data_4GQJ # _entry.id 4GQJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4GQJ pdb_00004gqj 10.2210/pdb4gqj/pdb NDB NA2051 ? ? RCSB RCSB074512 ? ? WWPDB D_1000074512 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-05 2 'Structure model' 1 1 2024-02-28 3 'Structure model' 1 2 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' struct_site 5 3 'Structure model' entity 6 3 'Structure model' pdbx_entity_src_syn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 2 'Structure model' '_struct_site.pdbx_auth_seq_id' 6 3 'Structure model' '_entity.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4GQJ _pdbx_database_status.recvd_initial_deposition_date 2012-08-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3s80 'mononuclear Ru-dppz bound to DNA' unspecified PDB 3qrn 'mononuclear Ru-dppz bound to DNA' unspecified PDB 4e1u 'mononuclear Ru-dppz bound to DNA' unspecified PDB 3u38 'mononuclear Ru-dppz bound to DNA' unspecified PDB 4e7y 'mononuclear Ru-dppz bound to DNA' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boer, D.R.' 1 'Coll, M.' 2 # _citation.id primary _citation.title ;Thread Insertion of a Bis(dipyridophenazine) Diruthenium Complex into the DNA Double Helix by the Extrusion of AT Base Pairs and Cross-Linking of DNA Duplexes. ; _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 53 _citation.page_first 1949 _citation.page_last 1952 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24449275 _citation.pdbx_database_id_DOI 10.1002/anie.201308070 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boer, D.R.' 1 ? primary 'Wu, L.' 2 ? primary 'Lincoln, P.' 3 ? primary 'Coll, M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') ; 1809.217 2 ? ? ? ? 2 non-polymer syn ;(mu-11,11'-bidipyrido[3,2-a:2',3'-c]phenazine-1kappa~2~N~4~,N~5~:2kappa~2~N~4'~,N~5'~)[tetrakis(1,10-phenanthroline-kappa~2~N~1~,N~10~)]diruthenium ; 1485.543 1 ? ? ? 'Synthesized by citation authors' 3 water nat water 18.015 16 ? ? ? 'Synthesized by citation authors' # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(mu-11,11'-bidipyrido[3,2-a:2',3'-c]phenazine-1kappa~2~N~4~,N~5~:2kappa~2~N~4'~,N~5'~)[tetrakis(1,10-phenanthroline-kappa~2~N~1~,N~10~)]diruthenium ; RR2 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Acquired from biomers (Germany)' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 RR2 non-polymer . ;(mu-11,11'-bidipyrido[3,2-a:2',3'-c]phenazine-1kappa~2~N~4~,N~5~:2kappa~2~N~4'~,N~5'~)[tetrakis(1,10-phenanthroline-kappa~2~N~1~,N~10~)]diruthenium ; ? 'C84 H50 N16 Ru2' 1485.543 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DT 3 3 3 DT DT B . n B 1 4 DA 4 4 4 DA DA B . n B 1 5 DC 5 5 5 DC DC B . n B 1 6 DG 6 6 6 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RR2 1 101 1 RR2 RR2 A . D 3 HOH 1 201 2 HOH HOH A . D 3 HOH 2 202 5 HOH HOH A . D 3 HOH 3 203 12 HOH HOH A . D 3 HOH 4 204 13 HOH HOH A . D 3 HOH 5 205 20 HOH HOH A . D 3 HOH 6 206 21 HOH HOH A . D 3 HOH 7 207 22 HOH HOH A . D 3 HOH 8 208 27 HOH HOH A . D 3 HOH 9 209 28 HOH HOH A . D 3 HOH 10 210 29 HOH HOH A . D 3 HOH 11 211 30 HOH HOH A . D 3 HOH 12 212 31 HOH HOH A . E 3 HOH 1 101 1 HOH HOH B . E 3 HOH 2 102 6 HOH HOH B . E 3 HOH 3 103 14 HOH HOH B . E 3 HOH 4 104 18 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B DG 6 ? "C4'" ? B DG 6 "C4'" 2 1 Y 1 B DG 6 ? "O4'" ? B DG 6 "O4'" 3 1 Y 1 B DG 6 ? "C3'" ? B DG 6 "C3'" 4 1 Y 1 B DG 6 ? "O3'" ? B DG 6 "O3'" 5 1 Y 1 B DG 6 ? "C2'" ? B DG 6 "C2'" 6 1 Y 1 B DG 6 ? "C1'" ? B DG 6 "C1'" 7 1 Y 1 B DG 6 ? N9 ? B DG 6 N9 8 1 Y 1 B DG 6 ? C8 ? B DG 6 C8 9 1 Y 1 B DG 6 ? N7 ? B DG 6 N7 10 1 Y 1 B DG 6 ? C5 ? B DG 6 C5 11 1 Y 1 B DG 6 ? C6 ? B DG 6 C6 12 1 Y 1 B DG 6 ? O6 ? B DG 6 O6 13 1 Y 1 B DG 6 ? N1 ? B DG 6 N1 14 1 Y 1 B DG 6 ? C2 ? B DG 6 C2 15 1 Y 1 B DG 6 ? N2 ? B DG 6 N2 16 1 Y 1 B DG 6 ? N3 ? B DG 6 N3 17 1 Y 1 B DG 6 ? C4 ? B DG 6 C4 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MxCuBE 'data collection' . ? 