0.011382 0.000000 0.001500 0.000000 0.017323 0.000000 0.000000 0.000000 0.008540 0.00000 0.00000 0.00000 Sun, S. Rossmann, M.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 97.51 90.00 87.859 57.726 118.108 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing US Elife 2050-084X 2 e00435 e00435 10.7554/eLife.00435 23577234 Structural analyses at pseudo atomic resolution of Chikungunya virus and antibodies show mechanisms of neutralization. 2013 10.2210/pdb4gq9/pdb pdb_00004gq9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 mirrors CCD 2010-10-23 MARMOSAIC 300 mm CCD Double crystal cryo-cooled Si(111) SINGLE WAVELENGTH M x-ray 1 0.96801 1.0 23-ID-B APS 0.96801 SYNCHROTRON APS BEAMLINE 23-ID-B 23303.777 Chikungunya virus neutralizing antibody 9.8B Fab fragment light chain 1 nat polymer 23441.291 Chikungunya virus neutralizing antibody 9.8B Fab fragment heavy chain 1 nat polymer no no QIVLTQSPAIMSASPGEKVTMTCSASSSVTYMYWYQQKPGSSPRLLIYDTSNLASGVPVRFSGSGSGTSYSLTISRMEAE DAATYYCQQRTNYPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE QIVLTQSPAIMSASPGEKVTMTCSASSSVTYMYWYQQKPGSSPRLLIYDTSNLASGVPVRFSGSGSGTSYSLTISRMEAE DAATYYCQQRTNYPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE L polypeptide(L) no no QVQLQQPGAELVRPGSSVKLSCKASGYTFTSKWMHWVKQRPIQGLEWIGNIDPSDSETHYNQKFKDKATLTVDKSSSTAY MQLSSLTSEDSAVYYCARGVTRGYFDVWGTGTTVTVSSAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWN SGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTKVDKKIEPR QVQLQQPGAELVRPGSSVKLSCKASGYTFTSKWMHWVKQRPIQGLEWIGNIDPSDSETHYNQKFKDKATLTVDKSSSTAY MQLSSLTSEDSAVYYCARGVTRGYFDVWGTGTTVTVSSAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWN SGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTKVDKKIEPR H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 10090 Mus musculus sample 10090 Mus musculus 1 3.18 61.27 VAPOR DIFFUSION, HANGING DROP 8.5 25% PEG 3350, 0.1M Tris-Cl pH 8.5 and 0.2M lithium sulfate., VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 audit_author chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Structure summary Data collection Database references Refinement description 1 0 2013-07-10 1 1 2018-01-24 1 2 2023-09-13 _audit_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 2012-08-22 REL REL 3DGG PDB ENTRY 3DGG PDB experimental model