0.021289 0.000000 0.000000 0.000000 0.020171 0.000000 0.000000 0.000000 0.015757 0.00000 0.00000 0.00000 Bosch, D.E. Siderovski, D.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 46.973 49.577 63.464 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Co 2 58.933 COBALT (II) ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CO N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 288 2290 2302 10.1074/jbc.M112.417337 23209297 Structural Determinants of Ubiquitin Conjugation in Entamoeba histolytica. 2013 10.2210/pdb4gpr/pdb pdb_00004gpr 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2012-07-16 MAR scanner 300 mm plate double crystal SINGLE WAVELENGTH M x-ray 1 1.000 1.0 22-BM APS 1.000 SYNCHROTRON APS BEAMLINE 22-BM 17079.432 Ubiquitin-conjugating enzyme family protein 1 man polymer 58.933 COBALT (II) ION 1 syn non-polymer 18.015 water 179 nat water no no SAAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPN INKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP SAAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPN INKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample EHI_070750, EHI_083560, EhUbc5 5759 Entamoeba histolytica 562 Escherichia coli plasmid pLIC His 1 2.16 43.14 VAPOR DIFFUSION, HANGING DROP 7.5 EhUbc5 at 8 mg/mL concentration in buffer containing 50 mM HEPES and 100 mM NaCl was mixed 1:1 and equilibrated against crystallization solution (100 mM Tris, 14% (w/v) polyvinylpyrrolidone K 15, and 0.5 mM cobalt (II) chloride), pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Database references Database references Derived calculations Data collection Database references Derived calculations Refinement description 1 0 2012-12-12 1 1 2012-12-19 1 2 2013-02-13 1 3 2019-11-20 1 4 2023-09-13 _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_symmetry _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-08-21 REL REL CO COBALT (II) ION HOH water 2CP4 PDB entry 2CP4 PDB experimental model CO 1 2 CO CO 201 A HOH 1 3 HOH HOH 301 A HOH 2 3 HOH HOH 302 A HOH 3 3 HOH HOH 303 A HOH 4 3 HOH HOH 304 A HOH 5 3 HOH HOH 305 A HOH 6 3 HOH HOH 306 A HOH 7 3 HOH HOH 307 A HOH 8 3 HOH HOH 308 A HOH 9 3 HOH HOH 309 A HOH 10 3 HOH HOH 310 A HOH 11 3 HOH HOH 311 A HOH 12 3 HOH HOH 312 A HOH 13 3 HOH HOH 313 A HOH 14 3 HOH HOH 314 A HOH 15 3 HOH HOH 315 A HOH 16 3 HOH HOH 316 A HOH 17 3 HOH HOH 317 A HOH 18 3 HOH HOH 318 A HOH 19 3 HOH HOH 319 A HOH 20 3 HOH HOH 320 