1 SHELXS phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.1_743)' ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 4GQJ _cell.length_a 85.429 _cell.length_b 85.429 _cell.length_c 85.429 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4GQJ _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4GQJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 7.18 _exptl_crystal.density_percent_sol 82.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details ;buffer: 0.2 M KCl 10 mM MgCl2 35% hexanediol 50 mM TRIS.HCl pH 8 drop composition: 0.5 ul 10 mM binuclear Ru compound 0.5 ul 10 mM [ssDNA] 5'-d(CGTACG)-3' 1 ul cryst. buffer 0.5 ul , VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-06-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'channel-cut Si(111) crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.07205 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.07205 # _reflns.entry_id 4GQJ _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.95 _reflns.number_obs 2419 _reflns.number_all 2419 _reflns.percent_possible_obs 97 _reflns.pdbx_Rmerge_I_obs 0.118 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.3 _reflns.B_iso_Wilson_estimate 73.4 _reflns.pdbx_redundancy 4.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.95 _reflns_shell.d_res_low 3.11 _reflns_shell.percent_possible_all 99 _reflns_shell.Rmerge_I_obs 0.62 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 4.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 343 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4GQJ _refine.ls_number_reflns_obs 2396 _refine.ls_number_reflns_all 2419 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.205 _refine.ls_d_res_high 2.951 _refine.ls_percent_reflns_obs 95.34 _refine.ls_R_factor_obs 0.1786 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1773 _refine.ls_R_factor_R_free 0.2065 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.34 _refine.ls_number_reflns_R_free 104 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[3][3] -0.0000 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.272 _refine.solvent_model_param_bsol 19.848 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.72 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.29 _refine.pdbx_overall_phase_error 19.82 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 223 _refine_hist.pdbx_number_atoms_ligand 102 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 341 _refine_hist.d_res_high 2.951 _refine_hist.d_res_low 38.205 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.007 ? ? 383 ? 'X-RAY DIFFRACTION' f_angle_d 1.390 ? ? 579 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 34.982 ? ? 123 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.085 ? ? 51 ? 'X-RAY DIFFRACTION' f_plane_restr 0.007 ? ? 17 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.9511 _refine_ls_shell.d_res_low ? _refine_ls_shell.number_reflns_R_work 2292 _refine_ls_shell.R_factor_R_work 0.1773 _refine_ls_shell.percent_reflns_obs 95.00 _refine_ls_shell.R_factor_R_free 0.2065 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 104 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4GQJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4GQJ _struct.title ;Complex of a binuclear Ruthenium compound D,D-([mu-(11,11')-bi(dppz)-(1,10-phenanthroline)4-Ru2]4+) bound to d(CGTACG) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4GQJ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA recognition, DNA binsinf, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4GQJ _struct_ref.pdbx_db_accession 4GQJ _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code CGTACG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4GQJ A 1 ? 6 ? 4GQJ 1 ? 6 ? 1 6 2 1 4GQJ B 1 ? 6 ? 4GQJ 1 ? 6 ? 1 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 13_545 y+3/4,x-3/4,-z+1/4 0.0000000000 1.0000000000 0.0000000000 64.0717500000 1.0000000000 0.0000000000 0.0000000000 -64.0717500000 0.0000000000 0.0000000000 -1.0000000000 21.3572500000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 3 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 3 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id RR2 _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 15 _struct_site.details 'BINDING SITE FOR RESIDUE RR2 A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 DC A 1 ? DC A 1 . ? 