GLN 1 n 1 GLN 1 L ILE 2 n 2 ILE 2 L VAL 3 n 3 VAL 3 L LEU 4 n 4 LEU 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L ALA 9 n 9 ALA 9 L ILE 10 n 10 ILE 10 L MET 11 n 11 MET 11 L SER 12 n 12 SER 12 L ALA 13 n 13 ALA 13 L SER 14 n 14 SER 14 L PRO 15 n 15 PRO 15 L GLY 16 n 16 GLY 16 L GLU 17 n 17 GLU 17 L LYS 18 n 18 LYS 18 L VAL 19 n 19 VAL 19 L THR 20 n 20 THR 20 L MET 21 n 21 MET 21 L THR 22 n 22 THR 22 L CYS 23 n 23 CYS 23 L SER 24 n 24 SER 24 L ALA 25 n 25 ALA 25 L SER 26 n 26 SER 26 L SER 27 n 27 SER 27 L SER 28 n 28 SER 28 L VAL 29 n 29 VAL 29 L THR 30 n 30 THR 30 L TYR 31 n 31 TYR 31 L MET 32 n 32 MET 32 L TYR 33 n 33 TYR 33 L TRP 34 n 34 TRP 34 L TYR 35 n 35 TYR 35 L GLN 36 n 36 GLN 36 L GLN 37 n 37 GLN 37 L LYS 38 n 38 LYS 38 L PRO 39 n 39 PRO 39 L GLY 40 n 40 GLY 40 L SER 41 n 41 SER 41 L SER 42 n 42 SER 42 L PRO 43 n 43 PRO 43 L ARG 44 n 44 ARG 44 L LEU 45 n 45 LEU 45 L LEU 46 n 46 LEU 46 L ILE 47 n 47 ILE 47 L TYR 48 n 48 TYR 48 L ASP 49 n 49 ASP 49 L THR 50 n 50 THR 50 L SER 51 n 51 SER 51 L ASN 52 n 52 ASN 52 L LEU 53 n 53 LEU 53 L ALA 54 n 54 ALA 54 L SER 55 n 55 SER 55 L GLY 56 n 56 GLY 56 L VAL 57 n 57 VAL 57 L PRO 58 n 58 PRO 58 L VAL 59 n 59 VAL 59 L ARG 60 n 60 ARG 60 L PHE 61 n 61 PHE 61 L SER 62 n 62 SER 62 L GLY 63 n 63 GLY 63 L SER 64 n 64 SER 64 L GLY 65 n 65 GLY 65 L SER 66 n 66 SER 66 L GLY 67 n 67 GLY 67 L THR 68 n 68 THR 68 L SER 69 n 69 SER 69 L TYR 70 n 70 TYR 70 L SER 71 n 71 SER 71 L LEU 72 n 72 LEU 72 L THR 73 n 73 THR 73 L ILE 74 n 74 ILE 74 L SER 75 n 75 SER 75 L ARG 76 n 76 ARG 76 L MET 77 n 77 MET 77 L GLU 78 n 78 GLU 78 L ALA 79 n 79 ALA 79 L GLU 80 n 80 GLU 80 L ASP 81 n 81 ASP 81 L ALA 82 n 82 ALA 82 L ALA 83 n 83 ALA 83 L THR 84 n 84 THR 84 L TYR 85 n 85 TYR 85 L TYR 86 n 86 TYR 86 L CYS 87 n 87 CYS 87 L GLN 88 n 88 GLN 88 L GLN 89 n 89 GLN 89 L ARG 90 n 90 ARG 90 L THR 91 n 91 THR 91 L ASN 92 n 92 ASN 92 L TYR 93 n 93 TYR 93 L PRO 94 n 94 PRO 94 L LEU 95 n 95 LEU 95 L THR 96 n 96 THR 96 L PHE 97 n 97 PHE 97 L GLY 98 n 98 GLY 98 L ALA 99 n 99 ALA 99 L GLY 100 n 100 GLY 100 L THR 101 n 101 THR 101 L LYS 102 n 102 LYS 102 L LEU 103 n 103 LEU 103 L GLU 104 n 104 GLU 104 L LEU 105 n 105 LEU 105 L LYS 106 n 106 LYS 106 L ARG 107 n 107 ARG 107 L ALA 108 n 108 ALA 108 L ASP 109 n 109 ASP 109 L ALA 110 n 110 ALA 