A HOH 21 3 HOH HOH 321 A HOH 22 3 HOH HOH 322 A HOH 23 3 HOH HOH 323 A HOH 24 3 HOH HOH 324 A HOH 25 3 HOH HOH 325 A HOH 26 3 HOH HOH 326 A HOH 27 3 HOH HOH 327 A HOH 28 3 HOH HOH 328 A HOH 29 3 HOH HOH 329 A HOH 30 3 HOH HOH 330 A HOH 31 3 HOH HOH 331 A HOH 32 3 HOH HOH 332 A HOH 33 3 HOH HOH 333 A HOH 34 3 HOH HOH 334 A HOH 35 3 HOH HOH 335 A HOH 36 3 HOH HOH 336 A HOH 37 3 HOH HOH 337 A HOH 38 3 HOH HOH 338 A HOH 39 3 HOH HOH 339 A HOH 40 3 HOH HOH 340 A HOH 41 3 HOH HOH 341 A HOH 42 3 HOH HOH 342 A HOH 43 3 HOH HOH 343 A HOH 44 3 HOH HOH 344 A HOH 45 3 HOH HOH 345 A HOH 46 3 HOH HOH 346 A HOH 47 3 HOH HOH 347 A HOH 48 3 HOH HOH 348 A HOH 49 3 HOH HOH 349 A HOH 50 3 HOH HOH 350 A HOH 51 3 HOH HOH 351 A HOH 52 3 HOH HOH 352 A HOH 53 3 HOH HOH 353 A HOH 54 3 HOH HOH 354 A HOH 55 3 HOH HOH 355 A HOH 56 3 HOH HOH 356 A HOH 57 3 HOH HOH 357 A HOH 58 3 HOH HOH 358 A HOH 59 3 HOH HOH 359 A HOH 60 3 HOH HOH 360 A HOH 61 3 HOH HOH 361 A HOH 62 3 HOH HOH 362 A HOH 63 3 HOH HOH 363 A HOH 64 3 HOH HOH 364 A HOH 65 3 HOH HOH 365 A HOH 66 3 HOH HOH 366 A HOH 67 3 HOH HOH 367 A HOH 68 3 HOH HOH 368 A HOH 69 3 HOH HOH 369 A HOH 70 3 HOH HOH 370 A HOH 71 3 HOH HOH 371 A HOH 72 3 HOH HOH 372 A HOH 73 3 HOH HOH 373 A HOH 74 3 HOH HOH 374 A HOH 75 3 HOH HOH 375 A HOH 76 3 HOH HOH 376 A HOH 77 3 HOH HOH 377 A HOH 78 3 HOH HOH 378 A HOH 79 3 HOH HOH 379 A HOH 80 3 HOH HOH 380 A HOH 81 3 HOH HOH 381 A HOH 82 3 HOH HOH 382 A HOH 83 3 HOH HOH 383 A HOH 84 3 HOH HOH 384 A HOH 85 3 HOH HOH 385 A HOH 86 3 HOH HOH 386 A HOH 87 3 HOH HOH 387 A HOH 88 3 HOH HOH 388 A HOH 89 3 HOH HOH 389 A HOH 90 3 HOH HOH 390 A HOH 91 3 HOH HOH 391 A HOH 92 3 HOH HOH 392 A HOH 93 3 HOH HOH 393 A HOH 94 3 HOH HOH 394 A HOH 95 3 HOH HOH 395 A HOH 96 3 HOH HOH 396 A HOH 97 3 HOH HOH 397 A HOH 98 3 HOH HOH 398 A HOH 99 3 HOH HOH 399 A HOH 100 3 HOH HOH 400 A HOH 101 3 HOH HOH 401 A HOH 102 3 HOH HOH 402 A HOH 103 3 HOH HOH 403 A HOH 104 3 HOH HOH 404 A HOH 105 3 HOH HOH 405 A HOH 106 3 HOH HOH 406 A HOH 107 3 HOH HOH 407 A HOH 108 3 HOH HOH 408 A HOH 109 3 HOH HOH 409 A HOH 110 3 HOH HOH 410 A HOH 111 3 HOH HOH 411 A HOH 112 3 HOH HOH 412 A HOH 113 3 HOH HOH 413 A HOH 114 3 HOH HOH 414 A HOH 115 3 HOH HOH 415 A HOH 116 3 HOH HOH 416 A HOH 117 3 HOH HOH 417 A HOH 118 3 HOH HOH 418 A HOH 119 3 HOH HOH 419 A HOH 120 3 HOH HOH 420 A HOH 121 3 HOH HOH 421 A HOH 122 3 HOH HOH 422 A HOH 123 3 HOH HOH 423 A HOH 124 3 HOH HOH 424 A HOH 125 3 HOH HOH 