8_544 ? 2 AC1 15 DG A 2 ? DG A 2 . ? 8_544 ? 3 AC1 15 DT A 3 ? DT A 3 . ? 8_544 ? 4 AC1 15 DT A 3 ? DT A 3 . ? 1_555 ? 5 AC1 15 DA A 4 ? DA A 4 . ? 8_544 ? 6 AC1 15 DA A 4 ? DA A 4 . ? 1_555 ? 7 AC1 15 DC A 5 ? DC A 5 . ? 1_555 ? 8 AC1 15 DG A 6 ? DG A 6 . ? 1_555 ? 9 AC1 15 DG A 6 ? DG A 6 . ? 13_545 ? 10 AC1 15 DC B 1 ? DC B 1 . ? 13_545 ? 11 AC1 15 DG B 2 ? DG B 2 . ? 1_555 ? 12 AC1 15 DT B 3 ? DT B 3 . ? 13_545 ? 13 AC1 15 DA B 4 ? DA B 4 . ? 1_555 ? 14 AC1 15 DC B 5 ? DC B 5 . ? 1_555 ? 15 AC1 15 DC B 5 ? DC B 5 . ? 8_544 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 3 ? ? "C1'" A DT 3 ? ? N1 A DT 3 ? ? 110.82 108.30 2.52 0.30 N 2 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 102.76 108.00 -5.24 0.70 N 3 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 97.15 102.40 -5.25 0.80 N 4 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.91 108.30 2.61 0.30 N 5 1 "O4'" B DC 1 ? ? "C4'" B DC 1 ? ? "C3'" B DC 1 ? ? 101.70 104.50 -2.80 0.40 N 6 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.53 108.30 4.23 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 RR2 CA1 C Y N 147 RR2 CA2 C Y N 148 RR2 CA3 C Y N 149 RR2 NA1 N Y N 150 RR2 CA4 C Y N 151 RR2 CA5 C Y N 152 RR2 CA6 C Y N 153 RR2 CA7 C Y N 154 RR2 CA8 C Y N 155 RR2 NA2 N Y N 156 RR2 CA9 C Y N 157 RR2 CA0 C Y N 158 RR2 CAA C Y N 159 RR2 CAB C Y N 160 RR2 CB1 C Y N 161 RR2 CB2 C Y N 162 RR2 CB3 C Y N 163 RR2 NB1 N Y N 164 RR2 CB4 C Y N 165 RR2 CB5 C Y N 166 RR2 CB6 C Y N 167 RR2 CB7 C Y N 168 RR2 CB8 C Y N 169 RR2 NB2 N Y N 170 RR2 CB9 C Y N 171 RR2 CB0 C Y N 172 RR2 CBA C Y N 173 RR2 CBB C Y N 174 RR2 CC1 C Y N 175 RR2 CC2 C Y N 176 RR2 CC3 C Y N 177 RR2 NC1 N Y N 178 RR2 CC4 C Y N 179 RR2 CC5 C Y N 180 RR2 CC6 C Y N 181 RR2 CC7 C Y N 182 RR2 CC8 C Y N 183 RR2 NC2 N Y N 184 RR2 CC9 C Y N 185 RR2 CC0 C Y N 186 RR2 CCA C Y N 187 RR2 CCB C Y N 188 RR2 CD1 C Y N 189 RR2 CD2 C Y N 190 RR2 CD3 C Y N 191 RR2 ND1 N Y N 192 RR2 CD4 C Y N 193 RR2 CD5 C Y N 194 RR2 CD6 C Y N 195 RR2 CD7 C Y N 196 RR2 CD8 C Y N 197 RR2 ND2 N Y N 198 RR2 CD9 C Y N 199 RR2 CD0 C Y N 200 RR2 CDA C Y N 201 RR2 CDB C Y N 202 RR2 RU1 RU N N 203 RR2 RU2 RU N N 204 RR2 C11 C Y N 205 RR2 C10 C Y N 206 RR2 C12 C Y N 207 RR2 C13 C Y N 208 RR2 C9B C Y N 209 RR2 C9A C Y N 210 RR2 N9 N Y N 211 RR2 N14 N Y N 212 RR2 C8C C Y N 213 RR2 C8D C Y N 214 RR2 C4A C Y N 215 RR2 N4 N Y N 216 RR2 C3 C Y N 217 RR2 C2 C Y N 218 RR2 C1 C Y N 219 RR2 C8B C Y N 220 RR2 C8A C Y N 221 RR2 C4B C Y N 222 RR2 C8 C Y N 223 RR2 C7 C Y N 224 RR2 C6 C Y N 225 RR2 N5 N Y N 226 RR2 C31 C Y N 227 RR2 C30 C Y N 228 RR2 C32 C Y N 229 RR2 C33 C Y N 230 RR2 C9D C Y N 231 RR2 C9C C Y N 232 RR2 N29 N Y N 233 RR2 N N Y N 234 RR2 C8G C Y N 235 RR2 C8H C Y N 236 RR2 C4C C Y N 237 RR2 N24 N Y N 238 RR2 C23 C Y N 239 RR2 C22 C Y N 240 RR2 C21 C Y N 241 RR2 C8F C Y N 242 RR2 C8E C Y N 243 RR2 C4D C Y N 244 RR2 C28 C Y N 245 RR2 C27 C Y N 246 RR2 C26 C Y N 247 RR2 N25 N Y N 248 RR2 H1 H N N 249 RR2 H2 H N N 250 RR2 H3 H N N 251 RR2 H4 H N N 252 RR2 H5 H N N 253 RR2 H6 H N N 254 RR2 H7 H N N 255 RR2 H8 H N N 256 RR2 H9 H N N 257 RR2 H10 H N N 258 RR2 H11 H N N 259 RR2 H12 H N N 260 RR2 H13 H N N 261 RR2 H14 H N N 262 RR2 H15 H N N 263 RR2 H16 H N N 264 RR2 H17 H N N 265 RR2 H18 H N N 266 RR2 H19 H N N 267 RR2 H20 H N N 268 RR2 H21 H N N 269 RR2 H22 H N N 270 RR2 H23 H N N 271 RR2 H24 H N N 272 RR2 H25 H N N 273 RR2 H26 H N N 274 RR2 H27 H N N 275 RR2 H28 H N N 276 RR2 H29 H N N 277 RR2 H30 H N N 278 RR2 H31 H N N 279 RR2 H32 H N N 280 RR2 H33 H N N 281 RR2 H34 H N N 282 RR2 H35 H N N 283 RR2 H36 H N N 284 RR2 H37 H N N 285 RR2 H38 H N N 286 RR2 H39 H N N 287 RR2 H40 H N N 288 RR2 H41 H N N 289 RR2 H42 H N N 290 RR2 H43 H N N 291 RR2 H44 H N N 292 RR2 H45 H N N 293 RR2 H46 H N N 294 RR2 H47 H N N 295 