110 L ALA 111 n 111 ALA 111 L PRO 112 n 112 PRO 112 L THR 113 n 113 THR 113 L VAL 114 n 114 VAL 114 L SER 115 n 115 SER 115 L ILE 116 n 116 ILE 116 L PHE 117 n 117 PHE 117 L PRO 118 n 118 PRO 118 L PRO 119 n 119 PRO 119 L SER 120 n 120 SER 120 L SER 121 n 121 SER 121 L GLU 122 n 122 GLU 122 L GLN 123 n 123 GLN 123 L LEU 124 n 124 LEU 124 L THR 125 n 125 THR 125 L SER 126 n 126 SER 126 L GLY 127 n 127 GLY 127 L GLY 128 n 128 GLY 128 L ALA 129 n 129 ALA 129 L SER 130 n 130 SER 130 L VAL 131 n 131 VAL 131 L VAL 132 n 132 VAL 132 L CYS 133 n 133 CYS 133 L PHE 134 n 134 PHE 134 L LEU 135 n 135 LEU 135 L ASN 136 n 136 ASN 136 L ASN 137 n 137 ASN 137 L PHE 138 n 138 PHE 138 L TYR 139 n 139 TYR 139 L PRO 140 n 140 PRO 140 L LYS 141 n 141 LYS 141 L ASP 142 n 142 ASP 142 L ILE 143 n 143 ILE 143 L ASN 144 n 144 ASN 144 L VAL 145 n 145 VAL 145 L LYS 146 n 146 LYS 146 L TRP 147 n 147 TRP 147 L LYS 148 n 148 LYS 148 L ILE 149 n 149 ILE 149 L ASP 150 n 150 ASP 150 L GLY 151 n 151 GLY 151 L SER 152 n 152 SER 152 L GLU 153 n 153 GLU 153 L ARG 154 n 154 ARG 154 L GLN 155 n 155 GLN 155 L ASN 156 n 156 ASN 156 L GLY 157 n 157 GLY 157 L VAL 158 n 158 VAL 158 L LEU 159 n 159 LEU 159 L ASN 160 n 160 ASN 160 L SER 161 n 161 SER 161 L TRP 162 n 162 TRP 162 L THR 163 n 163 THR 163 L ASP 164 n 164 ASP 164 L GLN 165 n 165 GLN 165 L ASP 166 n 166 ASP 166 L SER 167 n 167 SER 167 L LYS 168 n 168 LYS 168 L ASP 169 n 169 ASP 169 L SER 170 n 170 SER 170 L THR 171 n 171 THR 171 L TYR 172 n 172 TYR 172 L SER 173 n 173 SER 173 L MET 174 n 174 MET 174 L SER 175 n 175 SER 175 L SER 176 n 176 SER 176 L THR 177 n 177 THR 177 L LEU 178 n 178 LEU 178 L THR 179 n 179 THR 179 L LEU 180 n 180 LEU 180 L THR 181 n 181 THR 181 L LYS 182 n 182 LYS 182 L ASP 183 n 183 ASP 183 L GLU 184 n 184 GLU 184 L TYR 185 n 185 TYR 185 L GLU 186 n 186 GLU 186 L ARG 187 n 187 ARG 187 L HIS 188 n 188 HIS 188 L ASN 189 n 189 ASN 189 L SER 190 n 190 SER 190 L TYR 191 n 191 TYR 191 L THR 192 n 192 THR 192 L CYS 193 n 193 CYS 193 L GLU 194 n 194 GLU 194 L ALA 195 n 195 ALA 195 L THR 196 n 196 THR 196 L HIS 197 n 197 HIS 197 L LYS 198 n 198 LYS 198 L THR 199 n 199 THR 199 L SER 200 n 200 SER 200 L THR 201 n 201 THR 201 L SER 202 n 202 SER 202 L PRO 203 n 203 PRO 203 L ILE 204 n 204 ILE 204 L VAL 205 n 205 VAL 205 L LYS 