0.016502
0.000000
0.000000
-0.000000
0.011187
0.000000
0.000000
-0.000000
0.006720
0.00000
0.00000
0.00000
Patskovsky, Y.
Toro, R.
Bhosle, R.
Hillerich, B.
Seidel, R.D.
Washington, E.
Scott Glenn, A.
Chowdhury, S.
Evans, B.
Hammonds, J.
Zencheck, W.D.
Imker, H.J.
Poulter, C.D.
Gerlt, J.A.
Almo, S.C.
Enzyme Function Initiative (EFI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
60.598
89.393
148.806
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C5 H12 O7 P2
246.092
DIMETHYLALLYL DIPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H18 O5
194.226
TETRAETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
C
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
C
N
81
R
P
N
82
N
O
N
83
N
O
N
84
N
O
N
85
N
P
N
86
N
O
N
87
N
O
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
N
N
102
S
C
N
103
N
C
N
104
N
O
N
105
N
C
N
106
N
C
N
107
N
C
N
108
N
O
N
109
N
N
N
110
N
O
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
N
N
122
S
C
N
123
N
C
N
124
N
O
N
125
N
C
N
126
N
C
N
127
N
C
N
128
N
O
N
129
N
O
N
130
N
O
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
N
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
Y
155
N
C
Y
156
N
N
Y
157
N
C
Y
158
N
C
Y
159
N
N
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
S
C
N
179
N
C
N
180
N
C
N
181
N
C
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
S
C
N
198
N
C
N
199
N
O
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
N
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
S
N
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
N
322
N
C
N
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
O
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
R
C
N
353
N
O
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
N
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
O
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
Y
152
N
sing
Y
153
N
doub
Y
154
N
doub
N
155
N
sing
Y
156
N
sing
N
157
N
sing
Y
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
Y
290
N
doub
Y
291
N
sing
Y
292
N
sing
N
293
N
sing
Y
294
N
doub
N
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
Y
359
N
doub
Y
360
N
sing
Y
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
Y
387
N
doub
Y
388
N
sing
Y
389
N
sing
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
To be Published
0353
Crystal Structure of Isoprenoid Synthase from Pyrobaculum Calidifontis
10.2210/pdb4gp1/pdb
pdb_00004gp1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
MIRRORS
CCD
2012-07-17
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.075
1.0
X29A
NSLS
1.075
SYNCHROTRON
NSLS BEAMLINE X29A
40151.848
Polyprenyl synthetase
1
man
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
246.092
DIMETHYLALLYL DIPHOSPHATE
1
syn
non-polymer
194.226
TETRAETHYLENE GLYCOL
1
syn
non-polymer
18.015
water
292
nat
water
no
no
MVMDVVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNY
SLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRS
DPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKE
IGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPN
NGTLKELLDFIVAREYAENLYFQSHHHHHHWSHPQFEK
MVMDVVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNY
SLIYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRS
DPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKE
IGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPN
NGTLKELLDFIVAREYAENLYFQSHHHHHHWSHPQFEK
A
EFI-501992
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
JCM 11548/VA1
sample
Pcal_0150
410359
Pyrobaculum calidifontis
469008
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PET
2.52
51.25
7.5
0.2M SODIUM ACETATE, PH 7.5, 20% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Enzyme Function Initiative
audit_author
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Structure summary
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-08-29
1
1
2018-01-24
1
2
2023-09-13
_audit_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
UN-LIGANDED STRUCTURE
COMPLEX WITH DMAPP and Magnesium
Y
RCSB
Y
RCSB
2012-08-20
REL
REL
CL
CHLORIDE ION
DMA
DIMETHYLALLYL DIPHOSPHATE
PG4
TETRAETHYLENE GLYCOL
HOH
water
4DHD
PDB ENTRY 4DHD
PDB
experimental model
CL
1
2
CL
CL
401
A
DMA
1
3
DMA
DMA
402
A
PG4
1
4
PG4
PG4
403
A
HOH
1
5
HOH
HOH
501
A
HOH
3
5
HOH
HOH
502
A
HOH
4
5
HOH
HOH
503
A
HOH
5
5
HOH
HOH
504
A
HOH
6
5
HOH
HOH
505
A
HOH
7
5
HOH
HOH
506
A
HOH
8
5
HOH
HOH
507
A
HOH
9
5
HOH
HOH
508
A
HOH
10
5
HOH
HOH
509
A
HOH
11
5
HOH
HOH
510
A
HOH
12
5
HOH
HOH
511
A
HOH
13
5
HOH
HOH
512
A
HOH
14
5
HOH
HOH
513
A
HOH
15
5
HOH
HOH
514
A
HOH
16
5
HOH
HOH
515
A
HOH
17
5
HOH
HOH
516
A
HOH
18
5
HOH
HOH
517
A
HOH
19
5
HOH
HOH
518
A
HOH
20
5
HOH
HOH
519
A
HOH
21
5
HOH
HOH
520
A
HOH
22
5
HOH
HOH
521
A
HOH
23
5
HOH
HOH
522
A
HOH
24
5
HOH
HOH
523
A
HOH
25
5
HOH
HOH
524
A
HOH
26
5
HOH
HOH
525
A
HOH
27
5
HOH
HOH
526
A
HOH
28
5
HOH
HOH
527
A
HOH
29
5
HOH
HOH
528
A
HOH
30
5
HOH
HOH
529
A
HOH
31
5
HOH
HOH
530
A
HOH
32
5
HOH
HOH
531
A
HOH
33
5
HOH
HOH
532
A
HOH
34
5
HOH
HOH
533
A
HOH
35
5
HOH
HOH
534
A
HOH
36
5
HOH
HOH
535
A
HOH
37
5
HOH
HOH
536
A
HOH
38
5
HOH
HOH
537
A
HOH
40
5
HOH
HOH
538
A
HOH
41
5
HOH
HOH
539
A
HOH
42
5
HOH
HOH
540
A
HOH
43
5
HOH
HOH
541
A
HOH
44
5
HOH
HOH
542
A
HOH
45
5
HOH
HOH
543
A
HOH
46
5
HOH
HOH
544
A
HOH
47
5
HOH
HOH
545
A
HOH
48
5
HOH
HOH
546
A
HOH
49
5
HOH
HOH
547
A
HOH
50
5
HOH
HOH
548
A
HOH
52
5
HOH
HOH
549
A
HOH
54
5
HOH
HOH
550
A
HOH
55
5
HOH
HOH
551
A
HOH
56
5
HOH
HOH
552
A
HOH
57
5
HOH
HOH
553
A
HOH
58
5
HOH
HOH
554
A
HOH
59
5
HOH
HOH
555
A
HOH
60
5
HOH
HOH
556
A
HOH
61
5
HOH
HOH
557
A
HOH
62
5
HOH
HOH
558
A
HOH
63
5
HOH
HOH
559
A
HOH
64
5
HOH
HOH
560
A
HOH
65
5
HOH
HOH
561
A
HOH
66
5
HOH
HOH
562
A
HOH
67
5
HOH
HOH
563
A
HOH
68
5
HOH
HOH
564
A
HOH
69
5
HOH
HOH
565
A
HOH
70
5
HOH
HOH
566
A
HOH
71
5
HOH
HOH
567
A
HOH
72
5
HOH
HOH
568
A
HOH
73
5
HOH
HOH
569
A
HOH
74
5
HOH
HOH
570
A
HOH
75
5
HOH
HOH
571
A
HOH
76
5
HOH
HOH
572
A
HOH
77
5
HOH
HOH
573
A
HOH
78
5
HOH
HOH
574
A
HOH
80
5
HOH
HOH
575
A
HOH
81
5
HOH
HOH
576
A
HOH
82
5
HOH
HOH
577
A
HOH
83
5
HOH
HOH
578
A
HOH
84
5
HOH
HOH
579
A
HOH
85
5
HOH
HOH
580
A
HOH
86
5
HOH
HOH
581
A
HOH
87
5
HOH
HOH
582
A
HOH
88
5
HOH
HOH
583
A
HOH
89
5
HOH
HOH
584
A
HOH
90
5
HOH
HOH
585
A
