0.011706
0.000000
0.000000
0.000000
0.011706
0.000000
0.000000
0.000000
0.011706
0.00000
0.00000
0.00000
Boer, D.R.
Coll, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.00
90.00
90.00
85.429
85.429
85.429
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
C84 H50 N16 Ru2
1485.543
(mu-11,11'-bidipyrido[3,2-a:2',3'-c]phenazine-1kappa~2~N~4~,N~5~:2kappa~2~N~4'~,N~5'~)[tetrakis(1,10-phenanthroline-kappa~2~N~1~,N~10~)]diruthenium
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
Y
147
N
C
Y
148
N
C
Y
149
N
C
Y
150
N
N
Y
151
N
C
Y
152
N
C
Y
153
N
C
Y
154
N
C
Y
155
N
C
Y
156
N
N
Y
157
N
C
Y
158
N
C
Y
159
N
C
Y
160
N
C
Y
161
N
C
Y
162
N
C
Y
163
N
C
Y
164
N
N
Y
165
N
C
Y
166
N
C
Y
167
N
C
Y
168
N
C
Y
169
N
C
Y
170
N
N
Y
171
N
C
Y
172
N
C
Y
173
N
C
Y
174
N
C
Y
175
N
C
Y
176
N
C
Y
177
N
C
Y
178
N
N
Y
179
N
C
Y
180
N
C
Y
181
N
C
Y
182
N
C
Y
183
N
C
Y
184
N
N
Y
185
N
C
Y
186
N
C
Y
187
N
C
Y
188
N
C
Y
189
N
C
Y
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
C
Y
196
N
C
Y
197
N
C
Y
198
N
N
Y
199
N
C
Y
200
N
C
Y
201
N
C
Y
202
N
C
N
203
N
RU
N
204
N
RU
Y
205
N
C
Y
206
N
C
Y
207
N
C
Y
208
N
C
Y
209
N
C
Y
210
N
C
Y
211
N
N
Y
212
N
N
Y
213
N
C
Y
214
N
C
Y
215
N
C
Y
216
N
N
Y
217
N
C
Y
218
N
C
Y
219
N
C
Y
220
N
C
Y
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
Y
226
N
N
Y
227
N
C
Y
228
N
C
Y
229
N
C
Y
230
N
C
Y
231
N
C
Y
232
N
C
Y
233
N
N
Y
234
N
N
Y
235
N
C
Y
236
N
C
Y
237
N
C
Y
238
N
N
Y
239
N
C
Y
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
Y
248
N
N
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
sing
N
155
N
sing
Y
156
N
doub
Y
157
N
sing
N
158
N
sing
N
159
N
sing
Y
160
N
sing
Y
161
N
doub
Y
162
N
sing
Y
163
N
doub
Y
164
N
sing
N
165
N
sing
Y
166
N
doub
N
167
N
sing
Y
168
N
sing
Y
169
N
doub
Y
170
N
sing
Y
171
N
sing
Y
172
N
doub
N
173
N
sing
Y
174
N
sing
N
175
N
sing
N
176
N
sing
Y
177
N
doub
Y
178
N
sing
N
179
N
sing
Y
180
N
doub
N
181
N
sing
Y
182
N
sing
N
183
N
sing
Y
184
N
sing
Y
185
N
doub
Y
186
N
sing
Y
187
N
doub
Y
188
N
sing
N
189
N
sing
N
190
N
sing
Y
191
N
sing
Y
192
N
doub
Y
193
N
sing
Y
194
N
sing
Y
195
N
doub
N
196
N
sing
Y
197
N
doub
N
198
N
sing
Y
199
N
sing
N
200
N
sing
Y
201
N
doub
N
202
N
sing
Y
203
N
doub
Y
204
N
sing
N
205
N
sing
Y
206
N
sing
N
207
N
sing
Y
208
N
sing
N
209
N
sing
Y
210
N
doub
Y
211
N
doub
Y
212
N
sing
Y
213
N
sing
N
214
N
sing
Y
215
N
doub
N
216
N
sing
Y
217
N
sing
Y
218
N
sing
Y
219
N
doub
Y
220
N
sing
Y
221
N
doub
N
222
N
sing
N
223
N
sing
Y
224
N
sing
N
225
N
sing
Y
226
N
doub
N
227
N
sing
Y
228
N
sing
N
229
N
sing
Y
230
N
doub
Y
231
N
sing
N
232
N
sing
N
233
N
sing
Y
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
doub
Y
238
N
sing
N
239
N
sing
Y
240
N
doub
N
241
N
sing
Y
242
N
sing
Y
243
N
doub
Y
244
N
sing
Y
245
N
sing
Y
246
N
doub
N
247
N
sing
Y
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
doub
N
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
Y
266
N
sing
Y
267
N
doub
Y
268
N
sing
Y
269
N
sing
Y
270
N
doub
Y
271
N
sing
Y
272
N
sing
Y
273
N
sing
Y
274
N
sing
Y
275
N
doub
Y
276
N
doub
Y
277
N
sing
N
278
N
sing
Y
279
N
sing
N
280
N
sing
Y
281
N
doub
N
282
N
sing
Y
283
N
doub
Y
284
N
sing
Y
285
N
doub
Y
286
N
sing
N
287
N
sing
Y
288
N
sing
N
289
N
sing
Y
290
N
doub
N
291
N
sing
Y
292
N
doub
Y
293
N
sing
Y
294
N
doub
Y
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
Y
303
N
sing
Y
304
N
sing
Y
305
N
doub
Y
306
N
doub
Y
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
doub
Y
311
N
sing
N
312
N
sing
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
sing
N
317
N
sing
Y
318
N
sing
Y
319
N
sing
Y
320
N
sing
Y
321
N
sing
Y
322
N
doub
Y
323
N
doub
Y
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
GE
Angew.Chem.Int.Ed.Engl.
