HOH 58 4 HOH HOH 1652 A HOH 59 4 HOH HOH 1653 A HOH 60 4 HOH HOH 1654 A HOH 61 4 HOH HOH 1655 A HOH 62 4 HOH HOH 1656 A HOH 63 4 HOH HOH 1657 A HOH 64 4 HOH HOH 1658 A HOH 65 4 HOH HOH 1659 A HOH 66 4 HOH HOH 1660 A HOH 67 4 HOH HOH 1661 A HOH 68 4 HOH HOH 1662 A HOH 69 4 HOH HOH 1663 A HOH 71 4 HOH HOH 1664 A HOH 72 4 HOH HOH 1665 A HOH 73 4 HOH HOH 1666 A HOH 74 4 HOH HOH 1667 A HOH 75 4 HOH HOH 1668 A HOH 76 4 HOH HOH 1669 A HOH 77 4 HOH HOH 1670 A HOH 78 4 HOH HOH 1671 A HOH 79 4 HOH HOH 1672 A HOH 82 4 HOH HOH 1673 A HOH 83 4 HOH HOH 1674 A HOH 85 4 HOH HOH 1675 A HOH 87 4 HOH HOH 1676 A HOH 88 4 HOH HOH 1677 A HOH 90 4 HOH HOH 1678 A HOH 92 4 HOH HOH 1679 A HOH 93 4 HOH HOH 1680 A HOH 94 4 HOH HOH 1681 A HOH 96 4 HOH HOH 1682 A HOH 97 4 HOH HOH 1683 A HOH 98 4 HOH HOH 1684 A HOH 99 4 HOH HOH 1685 A HOH 100 4 HOH HOH 1686 A HOH 101 4 HOH HOH 1687 A HOH 102 4 HOH HOH 1688 A HOH 103 4 HOH HOH 1689 A HOH 104 4 HOH HOH 1690 A HOH 105 4 HOH HOH 1691 A HOH 107 4 HOH HOH 1692 A HOH 108 4 HOH HOH 1693 A HOH 109 4 HOH HOH 1694 A HOH 110 4 HOH HOH 1695 A HOH 111 4 HOH HOH 1696 A HOH 112 4 HOH HOH 1697 A HOH 114 4 HOH HOH 1698 A HOH 116 4 HOH HOH 1699 A HOH 117 4 HOH HOH 1700 A HOH 118 4 HOH HOH 1701 A HOH 119 4 HOH HOH 1702 A HOH 120 4 HOH HOH 1703 A HOH 121 4 HOH HOH 1704 A HOH 122 4 HOH HOH 1705 A HOH 123 4 HOH HOH 1706 A HOH 129 4 HOH HOH 1707 A HOH 131 4 HOH HOH 1708 A HOH 132 4 HOH HOH 1709 A HOH 133 4 HOH HOH 1710 A HOH 134 4 HOH HOH 1711 A HOH 135 4 HOH HOH 1712 A HOH 137 4 HOH HOH 1713 A HOH 138 4 HOH HOH 1714 A HOH 139 4 HOH HOH 1715 A HOH 142 4 HOH HOH 1716 A HOH 145 4 HOH HOH 1717 A HOH 147 4 HOH HOH 1718 A HOH 148 4 HOH HOH 1719 A HOH 152 4 HOH HOH 1720 A HOH 153 4 HOH HOH 1721 A HOH 154 4 HOH HOH 1722 A HOH 155 4 HOH HOH 1723 A HOH 156 4 HOH HOH 1724 A HOH 157 4 HOH HOH 1725 A HOH 8 4 HOH HOH 101 B HOH 20 4 HOH HOH 102 B HOH 34 4 HOH HOH 103 B HOH 42 4 HOH HOH 104 B HOH 43 4 HOH HOH 105 B HOH 70 4 HOH HOH 106 B HOH 80 4 HOH HOH 107 B HOH 84 4 HOH HOH 108 B HOH 91 4 HOH HOH 109 B HOH 124 4 HOH HOH 110 B HOH 144 4 HOH HOH 111 B n 1 1307 A n 2 1308 A n 3 1309 A n 4 1310 A n 5 1311 A n 6 1312 A n 7 1313 A n 8 1314 A n 9 1315 A PRO 1316 n 10 PRO 1316 A LYS 1317 n 11 LYS 1317 A GLN 1318 n 12 GLN 1318 A MET 1319 n 13 MET 1319 A HIS 1320 n 14 HIS 1320 A GLU 1321 n 15 GLU 1321 A ASP 1322 n 16 ASP 1322 A TYR 1323 n 17 TYR 1323 A CYS 1324 n 18 CYS 1324 A PHE 1325 n 19 PHE 1325 A GLN 1326 n 20 GLN 1326 A