HOH
91
5
HOH
HOH
586
A
HOH
92
5
HOH
HOH
587
A
HOH
93
5
HOH
HOH
588
A
HOH
96
5
HOH
HOH
589
A
HOH
97
5
HOH
HOH
590
A
HOH
98
5
HOH
HOH
591
A
HOH
99
5
HOH
HOH
592
A
HOH
100
5
HOH
HOH
593
A
HOH
101
5
HOH
HOH
594
A
HOH
102
5
HOH
HOH
595
A
HOH
103
5
HOH
HOH
596
A
HOH
104
5
HOH
HOH
597
A
HOH
105
5
HOH
HOH
598
A
HOH
106
5
HOH
HOH
599
A
HOH
107
5
HOH
HOH
600
A
HOH
108
5
HOH
HOH
601
A
HOH
109
5
HOH
HOH
602
A
HOH
110
5
HOH
HOH
603
A
HOH
111
5
HOH
HOH
604
A
HOH
112
5
HOH
HOH
605
A
HOH
113
5
HOH
HOH
606
A
HOH
115
5
HOH
HOH
607
A
HOH
116
5
HOH
HOH
608
A
HOH
118
5
HOH
HOH
609
A
HOH
119
5
HOH
HOH
610
A
HOH
120
5
HOH
HOH
611
A
HOH
121
5
HOH
HOH
612
A
HOH
122
5
HOH
HOH
613
A
HOH
123
5
HOH
HOH
614
A
HOH
124
5
HOH
HOH
615
A
HOH
126
5
HOH
HOH
616
A
HOH
127
5
HOH
HOH
617
A
HOH
128
5
HOH
HOH
618
A
HOH
129
5
HOH
HOH
619
A
HOH
130
5
HOH
HOH
620
A
HOH
131
5
HOH
HOH
621
A
HOH
132
5
HOH
HOH
622
A
HOH
134
5
HOH
HOH
623
A
HOH
137
5
HOH
HOH
624
A
HOH
138
5
HOH
HOH
625
A
HOH
139
5
HOH
HOH
626
A
HOH
140
5
HOH
HOH
627
A
HOH
141
5
HOH
HOH
628
A
HOH
142
5
HOH
HOH
629
A
HOH
143
5
HOH
HOH
630
A
HOH
144
5
HOH
HOH
631
A
HOH
146
5
HOH
HOH
632
A
HOH
148
5
HOH
HOH
633
A
HOH
150
5
HOH
HOH
634
A
HOH
151
5
HOH
HOH
635
A
HOH
152
5
HOH
HOH
636
A
HOH
153
5
HOH
HOH
637
A
HOH
154
5
HOH
HOH
638
A
HOH
156
5
HOH
HOH
639
A
HOH
158
5
HOH
HOH
640
A
HOH
159
5
HOH
HOH
641
A
HOH
160
5
HOH
HOH
642
A
HOH
161
5
HOH
HOH
643
A
HOH
162
5
HOH
HOH
644
A
HOH
163
5
HOH
HOH
645
A
HOH
164
5
HOH
HOH
646
A
HOH
165
5
HOH
HOH
647
A
HOH
166
5
HOH
HOH
648
A
HOH
168
5
HOH
HOH
649
A
HOH
169
5
HOH
HOH
650
A
HOH
171
5
HOH
HOH
651
A
HOH
173
5
HOH
HOH
652
A
HOH
174
5
HOH
HOH
653
A
HOH
175
5
HOH
HOH
654
A
HOH
176
5
HOH
HOH
655
A
HOH
177
5
HOH
HOH
656
A
HOH
178
5
HOH
HOH
657
A
HOH
180
5
HOH
HOH
658
A
HOH
181
5
HOH
HOH
659
A
HOH
183
5
HOH
HOH
660
A
HOH
184
5
HOH
HOH
661
A
HOH
185
5
HOH
HOH
662
A
HOH
186
5
HOH
HOH
663
A
HOH
187
5
HOH
HOH
664
A
HOH
188
5
HOH
HOH
665
A
HOH
189
5
HOH
HOH
666
A
HOH
190
5
HOH
HOH
667
A
HOH
191
5
HOH
HOH
668
A
HOH
192
5
HOH
HOH
669
A
HOH
193
5
HOH
HOH
670
A
HOH
194
5
HOH
HOH
671
A
HOH
195
5
HOH
HOH
672
A
HOH
197
5
HOH
HOH
673
A
HOH
198
5
HOH
HOH
674
A
HOH
199
5
HOH
HOH
675
A
HOH
200
5
HOH
HOH
676
A
HOH
204
5
HOH
HOH
677
A
HOH
205
5
HOH
HOH
678
A
HOH
206
5
HOH
HOH
679
A
HOH
207
5
HOH
HOH
680
A
HOH
209
5
HOH
HOH
681
A
HOH
210
5
HOH
HOH
682
A
HOH
211
5
HOH
HOH
683
A
HOH
212
5
HOH
HOH
684
A
HOH
214
5
HOH
HOH
685
A
HOH
215
5
HOH
HOH
686
A
HOH
216
5
HOH
HOH
687
A
HOH
217
5
HOH
HOH
688
A
HOH
219
5
HOH
HOH
689
A
HOH
221
5
HOH
HOH
690
A
HOH
223
5
HOH
HOH
691
A
HOH
224
5
HOH
HOH
692
A
HOH
225
5
HOH
HOH
693
A
HOH
226
5
HOH
HOH
694
A
HOH
227
5
HOH
HOH
695
A
HOH
229
5
HOH
HOH
696
A
HOH
230
5
HOH
HOH
697
A
HOH
232
5
HOH
HOH
698
A
HOH
233
5
HOH
HOH
699
A
HOH
234
5
HOH
HOH
700
A
HOH
236
5
HOH
HOH
701
A
HOH
237
5
HOH
HOH
702
A
HOH
238
5
HOH
HOH
703
A
HOH
239
5
HOH
HOH
704
A
HOH
240
5
HOH
HOH
705
A
HOH
241
5
HOH
HOH
706
A
HOH
242
5
HOH
HOH
707
A
HOH
243
5
HOH
HOH
708
A
HOH
244
5
HOH
HOH
709
A
HOH
245
5
HOH
HOH
710
A
HOH
246
5
HOH
HOH
711
A
HOH
250
5
HOH
HOH
712
A
HOH
251
5
HOH
HOH
713
A
HOH