9999
1433-7851
53
1949
1952
10.1002/anie.201308070
24449275
Thread Insertion of a Bis(dipyridophenazine) Diruthenium Complex into the DNA Double Helix by the Extrusion of AT Base Pairs and Cross-Linking of DNA Duplexes.
2014
10.2210/pdb4gqj/pdb
pdb_00004gqj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-06-14
ADSC QUANTUM 315r
channel-cut Si(111) crystal
SINGLE WAVELENGTH
M
x-ray
1
1.07205
1.0
ID29
ESRF
1.07205
SYNCHROTRON
ESRF BEAMLINE ID29
1809.217
DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
2
syn
polymer
Synthesized by citation authors
1485.543
(mu-11,11'-bidipyrido[3,2-a:2',3'-c]phenazine-1kappa~2~N~4~,N~5~:2kappa~2~N~4'~,N~5'~)[tetrakis(1,10-phenanthroline-kappa~2~N~1~,N~10~)]diruthenium
1
syn
non-polymer
Synthesized by citation authors
18.015
water
16
nat
water
no
no
(DC)(DG)(DT)(DA)(DC)(DG)
CGTACG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
1
7.18
82.87
VAPOR DIFFUSION, SITTING DROP
8.0
buffer:
0.2 M KCl
10 mM MgCl2
35% hexanediol
50 mM TRIS.HCl pH 8
drop composition:
0.5 ul 10 mM binuclear Ru compound
0.5 ul 10 mM [ssDNA] 5'-d(CGTACG)-3'
1 ul cryst. buffer
0.5 ul , VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
-16.754
1
19
A
2
B
5
1.718
A_DG2:DC5_B
1
16.736
0.133
-0.676
0.052
7.213
1
20
A
3
B
4
2.185
A_DT3:DA4_B
2
8.564
-0.018
-0.226
-0.031
0.161
1
19
A
5
B
2
-0.325
A_DC5:DG2_B
3
20.340
-0.010
-0.237
-0.137
33.760
1
19
A
6
B
1
-0.517
A_DG6:DC1_B
4
7.144
0.196
0.442
0.100
2.747
22.160
A
A
2
3
12.642
B
B
5
4
2.793
4.808
-0.411
-0.046
AA_DG2DT3:DA4DC5_BB
1
-2.856
7.510
21.452
-1.688
0.138
6.888
60.780
A
A
3
5
4.788
B
B
4
2
6.754
4.825
-0.247
2.501
AA_DT3DC5:DG2DA4_BB
2
-9.058
8.988
59.989
1.983
-0.673
2.712
33.070
A
A
5
6
-8.391
B
B
2
1
2.806
-4.751
-0.462
0.722
AA_DC5DG6:DC1DG2_BB
3
-3.737
6.600
32.528
1.952
0.274
chem_comp_atom
chem_comp_bond
database_2
struct_site
entity
pdbx_entity_src_syn
repository
Initial release
Data collection
Database references
Derived calculations
Source and taxonomy
Structure summary
1
0
2014-03-05
1
1
2024-02-28
1
2
2024-03-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_entity.details
mononuclear Ru-dppz bound to DNA
mononuclear Ru-dppz bound to DNA
mononuclear Ru-dppz bound to DNA
mononuclear Ru-dppz bound to DNA
mononuclear Ru-dppz bound to DNA
RCSB
Y
RCSB
2012-08-23
REL
REL
RR2
(mu-11,11'-bidipyrido[3,2-a:2',3'-c]phenazine-1kappa~2~N~4~,N~5~:2kappa~2~N~4'~,N~5'~)[tetrakis(1,10-phenanthroline-kappa~2~N~1~,N~10~)]diruthenium
HOH
water
Acquired from biomers (Germany)
sample
RR2
1
2
RR2
RR2
101
A
HOH
2
3
HOH
HOH
201
A
HOH
5
3
HOH
HOH
202
A
HOH
12
3
HOH
HOH
203
A
HOH
13
3
HOH
HOH
204
A
HOH
20
3
HOH
HOH
205
A
HOH
21
3
HOH
HOH
206
A
HOH
22
3
HOH
HOH
207
A
HOH
27
3
HOH
HOH
208
A
HOH
28
3
HOH
HOH
209
A
HOH
29
3
HOH
HOH
210
A
HOH
30
3
HOH
HOH
211
A
HOH
31
3
HOH
HOH
212
A
HOH
1
3
HOH
HOH
101
B
HOH
6
3
HOH
HOH
102
B
HOH
14
3
HOH
HOH
103
B
HOH
18
3
HOH
HOH
104
B
DC
1
n
1