425 A HOH 126 3 HOH HOH 426 A HOH 127 3 HOH HOH 427 A HOH 128 3 HOH HOH 428 A HOH 129 3 HOH HOH 429 A HOH 130 3 HOH HOH 430 A HOH 131 3 HOH HOH 431 A HOH 132 3 HOH HOH 432 A HOH 133 3 HOH HOH 433 A HOH 134 3 HOH HOH 434 A HOH 135 3 HOH HOH 435 A HOH 136 3 HOH HOH 436 A HOH 137 3 HOH HOH 437 A HOH 138 3 HOH HOH 438 A HOH 139 3 HOH HOH 439 A HOH 140 3 HOH HOH 440 A HOH 141 3 HOH HOH 441 A HOH 142 3 HOH HOH 442 A HOH 143 3 HOH HOH 443 A HOH 144 3 HOH HOH 444 A HOH 145 3 HOH HOH 445 A HOH 146 3 HOH HOH 446 A HOH 147 3 HOH HOH 447 A HOH 148 3 HOH HOH 448 A HOH 149 3 HOH HOH 449 A HOH 150 3 HOH HOH 450 A HOH 151 3 HOH HOH 451 A HOH 152 3 HOH HOH 452 A HOH 153 3 HOH HOH 453 A HOH 154 3 HOH HOH 454 A HOH 155 3 HOH HOH 455 A HOH 156 3 HOH HOH 456 A HOH 157 3 HOH HOH 457 A HOH 158 3 HOH HOH 458 A HOH 159 3 HOH HOH 459 A HOH 160 3 HOH HOH 460 A HOH 161 3 HOH HOH 461 A HOH 162 3 HOH HOH 462 A HOH 163 3 HOH HOH 463 A HOH 164 3 HOH HOH 464 A HOH 165 3 HOH HOH 465 A HOH 166 3 HOH HOH 466 A HOH 167 3 HOH HOH 467 A HOH 168 3 HOH HOH 468 A HOH 169 3 HOH HOH 469 A HOH 170 3 HOH HOH 470 A HOH 171 3 HOH HOH 471 A HOH 172 3 HOH HOH 472 A HOH 173 3 HOH HOH 473 A HOH 174 3 HOH HOH 474 A HOH 175 3 HOH HOH 475 A HOH 176 3 HOH HOH 476 A HOH 177 3 HOH HOH 477 A HOH 178 3 HOH HOH 478 A HOH 179 3 HOH HOH 479 A n 1 -2 A ALA -1 n 2 ALA -1 A ALA 0 n 3 ALA 0 A MET 1 n 4 MET 1 A ALA 2 n 5 ALA 2 A MET 3 n 6 MET 3 A ARG 4 n 7 ARG 4 A ARG 5 n 8 ARG 5 A ILE 6 n 9 ILE 6 A GLN 7 n 10 GLN 7 A LYS 8 n 11 LYS 8 A GLU 9 n 12 GLU 9 A LEU 10 n 13 LEU 10 A ARG 11 n 14 ARG 11 A GLU 12 n 15 GLU 12 A ILE 13 n 16 ILE 13 A GLN 14 n 17 GLN 14 A GLN 15 n 18 GLN 15 A ASP 16 n 19 ASP 16 A PRO 17 n 20 PRO 17 A PRO 18 n 21 PRO 18 A CYS 19 n 22 CYS 19 A ASN 20 n 23 ASN 20 A CYS 21 n 24 CYS 21 A SER 22 n 25 SER 22 A ALA 23 n 26 ALA 23 A GLY 24 n 27 GLY 24 A PRO 25 n 28 PRO 25 A VAL 26 n 29 VAL 26 A GLY 27 n 30 GLY 27 A ASP 28 n 31 ASP 28 A ASP 29 n 32 ASP 29 A ILE 30 n 33 ILE 30 A PHE 31 n 34 PHE 31 A HIS 32 n 35 HIS 32 A TRP 33 n 36 TRP 33 A THR 34 n 37 THR 34 A ALA 35 n 38 ALA 35 A THR 36 n 39 THR 36 A ILE 37 n 40 ILE 37 A THR 38 n 41 THR 38 A GLY 39 n 42 GLY 39 A PRO 40 n 43 PRO 40 A ASP 41 n 44 ASP 41 A ASP 42 n 45 ASP 42 A SER 43 n 46 SER 43 A PRO 44 n 47 PRO 44 A TYR 45 n 48 TYR 45 A GLN 46 n 49 GLN 46 A GLY 47 n 50 GLY 47 A GLY 48 n 51 GLY 48 A LEU 49 n 52 LEU 49 A PHE 50 n 53 PHE 50 A PHE 51 n 54 PHE 51 A LEU 52 n 55 LEU 52 A ASP 53 n 56 ASP 53 A