252
5
HOH
HOH
714
A
HOH
253
5
HOH
HOH
715
A
HOH
254
5
HOH
HOH
716
A
HOH
255
5
HOH
HOH
717
A
HOH
256
5
HOH
HOH
718
A
HOH
257
5
HOH
HOH
719
A
HOH
259
5
HOH
HOH
720
A
HOH
260
5
HOH
HOH
721
A
HOH
262
5
HOH
HOH
722
A
HOH
264
5
HOH
HOH
723
A
HOH
265
5
HOH
HOH
724
A
HOH
266
5
HOH
HOH
725
A
HOH
267
5
HOH
HOH
726
A
HOH
269
5
HOH
HOH
727
A
HOH
270
5
HOH
HOH
728
A
HOH
271
5
HOH
HOH
729
A
HOH
272
5
HOH
HOH
730
A
HOH
273
5
HOH
HOH
731
A
HOH
274
5
HOH
HOH
732
A
HOH
275
5
HOH
HOH
733
A
HOH
276
5
HOH
HOH
734
A
HOH
277
5
HOH
HOH
735
A
HOH
278
5
HOH
HOH
736
A
HOH
279
5
HOH
HOH
737
A
HOH
280
5
HOH
HOH
738
A
HOH
281
5
HOH
HOH
739
A
HOH
282
5
HOH
HOH
740
A
HOH
283
5
HOH
HOH
741
A
HOH
284
5
HOH
HOH
742
A
HOH
285
5
HOH
HOH
743
A
HOH
286
5
HOH
HOH
744
A
HOH
287
5
HOH
HOH
745
A
HOH
290
5
HOH
HOH
746
A
HOH
291
5
HOH
HOH
747
A
HOH
292
5
HOH
HOH
748
A
HOH
293
5
HOH
HOH
749
A
HOH
294
5
HOH
HOH
750
A
HOH
295
5
HOH
HOH
751
A
HOH
297
5
HOH
HOH
752
A
HOH
298
5
HOH
HOH
753
A
HOH
299
5
HOH
HOH
754
A
HOH
300
5
HOH
HOH
755
A
HOH
301
5
HOH
HOH
756
A
HOH
302
5
HOH
HOH
757
A
HOH
303
5
HOH
HOH
758
A
HOH
304
5
HOH
HOH
759
A
HOH
307
5
HOH
HOH
760
A
HOH
308
5
HOH
HOH
761
A
HOH
311
5
HOH
HOH
762
A
HOH
312
5
HOH
HOH
763
A
HOH
314
5
HOH
HOH
764
A
HOH
321
5
HOH
HOH
765
A
HOH
322
5
HOH
HOH
766
A
HOH
325
5
HOH
HOH
767
A
HOH
327
5
HOH
HOH
768
A
HOH
328
5
HOH
HOH
769
A
HOH
329
5
HOH
HOH
770
A
HOH
330
5
HOH
HOH
771
A
HOH
331
5
HOH
HOH
772
A
HOH
332
5
HOH
HOH
773
A
HOH
333
5
HOH
HOH
774
A
HOH
335
5
HOH
HOH
775
A
HOH
336
5
HOH
HOH
776
A
HOH
337
5
HOH
HOH
777
A
HOH
338
5
HOH
HOH
778
A
HOH
339
5
HOH
HOH
779
A
HOH
340
5
HOH
HOH
780
A
HOH
341
5
HOH
HOH
781
A
HOH
342
5
HOH
HOH
782
A
HOH
343
5
HOH
HOH
783
A
HOH
344
5
HOH
HOH
784
A
HOH
345
5
HOH
HOH
785
A
HOH
346
5
HOH
HOH
786
A
HOH
347
5
HOH
HOH
787
A
HOH
348
5
HOH
HOH
788
A
HOH
349
5
HOH
HOH
789
A
HOH
350
5
HOH
HOH
790
A
HOH
351
5
HOH
HOH
791
A
HOH
352
5
HOH
HOH
792
A
n
1
1
A
n
2
2
A
MET
3
n
3
MET
3
A
ASP
4
n
4
ASP
4
A
VAL
5
n
5
VAL
5
A
VAL
6
n
6
VAL
6
A
SER
7
n
7
SER
7
A
ARG
8
n
8
ARG
8
A
LEU
9
n
9
LEU
9
A
HIS
10
n
10
HIS
10
A
GLN
11
n
11
GLN
11
A
LYS
12
n
12
LYS
12
A
TYR
13
n
13
TYR
13
A
GLY
14
n
14
GLY
14
A
ALA
15
n
15
ALA
15
A
GLU
16
n
16
GLU
16
A
VAL
17
n
17
VAL
17
A
GLU
18
n
18
GLU
18
A
LYS
19
n
19
LYS
19
A
ALA
20
n
20
ALA
20
A
LEU
21
n
21
LEU
21
A
VAL
22
n
22
VAL
22
A
ARG
23
n
23
ARG
23
A
TYR
24
n
24
TYR
24
A
LEU
25
n
25
LEU
25
A
SER
26
n
26
SER
26
A
ILE
27
n
27
ILE
27
A
GLY
28
n
28
GLY
28
A
LEU
29
n
29
LEU
29
A
ALA
30
n
30
ALA
30
A
GLU
31
n
31
GLU
31
A
ASP
32
n
32
ASP
32
A
PHE
33
n
33
PHE
33
A
ARG
34
n
34
ARG
34
A
GLU
35
n
35
GLU
35
A
ALA
36
n
36
ALA
36
A
VAL
37
n
37
VAL
37
A
LEU
38
n
38
LEU
38
A
TYR
39
n
39
TYR
39
A
GLN
40
n
40
GLN
40
A
VAL
41
n
41
VAL
41
A
LYS
42
n
42
LYS
42
A
THR
43
n
43
THR
43
A
GLY
44
n
44
GLY
44
A
GLY
45
n
45
GLY
45
A
LYS
46
n
46
LYS
46
A
ARG
47
n
47
ARG
47
A
LEU
48
n
48
LEU
48
A
ARG
49
n
49
ARG
49
A
PRO
50
n
50
PRO
50
A
LEU
51
n
51
LEU
51
A
LEU
52
n
52
LEU
52
A
THR
53
n
53
THR
53
A
LEU
54
n
54
LEU
54
A
ALA
55
n
55
ALA
55
A
ALA
56
n
56
ALA
56
A
ALA
57
n
57
ALA
57
A
GLU
58
n
58
GLU
58
A
