0.022072 0.000000 0.000000 0.000000 0.014974 0.000000 0.000000 0.000000 0.008365 0.00000 0.00000 0.00000 Wang, L.K. Das, U. Smith, P. Shuman, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 45.306 66.781 119.546 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H16 N5 O13 P3 507.181 ADENOSINE-5'-TRIPHOSPHATE non-polymer C6 H8 O7 192.124 CITRIC ACID non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Rna RNARFU 2122 1355-8382 18 2277 2286 10.1261/rna.036061.112 23118415 Structure and mechanism of the polynucleotide kinase component of the bacterial Pnkp-Hen1 RNA repair system. 2012 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 130 1 PIXEL 2012-07-02 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.97 1.0 X25 NSLS 0.97 SYNCHROTRON NSLS BEAMLINE X25 19725.996 Metallophosphoesterase 2.7.1.78 V44M, I93M, L137M 2 man polymer 507.181 ADENOSINE-5'-TRIPHOSPHATE 2 syn non-polymer 24.305 MAGNESIUM ION 2 syn non-polymer 192.124 CITRIC ACID 1 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 188 nat water no yes S(MSE)KLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGL(MSE)SDDENDQTVTGAAFDVLHYIVSKRLQL GKLTVVDATNVQESARKPLIE(MSE)AKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQ(MSE)KKSIKG LQREGFRYVYILNSPEEVEEVVFERQP SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE EVEEVVFERQP A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 27405 / DSM 1237 sample Cthe_2768 203119 Clostridium thermocellum 562 Escherichia coli 1 2.29 46.33 VAPOR DIFFUSION, HANGING DROP 5.6 100mM sodium citrate, 5mM DTT, 100mM MgCl2, 16% PEG 3350, 2mM ATP, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 pdbx_database_related repository Initial release Database references Database references 1 0 2012-11-14 1 1 2012-12-05 1 2 2017-11-15 _pdbx_database_related.db_name LIG domain of Cth Pnkp LIG domain of Cth Pnkp LIG domain of Cth Pnkp N-terminal Hen1- C-terminal LIG domain of Cth Hen 1 Pnkp N-terminal Hen1- C-terminal LIG domain of Cth Hen 1 Pnkp RCSB Y RCSB 2012-08-20 REL REL ATP ADENOSINE-5'-TRIPHOSPHATE MG MAGNESIUM ION CIT CITRIC ACID NA SODIUM ION HOH water ATP 1001 2 ATP ATP 1001 A MG 1002 3 MG MG 1002 A CIT 1 4 CIT CIT 1003 A ATP 1001 2 ATP ATP 1001 B MG 1002 3 MG MG 1002 B NA 2 5 NA NA 1003 B HOH 2 6 HOH HOH 1101 A HOH 7 6 HOH HOH 1102 A HOH 8 6 HOH HOH 1103 A HOH 9 6 HOH HOH 1104 A HOH 10 6 HOH HOH 1105 A HOH 11 6 HOH HOH 1106 A HOH 14 6 HOH HOH 1107 A HOH 16 6 HOH HOH 1108 A HOH 18 6 HOH HOH 1109 A HOH 20 6 HOH HOH 1110 A HOH 21 6 HOH HOH 1111 A HOH 22 6 HOH HOH 1112 A HOH 23 6 HOH HOH 1113 A HOH 25 6 HOH HOH 1114 A HOH 28 6 HOH HOH 1115 A HOH 39 6 HOH HOH 1116 A HOH 40 6 HOH HOH 1117 A HOH 44 6 HOH HOH 1118 A HOH 45 6 HOH HOH 1119 A HOH 48 6 HOH HOH 1120 A HOH 51 6 HOH HOH 1121 A HOH 52 6 HOH HOH 1122 A HOH 56 6 HOH HOH 1123 A HOH 57 6 HOH HOH 1124 A HOH 58 6 HOH HOH 1125 A HOH 61 6 HOH HOH 1126 A HOH 63 6 HOH HOH 1127 A HOH 64 6 HOH HOH 1128 A HOH 65 6 HOH HOH 1129 A HOH 66 6 HOH HOH 1130 A HOH 67 6 HOH HOH 1131 A HOH 68 6 HOH HOH 1132 A HOH 69 6 HOH HOH 1133 A HOH 70 6 HOH HOH 1134 A HOH 72 6 HOH HOH 1135 A HOH 75 6 HOH HOH 1136 A HOH 78 6 HOH HOH 1137 A HOH 80 6 HOH HOH 