VAL 54 n 57 VAL 54 A HIS 55 n 58 HIS 55 A PHE 56 n 59 PHE 56 A PRO 57 n 60 PRO 57 A VAL 58 n 61 VAL 58 A ASP 59 n 62 ASP 59 A TYR 60 n 63 TYR 60 A PRO 61 n 64 PRO 61 A PHE 62 n 65 PHE 62 A LYS 63 n 66 LYS 63 A ALA 64 n 67 ALA 64 A PRO 65 n 68 PRO 65 A ARG 66 n 69 ARG 66 A VAL 67 n 70 VAL 67 A THR 68 n 71 THR 68 A PHE 69 n 72 PHE 69 A MET 70 n 73 MET 70 A THR 71 n 74 THR 71 A LYS 72 n 75 LYS 72 A VAL 73 n 76 VAL 73 A TYR 74 n 77 TYR 74 A HIS 75 n 78 HIS 75 A PRO 76 n 79 PRO 76 A ASN 77 n 80 ASN 77 A ILE 78 n 81 ILE 78 A ASN 79 n 82 ASN 79 A LYS 80 n 83 LYS 80 A ASN 81 n 84 ASN 81 A GLY 82 n 85 GLY 82 A VAL 83 n 86 VAL 83 A ILE 84 n 87 ILE 84 A CYS 85 n 88 CYS 85 A LEU 86 n 89 LEU 86 A ASP 87 n 90 ASP 87 A ILE 88 n 91 ILE 88 A LEU 89 n 92 LEU 89 A LYS 90 n 93 LYS 90 A ASP 91 n 94 ASP 91 A GLN 92 n 95 GLN 92 A TRP 93 n 96 TRP 93 A SER 94 n 97 SER 94 A PRO 95 n 98 PRO 95 A ALA 96 n 99 ALA 96 A LEU 97 n 100 LEU 97 A THR 98 n 101 THR 98 A LEU 99 n 102 LEU 99 A SER 100 n 103 SER 100 A ARG 101 n 104 ARG 101 A VAL 102 n 105 VAL 102 A LEU 103 n 106 LEU 103 A LEU 104 n 107 LEU 104 A SER 105 n 108 SER 105 A ILE 106 n 109 ILE 106 A SER 107 n 110 SER 107 A SER 108 n 111 SER 108 A LEU 109 n 112 LEU 109 A LEU 110 n 113 LEU 110 A THR 111 n 114 THR 111 A ASP 112 n 115 ASP 112 A PRO 113 n 116 PRO 113 A ASN 114 n 117 ASN 114 A PRO 115 n 118 PRO 115 A SER 116 n 119 SER 116 A ASP 117 n 120 ASP 117 A PRO 118 n 121 PRO 118 A LEU 119 n 122 LEU 119 A ASP 120 n 123 ASP 120 A PRO 121 n 124 PRO 121 A GLU 122 n 125 GLU 122 A VAL 123 n 126 VAL 123 A ALA 124 n 127 ALA 124 A ASN 125 n 128 ASN 125 A VAL 126 n 129 VAL 126 A LEU 127 n 130 LEU 127 A ARG 128 n 131 ARG 128 A ALA 129 n 132 ALA 129 A ASN 130 n 133 ASN 130 A LYS 131 n 134 LYS 131 A LYS 132 n 135 LYS 132 A GLN 133 n 136 GLN 133 A PHE 134 n 137 PHE 134 A GLU 135 n 138 GLU 135 A ASP 136 n 139 ASP 136 A THR 137 n 140 THR 137 A ALA 138 n 141 ALA 138 A ARG 139 n 142 ARG 139 A GLU 140 n 143 GLU 140 A TRP 141 n 144 TRP 141 A THR 142 n 145 THR 142 A ARG 143 n 146 ARG 143 A MET 144 n 147 MET 144 A TYR 145 n 148 TYR 145 A ALA 146 n 149 ALA 146 A ARG 147 n 150 ARG 147 A PRO 148 n 151 PRO 148 A 1.8784 -0.8358 -0.2897 1.2464 0.2640 0.9356 0.0496 0.0741 -0.0365 -0.0496 -0.0097 0.0981 -0.0369 -0.1692 -0.0146 0.0641 0.0139 -0.0522 0.0613 0.0098 0.1185 refined -14.2929 8.5744 -3.7804 X-RAY DIFFRACTION 2.3333 0.1162 0.4158 3.3948 0.9498 0.3293 -0.0125 -0.8863 -0.3283 0.5615 -0.1148 0.1886 