ALA
59
n
59
ALA
59
A
VAL
60
n
60
VAL
60
A
SER
61
n
61
SER
61
A
GLY
62
n
62
GLY
62
A
GLN
63
n
63
GLN
63
A
TRP
64
n
64
TRP
64
A
ARG
65
n
65
ARG
65
A
PRO
66
n
66
PRO
66
A
ALA
67
n
67
ALA
67
A
LEU
68
n
68
LEU
68
A
PRO
69
n
69
PRO
69
A
ALA
70
n
70
ALA
70
A
ALA
71
n
71
ALA
71
A
ALA
72
n
72
ALA
72
A
ILE
73
n
73
ILE
73
A
VAL
74
n
74
VAL
74
A
GLU
75
n
75
GLU
75
A
LEU
76
n
76
LEU
76
A
ILE
77
n
77
ILE
77
A
HIS
78
n
78
HIS
78
A
ASN
79
n
79
ASN
79
A
TYR
80
n
80
TYR
80
A
SER
81
n
81
SER
81
A
LEU
82
n
82
LEU
82
A
ILE
83
n
83
ILE
83
A
TYR
84
n
84
TYR
84
A
ASP
85
n
85
ASP
85
A
ASP
86
n
86
ASP
86
A
ILE
87
n
87
ILE
87
A
ILE
88
n
88
ILE
88
A
ASP
89
n
89
ASP
89
A
ARG
90
n
90
ARG
90
A
GLY
91
n
91
GLY
91
A
ASP
92
n
92
ASP
92
A
VAL
93
n
93
VAL
93
A
ARG
94
n
94
ARG
94
A
ARG
95
n
95
ARG
95
A
GLY
96
n
96
GLY
96
A
LEU
97
n
97
LEU
97
A
PRO
98
n
98
PRO
98
A
THR
99
n
99
THR
99
A
VAL
100
n
100
VAL
100
A
ARG
101
n
101
ARG
101
A
LYS
102
n
102
LYS
102
A
ALA
103
n
103
ALA
103
A
PHE
104
n
104
PHE
104
A
GLY
105
n
105
GLY
105
A
ASP
106
n
106
ASP
106
A
ASN
107
n
107
ASN
107
A
ALA
108
n
108
ALA
108
A
ALA
109
n
109
ALA
109
A
ILE
110
n
110
ILE
110
A
LEU
111
n
111
LEU
111
A
VAL
112
n
112
VAL
112
A
GLY
113
n
113
GLY
113
A
ILE
114
n
114
ILE
114
A
TRP
115
n
115
TRP
115
A
TYR
116
n
116
TYR
116
A
ARG
117
n
117
ARG
117
A
GLU
118
n
118
GLU
118
A
ALA
119
n
119
ALA
119
A
ILE
120
n
120
ILE
120
A
GLU
121
n
121
GLU
121
A
GLU
122
n
122
GLU
122
A
ALA
123
n
123
ALA
123
A
VAL
124
n
124
VAL
124
A
LEU
125
n
125
LEU
125
A
ASP
126
n
126
ASP
126
A
THR
127
n
127
THR
127
A
PRO
128
n
128
PRO
128
A
LYS
129
n
129
LYS
129
A
PRO
130
n
130
PRO
130
A
THR
131
n
131
THR
131
A
LEU
132
n
132
LEU
132
A
PHE
133
n
133
PHE
133
A
ALA
134
n
134
ALA
134
A
LYS
135
n
135
LYS
135
A
GLU
136
n
136
GLU
136
A
VAL
137
n
137
VAL
137
A
ALA
138
n
138
ALA
138
A
GLU
139
n
139
GLU
139
A
VAL
140
n
140
VAL
140
A
ILE
141
n
141
ILE
141
A
LYS
142
n
142
LYS
142
A
ALA
143
n
143
ALA
143
A
ILE
144
n
144
ILE
144
A
ASP
145
n
145
ASP
145
A
GLU
146
n
146
GLU
146
A
GLY
147
n
147
GLY
147
A
GLU
148
n
148
GLU
148
A
ARG
149
n
149
ARG
149
A
LEU
150
n
150
LEU
150
A
ASP
151
n
151
ASP
151
A
ILE
152
n
152
ILE
152
A
LEU
153
n
153
LEU
153
A
PHE
154
n
154
PHE
154
A
GLU
155
n
155
GLU
155
A
ALA
156
n
156
ALA
156
A
ALA
157
n
157
ALA
157
A
GLY
158
n
158
GLY
158
A
ARG
159
n
159
ARG
159
A
SER
160
n
160
SER
160
A
ASP
161
n
161
ASP
161
A
PRO
162
n
162
PRO
162
A
TYR
163
n
163
TYR
163
A
PHE
164
n
164
PHE
164
A
VAL
165
n
165
VAL
165
A
GLN
166
n
166
GLN
166
A
ALA
167
n
167
ALA
167
A
ARG
168
n
168
ARG
168
A
TRP
169
n
169
TRP
169
A
ARG
170
n
170
ARG
170
A
GLU
171
n
171
GLU
171
A
VAL
172
n
172
VAL
172
A
THR
173
n
173
THR
173
A
LEU
174
n
174
LEU
174
A
ASP
175
n
175
ASP
175
A
ASP
176
n
176
ASP
176
A
TYR
177
n
177
TYR
177
A
ILE
178
n
178
ILE
178
A
LYS
179
n
179
LYS
179
A
MET
180
n
180
MET
180
A
VAL
181
n
181
VAL
181
A
SER
182
n
182
SER
182
A
LEU
183
n
183
LEU
183
A
LYS
184
n
184
LYS
184
A
THR
185
n
185
THR
185
A
GLY
186
n
186
GLY
186
A
ALA
187
n
187
ALA
187
A
LEU
188
n
188
LEU
188
A
ILE
189
n
189
ILE
189
A
ALA
190
n
190
ALA
190
A
ALA
191
n
191
ALA
191
A