1138 A HOH 81 6 HOH HOH 1139 A HOH 82 6 HOH HOH 1140 A HOH 85 6 HOH HOH 1141 A HOH 86 6 HOH HOH 1142 A HOH 88 6 HOH HOH 1143 A HOH 90 6 HOH HOH 1144 A HOH 91 6 HOH HOH 1145 A HOH 93 6 HOH HOH 1146 A HOH 94 6 HOH HOH 1147 A HOH 96 6 HOH HOH 1148 A HOH 97 6 HOH HOH 1149 A HOH 98 6 HOH HOH 1150 A HOH 101 6 HOH HOH 1151 A HOH 102 6 HOH HOH 1152 A HOH 103 6 HOH HOH 1153 A HOH 108 6 HOH HOH 1154 A HOH 111 6 HOH HOH 1155 A HOH 112 6 HOH HOH 1156 A HOH 113 6 HOH HOH 1157 A HOH 114 6 HOH HOH 1158 A HOH 117 6 HOH HOH 1159 A HOH 120 6 HOH HOH 1160 A HOH 126 6 HOH HOH 1161 A HOH 127 6 HOH HOH 1162 A HOH 128 6 HOH HOH 1163 A HOH 131 6 HOH HOH 1164 A HOH 133 6 HOH HOH 1165 A HOH 134 6 HOH HOH 1166 A HOH 136 6 HOH HOH 1167 A HOH 142 6 HOH HOH 1168 A HOH 143 6 HOH HOH 1169 A HOH 145 6 HOH HOH 1170 A HOH 146 6 HOH HOH 1171 A HOH 147 6 HOH HOH 1172 A HOH 152 6 HOH HOH 1173 A HOH 154 6 HOH HOH 1174 A HOH 157 6 HOH HOH 1175 A HOH 159 6 HOH HOH 1176 A HOH 161 6 HOH HOH 1177 A HOH 164 6 HOH HOH 1178 A HOH 166 6 HOH HOH 1179 A HOH 167 6 HOH HOH 1180 A HOH 168 6 HOH HOH 1181 A HOH 169 6 HOH HOH 1182 A HOH 171 6 HOH HOH 1183 A HOH 173 6 HOH HOH 1184 A HOH 178 6 HOH HOH 1185 A HOH 180 6 HOH HOH 1186 A HOH 182 6 HOH HOH 1187 A HOH 184 6 HOH HOH 1188 A HOH 185 6 HOH HOH 1189 A HOH 187 6 HOH HOH 1190 A HOH 1 6 HOH HOH 1101 B HOH 3 6 HOH HOH 1102 B HOH 4 6 HOH HOH 1103 B HOH 5 6 HOH HOH 1104 B HOH 6 6 HOH HOH 1105 B HOH 12 6 HOH HOH 1106 B HOH 13 6 HOH HOH 1107 B HOH 15 6 HOH HOH 1108 B HOH 17 6 HOH HOH 1109 B HOH 19 6 HOH HOH 1110 B HOH 24 6 HOH HOH 1111 B HOH 26 6 HOH HOH 1112 B HOH 27 6 HOH HOH 1113 B HOH 29 6 HOH HOH 1114 B HOH 30 6 HOH HOH 1115 B HOH 31 6 HOH HOH 1116 B HOH 32 6 HOH HOH 1117 B HOH 33 6 HOH HOH 1118 B HOH 34 6 HOH HOH 1119 B HOH 35 6 HOH HOH 1120 B HOH 36 6 HOH HOH 1121 B HOH 37 6 HOH HOH 1122 B HOH 38 6 HOH HOH 1123 B HOH 41 6 HOH HOH 1124 B HOH 42 6 HOH HOH 1125 B HOH 43 6 HOH HOH 1126 B HOH 46 6 HOH HOH 1127 B HOH 47 6 HOH HOH 1128 B HOH 49 6 HOH HOH 1129 B HOH 50 6 HOH HOH 1130 B HOH 53 6 HOH HOH 1131 B HOH 54 6 HOH HOH 1132 B HOH 55 6 HOH HOH 1133 B HOH 59 6 HOH HOH 1134 B HOH 60 6 HOH HOH 1135 B HOH 62 6 HOH HOH 1136 B HOH 71 6 HOH HOH 1137 B HOH 73 6 HOH HOH 1138 B HOH 74 6 HOH HOH 1139 B HOH 76 6 HOH HOH 1140 B HOH 77 6 HOH HOH 1141 B HOH 79 6 HOH HOH 1142 B HOH 83 6 HOH HOH 1143 B HOH 84 6 HOH HOH 1144 B HOH 87 6 HOH HOH 1145 B HOH 89 6 HOH HOH 1146 B HOH 92 6 HOH HOH 1147 B HOH 95 6 HOH HOH 1148 B HOH 99 6 HOH HOH 1149 B HOH 100 6 HOH HOH 1150 B HOH 104 6 HOH HOH 1151 B HOH 105 6 HOH HOH 1152 B HOH 106 6 HOH HOH 1153 B HOH 107 6 HOH HOH 1154 B HOH 109 6 HOH HOH 1155 B HOH 110 6 HOH HOH 1156 B HOH 115 6 HOH HOH 1157 B HOH 116 6 HOH HOH 1158 B HOH 118 6 HOH HOH 1159 B HOH 119 6 HOH HOH 1160 B HOH 121 6 HOH HOH 1161 B HOH 122 6 HOH HOH 1162 B HOH 123 6 HOH HOH 1163 B HOH 124 6 HOH HOH 1164 B HOH 125 6 HOH HOH 1165 B HOH 129 6 HOH HOH 1166 B HOH 130 6 HOH HOH 1167 B HOH 132 6 HOH HOH 1168 B HOH 135 6 HOH HOH 1169 B HOH 137 6 HOH HOH 1170 B HOH 138 6 HOH HOH 1171 B HOH 139 6 HOH HOH 1172 B HOH 140 6 HOH HOH 1173 B HOH 141 6 HOH HOH 1174 B HOH 144 6 HOH HOH 1175 B HOH 148 6 HOH HOH 1176 B HOH 