RR2 H48 H N N 296 RR2 H49 H N N 297 RR2 H50 H N N 298 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 RR2 CA1 NA1 doub Y N 152 RR2 CA1 H1 sing N N 153 RR2 CA2 CA1 sing Y N 154 RR2 CA2 H2 sing N N 155 RR2 CA3 CA2 doub Y N 156 RR2 CA3 CA5 sing Y N 157 RR2 CA3 H3 sing N N 158 RR2 NA1 RU1 sing N N 159 RR2 CA4 NA1 sing Y N 160 RR2 CA4 CA8 doub Y N 161 RR2 CA5 CA4 sing Y N 162 RR2 CA6 CA5 doub Y N 163 RR2 CA6 CA7 sing Y N 164 RR2 CA6 H4 sing N N 165 RR2 CA7 CA9 doub Y N 166 RR2 CA7 H5 sing N N 167 RR2 CA8 NA2 sing Y N 168 RR2 NA2 CAB doub Y N 169 RR2 CA9 CA8 sing Y N 170 RR2 CA9 CA0 sing Y N 171 RR2 CA0 CAA doub Y N 172 RR2 CA0 H6 sing N N 173 RR2 CAA CAB sing Y N 174 RR2 CAA H7 sing N N 175 RR2 CAB H8 sing N N 176 RR2 CB1 NB1 doub Y N 177 RR2 CB1 CB2 sing Y N 178 RR2 CB1 H9 sing N N 179 RR2 CB2 CB3 doub Y N 180 RR2 CB2 H10 sing N N 181 RR2 CB3 CB5 sing Y N 182 RR2 CB3 H11 sing N N 183 RR2 NB1 CB4 sing Y N 184 RR2 CB4 CB8 doub Y N 185 RR2 CB4 CB5 sing Y N 186 RR2 CB5 CB6 doub Y N 187 RR2 CB6 CB7 sing Y N 188 RR2 CB6 H12 sing N N 189 RR2 CB7 H13 sing N N 190 RR2 CB8 CB9 sing Y N 191 RR2 NB2 CBB doub Y N 192 RR2 NB2 CB8 sing Y N 193 RR2 CB9 CB0 sing Y N 194 RR2 CB9 CB7 doub Y N 195 RR2 CB0 H14 sing N N 196 RR2 CBA CB0 doub Y N 197 RR2 CBA H15 sing N N 198 RR2 CBB CBA sing Y N 199 RR2 CBB H16 sing N N 200 RR2 CC1 NC1 doub Y N 201 RR2 CC1 H17 sing N N 202 RR2 CC2 CC3 doub Y N 203 RR2 CC2 CC1 sing Y N 204 RR2 CC2 H18 sing N N 205 RR2 CC3 CC5 sing Y N 206 RR2 CC3 H19 sing N N 207 RR2 NC1 CC4 sing Y N 208 RR2 NC1 RU2 sing N N 209 RR2 CC4 CC8 doub Y N 210 RR2 CC5 CC6 doub Y N 211 RR2 CC5 CC4 sing Y N 212 RR2 CC6 CC7 sing Y N 213 RR2 CC6 H20 sing N N 214 RR2 CC7 CC9 doub Y N 215 RR2 CC7 H21 sing N N 216 RR2 CC8 CC9 sing Y N 217 RR2 CC8 NC2 sing Y N 218 RR2 NC2 CCB doub Y N 219 RR2 CC9 CC0 sing Y N 220 RR2 CC0 CCA doub Y N 221 RR2 CC0 H22 sing N N 222 RR2 CCA H23 sing N N 223 RR2 CCB CCA sing Y N 224 RR2 CCB H24 sing N N 225 RR2 CD1 ND1 doub Y N 226 RR2 CD1 H25 sing N N 227 RR2 CD2 CD1 sing Y N 228 RR2 CD2 H26 sing N N 229 RR2 CD3 CD2 doub Y N 230 RR2 CD3 CD5 sing Y N 231 RR2 CD3 H27 sing N N 232 RR2 ND1 RU2 sing N N 233 RR2 CD4 ND1 sing Y N 234 RR2 CD4 CD8 doub Y N 235 RR2 CD5 CD4 sing Y N 236 RR2 CD6 CD5 doub Y N 237 RR2 CD6 CD7 sing Y N 238 RR2 CD6 H28 sing N N 239 RR2 CD7 CD9 doub Y N 240 RR2 CD7 H29 sing N N 241 RR2 CD8 ND2 sing Y N 242 RR2 ND2 CDB doub Y N 243 RR2 CD9 CD8 sing Y N 244 RR2 CD9 CD0 sing Y N 245 RR2 CD0 CDA doub Y N 246 RR2 CD0 H30 sing N N 247 RR2 CDA CDB sing Y N 248 RR2 CDA H31 sing N N 249 RR2 CDB H32 sing N N 250 RR2 RU1 NA2 sing N N 251 RR2 RU1 NB1 sing N N 252 RR2 RU1 NB2 sing N N 253 RR2 RU2 ND2 sing N N 254 RR2 RU2 N4 sing N N 255 RR2 RU2 NC2 sing N N 256 RR2 RU2 N5 sing N N 257 RR2 C11 C31 sing N N 258 RR2 C10 C11 sing Y N 259 RR2 C10 H33 sing N N 260 RR2 C12 C11 doub Y N 261 RR2 C12 H34 sing N N 262 RR2 C13 C12 sing Y N 263 RR2 C13 H35 sing N N 264 RR2 C9B C13 doub Y N 265 RR2 C9B C9A sing Y N 266 RR2 C9A C10 doub Y N 267 RR2 N9 C9A sing Y N 268 RR2 N14 C9B sing Y N 269 RR2 C8C N14 doub Y N 270 RR2 C8C C8B sing Y N 271 RR2 C8D C8C sing Y N 272 RR2 C4A C8D sing Y N 273 RR2 C4A C4B sing Y N 274 RR2 N4 C4A doub Y N 275 RR2 C3 C2 doub Y N 276 RR2 C3 N4 sing Y N 277 RR2 C3 H36 sing N N 278 RR2 C2 C1 sing Y N 279 RR2 C2 H37 sing N N 280 RR2 C1 C8D doub Y N 281 RR2 C1 H38 sing N N 282 RR2 C8B N9 doub Y N 283 RR2 C8A C8B sing Y N 284 RR2 C8A C8 doub Y N 285 RR2 C4B C8A sing Y N 286 RR2 C8 H39 sing N N 287 RR2 C7 C8 sing Y N 288 RR2 C7 H40 sing N N 289 RR2 C6 C7 doub Y N 290 RR2 C6 H41 sing N N 291 RR2 N5 C4B doub Y N 292 RR2 N5 C6 sing Y N 293 RR2 C31 C32 doub Y N 294 RR2 C31 C30 sing Y N 295 RR2 C30 C9C doub Y N 296 RR2 C30 H42 sing N N 297 RR2 C32 C33 sing Y N 298 RR2 C32 H43 sing N N 299 RR2 C33 C9D doub Y N 300 RR2 C33 H44 sing N N 301 RR2 C9D N sing Y N 302 RR2 C9C C9D sing Y N 303 RR2 C9C N29 sing Y N 304 RR2 N29 C8F doub Y N 305 RR2 N C8G doub Y N 306 RR2 C8G C8H sing Y N 307 RR2 C8H C21 doub Y N 308 RR2 C8H C4C sing Y N 309 