0.1123 -0.0682 -0.1658 0.1298 0.0446 0.0049 0.4036 0.0457 0.1806 refined -7.6851 8.5908 6.3679 X-RAY DIFFRACTION 1.4399 0.3511 -0.1755 1.2009 0.1996 1.3884 -0.0870 0.0227 0.2710 0.0413 0.0018 0.4056 -0.1347 -0.1146 -2.4716 0.0322 0.0056 0.0453 0.0090 -0.0124 0.0334 refined -2.8489 9.3336 0.5974 X-RAY DIFFRACTION 1.4811 0.0238 0.5594 1.0512 -0.2662 0.5104 0.0281 0.0774 -0.0722 -0.0142 0.0502 0.1559 0.0208 -0.0328 0.8047 0.0856 -0.0147 0.0356 0.0454 -0.0160 0.0756 refined -1.5644 2.5707 1.5732 X-RAY DIFFRACTION 2.1680 -0.0531 -0.2269 1.8594 -0.9530 0.5175 0.0419 0.2959 0.0372 0.0725 -0.0133 0.0303 -0.1127 0.1690 -0.0296 0.0595 -0.0126 0.0069 0.0938 -0.0126 0.0689 refined 3.3412 2.6640 -0.4491 X-RAY DIFFRACTION 0.7479 0.7017 0.6081 0.8094 0.2801 1.8505 0.0656 0.1041 -0.3106 0.0658 -0.0512 -0.1739 0.0998 0.4570 0.7617 -0.0327 0.0144 0.0090 0.0305 -0.0174 0.0667 refined 8.3146 -2.7218 6.0112 X-RAY DIFFRACTION 4.5901 2.4925 0.5606 3.4543 -2.8785 4.9016 0.1165 0.2884 -1.0854 -0.4421 0.1409 -0.3383 0.8853 0.1781 1.2322 0.1591 0.0089 -0.0430 0.0847 -0.0180 0.2023 refined -2.6081 -9.7312 -2.8970 X-RAY DIFFRACTION 2.3894 1.9210 2.2695 2.5608 1.0931 2.6898 -0.0336 -0.1768 0.0524 -0.0230 0.0137 0.5560 -0.0187 -0.2789 1.0322 0.0669 -0.0098 -0.0252 0.0615 0.0203 0.1686 refined -10.0752 -2.7719 -2.3028 X-RAY DIFFRACTION 3.8118 0.5395 1.5166 1.2641 0.7052 6.1428 0.2546 -0.3599 -0.5979 0.2120 0.1451 0.0534 0.6246 0.0451 6.1670 0.0696 -0.0074 0.0490 0.0613 0.0182 0.1765 refined -1.9847 -4.8741 9.3745 X-RAY DIFFRACTION 4.6885 -0.0328 1.3454 2.5052 0.8744 7.4175 0.2133 0.1291 -0.1935 0.1221 -0.1756 0.3219 0.5498 -0.0297 -0.1219 0.1489 0.0396 0.0150 0.1263 -0.0536 0.1679 refined 9.0836 -12.4397 6.5732 X-RAY DIFFRACTION 0.2362 -0.1582 0.0959 0.4544 0.0576 0.0780 -0.0298 0.0701 -0.2946 0.0806 -0.0751 -0.0516 0.4344 0.3425 -1.6175 0.0872 0.3214 -0.0393 -0.0469 0.0515 0.1203 refined 13.6125 -12.0238 14.0864 X-RAY DIFFRACTION 1.5411 -0.4231 -0.2047 4.7959 -2.0202 1.1280 0.0391 -0.2985 0.1036 0.9284 -0.2941 -0.3838 -0.5134 0.4180 -0.9261 0.1843 -0.0434 -0.0383 0.2108 -0.0142 0.1068 refined 9.8757 1.4015 18.5450 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 (CHAIN A AND RESID 2:17) X-RAY DIFFRACTION 2 (CHAIN A AND RESID 18:25) X-RAY DIFFRACTION 3 (CHAIN A AND RESID 26:41) X-RAY DIFFRACTION 4 (CHAIN A AND RESID 42:64) X-RAY DIFFRACTION 5 (CHAIN A AND RESID 65:70) X-RAY DIFFRACTION 6 (CHAIN A AND RESID 71:86) X-RAY