0.008303 0.000000 0.001600 0.000000 0.025556 0.000000 0.000000 0.000000 0.018296 0.000000 0.000000 0.000000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 100.910 90.000 120.440 39.130 55.663 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a putative methionine-binding lipoprotein (BSU32730) from Bacillus subtilis subsp. subtilis str. 168 at 1.95 A resolution 10.2210/pdb4got/pdb pdb_00004got 100 1 Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing) PIXEL 2012-08-02 DECTRIS PILATUS 6M single crystal Si(111) bent SINGLE WAVELENGTH M x-ray 1 0.97879 1.0 BL11-1 SSRL 0.97879 SYNCHROTRON SSRL BEAMLINE BL11-1 28110.549 Methionine-binding lipoprotein metQ 1 man polymer 196.106 SELENOMETHIONINE 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 175 nat water no yes GESGKKEIVVAATKTPHAEILKEAEPLLKEKGYTLKVKVLSDYK(MSE)YNKALADKEVDANYFQHIPYLEQE(MSE)KE NTDYKLVNAGAVHLEPFGIYSKTYKSLKDLPDGATIILTNNVAEQGR(MSE)LA(MSE)LENAGLITLDSKVETVDATLK DIKKNPKNLEFKKVAPELTAKAYENKEGDAVFINVNYAIQNKLNPKKDAIEVESTKNNPYANIIAVRKGEEDSAKIKAL (MSE)EVLHSKKIKDFIEKKYDGAVLPVSE GESGKKEIVVAATKTPHAEILKEAEPLLKEKGYTLKVKVLSDYKMYNKALADKEVDANYFQHIPYLEQEMKENTDYKLVN AGAVHLEPFGIYSKTYKSLKDLPDGATIILTNNVAEQGRMLAMLENAGLITLDSKVETVDATLKDIKKNPKNLEFKKVAP ELTAKAYENKEGDAVFINVNYAIQNKLNPKKDAIEVESTKNNPYANIIAVRKGEEDSAKIKALMEVLHSKKIKDFIEKKY DGAVLPVSE A JCSG-416526 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 168 sample metQ, yusA, BSU32730 224308 Bacillus subtilis subsp. subtilis 562 Escherichia Coli PB1 Plasmid SpeedET 1 2.29 46.31 VAPOR DIFFUSION, SITTING DROP 8.5 40.0% polyethylene glycol 400, 0.2M lithium sulfate, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI:Biology software citation_author database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Refinement description Database references Database references Derived calculations 1 0 2012-10-10 1 1 2017-11-15 1 2 2018-01-24 1 3 2023-02-01 _software.classification _software.name _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2012-08-20 REL REL MSE SELENOMETHIONINE SO4 SULFATE ION HOH water THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 27-274 OF THE TARGET SEQUENCE. MSE 300 2 MSE MSE 300 A SO4 301 3 SO4 SO4 301 A HOH 302 4 HOH HOH 401 A HOH 303 4 HOH HOH 402 A HOH 304 4 HOH HOH 403 A HOH 305 4 HOH HOH 404 A HOH 306 4 HOH HOH 405 A HOH 307 4 HOH HOH 406 A HOH 308 4 HOH HOH 407 A HOH 309 4 HOH HOH 408 A HOH 310 4 HOH HOH 409 A HOH 311 4 HOH HOH 410 A HOH 312 4 HOH HOH 411 A HOH 313 4 HOH HOH 412 A HOH 314 4 HOH HOH 413 A HOH 315 4 HOH HOH 414 A HOH 316 4 HOH HOH 415 A HOH 317 4 