206 n 206 LYS 206 L SER 207 n 207 SER 207 L PHE 208 n 208 PHE 208 L ASN 209 n 209 ASN 209 L ARG 210 n 210 ARG 210 L ASN 211 n 211 ASN 211 L GLU 212 n 212 GLU 212 L GLN 1 n 1 GLN 1 H VAL 2 n 2 VAL 2 H GLN 3 n 3 GLN 3 H LEU 4 n 4 LEU 4 H GLN 5 n 5 GLN 5 H GLN 6 n 6 GLN 6 H PRO 7 n 7 PRO 7 H GLY 8 n 8 GLY 8 H ALA 9 n 9 ALA 9 H GLU 10 n 10 GLU 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H ARG 13 n 13 ARG 13 H PRO 14 n 14 PRO 14 H GLY 15 n 15 GLY 15 H SER 16 n 16 SER 16 H SER 17 n 17 SER 17 H VAL 18 n 18 VAL 18 H LYS 19 n 19 LYS 19 H LEU 20 n 20 LEU 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H LYS 23 n 23 LYS 23 H ALA 24 n 24 ALA 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H TYR 27 n 27 TYR 27 H THR 28 n 28 THR 28 H PHE 29 n 29 PHE 29 H THR 30 n 30 THR 30 H SER 31 n 31 SER 31 H LYS 32 n 32 LYS 32 H TRP 33 n 33 TRP 33 H MET 34 n 34 MET 34 H HIS 35 n 35 HIS 35 H TRP 36 n 36 TRP 36 H VAL 37 n 37 VAL 37 H LYS 38 n 38 LYS 38 H GLN 39 n 39 GLN 39 H ARG 40 n 40 ARG 40 H PRO 41 n 41 PRO 41 H ILE 42 n 42 ILE 42 H GLN 43 n 43 GLN 43 H GLY 44 n 44 GLY 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H ILE 48 n 48 ILE 48 H GLY 49 n 49 GLY 49 H ASN 50 n 50 ASN 50 H ILE 51 n 51 ILE 51 H ASP 52 n 52 ASP 52 H PRO 53 n 53 PRO 53 H SER 54 n 54 SER 54 H ASP 55 n 55 ASP 55 H SER 56 n 56 SER 56 H GLU 57 n 57 GLU 57 H THR 58 n 58 THR 58 H HIS 59 n 59 HIS 59 H TYR 60 n 60 TYR 60 H ASN 61 n 61 ASN 61 H GLN 62 n 62 GLN 62 H LYS 63 n 63 LYS 63 H PHE 64 n 64 PHE 64 H LYS 65 n 65 LYS 65 H ASP 66 n 66 ASP 66 H LYS 67 n 67 LYS 67 H ALA 68 n 68 ALA 68 H THR 69 n 69 THR 69 H LEU 70 n 70 LEU 70 H THR 71 n 71 THR 71 H VAL 72 n 72 VAL 72 H ASP 73 n 73 ASP 73 H LYS 74 n 74 LYS 74 H SER 75 n 75 SER 75 H SER 76 n 76 SER 76 H SER 77 n 77 SER 77 H THR 78 n 78 THR 78 H ALA 79 n 79 ALA 79 H TYR 80 n 80 TYR 80 H MET 81 n 81 MET 81 H GLN 82 n 82 GLN 82 H LEU 83 n 83 LEU 83 H SER 84 n 84 SER 84 H SER 85 n 85 SER 85 H LEU 86 n 86 LEU 86 H THR 87 n 87 THR 87 H SER 88 n 88 SER 88 H GLU 89 n 89 GLU 89 H ASP 90 n 90 ASP 90 H SER 91 n 91 SER 91 H ALA 92 n 92 ALA 92 H VAL 93 n 93 VAL 93 H TYR 94 n 94 TYR 94 H TYR 95 n 95 TYR 95 H CYS 96 n 96 CYS 96 H ALA 97 n 97 ALA 97 H ARG 98 n 98 ARG 98 H GLY 99 n 99 GLY 99 H VAL 100 n 100 VAL 100 H THR 101 n 101 THR 101 H ARG 102 n 102 