DIFFRACTION 7 (CHAIN A AND RESID 87:92) X-RAY DIFFRACTION 8 (CHAIN A AND RESID 93:101) X-RAY DIFFRACTION 9 (CHAIN A AND RESID 102:114) X-RAY DIFFRACTION 10 (CHAIN A AND RESID 115:120) X-RAY DIFFRACTION 11 (CHAIN A AND RESID 121:130) X-RAY DIFFRACTION 12 (CHAIN A AND RESID 131:148) author_and_software_defined_assembly PISA 1 monomeric A GLN 15 A OE1 GLN 18 1_555 A CO 201 B CO CO 4_455 A HIS 32 A NE2 HIS 35 1_555 51.2 A GLN 15 A OE1 GLN 18 1_555 A CO 201 B CO CO 4_455 A ASP 53 A OD1 ASP 56 1_555 50.8 A HIS 32 A NE2 HIS 35 1_555 A CO 201 B CO CO 4_455 A ASP 53 A OD1 ASP 56 1_555 7.5 A GLN 15 A OE1 GLN 18 1_555 A CO 201 B CO CO 4_455 A ASP 53 A OD2 ASP 56 1_555 52.1 A HIS 32 A NE2 HIS 35 1_555 A CO 201 B CO CO 4_455 A ASP 53 A OD2 ASP 56 1_555 8.3 A ASP 53 A OD1 ASP 56 1_555 A CO 201 B CO CO 4_455 A ASP 53 A OD2 ASP 56 1_555 1.4 A GLN 15 A OE1 GLN 18 1_555 A CO 201 B CO CO 4_455 A HIS 55 A NE2 HIS 58 1_555 47.0 A HIS 32 A NE2 HIS 35 1_555 A CO 201 B CO CO 4_455 A HIS 55 A NE2 HIS 58 1_555 5.4 A ASP 53 A OD1 ASP 56 1_555 A CO 201 B CO CO 4_455 A HIS 55 A NE2 HIS 58 1_555 5.4 A ASP 53 A OD2 ASP 56 1_555 A CO 201 B CO CO 4_455 A HIS 55 A NE2 HIS 58 1_555 6.9 A GLN 15 A OE1 GLN 18 1_555 A CO 201 B CO CO 4_455 A HOH 305 C O HOH 1_555 52.9 A HIS 32 A NE2 HIS 35 1_555 A CO 201 B CO CO 4_455 A HOH 305 C O HOH 1_555 2.4 A ASP 53 A OD1 ASP 56 1_555 A CO 201 B CO CO 4_455 A HOH 305 C O HOH 1_555 6.2 A ASP 53 A OD2 ASP 56 1_555 A CO 201 B CO CO 4_455 A HOH 305 C O HOH 1_555 6.7 A HIS 55 A NE2 HIS 58 1_555 A CO 201 B CO CO 4_455 A HOH 305 C O HOH 1_555 6.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N SER 22 A N SER 25 A O THR 36 A O THR 39 A N ALA 35 A N ALA 38 A O LEU 52 A O LEU 55 A N ASP 53 A N ASP 56 A O THR 68 A O THR 71 1 A SER -2 A SER 1 1 Y 1 A A O O HOH HOH 447 463 1.90 1 A A O O HOH HOH 457 462 1.99 1 A A OXT O PRO HOH 148 473 1.99 1 A A O O HOH HOH 419 438 2.02 1 A A O O ASN HOH 114 341 2.05 1 A A O O HOH HOH 359 402 2.07 1 A A O O HOH HOH 362 407 2.08 1 A A ND2 O ASN HOH 114 459 2.13 1 A A O O HOH HOH 436 439 2.16 1 A A O O HOH HOH 360 401 2.17 1 3.56 0.50 120.30 123.86 A A A NE CZ NH1 ARG ARG ARG 128 128 128 N 1 -3.55 0.50 120.30 116.75 A A A NE CZ NH2 ARG ARG ARG 128 128 128 N 1 A ASP 16 -156.28 66.36 1 A LYS 90 -128.60 -117.68 0.2022 0.1706 0.1737 1.60 39.069 1998 20111 19950 10.02 99.20 0.15 RANDOM 1 1.34 MOLECULAR REPLACEMENT 19.29 0.90 1.11 PDB entry 2CP4 ML FLAT BULK SOLVENT MODEL 1.60 