HOH HOH 416 A HOH 318 4 HOH HOH 417 A HOH 319 4 HOH HOH 418 A HOH 320 4 HOH HOH 419 A HOH 321 4 HOH HOH 420 A HOH 322 4 HOH HOH 421 A HOH 323 4 HOH HOH 422 A HOH 324 4 HOH HOH 423 A HOH 325 4 HOH HOH 424 A HOH 326 4 HOH HOH 425 A HOH 327 4 HOH HOH 426 A HOH 328 4 HOH HOH 427 A HOH 329 4 HOH HOH 428 A HOH 330 4 HOH HOH 429 A HOH 331 4 HOH HOH 430 A HOH 332 4 HOH HOH 431 A HOH 333 4 HOH HOH 432 A HOH 334 4 HOH HOH 433 A HOH 335 4 HOH HOH 434 A HOH 336 4 HOH HOH 435 A HOH 337 4 HOH HOH 436 A HOH 338 4 HOH HOH 437 A HOH 339 4 HOH HOH 438 A HOH 340 4 HOH HOH 439 A HOH 341 4 HOH HOH 440 A HOH 342 4 HOH HOH 441 A HOH 343 4 HOH HOH 442 A HOH 344 4 HOH HOH 443 A HOH 345 4 HOH HOH 444 A HOH 346 4 HOH HOH 445 A HOH 347 4 HOH HOH 446 A HOH 348 4 HOH HOH 447 A HOH 349 4 HOH HOH 448 A HOH 350 4 HOH HOH 449 A HOH 351 4 HOH HOH 450 A HOH 352 4 HOH HOH 451 A HOH 353 4 HOH HOH 452 A HOH 354 4 HOH HOH 453 A HOH 355 4 HOH HOH 454 A HOH 356 4 HOH HOH 455 A HOH 357 4 HOH HOH 456 A HOH 358 4 HOH HOH 457 A HOH 359 4 HOH HOH 458 A HOH 360 4 HOH HOH 459 A HOH 361 4 HOH HOH 460 A HOH 362 4 HOH HOH 461 A HOH 363 4 HOH HOH 462 A HOH 364 4 HOH HOH 463 A HOH 365 4 HOH HOH 464 A HOH 366 4 HOH HOH 465 A HOH 367 4 HOH HOH 466 A HOH 368 4 HOH HOH 467 A HOH 369 4 HOH HOH 468 A HOH 370 4 HOH HOH 469 A HOH 371 4 HOH HOH 470 A HOH 372 4 HOH HOH 471 A HOH 373 4 HOH HOH 472 A HOH 374 4 HOH HOH 473 A HOH 375 4 HOH HOH 474 A HOH 376 4 HOH HOH 475 A HOH 377 4 HOH HOH 476 A HOH 378 4 HOH HOH 477 A HOH 379 4 HOH HOH 478 A HOH 380 4 HOH HOH 479 A HOH 381 4 HOH HOH 480 A HOH 382 4 HOH HOH 481 A HOH 383 4 HOH HOH 482 A HOH 384 4 HOH HOH 483 A HOH 385 4 HOH HOH 484 A HOH 386 4 HOH HOH 485 A HOH 387 4 HOH HOH 486 A HOH 388 4 HOH HOH 487 A HOH 389 4 HOH HOH 488 A HOH 390 4 HOH HOH 489 A HOH 391 4 HOH HOH 490 A HOH 392 4 HOH HOH 491 A HOH 393 4 HOH HOH 492 A HOH 394 4 HOH HOH 493 A HOH 395 4 HOH HOH 494 A HOH 396 4 HOH HOH 495 A HOH 397 4 HOH HOH 496 A HOH 398 4 HOH HOH 497 A HOH 399 4 HOH HOH 498 A HOH 400 4 HOH HOH 499 A HOH 401 4 HOH HOH 500 A HOH 402 4 HOH HOH 501 A HOH 403 4 HOH HOH 502 A HOH 404 4 HOH HOH 503 A HOH 405 4 HOH HOH 504 A HOH 406 4 HOH HOH 505 A HOH 407 4 HOH HOH 506 A HOH 408 4 HOH HOH 507 A HOH 409 4 HOH HOH 508 A HOH 410 4 HOH HOH 509 A HOH 411 4 HOH HOH 510 A HOH 412 4 HOH HOH 511 A HOH 413 4 HOH HOH 512 A HOH 414 4 HOH HOH 513 A HOH 415 4 HOH HOH 514 A HOH 416 4 HOH HOH 515 A HOH 417 4 HOH HOH 516 A HOH 418 4 HOH HOH 517 A HOH 419 4 HOH HOH 518 A HOH 420 4 HOH HOH 519 A HOH 421 4 HOH HOH 520 A HOH 422 4 HOH HOH 521 A HOH 423 4 HOH HOH 