RR2 C4C N24 doub Y N 310 RR2 N24 C23 sing Y N 311 RR2 N24 RU1 sing N N 312 RR2 C23 H45 sing N N 313 RR2 C22 C23 doub Y N 314 RR2 C22 H46 sing N N 315 RR2 C21 C22 sing Y N 316 RR2 C21 H47 sing N N 317 RR2 C8F C8G sing Y N 318 RR2 C8F C8E sing Y N 319 RR2 C8E C4D sing Y N 320 RR2 C4D C4C sing Y N 321 RR2 C4D N25 doub Y N 322 RR2 C28 C8E doub Y N 323 RR2 C28 C27 sing Y N 324 RR2 C28 H48 sing N N 325 RR2 C27 C26 doub Y N 326 RR2 C26 N25 sing Y N 327 RR2 N25 RU1 sing N N 328 RR2 C27 H49 sing N N 329 RR2 C26 H50 sing N N 330 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4GQJ 'double helix' 4GQJ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 B DC 5 1_555 0.133 0.052 -0.676 -16.754 16.736 1.718 1 A_DG2:DC5_B A 2 ? B 5 ? 19 1 1 A DT 3 1_555 B DA 4 1_555 -0.018 -0.031 -0.226 7.213 8.564 2.185 2 A_DT3:DA4_B A 3 ? B 4 ? 20 1 1 A DC 5 1_555 B DG 2 1_555 -0.010 -0.137 -0.237 0.161 20.340 -0.325 3 A_DC5:DG2_B A 5 ? B 2 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.196 0.100 0.442 33.760 7.144 -0.517 4 A_DG6:DC1_B A 6 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 B DC 5 1_555 A DT 3 1_555 B DA 4 1_555 -0.411 -0.046 2.793 -2.856 4.808 21.452 -1.688 0.138 2.747 12.642 7.510 22.160 1 AA_DG2DT3:DA4DC5_BB A 2 ? B 5 ? A 3 ? B 4 ? 1 A DT 3 1_555 B DA 4 1_555 A DC 5 1_555 B DG 2 1_555 -0.247 2.501 6.754 -9.058 4.825 59.989 1.983 -0.673 6.888 4.788 8.988 60.780 2 AA_DT3DC5:DG2DA4_BB A 3 ? B 4 ? A 5 ? B 2 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 -0.462 0.722 2.806 -3.737 -4.751 32.528 1.952 0.274 2.712 -8.391 6.600 33.070 3 AA_DC5DG6:DC1DG2_BB A 5 ? B 2 ? A 6 ? B 1 ? # _atom_sites.entry_id 4GQJ _atom_sites.fract_transf_matrix[1][1] 0.011706 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011706 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011706 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P RU # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? -7.479 -48.795 -1.803 1.00 60.70 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? -7.850 -49.483 -0.595 1.00 46.04 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? -6.863 -50.607 -0.415 1.00 43.57 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? -6.736 -51.308 -1.680 1.00 48.59 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? -5.460 -50.114 -0.120 1.00 54.19 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? -4.801 -51.099 0.622 1.00 31.50 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? -4.847 -49.941 -1.506 1.00 44.44 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? -5.436 -51.152 -2.208 1.00 34.64 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? -5.559 -50.959 -3.656 1.00 43.66 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? -4.597 -51.518 -4.502 1.00 50.97 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? -3.660 -52.170 -4.018 1.00 49.63 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? -4.722 -51.328 -5.839 1.00 58.94 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? -5.747 -50.621 -6.324 1.00 59.51 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? -5.820 -50.470 -7.653 1.00 66.10 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? -6.737 -50.042 -5.470 1.00 45.89 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? -6.603 -50.233 -4.152 1.00 46.85 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? -4.487 -50.852 2.170 1.00 48.93 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? -5.785 -50.707 2.880 1.00 39.43 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? -3.453 -49.789 2.257 1.00 40.56 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? -3.865 -52.240 2.640 1.00 43.10 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? -4.662 -53.393 2.444 1.00 42.24 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? -3.885 -54.615 2.868 1.00 38.61 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? -2.699 -54.707 2.046 1.00 41.22 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? -3.398 -54.572 4.306 1.00 35.77 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? -3.451 -55.891 4.808 1.00 36.15 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? -1.978 -54.024 4.175 1.00 34.27 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? -1.538 -54.623 2.843 1.00 33.57 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? -0.531 -53.861 2.097 1.00 34.13 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? -0.270 -52.510 2.135 1.00 33.56 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? 