149 6 HOH HOH 1177 B HOH 150 6 HOH HOH 1178 B HOH 151 6 HOH HOH 1179 B HOH 153 6 HOH HOH 1180 B HOH 155 6 HOH HOH 1181 B HOH 158 6 HOH HOH 1182 B HOH 160 6 HOH HOH 1183 B HOH 162 6 HOH HOH 1184 B HOH 163 6 HOH HOH 1185 B HOH 165 6 HOH HOH 1186 B HOH 170 6 HOH HOH 1187 B HOH 172 6 HOH HOH 1188 B HOH 174 6 HOH HOH 1189 B HOH 175 6 HOH HOH 1190 B HOH 176 6 HOH HOH 1191 B HOH 177 6 HOH HOH 1192 B HOH 179 6 HOH HOH 1193 B HOH 181 6 HOH HOH 1194 B HOH 183 6 HOH HOH 1195 B HOH 186 6 HOH HOH 1196 B HOH 188 6 HOH HOH 1197 B HOH 189 6 HOH HOH 1198 B SER 0 n 1 SER 0 A MSE 1 n 2 MSE 1 A LYS 2 n 3 LYS 2 A LEU 3 n 4 LEU 3 A THR 4 n 5 THR 4 A ILE 5 n 6 ILE 5 A PRO 6 n 7 PRO 6 A GLU 7 n 8 GLU 7 A LEU 8 n 9 LEU 8 A SER 9 n 10 SER 9 A LEU 10 n 11 LEU 10 A VAL 11 n 12 VAL 11 A VAL 12 n 13 VAL 12 A LEU 13 n 14 LEU 13 A ILE 14 n 15 ILE 14 A GLY 15 n 16 GLY 15 A SER 16 n 17 SER 16 A SER 17 n 18 SER 17 A GLY 18 n 19 GLY 18 A SER 19 n 20 SER 19 A GLY 20 n 21 GLY 20 A LYS 21 n 22 LYS 21 A SER 22 n 23 SER 22 A THR 23 n 24 THR 23 A PHE 24 n 25 PHE 24 A ALA 25 n 26 ALA 25 A LYS 26 n 27 LYS 26 A LYS 27 n 28 LYS 27 A HIS 28 n 29 HIS 28 A PHE 29 n 30 PHE 29 A LYS 30 n 31 LYS 30 A PRO 31 n 32 PRO 31 A THR 32 n 33 THR 32 A GLU 33 n 34 GLU 33 A VAL 34 n 35 VAL 34 A ILE 35 n 36 ILE 35 A SER 36 n 37 SER 36 A SER 37 n 38 SER 37 A ASP 38 n 39 ASP 38 A PHE 39 n 40 PHE 39 A CYS 40 n 41 CYS 40 A ARG 41 n 42 ARG 41 A GLY 42 n 43 GLY 42 A LEU 43 n 44 LEU 43 A MSE 44 n 45 MSE 44 A SER 45 n 46 SER 45 A ASP 46 n 47 ASP 46 A ASP 47 n 48 ASP 47 A GLU 48 n 49 GLU 48 A ASN 49 n 50 ASN 49 A ASP 50 n 51 ASP 50 A GLN 51 n 52 GLN 51 A THR 52 n 53 THR 52 A VAL 53 n 54 VAL 53 A THR 54 n 55 THR 54 A GLY 55 n 56 GLY 55 A ALA 56 n 57 ALA 56 A ALA 57 n 58 ALA 57 A PHE 58 n 59 PHE 58 A ASP 59 n 60 ASP 59 A VAL 60 n 61 VAL 60 A LEU 61 n 62 LEU 61 A HIS 62 n 63 HIS 62 A TYR 63 n 64 TYR 63 A ILE 64 n 65 ILE 64 A VAL 65 n 66 VAL 65 A SER 66 n 67 SER 66 A LYS 67 n 68 LYS 67 A ARG 68 n 69 ARG 68 A LEU 69 n 70 LEU 69 A GLN 70 n 71 GLN 70 A LEU 71 n 72 LEU 71 A GLY 72 n 73 GLY 72 A LYS 73 n 74 LYS 73 A LEU 74 n 75 LEU 74 A THR 75 n 76 THR 75 A VAL 76 n 77 VAL 76 A VAL 77 n 78 VAL 77 A ASP 78 n 79 ASP 78 A ALA 79 n 80 ALA 79 A THR 80 n 81 THR 80 A ASN 81 n 82 ASN 81 A VAL 82 n 83 VAL 82 A GLN 83 n 84 GLN 83 A GLU 84 n 85 GLU 84 A SER 85 n 86 SER 85 A ALA 86 n 87 ALA 86 A ARG 87 n 88 ARG 87 A LYS 88 n 89 LYS 88 A PRO 89 n 90 PRO 89 A LEU 90 n 91 LEU 90 A ILE 91 n 92 ILE 91 A GLU 92 n 93 GLU 92 A MSE 93 n 94 MSE 93 A ALA 94 n 95 ALA 94 A LYS 95 n 96 LYS 95 A ASP 96 n 97 ASP 96 A TYR 97 n 98 TYR 97 A HIS 98 n 99 HIS 98 A CYS 99 n 100 CYS 99 A PHE 100 n 101 PHE 100 A PRO 101 n 102 PRO 101 A VAL 102 n 103 VAL 102 A ALA 103 n 104 ALA 103 A VAL 104 n 105 VAL 104 A VAL 105 n 106 VAL 105 A PHE 106 n 107 PHE 106 A ASN 107 n 108 ASN 107 A LEU 108 n 109 LEU 108 A PRO 109 n 110 PRO 109 A GLU 110 n 111 GLU 110 A LYS 111 n 112 LYS 111 A VAL 112 n 113 VAL 112 A CYS 113 n 114 CYS 113 A GLN 114 n 115 GLN 114 A GLU 115 n 116 GLU 115 A ARG 116 n 117 ARG 116 A ASN 117 n 118 ASN 117 A LYS 118 n 119 LYS 118 A ASN 119 n 120 ASN 119 A ARG 120 n 121 ARG 120 A THR 121 n 122 THR 121 