522 A HOH 424 4 HOH HOH 523 A HOH 425 4 HOH HOH 524 A HOH 426 4 HOH HOH 525 A HOH 427 4 HOH HOH 526 A HOH 428 4 HOH HOH 527 A HOH 429 4 HOH HOH 528 A HOH 430 4 HOH HOH 529 A HOH 431 4 HOH HOH 530 A HOH 432 4 HOH HOH 531 A HOH 433 4 HOH HOH 532 A HOH 434 4 HOH HOH 533 A HOH 435 4 HOH HOH 534 A HOH 436 4 HOH HOH 535 A HOH 437 4 HOH HOH 536 A HOH 438 4 HOH HOH 537 A HOH 439 4 HOH HOH 538 A HOH 440 4 HOH HOH 539 A HOH 441 4 HOH HOH 540 A HOH 442 4 HOH HOH 541 A HOH 443 4 HOH HOH 542 A HOH 444 4 HOH HOH 543 A HOH 445 4 HOH HOH 544 A HOH 446 4 HOH HOH 545 A HOH 447 4 HOH HOH 546 A HOH 448 4 HOH HOH 547 A HOH 449 4 HOH HOH 548 A HOH 450 4 HOH HOH 549 A HOH 451 4 HOH HOH 550 A HOH 452 4 HOH HOH 551 A HOH 453 4 HOH HOH 552 A HOH 454 4 HOH HOH 553 A HOH 455 4 HOH HOH 554 A HOH 456 4 HOH HOH 555 A HOH 457 4 HOH HOH 556 A HOH 458 4 HOH HOH 557 A HOH 459 4 HOH HOH 558 A HOH 460 4 HOH HOH 559 A HOH 461 4 HOH HOH 560 A HOH 462 4 HOH HOH 561 A HOH 463 4 HOH HOH 562 A HOH 464 4 HOH HOH 563 A HOH 465 4 HOH HOH 564 A HOH 466 4 HOH HOH 565 A HOH 467 4 HOH HOH 566 A HOH 468 4 HOH HOH 567 A HOH 469 4 HOH HOH 568 A HOH 470 4 HOH HOH 569 A HOH 471 4 HOH HOH 570 A HOH 472 4 HOH HOH 571 A HOH 473 4 HOH HOH 572 A HOH 474 4 HOH HOH 573 A HOH 475 4 HOH HOH 574 A HOH 476 4 HOH HOH 575 A n 1 0 A n 2 27 A SER 28 n 3 SER 28 A GLY 29 n 4 GLY 29 A LYS 30 n 5 LYS 30 A LYS 31 n 6 LYS 31 A GLU 32 n 7 GLU 32 A ILE 33 n 8 ILE 33 A VAL 34 n 9 VAL 34 A VAL 35 n 10 VAL 35 A ALA 36 n 11 ALA 36 A ALA 37 n 12 ALA 37 A THR 38 n 13 THR 38 A LYS 39 n 14 LYS 39 A THR 40 n 15 THR 40 A PRO 41 n 16 PRO 41 A HIS 42 n 17 HIS 42 A ALA 43 n 18 ALA 43 A GLU 44 n 19 GLU 44 A ILE 45 n 20 ILE 45 A LEU 46 n 21 LEU 46 A LYS 47 n 22 LYS 47 A GLU 48 n 23 GLU 48 A ALA 49 n 24 ALA 49 A GLU 50 n 25 GLU 50 A PRO 51 n 26 PRO 51 A LEU 52 n 27 LEU 52 A LEU 53 n 28 LEU 53 A LYS 54 n 29 LYS 54 A GLU 55 n 30 GLU 55 A LYS 56 n 31 LYS 56 A GLY 57 n 32 GLY 57 A TYR 58 n 33 TYR 58 A THR 59 n 34 THR 59 A LEU 60 n 35 LEU 60 A LYS 61 n 36 LYS 61 A VAL 62 n 37 VAL 62 A LYS 63 n 38 LYS 63 A VAL 64 n 39 VAL 64 A LEU 65 n 40 LEU 65 A SER 66 n 41 SER 66 A ASP 67 n 42 ASP 67 A TYR 68 n 43 TYR 68 A LYS 69 n 44 LYS 69 A MSE 70 n 45 MSE 70 A TYR 71 n 46 TYR 71 A ASN 72 n 47 ASN 72 A LYS 73 n 48 LYS 73 A ALA 74 n 49 ALA 74 A LEU 75 n 50 LEU 75 A ALA 76 n 51 ALA 76 A ASP 77 n 52 ASP 77 A LYS 78 n 53 LYS 78 A GLU 79 n 54 GLU 79 A VAL 80 n 55 VAL 80 A ASP 81 n 56 ASP 81 A ALA 82 n 57 ALA 82 A ASN 83 n 58 ASN 83 A TYR 84 n 59 TYR 84 A PHE 85 n 60 PHE 85 A GLN 86 n 61 GLN 86 A HIS 87 n 62 HIS 87 A ILE 88 