0.701 -52.139 1.336 1.00 29.58 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? 1.109 -53.323 0.726 1.00 29.58 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? 2.123 -53.563 -0.233 1.00 34.88 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? 2.896 -52.739 -0.750 1.00 38.62 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? 2.195 -54.912 -0.587 1.00 32.44 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? 1.394 -55.905 -0.068 1.00 32.62 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? 1.599 -57.157 -0.510 1.00 33.31 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? 0.451 -55.690 0.835 1.00 31.52 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? 0.361 -54.385 1.183 1.00 33.91 ? 2 DG A C4 1 ATOM 39 P P . DT A 1 3 ? -3.175 -56.177 6.363 1.00 65.06 ? 3 DT A P 1 ATOM 40 O OP1 . DT A 1 3 ? -4.389 -56.822 6.922 1.00 33.92 ? 3 DT A OP1 1 ATOM 41 O OP2 . DT A 1 3 ? -2.545 -54.960 6.954 1.00 32.59 ? 3 DT A OP2 1 ATOM 42 O "O5'" . DT A 1 3 ? -2.048 -57.299 6.334 1.00 52.01 ? 3 DT A "O5'" 1 ATOM 43 C "C5'" . DT A 1 3 ? -2.394 -58.533 5.727 1.00 41.81 ? 3 DT A "C5'" 1 ATOM 44 C "C4'" . DT A 1 3 ? -1.135 -59.148 5.173 1.00 24.55 ? 3 DT A "C4'" 1 ATOM 45 O "O4'" . DT A 1 3 ? -0.470 -58.160 4.350 1.00 30.83 ? 3 DT A "O4'" 1 ATOM 46 C "C3'" . DT A 1 3 ? -0.156 -59.476 6.278 1.00 25.32 ? 3 DT A "C3'" 1 ATOM 47 O "O3'" . DT A 1 3 ? 0.302 -60.800 6.105 1.00 30.96 ? 3 DT A "O3'" 1 ATOM 48 C "C2'" . DT A 1 3 ? 0.952 -58.444 6.089 1.00 23.31 ? 3 DT A "C2'" 1 ATOM 49 C "C1'" . DT A 1 3 ? 0.905 -58.280 4.588 1.00 20.59 ? 3 DT A "C1'" 1 ATOM 50 N N1 . DT A 1 3 ? 1.639 -57.093 4.064 1.00 30.07 ? 3 DT A N1 1 ATOM 51 C C2 . DT A 1 3 ? 2.520 -57.280 3.021 1.00 37.70 ? 3 DT A C2 1 ATOM 52 O O2 . DT A 1 3 ? 2.723 -58.360 2.501 1.00 43.28 ? 3 DT A O2 1 ATOM 53 N N3 . DT A 1 3 ? 3.170 -56.158 2.593 1.00 32.58 ? 3 DT A N3 1 ATOM 54 C C4 . DT A 1 3 ? 3.038 -54.885 3.093 1.00 33.50 ? 3 DT A C4 1 ATOM 55 O O4 . DT A 1 3 ? 3.672 -53.938 2.633 1.00 30.88 ? 3 DT A O4 1 ATOM 56 C C5 . DT A 1 3 ? 2.106 -54.753 4.183 1.00 34.25 ? 3 DT A C5 1 ATOM 57 C C7 . DT A 1 3 ? 1.885 -53.402 4.796 1.00 16.84 ? 3 DT A C7 1 ATOM 58 C C6 . DT A 1 3 ? 1.458 -55.846 4.617 1.00 38.80 ? 3 DT A C6 1 ATOM 59 P P . DA A 1 4 ? -0.483 -62.021 6.791 1.00 30.53 ? 4 DA A P 1 ATOM 60 O OP1 . DA A 1 4 ? -1.928 -61.733 6.715 1.00 39.11 ? 4 DA A OP1 1 ATOM 61 O OP2 . DA A 1 4 ? 0.124 -62.281 8.124 1.00 27.60 ? 4 DA A OP2 1 ATOM 62 O "O5'" . DA A 1 4 ? -0.151 -63.239 5.830 1.00 29.20 ? 4 DA A "O5'" 1 ATOM 63 C "C5'" . DA A 1 4 ? -0.388 -63.131 4.436 1.00 29.14 ? 4 DA A "C5'" 1 ATOM 64 C "C4'" . DA A 1 4 ? -0.523 -64.544 3.891 1.00 37.96 ? 4 DA A "C4'" 1 ATOM 65 O "O4'" . DA A 1 4 ? -1.142 -64.524 2.584 1.00 35.59 ? 4 DA A "O4'" 1 ATOM 66 C "C3'" . DA A 1 4 ? 0.775 -65.317 3.733 1.00 32.24 ? 4 DA A "C3'" 1 ATOM 67 O "O3'" . DA A 1 4 ? 0.550 -66.674 4.113 1.00 25.76 ? 4 DA A "O3'" 1 ATOM 68 C "C2'" . DA A 1 4 ? 1.084 -65.152 2.243 1.00 34.15 ? 4 DA A "C2'" 1 ATOM 69 C "C1'" . DA A 1 4 ? -0.300 -65.073 1.604 1.00 33.08 ? 4 DA A "C1'" 1 ATOM 70 N N9 . DA A 1 4 ? -0.427 -64.130 0.507 1.00 37.27 ? 4 DA A N9 1 ATOM 71 C C8 . DA A 1 4 ? -1.081 -64.289 -0.682 1.00 44.07 ? 4 DA A C8 1 ATOM 72 N N7 . DA A 1 4 ? -1.033 -63.228 -1.461 1.00 35.50 ? 4 DA A N7 1 ATOM 73 C C5 . DA A 1 4 ? -0.296 -62.310 -0.731 1.00 35.47 ? 4 DA A C5 1 ATOM 74 C C6 . DA A 1 4 ? 0.122 -60.984 -0.995 1.00 43.08 ? 4 DA A C6 1 ATOM 75 N N6 . DA A 1 4 ? -0.153 -60.309 -2.121 1.00 43.58 ? 4 DA A N6 1 ATOM 76 N N1 . DA A 1 4 ? 0.843 -60.360 -0.045 1.00 30.78 ? 4 DA A N1 1 ATOM 77 C C2 . DA A 1 4 ? 