A ASP 122 n 123 ASP 122 A ARG 123 n 124 ARG 123 A GLN 124 n 125 GLN 124 A VAL 125 n 126 VAL 125 A GLU 126 n 127 GLU 126 A GLU 127 n 128 GLU 127 A TYR 128 n 129 TYR 128 A VAL 129 n 130 VAL 129 A ILE 130 n 131 ILE 130 A ARG 131 n 132 ARG 131 A LYS 132 n 133 LYS 132 A HIS 133 n 134 HIS 133 A THR 134 n 135 THR 134 A GLN 135 n 136 GLN 135 A GLN 136 n 137 GLN 136 A MSE 137 n 138 MSE 137 A LYS 138 n 139 LYS 138 A LYS 139 n 140 LYS 139 A SER 140 n 141 SER 140 A ILE 141 n 142 ILE 141 A LYS 142 n 143 LYS 142 A GLY 143 n 144 GLY 143 A LEU 144 n 145 LEU 144 A GLN 145 n 146 GLN 145 A ARG 146 n 147 ARG 146 A GLU 147 n 148 GLU 147 A GLY 148 n 149 GLY 148 A PHE 149 n 150 PHE 149 A ARG 150 n 151 ARG 150 A TYR 151 n 152 TYR 151 A VAL 152 n 153 VAL 152 A TYR 153 n 154 TYR 153 A ILE 154 n 155 ILE 154 A LEU 155 n 156 LEU 155 A ASN 156 n 157 ASN 156 A SER 157 n 158 SER 157 A PRO 158 n 159 PRO 158 A GLU 159 n 160 GLU 159 A GLU 160 n 161 GLU 160 A VAL 161 n 162 VAL 161 A GLU 162 n 163 GLU 162 A GLU 163 n 164 GLU 163 A VAL 164 n 165 VAL 164 A VAL 165 n 166 VAL 165 A PHE 166 n 167 PHE 166 A GLU 167 n 168 GLU 167 A ARG 168 n 169 ARG 168 A GLN 169 n 170 GLN 169 A PRO 170 n 171 PRO 170 A SER 0 n 1 SER 0 B MSE 1 n 2 MSE 1 B LYS 2 n 3 LYS 2 B LEU 3 n 4 LEU 3 B THR 4 n 5 THR 4 B ILE 5 n 6 ILE 5 B PRO 6 n 7 PRO 6 B GLU 7 n 8 GLU 7 B LEU 8 n 9 LEU 8 B SER 9 n 10 SER 9 B LEU 10 n 11 LEU 10 B VAL 11 n 12 VAL 11 B VAL 12 n 13 VAL 12 B LEU 13 n 14 LEU 13 B ILE 14 n 15 ILE 14 B GLY 15 n 16 GLY 15 B SER 16 n 17 SER 16 B SER 17 n 18 SER 17 B GLY 18 n 19 GLY 18 B SER 19 n 20 SER 19 B GLY 20 n 21 GLY 20 B LYS 21 n 22 LYS 21 B SER 22 n 23 SER 22 B THR 23 n 24 THR 23 B PHE 24 n 25 PHE 24 B ALA 25 n 26 ALA 25 B LYS 26 n 27 LYS 26 B LYS 27 n 28 LYS 27 B HIS 28 n 29 HIS 28 B PHE 29 n 30 PHE 29 B LYS 30 n 31 LYS 30 B PRO 31 n 32 PRO 31 B THR 32 n 33 THR 32 B GLU 33 n 34 GLU 33 B VAL 34 n 35 VAL 34 B ILE 35 n 36 ILE 35 B SER 36 n 37 SER 36 B SER 37 n 38 SER 37 B ASP 38 n 39 ASP 38 B PHE 39 n 40 PHE 39 B CYS 40 n 41 CYS 40 B ARG 41 n 42 ARG 41 B GLY 42 n 43 GLY 42 B LEU 43 n 44 LEU 43 B MSE 44 n 45 MSE 44 B SER 45 n 46 SER 45 B ASP 46 n 47 ASP 46 B ASP 47 n 48 ASP 47 B GLU 48 n 49 GLU 48 B ASN 49 n 50 ASN 49 B ASP 50 n 51 ASP 50 B GLN 51 n 52 GLN 51 B THR 52 n 53 THR 52 B VAL 53 n 54 VAL 53 B THR 54 n 55 THR 54 B GLY 55 n 56 GLY 55 B ALA 56 n 57 ALA 56 B ALA 57 n 58 ALA 57 B PHE 58 n 59 PHE 58 B ASP 59 n 60 ASP 59 B VAL 60 n 61 VAL 60 B LEU 61 n 62 LEU 61 B HIS 62 n 63 HIS 62 B TYR 63 n 64 TYR 63 B ILE 64 n 65 ILE 64 B VAL 65 n 66 VAL 65 B SER 66 n 67 SER 66 B LYS 67 n 68 LYS 67 B ARG 68 n 69 ARG 68 B LEU 69 n 70 LEU 69 B GLN 70 n 71 GLN 70 B LEU 71 n 72 LEU 71 B GLY 72 n 73 GLY 72 B LYS 73 n 74 LYS 73 B LEU 74 n 75 LEU 74 B THR 75 n 76 THR 75 B VAL 76 n 77 VAL 76 B VAL 77 n 78 VAL 77 B ASP 78 n 79 ASP 78 B ALA 79 n 80 ALA 79 B THR 80 n 81 THR 80 B ASN 81 n 82 ASN 81 B VAL 82 n 83 VAL 82 B GLN 83 n 84 GLN 83 B GLU 84 n 85 GLU 84 B SER 85 n 86 SER 85 B ALA 86 n 87 ALA 86 B ARG 87 n 88 ARG 87 B LYS 88 n 89 LYS 88 B PRO 89 n 90 PRO 89 B LEU 90 n 91 LEU 90 B ILE 91 n 92 ILE 91 B GLU 92 n 93 GLU 92 B MSE 93 n 94 MSE 93 B ALA 94 n 95 ALA 94 B