n 63 ILE 88 A PRO 89 n 64 PRO 89 A TYR 90 n 65 TYR 90 A LEU 91 n 66 LEU 91 A GLU 92 n 67 GLU 92 A GLN 93 n 68 GLN 93 A GLU 94 n 69 GLU 94 A MSE 95 n 70 MSE 95 A LYS 96 n 71 LYS 96 A GLU 97 n 72 GLU 97 A ASN 98 n 73 ASN 98 A THR 99 n 74 THR 99 A ASP 100 n 75 ASP 100 A TYR 101 n 76 TYR 101 A LYS 102 n 77 LYS 102 A LEU 103 n 78 LEU 103 A VAL 104 n 79 VAL 104 A ASN 105 n 80 ASN 105 A ALA 106 n 81 ALA 106 A GLY 107 n 82 GLY 107 A ALA 108 n 83 ALA 108 A VAL 109 n 84 VAL 109 A HIS 110 n 85 HIS 110 A LEU 111 n 86 LEU 111 A GLU 112 n 87 GLU 112 A PRO 113 n 88 PRO 113 A PHE 114 n 89 PHE 114 A GLY 115 n 90 GLY 115 A ILE 116 n 91 ILE 116 A TYR 117 n 92 TYR 117 A SER 118 n 93 SER 118 A LYS 119 n 94 LYS 119 A THR 120 n 95 THR 120 A TYR 121 n 96 TYR 121 A LYS 122 n 97 LYS 122 A SER 123 n 98 SER 123 A LEU 124 n 99 LEU 124 A LYS 125 n 100 LYS 125 A ASP 126 n 101 ASP 126 A LEU 127 n 102 LEU 127 A PRO 128 n 103 PRO 128 A ASP 129 n 104 ASP 129 A GLY 130 n 105 GLY 130 A ALA 131 n 106 ALA 131 A THR 132 n 107 THR 132 A ILE 133 n 108 ILE 133 A ILE 134 n 109 ILE 134 A LEU 135 n 110 LEU 135 A THR 136 n 111 THR 136 A ASN 137 n 112 ASN 137 A ASN 138 n 113 ASN 138 A VAL 139 n 114 VAL 139 A ALA 140 n 115 ALA 140 A GLU 141 n 116 GLU 141 A GLN 142 n 117 GLN 142 A GLY 143 n 118 GLY 143 A ARG 144 n 119 ARG 144 A MSE 145 n 120 MSE 145 A LEU 146 n 121 LEU 146 A ALA 147 n 122 ALA 147 A MSE 148 n 123 MSE 148 A LEU 149 n 124 LEU 149 A GLU 150 n 125 GLU 150 A ASN 151 n 126 ASN 151 A ALA 152 n 127 ALA 152 A GLY 153 n 128 GLY 153 A LEU 154 n 129 LEU 154 A ILE 155 n 130 ILE 155 A THR 156 n 131 THR 156 A LEU 157 n 132 LEU 157 A ASP 158 n 133 ASP 158 A SER 159 n 134 SER 159 A LYS 160 n 135 LYS 160 A VAL 161 n 136 VAL 161 A GLU 162 n 137 GLU 162 A THR 163 n 138 THR 163 A VAL 164 n 139 VAL 164 A ASP 165 n 140 ASP 165 A ALA 166 n 141 ALA 166 A THR 167 n 142 THR 167 A LEU 168 n 143 LEU 168 A LYS 169 n 144 LYS 169 A ASP 170 n 145 ASP 170 A ILE 171 n 146 ILE 171 A LYS 172 n 147 LYS 172 A LYS 173 n 148 LYS 173 A ASN 174 n 149 ASN 174 A PRO 175 n 150 PRO 175 A LYS 176 n 151 LYS 176 A ASN 177 n 152 ASN 177 A LEU 178 n 153 LEU 178 A GLU 179 n 154 GLU 179 A PHE 180 n 155 PHE 180 A LYS 181 n 156 LYS 181 A LYS 182 n 157 LYS 182 A VAL 183 n 158 VAL 183 A ALA 184 n 159 ALA 184 A PRO 185 n 160 PRO 185 A GLU 186 n 161 GLU 186 A LEU 187 n 162 LEU 187 A THR 188 n 163 THR 188 A ALA 189 n 164 ALA 189 A LYS 190 n 165 LYS 190 A ALA 191 n 166 ALA 191 A TYR 192 n 167 TYR 192 A GLU 193 n 168 GLU 193 A ASN 194 n 169 ASN 194 A LYS 195 n 170 LYS 195 A GLU 196 n 171 GLU 196 A GLY 