1.117 -61.032 1.083 1.00 43.36 ? 4 DA A C2 1 ATOM 78 N N3 . DA A 1 4 ? 0.783 -62.272 1.452 1.00 35.03 ? 4 DA A N3 1 ATOM 79 C C4 . DA A 1 4 ? 0.072 -62.856 0.486 1.00 35.38 ? 4 DA A C4 1 ATOM 80 P P . DC A 1 5 ? 1.150 -67.244 5.497 1.00 46.60 ? 5 DC A P 1 ATOM 81 O OP1 . DC A 1 5 ? 1.423 -68.687 5.314 1.00 49.38 ? 5 DC A OP1 1 ATOM 82 O OP2 . DC A 1 5 ? 0.274 -66.794 6.605 1.00 42.59 ? 5 DC A OP2 1 ATOM 83 O "O5'" . DC A 1 5 ? 2.531 -66.459 5.660 1.00 40.46 ? 5 DC A "O5'" 1 ATOM 84 C "C5'" . DC A 1 5 ? 3.647 -66.686 4.803 1.00 37.93 ? 5 DC A "C5'" 1 ATOM 85 C "C4'" . DC A 1 5 ? 4.938 -66.301 5.512 1.00 29.80 ? 5 DC A "C4'" 1 ATOM 86 O "O4'" . DC A 1 5 ? 5.087 -64.856 5.569 1.00 27.11 ? 5 DC A "O4'" 1 ATOM 87 C "C3'" . DC A 1 5 ? 5.031 -66.766 6.962 1.00 40.74 ? 5 DC A "C3'" 1 ATOM 88 O "O3'" . DC A 1 5 ? 6.357 -67.140 7.248 1.00 51.64 ? 5 DC A "O3'" 1 ATOM 89 C "C2'" . DC A 1 5 ? 4.712 -65.491 7.725 1.00 42.78 ? 5 DC A "C2'" 1 ATOM 90 C "C1'" . DC A 1 5 ? 5.536 -64.546 6.867 1.00 26.07 ? 5 DC A "C1'" 1 ATOM 91 N N1 . DC A 1 5 ? 5.298 -63.123 7.181 1.00 25.28 ? 5 DC A N1 1 ATOM 92 C C2 . DC A 1 5 ? 6.258 -62.156 6.874 1.00 34.73 ? 5 DC A C2 1 ATOM 93 O O2 . DC A 1 5 ? 7.317 -62.480 6.321 1.00 38.18 ? 5 DC A O2 1 ATOM 94 N N3 . DC A 1 5 ? 6.000 -60.871 7.195 1.00 36.20 ? 5 DC A N3 1 ATOM 95 C C4 . DC A 1 5 ? 4.858 -60.545 7.794 1.00 28.07 ? 5 DC A C4 1 ATOM 96 N N4 . DC A 1 5 ? 4.651 -59.256 8.087 1.00 31.03 ? 5 DC A N4 1 ATOM 97 C C5 . DC A 1 5 ? 3.876 -61.520 8.119 1.00 28.59 ? 5 DC A C5 1 ATOM 98 C C6 . DC A 1 5 ? 4.137 -62.785 7.801 1.00 31.66 ? 5 DC A C6 1 ATOM 99 P P . DG A 1 6 ? 6.729 -68.682 7.483 1.00 53.97 ? 6 DG A P 1 ATOM 100 O OP1 . DG A 1 6 ? 6.072 -69.468 6.411 1.00 35.57 ? 6 DG A OP1 1 ATOM 101 O OP2 . DG A 1 6 ? 6.494 -68.997 8.919 1.00 24.32 ? 6 DG A OP2 1 ATOM 102 O "O5'" . DG A 1 6 ? 8.303 -68.722 7.218 1.00 37.39 ? 6 DG A "O5'" 1 ATOM 103 C "C5'" . DG A 1 6 ? 8.819 -68.325 5.941 1.00 32.55 ? 6 DG A "C5'" 1 ATOM 104 C "C4'" . DG A 1 6 ? 10.199 -67.695 6.085 1.00 34.26 ? 6 DG A "C4'" 1 ATOM 105 O "O4'" . DG A 1 6 ? 10.068 -66.292 6.424 1.00 40.81 ? 6 DG A "O4'" 1 ATOM 106 C "C3'" . DG A 1 6 ? 11.057 -68.264 7.206 1.00 40.47 ? 6 DG A "C3'" 1 ATOM 107 O "O3'" . DG A 1 6 ? 12.422 -68.042 6.906 1.00 39.40 ? 6 DG A "O3'" 1 ATOM 108 C "C2'" . DG A 1 6 ? 10.605 -67.445 8.412 1.00 31.91 ? 6 DG A "C2'" 1 ATOM 109 C "C1'" . DG A 1 6 ? 10.496 -66.077 7.757 1.00 39.01 ? 6 DG A "C1'" 1 ATOM 110 N N9 . DG A 1 6 ? 9.561 -65.187 8.431 1.00 39.99 ? 6 DG A N9 1 ATOM 111 C C8 . DG A 1 6 ? 8.460 -65.537 9.175 1.00 46.83 ? 6 DG A C8 1 ATOM 112 N N7 . DG A 1 6 ? 7.823 -64.502 9.656 1.00 47.19 ? 6 DG A N7 1 ATOM 113 C C5 . DG A 1 6 ? 8.549 -63.403 9.203 1.00 36.34 ? 6 DG A C5 1 ATOM 114 C C6 . DG A 1 6 ? 8.349 -62.014 9.405 1.00 38.50 ? 6 DG A C6 1 ATOM 115 O O6 . DG A 1 6 ? 7.452 -61.445 10.047 1.00 42.28 ? 6 DG A O6 1 ATOM 116 N N1 . DG A 1 6 ? 9.325 -61.256 8.768 1.00 34.85 ? 6 DG A N1 1 ATOM 117 C C2 . DG A 1 6 ? 10.365 -61.765 8.029 1.00 38.82 ? 6 DG A C2 1 ATOM 118 N N2 . DG A 1 6 ? 11.217 -60.873 7.488 1.00 34.45 ? 6 DG A N2 1 ATOM 119 N N3 . DG A 1 6 ? 10.558 -63.062 7.835 1.00 33.77 ? 6 DG A N3 1 ATOM 120 C C4 . DG A 1 6 ? 9.619 -63.814 8.448 1.00 30.90 ? 6 DG A C4 1 ATOM 121 O "O5'" . DC B 1 1 ? 12.813 -52.994 12.427 1.00 45.49 ? 1 DC B "O5'" 1 ATOM 122 C "C5'" . DC B 1 1 ? 13.003 -54.385 12.180 1.00 32.25 ? 1 DC B "C5'" 1 ATOM 123 C "C4'" . DC B 1 1 ? 13.930 -54.689 11.010 1.00 28.93 ? 1 DC B "C4'" 1 ATOM 124 O "O4'" . DC B 1 1 ? 13.569 -56.028 10.619 1.00 41.13 ? 1 DC B "O4'" 1 ATOM 125 C "C3'" . DC B 1 1 ? 13.786 -53.930 9.688 1.00 30.13 ? 1 DC B "C3'" 1 ATOM 126 O "O3'" . DC B 1 1 ? 14.837 -54.297 8.771 1.00 26.81 ? 1 DC B "O3'" 1 ATOM 127 C "C2'" . DC B 1 1 ? 12.475 -54.499 9.174 1.00 31.40 ? 1 DC B "C2'" 1 ATOM 128 C "C1'" . DC B 1 1 ? 12.679 -55.968 9.515 1.00 32.82 ? 1 DC B "C1'" 1 ATOM 129 N N1 . DC B 1 1 ? 11.442 -56.680 9.899 1.00 25.15 ? 1 DC B N1 1 ATOM 130 C C2 . DC B 1 1 ? 11.049 -57.801 9.161 1.00 35.81 ? 