ARG 102 H GLY 103 n 103 GLY 103 H TYR 104 n 104 TYR 104 H PHE 105 n 105 PHE 105 H ASP 106 n 106 ASP 106 H VAL 107 n 107 VAL 107 H TRP 108 n 108 TRP 108 H GLY 109 n 109 GLY 109 H THR 110 n 110 THR 110 H GLY 111 n 111 GLY 111 H THR 112 n 112 THR 112 H THR 113 n 113 THR 113 H VAL 114 n 114 VAL 114 H THR 115 n 115 THR 115 H VAL 116 n 116 VAL 116 H SER 117 n 117 SER 117 H SER 118 n 118 SER 118 H ALA 119 n 119 ALA 119 H LYS 120 n 120 LYS 120 H THR 121 n 121 THR 121 H THR 122 n 122 THR 122 H ALA 123 n 123 ALA 123 H PRO 124 n 124 PRO 124 H SER 125 n 125 SER 125 H VAL 126 n 126 VAL 126 H TYR 127 n 127 TYR 127 H PRO 128 n 128 PRO 128 H LEU 129 n 129 LEU 129 H ALA 130 n 130 ALA 130 H PRO 131 n 131 PRO 131 H VAL 132 n 132 VAL 132 H CYS 133 n 133 CYS 133 H GLY 134 n 134 GLY 134 H GLY 135 n 135 GLY 135 H THR 136 n 136 THR 136 H THR 137 n 137 THR 137 H GLY 138 n 138 GLY 138 H SER 139 n 139 SER 139 H SER 140 n 140 SER 140 H VAL 141 n 141 VAL 141 H THR 142 n 142 THR 142 H LEU 143 n 143 LEU 143 H GLY 144 n 144 GLY 144 H CYS 145 n 145 CYS 145 H LEU 146 n 146 LEU 146 H VAL 147 n 147 VAL 147 H LYS 148 n 148 LYS 148 H GLY 149 n 149 GLY 149 H TYR 150 n 150 TYR 150 H PHE 151 n 151 PHE 151 H PRO 152 n 152 PRO 152 H GLU 153 n 153 GLU 153 H PRO 154 n 154 PRO 154 H VAL 155 n 155 VAL 155 H THR 156 n 156 THR 156 H LEU 157 n 157 LEU 157 H THR 158 n 158 THR 158 H TRP 159 n 159 TRP 159 H ASN 160 n 160 ASN 160 H SER 161 n 161 SER 161 H GLY 162 n 162 GLY 162 H SER 163 n 163 SER 163 H LEU 164 n 164 LEU 164 H SER 165 n 165 SER 165 H SER 166 n 166 SER 166 H GLY 167 n 167 GLY 167 H VAL 168 n 168 VAL 168 H HIS 169 n 169 HIS 169 H THR 170 n 170 THR 170 H PHE 171 n 171 PHE 171 H PRO 172 n 172 PRO 172 H ALA 173 n 173 ALA 173 H LEU 174 n 174 LEU 174 H LEU 175 n 175 LEU 175 H GLN 176 n 176 GLN 176 H SER 177 n 177 SER 177 H GLY 178 n 178 GLY 178 H LEU 179 n 179 LEU 179 H TYR 180 n 180 TYR 180 H THR 181 n 181 THR 181 H LEU 182 n 182 LEU 182 H SER 183 n 183 SER 183 H SER 184 n 184 SER 184 H SER 185 n 185 SER 185 H VAL 186 n 186 VAL 186 H THR 187 n 187 THR 187 H VAL 188 n 188 VAL 188 H THR 189 n 189 THR 189 H SER 190 n 190 SER 190 H ASN 191 n 191 ASN 191 H THR 192 n 192 THR 192 H TRP 193 n 193 TRP 193 H PRO 194 n 194 PRO 194 H SER 195 n 195 SER 195 H GLN 196 n 196 GLN 196 H THR 197 n 197 THR 197 H