CYS 1327 n 21 CYS 1327 A GLY 1328 n 22 GLY 1328 A ASP 1329 n 23 ASP 1329 A GLY 1330 n 24 GLY 1330 A GLY 1331 n 25 GLY 1331 A GLU 1332 n 26 GLU 1332 A LEU 1333 n 27 LEU 1333 A VAL 1334 n 28 VAL 1334 A MET 1335 n 29 MET 1335 A CYS 1336 n 30 CYS 1336 A ASP 1337 n 31 ASP 1337 A LYS 1338 n 32 LYS 1338 A LYS 1339 n 33 LYS 1339 A ASP 1340 n 34 ASP 1340 A CYS 1341 n 35 CYS 1341 A PRO 1342 n 36 PRO 1342 A LYS 1343 n 37 LYS 1343 A ALA 1344 n 38 ALA 1344 A TYR 1345 n 39 TYR 1345 A HIS 1346 n 40 HIS 1346 A LEU 1347 n 41 LEU 1347 A LEU 1348 n 42 LEU 1348 A CYS 1349 n 43 CYS 1349 A LEU 1350 n 44 LEU 1350 A ASN 1351 n 45 ASN 1351 A LEU 1352 n 46 LEU 1352 A THR 1353 n 47 THR 1353 A GLN 1354 n 48 GLN 1354 A PRO 1355 n 49 PRO 1355 A PRO 1356 n 50 PRO 1356 A TYR 1357 n 51 TYR 1357 A GLY 1358 n 52 GLY 1358 A LYS 1359 n 53 LYS 1359 A TRP 1360 n 54 TRP 1360 A GLU 1361 n 55 GLU 1361 A CYS 1362 n 56 CYS 1362 A PRO 1363 n 57 PRO 1363 A TRP 1364 n 58 TRP 1364 A HIS 1365 n 59 HIS 1365 A GLN 1366 n 60 GLN 1366 A CYS 1367 n 61 CYS 1367 A ASP 1368 n 62 ASP 1368 A GLU 1369 n 63 GLU 1369 A CYS 1370 n 64 CYS 1370 A SER 1371 n 65 SER 1371 A SER 1372 n 66 SER 1372 A ALA 1373 n 67 ALA 1373 A ALA 1374 n 68 ALA 1374 A VAL 1375 n 69 VAL 1375 A SER 1376 n 70 SER 1376 A PHE 1377 n 71 PHE 1377 A CYS 1378 n 72 CYS 1378 A GLU 1379 n 73 GLU 1379 A PHE 1380 n 74 PHE 1380 A CYS 1381 n 75 CYS 1381 A PRO 1382 n 76 PRO 1382 A HIS 1383 n 77 HIS 1383 A SER 1384 n 78 SER 1384 A PHE 1385 n 79 PHE 1385 A CYS 1386 n 80 CYS 1386 A LYS 1387 n 81 LYS 1387 A ASP 1388 n 82 ASP 1388 A HIS 1389 n 83 HIS 1389 A GLU 1390 n 84 GLU 1390 A LYS 1391 n 85 LYS 1391 A GLY 1392 n 86 GLY 1392 A ALA 1393 n 87 ALA 1393 A LEU 1394 n 88 LEU 1394 A VAL 1395 n 89 VAL 1395 A PRO 1396 n 90 PRO 1396 A SER 1397 n 91 SER 1397 A ALA 1398 n 92 ALA 1398 A LEU 1399 n 93 LEU 1399 A GLU 1400 n 94 GLU 1400 A GLY 1401 n 95 GLY 1401 A ARG 1402 n 96 ARG 1402 A LEU 1403 n 97 LEU 1403 A CYS 1404 n 98 CYS 1404 A CYS 1405 n 99 CYS 1405 A SER 1406 n 100 SER 1406 A GLU 1407 n 101 GLU 1407 A HIS 1408 n 102 HIS 1408 A ASP 1409 n 103 ASP 1409 A PRO 1410 n 104 PRO 1410 A MET 1411 n 105 MET 1411 A ALA 1412 n 106 ALA 1412 A PRO 1413 n 107 PRO 1413 A ALA 1 n 1 ALA 1 B ARG 2 n 2 ARG 2 B THR 3 n 3 THR 3 B LYS 4 n 4 LYS 4 B GLN 5 n 5 GLN 5 B THR 6 n 6 THR 6 B n 7 7 B author_and_software_defined_assembly PISA 2 dimeric 1000 -11 6830 A CYS 1324 A SG CYS 18 1_555 A ZN 1501 C ZN ZN 1_555 A CYS 1327 A SG CYS 21 1_555 