ALA
192
n
192
ALA
192
A
ALA
193
n
193
ALA
193
A
LYS
194
n
194
LYS
194
A
TRP
195
n
195
TRP
195
A
GLY
196
n
196
GLY
196
A
VAL
197
n
197
VAL
197
A
LEU
198
n
198
LEU
198
A
SER
199
n
199
SER
199
A
VAL
200
n
200
VAL
200
A
SER
201
n
201
SER
201
A
ASP
202
n
202
ASP
202
A
ASP
203
n
203
ASP
203
A
ARG
204
n
204
ARG
204
A
GLY
205
n
205
GLY
205
A
LEU
206
n
206
LEU
206
A
ALA
207
n
207
ALA
207
A
GLU
208
n
208
GLU
208
A
ALA
209
n
209
ALA
209
A
ALA
210
n
210
ALA
210
A
TRP
211
n
211
TRP
211
A
ASN
212
n
212
ASN
212
A
PHE
213
n
213
PHE
213
A
GLY
214
n
214
GLY
214
A
MET
215
n
215
MET
215
A
ALA
216
n
216
ALA
216
A
ALA
217
n
217
ALA
217
A
GLY
218
n
218
GLY
218
A
VAL
219
n
219
VAL
219
A
ALA
220
n
220
ALA
220
A
PHE
221
n
221
PHE
221
A
GLN
222
n
222
GLN
222
A
ILE
223
n
223
ILE
223
A
ILE
224
n
224
ILE
224
A
ASP
225
n
225
ASP
225
A
ASP
226
n
226
ASP
226
A
VAL
227
n
227
VAL
227
A
LEU
228
n
228
LEU
228
A
ASP
229
n
229
ASP
229
A
ILE
230
n
230
ILE
230
A
TYR
231
n
231
TYR
231
A
GLY
232
n
232
GLY
232
A
n
233
233
A
n
234
234
A
n
235
235
A
n
236
236
A
n
237
237
A
n
238
238
A
n
239
239
A
GLU
240
n
240
GLU
240
A
ILE
241
n
241
ILE
241
A
GLY
242
n
242
GLY
242
A
LYS
243
n
243
LYS
243
A
ASP
244
n
244
ASP
244
A
ILE
245
n
245
ILE
245
A
LYS
246
n
246
LYS
246
A
GLU
247
n
247
GLU
247
A
HIS
248
n
248
HIS
248
A
LYS
249
n
249
LYS
249
A
ARG
250
n
250
ARG
250
A
GLY
251
n
251
GLY
251
A
ASN
252
n
252
ASN
252
A
ALA
253
n
253
ALA
253
A
VAL
254
n
254
VAL
254
A
VAL
255
n
255
VAL
255
A
ALA
256
n
256
ALA
256
A
VAL
257
n
257
VAL
257
A
ALA
258
n
258
ALA
258
A
LEU
259
n
259
LEU
259
A
SER
260
n
260
SER
260
A
HIS
261
n
261
HIS
261
A
LEU
262
n
262
LEU
262
A
GLY
263
n
263
GLY
263
A
GLU
264
n
264
GLU
264
A
GLY
265
n
265
GLY
265
A
GLU
266
n
266
GLU
266
A
ARG
267
n
267
ARG
267
A
ARG
268
n
268
ARG
268
A
ARG
269
n
269
ARG
269
A
LEU
270
n
270
LEU
270
A
LEU
271
n
271
LEU
271
A
GLU
272
n
272
GLU
272
A
ILE
273
n
273
ILE
273
A
LEU
274
n
274
LEU
274
A
ALA
275
n
275
ALA
275
A
ARG
276
n
276
ARG
276
A
GLU
277
n
277
GLU
277
A
VAL
278
n
278
VAL
278
A
VAL
279
n
279
VAL
279
A
GLU
280
n
280
GLU
280
A
GLU
281
n
281
GLU
281
A
ALA
282
n
282
ALA
282
A
ASP
283
n
283
ASP
283
A
VAL
284
n
284
VAL
284
A
ARG
285
n
285
ARG
285
A
GLU
286
n
286
GLU
286
A
ALA
287
n
287
ALA
287
A
VAL
288
n
288
VAL
288
A
ALA
289
n
289
ALA
289
A
LEU
290
n
290
LEU
290
A
LEU
291
n
291
LEU
291
A
ASP
292
n
292
ASP
292
A
SER
293
n
293
SER
293
A
VAL
294
n
294
VAL
294
A
GLY
295
n
295
GLY
295
A
ALA
296
n
296
ALA
296
A
ARG
297
n
297
ARG
297
A
GLU
298
n
298
GLU
298
A
GLU
299
n
299
GLU
299
A
ALA
300
n
300
ALA
300
A
LEU
301
n
301
LEU
301
A
ARG
302
n
302
ARG
302
A
LEU
303
n
303
LEU
303
A
ALA
304
n
304
ALA
304
A
ALA
305
n
305
ALA
305
A
ARG
306
n
306
ARG
306
A
TYR
307
n
307
TYR
307
A
ARG
308
n
308
ARG
308
A
GLU
309
n
309
GLU
309
A
GLU
310
n
310
GLU
310
A
ALA
311
n
311
ALA
311
A
GLU
312
n
312
GLU
312
A
ARG
313
n
313
ARG
313
A
HIS
314
n
314
HIS
314
A
LEU
315
n
315
LEU
315
A
ALA
316
n
316
ALA
316
A
LYS
317
n
317
LYS
317
A
ILE
318
n
318
ILE
318
A
PRO
319
n
319
PRO
319
A
ASN
320
n
320
ASN
320
A
ASN
321
n
321
ASN
321
A
GLY
322
n
322
GLY
322
A
THR