ILE 198 n 198 ILE 198 H THR 199 n 199 THR 199 H CYS 200 n 200 CYS 200 H ASN 201 n 201 ASN 201 H VAL 202 n 202 VAL 202 H ALA 203 n 203 ALA 203 H HIS 204 n 204 HIS 204 H PRO 205 n 205 PRO 205 H ALA 206 n 206 ALA 206 H SER 207 n 207 SER 207 H SER 208 n 208 SER 208 H THR 209 n 209 THR 209 H LYS 210 n 210 LYS 210 H VAL 211 n 211 VAL 211 H ASP 212 n 212 ASP 212 H LYS 213 n 213 LYS 213 H LYS 214 n 214 LYS 214 H ILE 215 n 215 ILE 215 H GLU 216 n 216 GLU 216 H PRO 217 n 217 PRO 217 H ARG 218 n 218 ARG 218 H 6.7245 -0.3208 0.4994 7.6314 0.4386 5.5370 -0.0557 0.6203 -0.3623 -0.4869 0.0814 0.0858 0.4370 0.1445 -0.0257 0.1625 -0.0518 0.0575 0.1487 -0.0767 0.0714 refined -24.1931 -5.3382 46.7465 X-RAY DIFFRACTION 8.2473 1.8107 -3.2993 8.0835 -2.2751 6.3136 -0.0783 0.7431 -0.3054 -1.7219 -0.2386 -0.8359 0.2569 0.7387 0.3169 1.5952 0.0468 -0.0798 1.3388 -0.3531 0.2677 refined -22.7657 -1.4664 10.1907 X-RAY DIFFRACTION 6.3499 -0.0586 0.2512 5.7998 1.1451 5.8852 -0.1721 0.5704 0.3375 -0.4211 0.0928 -0.2030 -0.3135 0.3590 0.0792 0.1803 -0.0590 -0.0623 0.1703 0.0364 0.1093 refined -15.8368 15.3073 46.4389 X-RAY DIFFRACTION 14.2985 0.2292 1.4797 3.9487 0.6612 2.1688 0.1275 1.0258 0.7980 -1.2551 -0.2941 1.0899 0.1233 -0.2919 0.1666 1.4290 0.0503 -0.3025 1.4264 0.2253 0.4337 refined -30.3466 12.7728 13.5418 X-RAY DIFFRACTION L 1 L 106 X-RAY DIFFRACTION 1 L 107 L 212 X-RAY DIFFRACTION 2 H 1 H 118 X-RAY DIFFRACTION 3 H 119 H 218 X-RAY DIFFRACTION 4 author_and_software_defined_assembly PISA 2 dimeric 3400 -24 20480 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L N THR 5 A N THR 5 L O SER 24 A O SER 24 L N VAL 19 A N VAL 19 L O ILE 74 A O ILE 74 L N MET 11 A N MET 11 L O LYS 102 A O LYS 102 L O THR 101 A O THR 101 L N TYR 85 A N TYR 85 L O THR 84 A O THR 84 L N GLN 37 A N GLN 37 L N GLN 36 A N GLN 36 L O ARG 44 A O ARG 44 L N TYR 48 A N TYR 48 L O ASN 52 A O ASN 52 L N THR 113 A N THR 113 L O ASN 136 A O ASN 136 L N CYS 133 A N CYS 133 L O SER 176 A O SER 176 L O SER 175 A O SER 175 L N SER 161 A N SER 161 L O SER 152 A O SER 152 L N ILE 149 A N ILE 149 L N ASN 144 A N ASN 144 L O THR 196 A O THR 196 L N ALA 195 A N ALA 195 L O ILE 204 A O ILE 204 H N GLN 5 B N GLN 5 H O LYS 23 B O LYS 23 H N GLU 10 B N GLU 10 H O THR 115 B O THR 115 H O THR 112 B O THR 112 H N TYR 94 B