111.5 A CYS 1324 A SG CYS 18 1_555 A ZN 1501 C ZN ZN 1_555 A HIS 1346 A ND1 HIS 40 1_555 101.7 A CYS 1327 A SG CYS 21 1_555 A ZN 1501 C ZN ZN 1_555 A HIS 1346 A ND1 HIS 40 1_555 97.3 A CYS 1324 A SG CYS 18 1_555 A ZN 1501 C ZN ZN 1_555 A CYS 1349 A SG CYS 43 1_555 117.4 A CYS 1327 A SG CYS 21 1_555 A ZN 1501 C ZN ZN 1_555 A CYS 1349 A SG CYS 43 1_555 112.9 A HIS 1346 A ND1 HIS 40 1_555 A ZN 1501 C ZN ZN 1_555 A CYS 1349 A SG CYS 43 1_555 113.7 A CYS 1336 A SG CYS 30 1_555 A ZN 1502 D ZN ZN 1_555 A CYS 1341 A SG CYS 35 1_555 112.0 A CYS 1336 A SG CYS 30 1_555 A ZN 1502 D ZN ZN 1_555 A CYS 1362 A SG CYS 56 1_555 109.3 A CYS 1341 A SG CYS 35 1_555 A ZN 1502 D ZN ZN 1_555 A CYS 1362 A SG CYS 56 1_555 119.4 A CYS 1336 A SG CYS 30 1_555 A ZN 1502 D ZN ZN 1_555 A HIS 1365 A NE2 HIS 59 1_555 104.8 A CYS 1341 A SG CYS 35 1_555 A ZN 1502 D ZN ZN 1_555 A HIS 1365 A NE2 HIS 59 1_555 105.2 A CYS 1362 A SG CYS 56 1_555 A ZN 1502 D ZN ZN 1_555 A HIS 1365 A NE2 HIS 59 1_555 104.8 A CYS 1367 A SG CYS 61 1_555 A ZN 1504 F ZN ZN 1_555 A CYS 1370 A SG CYS 64 1_555 114.8 A CYS 1367 A SG CYS 61 1_555 A ZN 1504 F ZN ZN 1_555 A CYS 1386 A SG CYS 80 1_555 113.8 A CYS 1370 A SG CYS 64 1_555 A ZN 1504 F ZN ZN 1_555 A CYS 1386 A SG CYS 80 1_555 104.5 A CYS 1367 A SG CYS 61 1_555 A ZN 1504 F ZN ZN 1_555 A HIS 1389 A ND1 HIS 83 1_555 113.2 A CYS 1370 A SG CYS 64 1_555 A ZN 1504 F ZN ZN 1_555 A HIS 1389 A ND1 HIS 83 1_555 110.4 A CYS 1386 A SG CYS 80 1_555 A ZN 1504 F ZN ZN 1_555 A HIS 1389 A ND1 HIS 83 1_555 98.7 A CYS 1378 A SG CYS 72 1_555 A ZN 1503 E ZN ZN 1_555 A CYS 1381 A SG CYS 75 1_555 122.8 A CYS 1378 A SG CYS 72 1_555 A ZN 1503 E ZN ZN 1_555 A CYS 1405 A SG CYS 99 1_555 110.4 A CYS 1381 A SG CYS 75 1_555 A ZN 1503 E ZN ZN 1_555 A CYS 1405 A SG CYS 99 1_555 106.5 A CYS 1378 A SG CYS 72 1_555 A ZN 1503 E ZN ZN 1_555 A HIS 1408 A NE2 HIS 102 1_555 100.4 A CYS 1381 A SG CYS 75 1_555 A ZN 1503 E ZN ZN 1_555 A HIS 1408 A NE2 HIS 102 1_555 112.0 A CYS 1405 A SG CYS 99 1_555 A ZN 1503 E ZN ZN 1_555 A HIS 1408 A NE2 HIS 102 1_555 102.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 1345 A O TYR 39 A N VAL 1334 A N VAL 28 A N LEU 1333 A N LEU 27 B O LYS 4 B O LYS 4 A N SER 1376 A N SER 70 A O PHE 1385 A O PHE 79 A N VAL 1395 A N VAL 89 A O CYS 1404 A O CYS 98 1 A HOH 1709 G HOH 1 A HOH 1716 G HOH 1 A SER 1307 A SER 1 1 Y 1 A ASN 1308 A ASN 2 1 Y 1 A ALA 1309 A ALA 3 1 Y 1 A ARG 1310 A ARG 4 1 Y 1 A LYS 1311 A LYS 5 1 Y 1 A ILE 