197 n 172 GLY 197 A ASP 198 n 173 ASP 198 A ALA 199 n 174 ALA 199 A VAL 200 n 175 VAL 200 A PHE 201 n 176 PHE 201 A ILE 202 n 177 ILE 202 A ASN 203 n 178 ASN 203 A VAL 204 n 179 VAL 204 A ASN 205 n 180 ASN 205 A TYR 206 n 181 TYR 206 A ALA 207 n 182 ALA 207 A ILE 208 n 183 ILE 208 A GLN 209 n 184 GLN 209 A ASN 210 n 185 ASN 210 A LYS 211 n 186 LYS 211 A LEU 212 n 187 LEU 212 A ASN 213 n 188 ASN 213 A PRO 214 n 189 PRO 214 A LYS 215 n 190 LYS 215 A LYS 216 n 191 LYS 216 A ASP 217 n 192 ASP 217 A ALA 218 n 193 ALA 218 A ILE 219 n 194 ILE 219 A GLU 220 n 195 GLU 220 A VAL 221 n 196 VAL 221 A GLU 222 n 197 GLU 222 A SER 223 n 198 SER 223 A THR 224 n 199 THR 224 A LYS 225 n 200 LYS 225 A ASN 226 n 201 ASN 226 A ASN 227 n 202 ASN 227 A PRO 228 n 203 PRO 228 A TYR 229 n 204 TYR 229 A ALA 230 n 205 ALA 230 A ASN 231 n 206 ASN 231 A ILE 232 n 207 ILE 232 A ILE 233 n 208 ILE 233 A ALA 234 n 209 ALA 234 A VAL 235 n 210 VAL 235 A ARG 236 n 211 ARG 236 A LYS 237 n 212 LYS 237 A GLY 238 n 213 GLY 238 A GLU 239 n 214 GLU 239 A GLU 240 n 215 GLU 240 A ASP 241 n 216 ASP 241 A SER 242 n 217 SER 242 A ALA 243 n 218 ALA 243 A LYS 244 n 219 LYS 244 A ILE 245 n 220 ILE 245 A LYS 246 n 221 LYS 246 A ALA 247 n 222 ALA 247 A LEU 248 n 223 LEU 248 A MSE 249 n 224 MSE 249 A GLU 250 n 225 GLU 250 A VAL 251 n 226 VAL 251 A LEU 252 n 227 LEU 252 A HIS 253 n 228 HIS 253 A SER 254 n 229 SER 254 A LYS 255 n 230 LYS 255 A LYS 256 n 231 LYS 256 A ILE 257 n 232 ILE 257 A LYS 258 n 233 LYS 258 A ASP 259 n 234 ASP 259 A PHE 260 n 235 PHE 260 A ILE 261 n 236 ILE 261 A GLU 262 n 237 GLU 262 A LYS 263 n 238 LYS 263 A LYS 264 n 239 LYS 264 A TYR 265 n 240 TYR 265 A ASP 266 n 241 ASP 266 A GLY 267 n 242 GLY 267 A ALA 268 n 243 ALA 268 A VAL 269 n 244 VAL 269 A LEU 270 n 245 LEU 270 A PRO 271 n 246 PRO 271 A VAL 272 n 247 VAL 272 A SER 273 n 248 SER 273 A GLU 274 n 249 GLU 274 A 2.1007 -0.1736 1.0916 0.9725 0.2095 2.2766 0.0196 -0.1175 -0.0024 -0.0103 0.0121 0.0510 0.0441 -0.1261 -0.0317 0.0645 -0.0014 0.1195 0.1361 0.0101 0.2354 refined 39.2850 18.5800 25.3130 X-RAY DIFFRACTION A 28 A 274 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 1 monomeric A MSE 70 SELENOMETHIONINE A MSE 45 MET A MSE 95 SELENOMETHIONINE A MSE 70 MET A MSE 145 SELENOMETHIONINE A MSE 120 MET A MSE 148 SELENOMETHIONINE A MSE 123 MET A MSE 249 SELENOMETHIONINE A MSE 224 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LYS 61 A O LYS 36 A N VAL 35 A N VAL 10 A N ALA 36 A N ALA 11 A O ALA 82 A O ALA 57 A N ASN 83 A N ASN 58 A O ALA 234 A O ALA 209 A O ASN 231 A O ASN 206 