N TYR 94 H O TYR 95 B O TYR 95 H N VAL 37 B N VAL 37 H N LYS 38 B N LYS 38 H O GLU 46 B O GLU 46 H N ASN 50 B N ASN 50 H O HIS 59 B O HIS 59 H N LEU 20 B N LEU 20 H O MET 81 B O MET 81 H O THR 78 B O THR 78 H N ASP 73 B N ASP 73 H N TYR 127 B N TYR 127 H O LEU 146 B O LEU 146 H N VAL 147 B N VAL 147 H O LEU 182 B O LEU 182 H O SER 185 B O SER 185 H N HIS 169 B N HIS 169 H N THR 158 B N THR 158 H O ASN 201 B O ASN 201 H N VAL 202 B N VAL 202 H O VAL 211 B O VAL 211 1 H H SER SER 76 77 68.45 1 L LEU 46 -104.52 -61.83 1 L THR 50 76.16 -52.04 1 L ARG 60 -165.35 -22.34 1 L ALA 82 -62.63 94.73 1 L ARG 90 -132.11 -147.14 1 L THR 91 48.62 19.75 1 L TYR 93 15.83 99.93 1 L LEU 95 75.29 58.62 1 L ASP 109 -26.45 122.89 1 L ASN 137 55.38 86.87 1 L ASP 150 57.44 16.81 1 H PRO 41 -42.41 -72.31 1 H GLN 43 -152.47 -11.54 1 H SER 54 -139.68 -71.34 1 H ASP 55 56.91 79.17 1 H ASP 66 -110.64 55.16 1 H SER 76 99.71 7.86 1 H SER 77 93.46 5.77 1 H LEU 86 63.19 104.21 1 H SER 91 -58.73 101.91 1 H THR 101 54.61 173.22 1 H SER 125 -120.43 -57.59 1 H VAL 126 69.63 118.26 1 H SER 161 59.49 6.78 1 H SER 165 -143.58 -24.07 1 H PRO 194 -94.89 39.57 82.987 -1.30 0.00 -1.72 2.05 0.00 -1.20 0.803 0.726 0.35930 0.32334 0.32510 0.32510 2.995 43.42 568 11921 11349 4.8 99.03 92.327 0.749 RANDOM 1 Isotropic THROUGHOUT 0 MOLECULAR REPLACEMENT 0.590 0.80 0.80 1.40 PDB ENTRY 3DGG MAXIMUM LIKELIHOOD MASK 2.995 43.42 0 3280 0 0 3280 0.006 0.022 3362 0.910 1.949 4584 3.944 5.000 428 33.398 24.206 126 14.516 15.000 541 10.535 15.000 13 0.062 0.200 523 0.002 0.020 2508 0.166 0.200 1182 0.288 0.200 2215 0.088 0.200 103 0.212 0.200 31 0.028 0.200 4 0.059 1.500 2200 0.106 2.000 3487 0.108 3.000 1358 0.181 4.500 1097 0.343 0.390 3.073 33 776 776 20 91.72 62.7 2.995 50 4GQ9 11921 11714 0 0 0.095 1 22.5 3.6 99.6 0.388 2.995 3.05 4.3 590 1 3.4 98.0 data collection HKL-2000 phasing PHASER refinement REFMAC 5.2.0019 data reduction HKL-2000 data scaling HKL-2000 Chikungunya virus neutralizing antibody 9.8B Fab fragment 1 N N 2 N N L GLU 78 A GLU 78 HELX_P L ALA 82 A ALA 82 5 1 5 L SER 120 A SER 120 HELX_P L GLY 127 A GLY 127 1 2 8 L LYS 182 A LYS 182 HELX_P L HIS 188 A HIS 188 1 3 7 H GLN 62 B GLN 62 HELX_P H LYS 65 B LYS 65 5 4 4 H SER 161 B SER 161 HELX_P H SER 163 B SER 163 5 5 3 disulf 2.034 L CYS 23 A