1312 A ILE 6 1 Y 1 A LYS 1313 A LYS 7 1 Y 1 A THR 1314 A THR 8 1 Y 1 A GLU 1315 A GLU 9 1 Y 1 B ALA 7 B ALA 7 1 Y 1 A CYS 1370 -141.86 -2.79 1 A SER 1371 79.08 -8.96 1 A ALA 1412 -151.53 70.15 65.930 19.2855 8.040 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.9670 0.9510 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES: REFINED INDIVIDUALLY 0.1785 0.1480 0.1495 1.4700 36.4200 948 18583 18455 5.1000 99.3000 0.1850 0.1548 1.000 0.200 0.9132 1.6630 0.0330 0.0728 0.0637 RANDOM 1 THROUGHOUT 0.000 SAD 0.0730 0.0640 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD MASK 1.4700 36.4200 136 950 4 0 810 0.007 0.020 889 1.297 1.954 1211 6.414 5.000 114 38.067 25.122 41 10.587 15.000 146 25.026 15.000 2 0.088 0.200 120 0.008 0.021 706 1.770 3.000 887 11.569 5.000 862 0.2050 0.1610 1.5030 65 1239 1304 20 97.0200 1.465 49.536 4GNE 18583 18490 2 2 0.085 1 36.700 39.700 99.500 0.293 0.281 1.470 1.540 2.600 96987 2593 0.047 0.293 0.281 1 15.400 37.400 98.500 0.203 0.192 1.540 1.640 3.700 103407 2481 0.031 0.203 0.192 1 22.100 41.700 99.600 0.141 0.131 1.640 1.750 5.300 97411 2344 0.022 0.141 0.131 1 29.400 41.600 99.700 0.116 0.105 1.750 1.890 6.200 91449 2215 0.018 0.116 0.105 1 35.700 41.300 99.900 0.106 0.095 1.890 2.070 6.700 83688 2045 0.016 0.106 0.095 1 41.700 40.900 100.000 0.087 0.078 2.070 2.320 7.700 75861 1867 0.013 0.087 0.078 1 48.200 40.600 100.000 0.091 0.082 2.320 2.670 7.100 66186 1674 0.014 0.091 0.082 1 49.900 39.500 100.000 0.097 0.090 2.670 3.280 6.500 55312 1444 0.015 0.097 0.090 1 53.800 38.300 100.000 0.074 0.068 3.280 4.630 8.300 40324 1141 0.012 0.074 0.068 1 55.500 35.300 99.600 0.076 0.066 4.630 36.417 8.800 22729 686 0.013 0.076 0.066 1 51.100 33.100 96.900 data reduction Andrew G.W. Leslie andrew@mrc-lmb.cam.ac.uk http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ MOSFLM package data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk 2011/05/18 Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other 3.3.20 phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection ADSC Quantum phasing SHELXD Crystal Structure of NSD3 tandem PHD5-C5HCH domains complexed with H3 peptide 1-7 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N A LEU 1347 A LEU 41 HELX_P A ASN 1351 A ASN 45 5 1 5 A CYS 1362 A CYS 56 HELX_P A GLN 1366 A GLN 60 5 2 5 metalc 2.333 A CYS 1324 A SG CYS 18 1_555 A ZN 1501 C ZN ZN 1_555 metalc 2.339 A CYS 1327 A SG CYS 21 1_555 A ZN 1501 C ZN ZN 