39.069 179 1375 1 0 1195 0.014 1229 1.504 1678 13.000 462 0.099 183 0.009 222 0.2595 0.2057 1.6417 137 1148 91.00 0.2484 0.1966 1.6860 138 1243 99.00 0.2134 0.1833 1.7357 145 1264 100.00 0.2243 0.1904 1.7917 130 1282 100.00 0.2508 0.1809 1.8557 138 1263 100.00 0.2453 0.1792 1.9300 144 1294 100.00 0.2112 0.1756 2.0178 147 1273 100.00 0.2134 0.1612 2.1242 140 1284 100.00 0.1966 0.1691 2.2573 144 1286 100.00 0.2040 0.1671 2.4316 142 1288 100.00 0.2050 0.1813 2.6762 147 1291 100.00 0.2122 0.1748 3.0633 143 1308 100.00 0.1939 0.1651 3.8589 146 1330 100.00 0.1692 0.1584 39.0808 157 1398 100.00 14.9 1.60 50.0 4GPR 20139 19998 1.34 0 0.044 1 45.6 8.2 99.3 0.309 1.60 1.61 2.8 1 3.7 87.3 data collection HKL-2000 model building PHENIX AutoMR refinement PHENIX (phenix.refine: 1.8_1069) data reduction HKL-2000 data scaling HKL-2000 phasing PHENIX AutoMR Crystal structure of EhUbc5, a ubiquitin conjugating enzyme from Entamoeba histolytica 1 N N 2 N N 3 N N A ALA -1 A ALA 2 HELX_P A ASP 16 A ASP 19 1 1 18 A LEU 86 A LEU 89 HELX_P A LYS 90 A LYS 93 5 2 5 A THR 98 A THR 101 HELX_P A ASP 112 A ASP 115 1 3 15 A ASP 120 A ASP 123 HELX_P A ASN 130 A ASN 133 1 4 11 A ASN 130 A ASN 133 HELX_P A ALA 146 A ALA 149 1 5 17 metalc 2.157 A GLN 15 A OE1 GLN 18 1_555 A CO 201 B CO CO 4_455 metalc 2.113 A HIS 32 A NE2 HIS 35 1_555 A CO 201 B CO CO 1_555 metalc 2.203 A ASP 53 A OD1 ASP 56 1_555 A CO 201 B CO CO 1_555 metalc 2.226 A ASP 53 A OD2 ASP 56 1_555 A CO 201 B CO CO 1_555 metalc 2.161 A HIS 55 A NE2 HIS 58 1_555 A CO 201 B CO CO 1_555 metalc 2.115 A CO 201 B CO CO 1_555 A HOH 305 C O HOH 1_555 LIGASE E2, Ubiquitin conjugating enzyme, ubiquitin conjugation, EhUba1, EhRING1, thiol esterification, LIGASE A TYR 60 A TYR 63 1 A PRO 61 A PRO 64 6.00 C4M5T2_ENTHI UNP 1 1 C4M5T2 MAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK NGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 1 148 4GPR 1 148 C4M5T2 A 1 4 151 1 expression tag SER -2 4GPR A C4M5T2 UNP 1 1 expression tag ALA -1 4GPR A C4M5T2 UNP 2 1 expression tag ALA 0 4GPR A C4M5T2 UNP 3 4 anti-parallel anti-parallel anti-parallel A CYS 21 A CYS 24 A PRO 25 A PRO 28 A HIS 32 A HIS 35 A THR 38 A THR 41 A LEU 49 A LEU 52 A HIS 55 A HIS 58 A ARG 66 A ARG 69 A PHE 69 A PHE 72 BINDING SITE FOR RESIDUE CO A 201 A CO 201 Software 5 A GLN 15 A GLN 18 5 4_555 A HIS 32 A HIS 35 5 1_555 A ASP 53 A ASP 56 5 1_555 A HIS 55 A HIS 58 5 1_555 A HOH 305 C HOH 5 1_555 19 P 21 21 21