SG CYS 23 1_555 L CYS 87 A SG CYS 87 1_555 disulf 2.033 L CYS 133 A SG CYS 133 1_555 L CYS 193 A SG CYS 193 1_555 disulf 2.030 H CYS 22 B SG CYS 22 1_555 H CYS 96 B SG CYS 96 1_555 disulf 2.035 H CYS 145 B SG CYS 145 1_555 H CYS 200 B SG CYS 200 1_555 VIRAL PROTEIN IgG fold, antibody, VIRAL PROTEIN L SER 7 A SER 7 1 L PRO 8 A PRO 8 -5.14 L TYR 93 A TYR 93 1 L PRO 94 A PRO 94 -3.81 L PRO 94 A PRO 94 1 L LEU 95 A LEU 95 14.69 L TYR 139 A TYR 139 1 L PRO 140 A PRO 140 3.33 H SER 54 B SER 54 1 H ASP 55 B ASP 55 2.16 H LYS 65 B LYS 65 1 H ASP 66 B ASP 66 -4.58 H SER 75 B SER 75 1 H SER 76 B SER 76 -27.92 H ARG 102 B ARG 102 1 H GLY 103 B GLY 103 1.08 H PHE 151 B PHE 151 1 H PRO 152 B PRO 152 -1.77 H GLU 153 B GLU 153 1 H PRO 154 B PRO 154 -5.22 H TRP 193 B TRP 193 1 H PRO 194 B PRO 194 0.53 4GQ9 PDB 1 4GQ9 4GQ9 PDB 2 4GQ9 1 212 4GQ9 1 212 4GQ9 L 1 1 212 1 218 4GQ9 1 218 4GQ9 H 2 1 218 3 6 4 4 2 6 3 4 3 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L LEU 4 A LEU 4 L SER 7 A SER 7 L VAL 19 A VAL 19 L VAL 29 A VAL 29 L PHE 61 A PHE 61 L ILE 74 A ILE 74 L ILE 10 A ILE 10 L ALA 13 A ALA 13 L THR 101 A THR 101 L LEU 105 A LEU 105 L THR 84 A THR 84 L GLN 89 A GLN 89 L MET 32 A MET 32 L GLN 37 A GLN 37 L ARG 44 A ARG 44 L TYR 48 A TYR 48 L ASN 52 A ASN 52 L LEU 53 A LEU 53 L THR 113 A THR 113 L PHE 117 A PHE 117 L GLY 128 A GLY 128 L PHE 138 A PHE 138 L TYR 172 A TYR 172 L THR 181 A THR 181 L VAL 158 A VAL 158 L TRP 162 A TRP 162 L SER 152 A SER 152 L ARG 154 A ARG 154 L ILE 143 A ILE 143 L ILE 149 A ILE 149 L SER 190 A SER 190 L HIS 197 A HIS 197 L ILE 204 A ILE 204 L ASN 209 A ASN 209 H GLN 3 B GLN 3 H GLN 5 B GLN 5 H LYS 23 B LYS 23 H SER 25 B SER 25 H ALA 9 B ALA 9 H VAL 12 B VAL 12 H THR 112 B THR 112 H VAL 116 B VAL 116 H ALA 92 B ALA 92 H GLY 99 B GLY 99 H TRP 33 B TRP 33 H ARG 40 B ARG 40 H GLY 44 B GLY 44 H ASP 52 B ASP 52 H GLU 57 B GLU 57 H TYR 60 B TYR 60 H VAL 18 B VAL 18 H LEU 20 B LEU 20 H THR 78 B THR 78 H LEU 83 B LEU 83 H ALA 68 B ALA 68 H ASP 73 B ASP 73 H TYR 127 B TYR 127 H LEU 129 B LEU 129 H SER 140 B SER 140 H TYR 150 B TYR 150 H LEU 179 B LEU 179 H THR 189 B THR 189 H VAL 168 B VAL 168 H GLN 176 B GLN 176 H THR 156 B THR 156 H TRP 159 B TRP 159 H THR 199 B THR 199 H HIS 204 B HIS 204 H THR 209 B THR 209 H LYS 214 B LYS 214 5 C 1 2 1