323
n
323
THR
323
A
LEU
324
n
324
LEU
324
A
LYS
325
n
325
LYS
325
A
GLU
326
n
326
GLU
326
A
LEU
327
n
327
LEU
327
A
LEU
328
n
328
LEU
328
A
ASP
329
n
329
ASP
329
A
PHE
330
n
330
PHE
330
A
ILE
331
n
331
ILE
331
A
VAL
332
n
332
VAL
332
A
ALA
333
n
333
ALA
333
A
ARG
334
n
334
ARG
334
A
GLU
335
n
335
GLU
335
A
TYR
336
n
336
TYR
336
A
ALA
337
n
337
ALA
337
A
GLU
338
n
338
GLU
338
A
ASN
339
n
339
ASN
339
A
LEU
340
n
340
LEU
340
A
n
341
341
A
n
342
342
A
n
343
343
A
n
344
344
A
n
345
345
A
n
346
346
A
n
347
347
A
n
348
348
A
n
349
349
A
n
350
350
A
n
351
351
A
n
352
352
A
n
353
353
A
n
354
354
A
n
355
355
A
n
356
356
A
n
357
357
A
n
358
358
A
author_and_software_defined_assembly
PISA
2
dimeric
6440
-26
25160
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_554
-x,y,-z-1/2
crystal symmetry operation
0.0000000000
0.0000000000
-74.4030000000
A
N
ARG
94
A
N
ARG
94
A
O
LEU
97
A
O
LEU
97
1
A
CG
GLU
240
A
CG
GLU
240
1
Y
1
A
CD
GLU
240
A
CD
GLU
240
1
Y
1
A
OE1
GLU
240
A
OE1
GLU
240
1
Y
1
A
OE2
GLU
240
A
OE2
GLU
240
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
VAL
2
A
VAL
2
1
Y
1
A
ASP
233
A
ASP
233
1
Y
1
A
PRO
234
A
PRO
234
1
Y
1
A
LYS
235
A
LYS
235
1
Y
1
A
LYS
236
A
LYS
236
1
Y
1
A
PHE
237
A
PHE
237
1
Y
1
A
GLY
238
A
GLY
238
1
Y
1
A
LYS
239
A
LYS
239
1
Y
1
A
TYR
341
A
TYR
341
1
Y
1
A
PHE
342
A
PHE
342
1
Y
1
A
GLN
343
A
GLN
343
1
Y
1
A
SER
344
A
SER
344
1
Y
1
A
HIS
345
A
HIS
345
1
Y
1
A
HIS
346
A
HIS
346
1
Y
1
A
HIS
347
A
HIS
347
1
Y
1
A
HIS
348
A
HIS
348
1
Y
1
A
HIS
349
A
HIS
349
1
Y
1
A
HIS
350
A
HIS
350
1
Y
1
A
TRP
351
A
TRP
351
1
Y
1
A
SER
352
A
SER
352
1
Y
1
A
HIS
353
A
HIS
353
1
Y
1
A
PRO
354
A
PRO
354
1
Y
1
A
GLN
355
A
GLN
355
1
Y
1
A
PHE
356
A
PHE
356
1
Y
1
A
GLU
357
A
GLU
357
1
Y
1
A
LYS
358
A
LYS
358
1
Y
1
A
ILE
230
-125.95
-50.25
1
A
ALA
333
33.79
58.50
34.895
3.57
0.00
-0.00
-2.56
-0.00
-1.02
0.960
0.945
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.21482
0.17213
0.17352
1.94
44.74
953
28751
3.2
98.12
3.334
0.095
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.141
0.135
0.80
0.80
1.40
PDB ENTRY 4DHD
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.94
44.74
292
2905
28
0
2585
0.009
0.019
2681
1.208
1.978
3632
4.574
5.000
339
28.972
23.175
126
14.406
15.000
464
15.998
15.000
28
0.076
0.200
411
0.006
0.020
2015
0.370
0.234
1.992
62
2086
20
96.80
23.482
1.94
50.000
4GP1
30255
-5.000
0.110
1
9.3000
4.800
98.3
0.37
1.94
1.97
3.30
1
4.80
99.5
phasing
PHASER
refinement
REFMAC
5.7.0029
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of ISOPRENOID SYNTHASE A3MSH1 (TARGET EFI-501992) from pyrobaculum calidifontis complexed with DMAPP
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
ASP
4
A
ASP
4
HELX_P
A
ILE
27
A
ILE
27
1
1
24
A
ALA
30
A
ALA
30
HELX_P
A
ASP
32
A
ASP
32
5
2
3
A
PHE
33
A
PHE
33
HELX_P
A
TYR
39
A
TYR
39
1
3
7
A
GLN
40
A
GLN
40
HELX_P
A
LYS
42
A
LYS
42
5
4
3
A
ARG
47
A
ARG
47
HELX_P
A
GLY
62
A
GLY
62
1
5
16
A
TRP
64
A
TRP
64
HELX_P
A
PRO
66
A
PRO
66
5
6
3
A
ALA
67
A
ALA
67
HELX_P
A
ASP
89
A
ASP
89
1
7
23
A
THR
99
A
THR
99
HELX_P
A
GLY
105
A
GLY
105
1
8
7
A
GLY
105
A
GLY