A N HIS 110 A N HIS 85 A N LEU 111 A N LEU 86 A O LEU 270 A O LEU 245 A O GLU 179 A O GLU 154 A N ILE 133 A N ILE 108 A N ILE 134 A N ILE 109 A O ALA 199 A O ALA 174 A O VAL 200 A O VAL 175 A N TYR 117 A N TYR 92 A N ILE 116 A N ILE 91 A O GLU 220 A O GLU 195 A N THR 156 A N THR 131 A O LYS 172 A O LYS 147 1 A GLY 0 A GLY 1 1 Y 1 A GLU 27 A GLU 2 1 Y 1 A A OE2 O GLU HOH 220 548 2.19 1 A PHE 85 -162.18 -17.90 1 A ASN 138 -69.69 99.78 114.010 36.9041 17.070 -1.3500 0.0000 -3.6100 -0.0500 0.0000 0.0300 0.9620 0.9360 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. A SULFATE ION (SO4) FROM THE CRYSTALLIZATION SOLUTION IS MODELED. 7. A SELENOMETHIONINE RESIDUE IS MODELED IN THE ACTIVE SITE BASED ON ELECTRON DENSITY AND ANOMALOUS DIFFERENCE FOURIER MAP. 8. RAMACHANDRAN OUTLIER PHE 85 IS SUPPORTED BY ELECTRON DENSITY AND IS LIKELY A DISTORTION CAUSED BY LIGAND BINDING. 0.2286 0.1717 0.1747 1.9500 44.561 876 16950 5.2000 90.2400 1.000 0.300 7.9970 0.1230 RANDOM 1 THROUGHOUT 0.000 SAD 0.1900 0.1720 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD WITH PHASES BABINET MODEL WITH MASK 1.9500 44.561 175 2135 14 0 1946 0.015 0.020 2017 0.001 0.020 1375 1.602 1.998 2726 0.969 3.000 3432 6.147 5.000 256 39.433 27.024 84 15.125 15.000 405 13.443 15.000 2 0.092 0.200 315 0.007 0.021 2184 0.001 0.020 330 0.3160 0.2550 2.0040 33 636 669 20 50.0400 24.420 1.95 44.561 4GOT 16953 -3.000 0.102 1 11.540 89.900 0.588 1.950 2.020 2.2 3873 935 1 50.800 0.496 2.020 2.100 2.9 6211 1303 1 69.800 0.380 2.100 2.200 4.1 9148 1676 1 86.200 0.310 2.200 2.310 6.0 11572 1756 1 99.100 0.232 2.310 2.460 7.4 12964 1922 1 99.100 0.179 2.460 2.650 9.1 12083 1859 1 98.600 0.138 2.650 2.910 11.9 12255 1813 1 99.400 0.090 2.910 3.330 16.2 12126 1867 1 98.200 0.063 3.330 4.190 22.0 11996 1870 1 98.200 0.061 4.190 24.6 12425 1952 1 98.300 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package phasing Eric de La Fortelle sharp-develop@globalphasing.com http://www.globalphasing.com/sharp/ SHARP package data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package March 15, 2012 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.6.0117 data reduction XDS phasing SHELXD Crystal structure of a putative methionine-binding lipoprotein (BSU32730) from Bacillus subtilis subsp. subtilis str. 168 at 1.95 A resolution 1 N N 2 N N 3 N N 4 N N CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. A PRO 41 A PRO 16 HELX_P A GLU 55 A GLU 30 1 1 15 A LYS 69 A LYS 44 HELX_P A ASP 77 A ASP 52 1 2 9 A HIS 87 A HIS 62 HELX_P A ASN 98 A ASN 73 1 3 