LYS 95 n 96 LYS 95 B ASP 96 n 97 ASP 96 B TYR 97 n 98 TYR 97 B HIS 98 n 99 HIS 98 B CYS 99 n 100 CYS 99 B PHE 100 n 101 PHE 100 B PRO 101 n 102 PRO 101 B VAL 102 n 103 VAL 102 B ALA 103 n 104 ALA 103 B VAL 104 n 105 VAL 104 B VAL 105 n 106 VAL 105 B PHE 106 n 107 PHE 106 B ASN 107 n 108 ASN 107 B LEU 108 n 109 LEU 108 B PRO 109 n 110 PRO 109 B GLU 110 n 111 GLU 110 B LYS 111 n 112 LYS 111 B VAL 112 n 113 VAL 112 B CYS 113 n 114 CYS 113 B GLN 114 n 115 GLN 114 B GLU 115 n 116 GLU 115 B ARG 116 n 117 ARG 116 B ASN 117 n 118 ASN 117 B LYS 118 n 119 LYS 118 B ASN 119 n 120 ASN 119 B ARG 120 n 121 ARG 120 B THR 121 n 122 THR 121 B ASP 122 n 123 ASP 122 B ARG 123 n 124 ARG 123 B GLN 124 n 125 GLN 124 B VAL 125 n 126 VAL 125 B GLU 126 n 127 GLU 126 B GLU 127 n 128 GLU 127 B TYR 128 n 129 TYR 128 B VAL 129 n 130 VAL 129 B ILE 130 n 131 ILE 130 B ARG 131 n 132 ARG 131 B LYS 132 n 133 LYS 132 B HIS 133 n 134 HIS 133 B THR 134 n 135 THR 134 B GLN 135 n 136 GLN 135 B GLN 136 n 137 GLN 136 B MSE 137 n 138 MSE 137 B LYS 138 n 139 LYS 138 B LYS 139 n 140 LYS 139 B SER 140 n 141 SER 140 B ILE 141 n 142 ILE 141 B LYS 142 n 143 LYS 142 B GLY 143 n 144 GLY 143 B LEU 144 n 145 LEU 144 B GLN 145 n 146 GLN 145 B ARG 146 n 147 ARG 146 B GLU 147 n 148 GLU 147 B GLY 148 n 149 GLY 148 B PHE 149 n 150 PHE 149 B ARG 150 n 151 ARG 150 B TYR 151 n 152 TYR 151 B VAL 152 n 153 VAL 152 B TYR 153 n 154 TYR 153 B ILE 154 n 155 ILE 154 B LEU 155 n 156 LEU 155 B ASN 156 n 157 ASN 156 B SER 157 n 158 SER 157 B PRO 158 n 159 PRO 158 B GLU 159 n 160 GLU 159 B GLU 160 n 161 GLU 160 B VAL 161 n 162 VAL 161 B GLU 162 n 163 GLU 162 B GLU 163 n 164 GLU 163 B VAL 164 n 165 VAL 164 B VAL 165 n 166 VAL 165 B PHE 166 n 167 PHE 166 B GLU 167 n 168 GLU 167 B ARG 168 n 169 ARG 168 B GLN 169 n 170 GLN 169 B PRO 170 n 171 PRO 170 B author_and_software_defined_assembly PISA 2 dimeric 3760 -37 16660 B ATP 1001 F O3G ATP 1_555 B MG 1002 G MG MG 1_555 B ATP 1001 F O1B ATP 1_555 93.4 B ATP 1001 F O3G ATP 1_555 B MG 1002 G MG MG 1_555 B SER 22 B OG SER 23 1_555 170.2 B ATP 1001 F O1B ATP 1_555 B MG 1002 G MG MG 1_555 B SER 22 B OG SER 23 1_555 83.5 B ATP 1001 F O3G ATP 1_555 B MG 1002 G MG MG 1_555 B HOH 1119 J O HOH 1_555 95.5 B ATP 1001 F O1B ATP 1_555 B MG 1002 G MG MG 1_555 B HOH 1119 J O HOH 1_555 90.2 B SER 22 B OG SER 23 1_555 B MG 1002 G MG MG 1_555 B HOH 1119 J O HOH 1_555 93.8 B ATP 1001 F O3G ATP 1_555 B MG 1002 G MG MG 1_555 B HOH 1120 J O HOH 1_555 89.1 B ATP 1001 F O1B ATP 1_555 B MG 1002 G MG MG 1_555 B HOH 1120 J O HOH 1_555 90.5 B SER 22 B OG SER 23 1_555 B MG 1002 G MG MG 1_555 B HOH 1120 J O HOH 1_555 81.7 B HOH 1119 J O HOH 1_555 B MG 1002 G MG MG 1_555 B HOH 1120 J O HOH 1_555 175.3 B ATP 1001 F O3G ATP 1_555 B MG 1002 G MG MG 1_555 B HOH 1118 J O HOH 1_555 94.5 B ATP 1001 F O1B ATP 1_555 B MG 1002 G MG MG 1_555 B HOH 1118 J O HOH 1_555 171.4 B SER 22 B OG SER 23 1_555 B MG 1002 G MG MG 1_555 B HOH 1118 J O HOH 1_555 88.2 B HOH 1119 J O HOH 1_555 B MG 1002 G MG MG 1_555 B HOH 1118 J O HOH 1_555 92.3 B HOH 1120 J O HOH 1_555 B MG 1002 G MG MG 1_555 B HOH 1118 J O HOH 1_555 86.3 A ATP 1001 C O3G ATP 1_555 A MG 1002 D MG MG 1_555 A