DC
1
A
DG
2
n
2
DG
2
A
DT
3
n
3
DT
3
A
DA
4
n
4
DA
4
A
DC
5
n
5
DC
5
A
DG
6
n
6
DG
6
A
DC
1
n
1
DC
1
B
DG
2
n
2
DG
2
B
DT
3
n
3
DT
3
B
DA
4
n
4
DA
4
B
DC
5
n
5
DC
5
B
DG
6
n
6
DG
6
B
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
13_545
y+3/4,x-3/4,-z+1/4
crystal symmetry operation
64.0717500000
-64.0717500000
21.3572500000
1
B
C4'
DG
6
B
C4'
DG
6
1
Y
1
B
O4'
DG
6
B
O4'
DG
6
1
Y
1
B
C3'
DG
6
B
C3'
DG
6
1
Y
1
B
O3'
DG
6
B
O3'
DG
6
1
Y
1
B
C2'
DG
6
B
C2'
DG
6
1
Y
1
B
C1'
DG
6
B
C1'
DG
6
1
Y
1
B
N9
DG
6
B
N9
DG
6
1
Y
1
B
C8
DG
6
B
C8
DG
6
1
Y
1
B
N7
DG
6
B
N7
DG
6
1
Y
1
B
C5
DG
6
B
C5
DG
6
1
Y
1
B
C6
DG
6
B
C6
DG
6
1
Y
1
B
O6
DG
6
B
O6
DG
6
1
Y
1
B
N1
DG
6
B
N1
DG
6
1
Y
1
B
C2
DG
6
B
C2
DG
6
1
Y
1
B
N2
DG
6
B
N2
DG
6
1
Y
1
B
N3
DG
6
B
N3
DG
6
1
Y
1
B
C4
DG
6
B
C4
DG
6
1
Y
1
2.52
0.30
108.30
110.82
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
-5.24
0.70
108.00
102.76
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
-5.25
0.80
102.40
97.15
A
A
A
C3'
C2'
C1'
DC
DC
DC
5
5
5
N
1
2.61
0.30
108.30
110.91
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
-2.80
0.40
104.50
101.70
B
B
B
O4'
C4'
C3'
DC
DC
DC
1
1
1
N
1
4.23
0.30
108.30
112.53
B
B
B
O4'
C1'
N1
DC
DC
DC
5
5
5
N
-0.0000
-0.0000
-0.0000
0.0000
0.0000
-0.0000
0.2065
0.1773
0.1786
2.951
38.205
104
2419
2396
4.34
95.34
0.29
RANDOM
1
1.36
SAD
19.82
0.72
1.00
ML
FLAT BULK SOLVENT MODEL
19.848
0.272
2.951
38.205
16
341
102
223
0
0.007
383
1.390
579
34.982
123
0.085
51
0.007
17
0.2065
0.1773
104
2292
95.00
73.4
2.95
50
4GQJ
2419
2419
0.0
-3.0
0.118
1
10.3
4.4
97
0.62
2.95
3.11
2.1
343
1
4.6
99
data collection
MxCuBE
phasing
SHELXS
refinement
PHENIX
(phenix.refine: 1.7.1_743)
data reduction
MOSFLM
data scaling
SCALA
Complex of a binuclear Ruthenium compound D,D-([mu-(11,11')-bi(dppz)-(1,10-phenanthroline)4-Ru2]4+) bound to d(CGTACG)
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
5
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
5
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
5
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
B
DA
4
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
B
DA
4
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
2
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
2
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
2
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
1
B
N4
DC
1
1_555
DNA
DNA recognition, DNA binsinf, DNA
4GQJ
PDB
1
4GQJ
CGTACG
1
6
4GQJ
1
6
4GQJ
A
1
1
6
1
6
4GQJ
1
6
4GQJ
B
1
1
6
BINDING SITE FOR RESIDUE RR2 A 101
A
RR2
101
Software
15
A
DC
1
A
DC
1
15
8_544
A
DG
2
A
DG
2
15
8_544
A
DT
3
A
DT
3
15
8_544
A
DT
3
A
DT
3
15
1_555
A
DA
4
A
DA
4
15
8_544
A
DA
4
A
DA
4
15
1_555
A
DC
5
A
DC
5
15
1_555
A
DG
6
A
DG
6
15
1_555
A
DG
6
A
DG
6
15
13_545
B
DC
1
B
DC
1
15
13_545
B
DG
2
B
DG
2
15
1_555
B
DT
3
B
DT
3
15
13_545
B
DA
4
B
DA
4
15
1_555
B
DC
5
B
DC
5
15
1_555
B
DC
5
B
DC
5
15
8_544
213
P 41 3 2