1_555 metalc 2.324 A CYS 1336 A SG CYS 30 1_555 A ZN 1502 D ZN ZN 1_555 metalc 2.277 A CYS 1341 A SG CYS 35 1_555 A ZN 1502 D ZN ZN 1_555 metalc 2.095 A HIS 1346 A ND1 HIS 40 1_555 A ZN 1501 C ZN ZN 1_555 metalc 2.282 A CYS 1349 A SG CYS 43 1_555 A ZN 1501 C ZN ZN 1_555 metalc 2.336 A CYS 1362 A SG CYS 56 1_555 A ZN 1502 D ZN ZN 1_555 metalc 2.063 A HIS 1365 A NE2 HIS 59 1_555 A ZN 1502 D ZN ZN 1_555 metalc 2.318 A CYS 1367 A SG CYS 61 1_555 A ZN 1504 F ZN ZN 1_555 metalc 2.334 A CYS 1370 A SG CYS 64 1_555 A ZN 1504 F ZN ZN 1_555 metalc 2.326 A CYS 1378 A SG CYS 72 1_555 A ZN 1503 E ZN ZN 1_555 metalc 2.268 A CYS 1381 A SG CYS 75 1_555 A ZN 1503 E ZN ZN 1_555 metalc 2.320 A CYS 1386 A SG CYS 80 1_555 A ZN 1504 F ZN ZN 1_555 metalc 2.086 A HIS 1389 A ND1 HIS 83 1_555 A ZN 1504 F ZN ZN 1_555 metalc 2.350 A CYS 1405 A SG CYS 99 1_555 A ZN 1503 E ZN ZN 1_555 metalc 2.065 A HIS 1408 A NE2 HIS 102 1_555 A ZN 1503 E ZN ZN 1_555 TRANSFERASE/NUCLEAR PROTEIN zinc finger, transcription, histone, nuclear protein, TRANSFERASE-NUCLEAR PROTEIN complex NSD3_HUMAN UNP 1 1310 Q9BZ95 RKIKTEPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAAVSFCEFCPHSFCKDH EKGALVPSALEGRLCCSEHDPMAP H33_HUMAN UNP 2 2 P84243 ARTKQTA 1310 1413 4GNE 1310 1413 Q9BZ95 A 1 4 107 2 8 4GNE 1 7 P84243 B 2 1 7 1 expression tag SER 1307 4GNE A Q9BZ95 UNP 1 1 expression tag ASN 1308 4GNE A Q9BZ95 UNP 2 1 expression tag ALA 1309 4GNE A Q9BZ95 UNP 3 3 2 2 anti-parallel anti-parallel anti-parallel anti-parallel A ALA 1344 A ALA 38 A TYR 1345 A TYR 39 A GLU 1332 A GLU 26 A MET 1335 A MET 29 B THR 3 B THR 3 B GLN 5 B GLN 5 A SER 1376 A SER 70 A PHE 1377 A PHE 71 A SER 1384 A SER 78 A PHE 1385 A PHE 79 A VAL 1395 A VAL 89 A PRO 1396 A PRO 90 A LEU 1403 A LEU 97 A CYS 1404 A CYS 98 BINDING SITE FOR RESIDUE ZN A 1501 A ZN 1501 Software 4 BINDING SITE FOR RESIDUE ZN A 1502 A ZN 1502 Software 4 BINDING SITE FOR RESIDUE ZN A 1503 A ZN 1503 Software 4 BINDING SITE FOR RESIDUE ZN A 1504 A ZN 1504 Software 4 A CYS 1324 A CYS 18 4 1_555 A CYS 1327 A CYS 21 4 1_555 A HIS 1346 A HIS 40 4 1_555 A CYS 1349 A CYS 43 4 1_555 A CYS 1336 A CYS 30 4 1_555 A CYS 1341 A CYS 35 4 1_555 A CYS 1362 A CYS 56 4 1_555 A HIS 1365 A HIS 59 4 1_555 A CYS 1378 A CYS 72 4 1_555 A CYS 1381 A CYS 75 4 1_555 A CYS 1405 A CYS 99 4 1_555 A HIS 1408 A HIS 102 4 1_555 A CYS 1367 A CYS 61 4 1_555 A CYS 1370 A CYS 64 4 1_555 A CYS 1386 A CYS 80 4 1_555 A HIS 1389 A HIS 83 4 1_555 179 P 65 2 2