ATP 1001 C O1B ATP 1_555 90.1 A ATP 1001 C O3G ATP 1_555 A MG 1002 D MG MG 1_555 A SER 22 A OG SER 23 1_555 174.0 A ATP 1001 C O1B ATP 1_555 A MG 1002 D MG MG 1_555 A SER 22 A OG SER 23 1_555 93.0 A ATP 1001 C O3G ATP 1_555 A MG 1002 D MG MG 1_555 A HOH 1129 I O HOH 1_555 92.0 A ATP 1001 C O1B ATP 1_555 A MG 1002 D MG MG 1_555 A HOH 1129 I O HOH 1_555 88.3 A SER 22 A OG SER 23 1_555 A MG 1002 D MG MG 1_555 A HOH 1129 I O HOH 1_555 93.3 A ATP 1001 C O3G ATP 1_555 A MG 1002 D MG MG 1_555 A HOH 1131 I O HOH 1_555 85.2 A ATP 1001 C O1B ATP 1_555 A MG 1002 D MG MG 1_555 A HOH 1131 I O HOH 1_555 94.7 A SER 22 A OG SER 23 1_555 A MG 1002 D MG MG 1_555 A HOH 1131 I O HOH 1_555 89.4 A HOH 1129 I O HOH 1_555 A MG 1002 D MG MG 1_555 A HOH 1131 I O HOH 1_555 175.8 A ATP 1001 C O3G ATP 1_555 A MG 1002 D MG MG 1_555 A HOH 1130 I O HOH 1_555 88.6 A ATP 1001 C O1B ATP 1_555 A MG 1002 D MG MG 1_555 A HOH 1130 I O HOH 1_555 176.8 A SER 22 A OG SER 23 1_555 A MG 1002 D MG MG 1_555 A HOH 1130 I O HOH 1_555 88.0 A HOH 1129 I O HOH 1_555 A MG 1002 D MG MG 1_555 A HOH 1130 I O HOH 1_555 94.7 A HOH 1131 I O HOH 1_555 A MG 1002 D MG MG 1_555 A HOH 1130 I O HOH 1_555 82.2 A MSE 1 SELENOMETHIONINE A MSE 2 MET A MSE 44 SELENOMETHIONINE A MSE 45 MET A MSE 93 SELENOMETHIONINE A MSE 94 MET A MSE 137 SELENOMETHIONINE A MSE 138 MET B MSE 1 SELENOMETHIONINE B MSE 2 MET B MSE 44 SELENOMETHIONINE B MSE 45 MET B MSE 93 SELENOMETHIONINE B MSE 94 MET B MSE 137 SELENOMETHIONINE B MSE 138 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_665 -x+3/2,-y+1,z+1/2 crystal symmetry operation 67.9590000000 66.7810000000 59.7730000000 A N LEU 3 A N LEU 4 A O VAL 165 A O VAL 166 A N ILE 35 A N ILE 36 A O VAL 76 A O VAL 77 A O VAL 77 A O VAL 78 A N VAL 11 A N VAL 12 A N VAL 12 A N VAL 13 A O VAL 102 A O VAL 103 A N VAL 105 A N VAL 106 A O LEU 155 A O LEU 156 B N LEU 3 B N LEU 4 B O GLU 167 B O GLU 168 B N ILE 35 B N ILE 36 B O VAL 76 B O VAL 77 B O VAL 77 B O VAL 78 B N VAL 11 B N VAL 12 B N VAL 12 B N VAL 13 B O VAL 102 B O VAL 103 B N VAL 105 B N VAL 106 B O LEU 155 B O LEU 156 1 A A O O HOH HOH 1170 1181 2.05 1 A B O O HOH HOH 1150 1175 2.18 1 A A OD2 NH2 ASP ARG 38 123 2.18 B 1 A A O4 O CIT HOH 1003 1176 2.18 1 A B O O HOH HOH 1177 1154 2.17 1_555 2_665 0.1328 0.0000 -0.0000 0.8749 -0.0000 -1.0077 0.2299 0.1753 0.1797 2.000 44.538 1977 24992 7.91 98.83 0.24 random 1 0.21 SAD 21.64 0.98 1.20 ML FLAT BULK SOLVENT MODEL 19.401 0.323 2.000 44.538 188 3004 78 0 2738 0.008 2899 1.222 3937 16.638 1124 0.071 437 0.005 494 0.3519 0.2346 2.0496 136 1540 93.00 0.2958 0.2103 2.1050 136 1578 97.00 0.2537 0.1906 2.1670 140 1608 98.00 0.2288 0.1753 2.2369 136 1610 99.00 0.2770 0.1718 2.3169 136 1611 99.00 0.2549 0.1866 2.4096 141 1628 99.00 0.2764 0.1937 2.5193 141 1658 100.00 0.2548 0.1855 2.6521 140 1623 100.00 0.2229 0.1768 2.8182 142 1648 100.00 0.2414 0.1847 3.0358 143 1665 100.00 0.2366 0.1779 3.3412 143 1663 100.00 0.1979 0.1676 3.8245 144 1677 100.00 0.1758 0.1341 4.8175 146 1706 100.00 0.1807 0.1661 44.5492 153 1800 100.00 2.0 50.0 4GP7 25287 -3.0 1 99.8 2.00 2.03 1 99.2 data collection CBASS model building PHENIX refinement PHENIX (phenix.refine: 1.7.3_928) data reduction HKL-2000 data scaling SCALEPACK phasing PHENIX Metallophosphoesterase (E.C.2.7.1.78) Polynucleotide kinase 1 N N 1 N N 2 N N 3 N N 4 N N 2 N N 3 N N 5 N N 6 N N 6 N N A GLY 20 A GLY 21 HELX_P A PHE 29 A PHE 30 1 1 10 A LYS 30 A LYS 31 HELX_P A THR 32 A THR 33 5 2 3 A SER 37 A SER 38 HELX_P A SER 45 A SER 46 1 3 9 A ASP 50 A ASP 51 HELX_P A THR 52 A THR 53 5 4 3 A VAL 53 A VAL 54 HELX_P A LEU 71 A LEU 72 1 5 19 A GLN 83 A GLN 84 HELX_P A TYR 97 A TYR 98 1 6 15 A PRO 109 A PRO 110 HELX_P A ASN 119 A ASN 120 1 7 11 A GLU 126 A GLU 127 HELX_P A ILE 141 A ILE 142 1 8 16 A GLY 143 A GLY 144 HELX_P A GLY 148 A GLY 149 1 9 6 A SER 157 A SER 158 HELX_P A GLU 163 A GLU 164 1 10 7 B GLY 20 B GLY 21 HELX_P B PHE 29 B PHE 30 1 11 10 B LYS 30 B LYS 31 HELX_P B THR 32 B THR 33 5 12 3 B SER 37 B SER 38 HELX_P B SER 45 B SER 46 1 13 9 B VAL 53 B VAL 54 HELX_P B LEU 71 B LEU 72 1 14 19 B GLN 83 B GLN 84 HELX_P B TYR 97 B TYR 98 1 15 15 B PRO 109 B PRO 110 HELX_P B ARG 120 B ARG 121 1 16 12 B GLU 126 B GLU 127 HELX_P B ILE 141 B ILE 142 1 17 16 B GLY 143 B GLY 144 HELX_P B GLY 148 B GLY 149 1 18 6 B SER 157 B SER 158 HELX_P B GLU 163 B GLU 164 1 19 7 covale 1.331 A SER 0 A C SER 1 1_555 A MSE 1 A N MSE 2 1_555 covale 1.323 A MSE 1 A C MSE 2 1_555 A LYS 2 A N LYS 3 1_555 covale 1.328 A LEU 43 A C LEU 44 1_555 A MSE 44 A N MSE 45 1_555 covale 1.331 A MSE 44 A C MSE 45 1_555 A SER 45 A N SER 46 1_555 covale 1.324 A GLU 92 A C GLU 93 1_555 A MSE 93 A N MSE 94 1_555 covale 1.333 A MSE 93 A C MSE 94 1_555 A ALA 94 A N ALA 95 1_555 covale 1.332 A GLN 136 A C GLN 137 1_555 A MSE 137 A N MSE 138 1_555 covale 1.331 A MSE 137 A C MSE 138 1_555 A LYS 138 A N LYS 139 1_555 covale 1.325 B SER 0 B C SER 1 1_555 B MSE 1 B N MSE 2 1_555 covale 1.330 B MSE 1 B C MSE 2 1_555 B LYS 2 B N LYS 3 1_555 covale 1.330 B LEU 43 B C LEU 44 1_555 B MSE 44 B N MSE 45 1_555 covale 1.327 B MSE 44 B C MSE 45 1_555 B SER 45 B N SER 46 1_555 covale 1.331 B GLU 92 B C GLU 93 1_555 B MSE 93 B N MSE 94 1_555 covale 1.333 B MSE 93 B C MSE 94 1_555 B ALA 94 B N ALA 95 1_555 covale 1.332 B GLN 136 B C GLN 137 1_555 B MSE 137 B N MSE 138 1_555 covale 1.329 B MSE 137 B C MSE 138 1_555 B LYS 138 B N LYS 139 1_555 metalc 1.924 B ATP 1001 F O3G ATP 1_555 B MG 1002 G MG MG 1_555 metalc 1.992 A ATP 1001 C O3G ATP 1_555 A MG 1002 D MG MG 1_555 metalc 2.037 A ATP 1001 C O1B ATP 1_555 A MG 1002 D MG MG 1_555 metalc 2.064 A SER 22 A OG SER 23 1_555 A MG 1002 D MG MG 1_555 metalc 2.074 B ATP 1001 F O1B ATP 1_555 B MG 1002 G MG MG 1_555 metalc 2.094 B SER 22 B OG SER 23 1_555 B MG 1002 G MG MG 1_555 metalc 2.055 A MG 1002 D MG MG 1_555 A HOH 1129 I O HOH 1_555 metalc 2.061 B MG 1002 G MG MG 1_555 B HOH 1119 J O HOH 1_555 metalc 2.074 B MG 1002 G MG MG 1_555 B HOH 1120 J O HOH 1_555 metalc 2.096 A MG 1002 D MG MG 1_555 A HOH 1131 I O HOH 1_555 metalc 2.106 A MG 1002 D MG MG 1_555 A HOH 1130 I O HOH 1_555 metalc 2.115 B MG 1002 G MG MG 1_555 B HOH 1118 J O HOH 1_555 TRANSFERASE polynucleotide kinase phosphatase, RNA repair, TRANSFERASE A3DJ38_CLOTH UNP 1 1 A3DJ38 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLVSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDAT NVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQLKKSIKGLQREGFRYVYILNSPEE VEEVVFERQP 1 170 4GP7 1 170 A3DJ38 A 1 2 171 1 170 4GP7 1 170 A3DJ38 B 1 2 171 1 EXPRESSION TAG SER 0 4GP7 A A3DJ38 UNP 1 1 VAL ENGINEERED MUTATION MSE 44 4GP7 A A3DJ38 UNP 44 45 1 ILE ENGINEERED MUTATION MSE 93 4GP7 A A3DJ38 UNP 93 94 1 LEU ENGINEERED MUTATION MSE 137 4GP7 A A3DJ38 UNP 137 138 2 EXPRESSION TAG SER 0 4GP7 B A3DJ38 UNP 1 2 VAL ENGINEERED MUTATION MSE 44 4GP7 B A3DJ38 UNP 44 45 2 ILE ENGINEERED MUTATION MSE 93 4GP7 B A3DJ38 UNP 93 94 2 LEU ENGINEERED MUTATION MSE 137 4GP7 B A3DJ38 UNP 137 138 2 5 2 5 parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel A MSE 1 A MSE 2 A PRO 6 A PRO 7 A VAL 164 A VAL 165 A GLN 169 A GLN 170 A VAL 34 A VAL 35 A SER 36 A SER 37 A THR 75 A THR 76 A ASP 78 A ASP 79 A SER 9 A SER 10 A ILE 14 A ILE 15 A PHE 100 A PHE 101 A PHE 106 A PHE 107 A TYR 151 A TYR 152 A LEU 155 A LEU 156 B MSE 1 B MSE 2 B THR 4 B THR 5 B VAL 164 B VAL 165 B GLU 167 B GLU 168 B VAL 34 B VAL 35 B SER 36 B SER 37 B THR 75 B THR 76 B ASP 78 B ASP 79 B SER 9 B SER 10 B ILE 14 B ILE 15 B PHE 100 B PHE 101 B PHE 106 B PHE 107 B TYR 151 B TYR 152 B LEU 155 B LEU 156 BINDING SITE FOR RESIDUE ATP A 1001 Software 21 BINDING SITE FOR RESIDUE MG A 1002 Software 5 BINDING SITE FOR RESIDUE CIT A 1003 Software 8 BINDING SITE FOR RESIDUE ATP B 1001 Software 19 BINDING SITE FOR RESIDUE MG B 1002 Software 5 BINDING SITE FOR RESIDUE NA B 1003 Software 3 A SER 16 A SER 17 21 1_555 A SER 17 A SER 18 21 1_555 A GLY 18 A GLY 19 21 1_555 A SER 19 A SER 20 21 1_555 A GLY 20 A GLY 21 21 1_555 A LYS 21 A LYS 22 21 1_555 A SER 22 A SER 23 21 1_555 A THR 23 A THR 24 21 1_555 A ASP 38 A ASP 39 21 1_555 A ARG 116 A ARG 117 21 1_555 A ARG 120 A ARG 121 21 1_555 A ARG 123 A ARG 124 21 1_555 A MG 1002 D MG 21 1_555 A HOH 1129 I HOH 21 1_555 A HOH 1130 I HOH 21 1_555 A HOH 1131 I HOH 21 1_555 A HOH 1132 I HOH 21 1_555 A HOH 1151 I HOH 21 1_555 A HOH 1179 I HOH 21 1_555 A HOH 1181 I HOH 21 1_555 A HOH 1190 I HOH 21 1_555 A SER 22 A SER 23 5 1_555 A ATP 1001 C ATP 5 1_555 A HOH 1129 I HOH 5 1_555 A HOH 1130 I HOH 5 1_555 A HOH 1131 I HOH 5 1_555 A ASN 107 A ASN 108 8 1_555 A ILE 141 A ILE 142 8 1_555 A ILE 154 A ILE 155 8 1_555 A ASN 156 A ASN 157 8 1_555 A HOH 1154 I HOH 8 1_555 A HOH 1176 I HOH 8 1_555 B ILE 141 B ILE 142 8 1_555 B LYS 142 B LYS 143 8 1_555 B SER 16 B SER 17 19 1_555 B SER 17 B SER 18 19 1_555 B GLY 18 B GLY 19 19 1_555 B SER 19 B SER 20 19 1_555 B GLY 20 B GLY 21 19 1_555 B LYS 21 B LYS 22 19 1_555 B SER 22 B SER 23 19 1_555 B THR 23 B THR 24 19 1_555 B ARG 116 B ARG 117 19 1_555 B ARG 120 B ARG 121 19 1_555 B MG 1002 G MG 19 1_555 B HOH 1118 J HOH 19 1_555 B HOH 1119 J HOH 19 1_555 B HOH 1120 J HOH 19 1_555 B HOH 1130 J HOH 19 1_555 B HOH 1133 J HOH 19 1_555 B HOH 1138 J HOH 19 1_555 B HOH 1139 J HOH 19 1_555 B HOH 1151 J HOH 19 1_555 B SER 22 B SER 23 5 1_555 B ATP 1001 F ATP 5 1_555 B HOH 1118 J HOH 5 1_555 B HOH 1119 J HOH 5 1_555 B HOH 1120 J HOH 5 1_555 B PHE 100 B PHE 101 3 1_555 B ARG 150 B ARG 151 3 1_555 B TYR 151 B TYR 152 3 1_555 19 P 21 21 21