12 A SER 123 A SER 98 HELX_P A LEU 127 A LEU 102 5 4 5 A ASN 138 A ASN 113 HELX_P A ALA 140 A ALA 115 5 5 3 A GLU 141 A GLU 116 HELX_P A ALA 152 A ALA 127 1 6 12 A GLU 162 A GLU 137 HELX_P A ALA 166 A ALA 141 5 7 5 A THR 167 A THR 142 HELX_P A LYS 169 A LYS 144 5 8 3 A LEU 187 A LEU 162 HELX_P A ASN 194 A ASN 169 1 9 8 A ASN 203 A ASN 178 HELX_P A ASN 210 A ASN 185 1 10 8 A ASN 213 A ASN 188 HELX_P A ALA 218 A ALA 193 1 11 6 A SER 242 A SER 217 HELX_P A HIS 253 A HIS 228 1 12 12 A SER 254 A SER 229 HELX_P A TYR 265 A TYR 240 1 13 12 covale 1.336 both A LYS 69 A C LYS 44 1_555 A MSE 70 A N MSE 45 1_555 covale 1.330 both A MSE 70 A C MSE 45 1_555 A TYR 71 A N TYR 46 1_555 covale 1.330 both A GLU 94 A C GLU 69 1_555 A MSE 95 A N MSE 70 1_555 covale 1.336 both A MSE 95 A C MSE 70 1_555 A LYS 96 A N LYS 71 1_555 covale 1.329 both A ARG 144 A C ARG 119 1_555 A MSE 145 A N MSE 120 1_555 covale 1.329 both A MSE 145 A C MSE 120 1_555 A LEU 146 A N LEU 121 1_555 covale 1.331 both A ALA 147 A C ALA 122 1_555 A MSE 148 A N MSE 123 1_555 covale 1.332 both A MSE 148 A C MSE 123 1_555 A LEU 149 A N LEU 124 1_555 covale 1.339 both A LEU 248 A C LEU 223 1_555 A MSE 249 A N MSE 224 1_555 covale 1.336 both A MSE 249 A C MSE 224 1_555 A GLU 250 A N GLU 225 1_555 LIPID BINDING PROTEIN NLPA lipoprotein, PF03180 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, METHIONINE-BINDING PROTEIN, LIPID BINDING PROTEIN A THR 40 A THR 15 1 A PRO 41 A PRO 16 3.72 METQ_BACSU UNP 1 27 O32167 ESGKKEIVVAATKTPHAEILKEAEPLLKEKGYTLKVKVLSDYKMYNKALADKEVDANYFQHIPYLEQEMKENTDYKLVNA GAVHLEPFGIYSKTYKSLKDLPDGATIILTNNVAEQGRMLAMLENAGLITLDSKVETVDATLKDIKKNPKNLEFKKVAPE LTAKAYENKEGDAVFINVNYAIQNKLNPKKDAIEVESTKNNPYANIIAVRKGEEDSAKIKALMEVLHSKKIKDFIEKKYD GAVLPVSE 27 274 4GOT 27 274 O32167 A 1 2 249 1 expression tag GLY 0 4GOT A O32167 UNP 1 6 5 2 parallel parallel anti-parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel A THR 59 A THR 34 A LYS 63 A LYS 38 A GLU 32 A GLU 7 A ALA 37 A ALA 12 A ALA 82 A ALA 57 A TYR 84 A TYR 59 A ASN 231 A ASN 206 A ARG 236 A ARG 211 A LEU 103 A LEU 78 A LEU 111 A LEU 86 A LEU 270 A LEU 245 A PRO 271 A PRO 246 A GLU 179 A GLU 154 A VAL 183 A VAL 158 A THR 132 A THR 107 A THR 136 A THR 111 A ALA 199 A ALA 174 A ILE 202 A ILE 177 A GLY 115 A GLY 90 A TYR 117 A TYR 92 A GLU 220 A GLU 195 A VAL 221 A VAL 196 A THR 156 A THR 131 A LEU 157 A LEU 132 A ILE 171 A ILE 146 A LYS 173 A LYS 148 BINDING SITE FOR RESIDUE SO4 A 301 A SO4 301 Software 3 A LYS 31 A LYS 6 3 1_555 A LYS 237 A LYS 212 3 4_545 A LYS 256 A LYS 231 3 4_555 5 C 1 2 1