105
HELX_P
A
ASP
126
A
ASP
126
1
9
22
A
LYS
129
A
LYS
129
HELX_P
A
PHE
154
A
PHE
154
1
10
26
A
ASP
161
A
ASP
161
HELX_P
A
ALA
167
A
ALA
167
1
11
7
A
THR
173
A
THR
173
HELX_P
A
THR
185
A
THR
185
1
12
13
A
THR
185
A
THR
185
HELX_P
A
SER
201
A
SER
201
1
13
17
A
ASP
203
A
ASP
203
HELX_P
A
GLY
232
A
GLY
232
1
14
30
A
GLY
242
A
GLY
242
HELX_P
A
GLU
247
A
GLU
247
1
15
6
A
ASN
252
A
ASN
252
HELX_P
A
LEU
262
A
LEU
262
1
16
11
A
GLY
263
A
GLY
263
HELX_P
A
ALA
275
A
ALA
275
1
17
13
A
GLU
280
A
GLU
280
HELX_P
A
VAL
294
A
VAL
294
1
18
15
A
GLY
295
A
GLY
295
HELX_P
A
ALA
316
A
ALA
316
1
19
22
A
ASN
321
A
ASN
321
HELX_P
A
VAL
332
A
VAL
332
1
20
12
A
ALA
333
A
ALA
333
HELX_P
A
LEU
340
A
LEU
340
1
21
8
TRANSFERASE
ISOPRENOID SYNTHESIS, ISOPRENOID DIPHOSPHATE SYNTHASE, TRANSFERASE, Structural Genomics
A3MSH1_PYRCJ
UNP
1
1
A3MSH1
MDVVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSL
IYDDIIDRGDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDP
YFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIG
KDIKEHKRGNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNNG
TLKELLDFIVAREY
1
334
4GP1
3
336
A3MSH1
A
1
3
336
1
expression tag
MET
1
4GP1
A
A3MSH1
UNP
1
1
expression tag
VAL
2
4GP1
A
A3MSH1
UNP
2
1
expression tag
ALA
337
4GP1
A
A3MSH1
UNP
337
1
expression tag
GLU
338
4GP1
A
A3MSH1
UNP
338
1
expression tag
ASN
339
4GP1
A
A3MSH1
UNP
339
1
expression tag
LEU
340
4GP1
A
A3MSH1
UNP
340
1
expression tag
TYR
341
4GP1
A
A3MSH1
UNP
341
1
expression tag
PHE
342
4GP1
A
A3MSH1
UNP
342
1
expression tag
GLN
343
4GP1
A
A3MSH1
UNP
343
1
expression tag
SER
344
4GP1
A
A3MSH1
UNP
344
1
expression tag
HIS
345
4GP1
A
A3MSH1
UNP
345
1
expression tag
HIS
346
4GP1
A
A3MSH1
UNP
346
1
expression tag
HIS
347
4GP1
A
A3MSH1
UNP
347
1
expression tag
HIS
348
4GP1
A
A3MSH1
UNP
348
1
expression tag
HIS
349
4GP1
A
A3MSH1
UNP
349
1
expression tag
HIS
350
4GP1
A
A3MSH1
UNP
350
1
expression tag
TRP
351
4GP1
A
A3MSH1
UNP
351
1
expression tag
SER
352
4GP1
A
A3MSH1
UNP
352
1
expression tag
HIS
353
4GP1
A
A3MSH1
UNP
353
1
expression tag
PRO
354
4GP1
A
A3MSH1
UNP
354
1
expression tag
GLN
355
4GP1
A
A3MSH1
UNP
355
1
expression tag
PHE
356
4GP1
A
A3MSH1
UNP
356
1
expression tag
GLU
357
4GP1
A
A3MSH1
UNP
357
1
expression tag
LYS
358
4GP1
A
A3MSH1
UNP
358
2
anti-parallel
A
VAL
93
A
VAL
93
A
ARG
94
A
ARG
94
A
LEU
97
A
LEU
97
A
PRO
98
A
PRO
98
BINDING SITE FOR RESIDUE CL A 401
A
CL
401
Software
3
BINDING SITE FOR RESIDUE DMA A 402
A
DMA
402
Software
12
BINDING SITE FOR RESIDUE PG4 A 403
A
PG4
403
Software
6
A
GLN
63
A
GLN
63
3
1_555
A
TRP
64
A
TRP
64
3
1_555
A
ARG
65
A
ARG
65
3
1_555
A
GLY
45
A
GLY
45
12
1_555
A
LYS
46
A
LYS
46
12
1_555
A
LEU
48
A
LEU
48
12
1_555
A
ARG
49
A
ARG
49
12
1_555
A
HIS
78
A
HIS
78
12
1_555
A
ARG
95
A
ARG
95
12
1_555
A
PHE
221
A
PHE
221
12
1_555
A
HOH
517
E
HOH
12
1_555
A
HOH
518
E
HOH
12
1_555
A
HOH
566
E
HOH
12
1_555
A
HOH
573
E
HOH
12
1_555
A
HOH
768
E
HOH
12
1_555
A
GLU
139
A
GLU
139
6
1_555
A
LYS
194
A
LYS
194
6
1_555
A
ARG
204
A
ARG
204
6
1_555
A
GLU
208
A
GLU
208
6
1_555
A
TRP
211
A
TRP
211
6
1_555
A
HOH
792
E
HOH
6
1_555
20
C 2 2 21