1 DC B C2 1 ATOM 131 O O2 . DC B 1 1 ? 11.748 -58.168 8.206 1.00 46.19 ? 1 DC B O2 1 ATOM 132 N N3 . DC B 1 1 ? 9.917 -58.455 9.518 1.00 38.63 ? 1 DC B N3 1 ATOM 133 C C4 . DC B 1 1 ? 9.194 -58.031 10.555 1.00 31.80 ? 1 DC B C4 1 ATOM 134 N N4 . DC B 1 1 ? 8.089 -58.712 10.859 1.00 28.48 ? 1 DC B N4 1 ATOM 135 C C5 . DC B 1 1 ? 9.579 -56.889 11.319 1.00 35.75 ? 1 DC B C5 1 ATOM 136 C C6 . DC B 1 1 ? 10.704 -56.253 10.963 1.00 33.34 ? 1 DC B C6 1 ATOM 137 P P . DG B 1 2 ? 15.068 -53.461 7.411 1.00 49.57 ? 2 DG B P 1 ATOM 138 O OP1 . DG B 1 2 ? 16.501 -53.546 7.064 1.00 37.85 ? 2 DG B OP1 1 ATOM 139 O OP2 . DG B 1 2 ? 14.378 -52.154 7.542 1.00 40.03 ? 2 DG B OP2 1 ATOM 140 O "O5'" . DG B 1 2 ? 14.275 -54.295 6.317 1.00 39.99 ? 2 DG B "O5'" 1 ATOM 141 C "C5'" . DG B 1 2 ? 14.809 -55.492 5.835 1.00 36.40 ? 2 DG B "C5'" 1 ATOM 142 C "C4'" . DG B 1 2 ? 13.918 -55.920 4.695 1.00 43.76 ? 2 DG B "C4'" 1 ATOM 143 O "O4'" . DG B 1 2 ? 12.711 -56.536 5.209 1.00 46.87 ? 2 DG B "O4'" 1 ATOM 144 C "C3'" . DG B 1 2 ? 13.442 -54.770 3.820 1.00 41.58 ? 2 DG B "C3'" 1 ATOM 145 O "O3'" . DG B 1 2 ? 13.342 -55.244 2.511 1.00 50.52 ? 2 DG B "O3'" 1 ATOM 146 C "C2'" . DG B 1 2 ? 12.040 -54.501 4.339 1.00 39.42 ? 2 DG B "C2'" 1 ATOM 147 C "C1'" . DG B 1 2 ? 11.589 -55.928 4.599 1.00 35.63 ? 2 DG B "C1'" 1 ATOM 148 N N9 . DG B 1 2 ? 10.498 -56.008 5.552 1.00 36.31 ? 2 DG B N9 1 ATOM 149 C C8 . DG B 1 2 ? 10.097 -55.025 6.417 1.00 37.57 ? 2 DG B C8 1 ATOM 150 N N7 . DG B 1 2 ? 9.094 -55.373 7.168 1.00 34.54 ? 2 DG B N7 1 ATOM 151 C C5 . DG B 1 2 ? 8.822 -56.675 6.783 1.00 30.37 ? 2 DG B C5 1 ATOM 152 C C6 . DG B 1 2 ? 7.835 -57.567 7.254 1.00 39.54 ? 2 DG B C6 1 ATOM 153 O O6 . DG B 1 2 ? 6.986 -57.377 8.137 1.00 41.16 ? 2 DG B O6 1 ATOM 154 N N1 . DG B 1 2 ? 7.895 -58.792 6.595 1.00 43.70 ? 2 DG B N1 1 ATOM 155 C C2 . DG B 1 2 ? 8.795 -59.112 5.607 1.00 42.72 ? 2 DG B C2 1 ATOM 156 N N2 . DG B 1 2 ? 8.691 -60.350 5.098 1.00 40.30 ? 2 DG B N2 1 ATOM 157 N N3 . DG B 1 2 ? 9.728 -58.278 5.156 1.00 41.05 ? 2 DG B N3 1 ATOM 158 C C4 . DG B 1 2 ? 9.678 -57.083 5.789 1.00 36.10 ? 2 DG B C4 1 ATOM 159 P P . DT B 1 3 ? 13.908 -54.372 1.297 1.00 63.11 ? 3 DT B P 1 ATOM 160 O OP1 . DT B 1 3 ? 14.953 -53.469 1.832 1.00 53.45 ? 3 DT B OP1 1 ATOM 161 O OP2 . DT B 1 3 ? 12.749 -53.818 0.552 1.00 47.74 ? 3 DT B OP2 1 ATOM 162 O "O5'" . DT B 1 3 ? 14.607 -55.459 0.370 1.00 42.45 ? 3 DT B "O5'" 1 ATOM 163 C "C5'" . DT B 1 3 ? 14.653 -55.203 -1.014 1.00 53.74 ? 3 DT B "C5'" 1 ATOM 164 C "C4'" . DT B 1 3 ? 15.056 -56.466 -1.743 1.00 59.41 ? 3 DT B "C4'" 1 ATOM 165 O "O4'" . DT B 1 3 ? 16.289 -56.970 -1.176 1.00 71.87 ? 3 DT B "O4'" 1 ATOM 166 C "C3'" . DT B 1 3 ? 14.041 -57.601 -1.655 1.00 60.12 ? 3 DT B "C3'" 1 ATOM 167 O "O3'" . DT B 1 3 ? 13.794 -58.081 -2.970 1.00 53.10 ? 3 DT B "O3'" 1 ATOM 168 C "C2'" . DT B 1 3 ? 14.716 -58.652 -0.773 1.00 53.79 ? 3 DT B "C2'" 1 ATOM 169 C "C1'" . DT B 1 3 ? 16.193 -58.373 -1.024 1.00 58.01 ? 3 DT B "C1'" 1 ATOM 170 N N1 . DT B 1 3 ? 17.138 -58.759 0.073 1.00 53.89 ? 3 DT B N1 1 ATOM 171 C C2 . DT B 1 3 ? 17.882 -59.918 -0.032 1.00 48.59 ? 3 DT B C2 1 ATOM 172 O O2 . DT B 1 3 ? 17.813 -60.694 -0.972 1.00 59.31 ? 3 DT B O2 1 ATOM 173 N N3 . DT B 1 3 ? 18.717 -60.148 1.028 1.00 47.66 ? 3 DT B N3 1 ATOM 174 C C4 . DT B 1 3 ? 18.887 -59.350 2.147 1.00 61.11 ? 3 DT B C4 1 ATOM 175 O O4 . DT B 1 3 ? 19.673 -59.656 3.041 1.00 55.84 ? 3 DT B O4 1 ATOM 176 C C5 . DT B 1 3 ? 18.081 -58.150 2.188 1.00 47.88 ? 3 DT B C5 1 ATOM 177 C C7 . DT B 1 3 ? 18.168 -57.198 3.347 1.00 46.81 ? 3 DT B C7 1 ATOM 178 C C6 . DT B 1 3 ? 17.261 -57.916 1.160 1.00 47.23 ? 3 DT B C6 1 ATOM 179 P P . DA B 1 4 ? 12.520 -57.557 -3.797 1.00 66.23 ? 4 DA B P 1 ATOM 180 O OP1 . DA B 1 4 ? 12.534 -58.219 -5.123 1.00 58.55 ? 4 DA B OP1 1 ATOM 181 O OP2 . DA B 1 4 ? 12.485 -56.073 -3.700 1.00 54.70 ? 4 DA B OP2 1 ATOM 182 O "O5'" . DA B 1 4 ? 11.289 -58.155 -2.983 1.00 58.41 ? 4 DA B "O5'" 1 ATOM 183 C "C5'" . DA B 1 4 ? 11.327 -59.525 -2.608 1.00 50.78 ? 4 DA B "C5'" 1 ATOM 184 C "C4'" . DA B 1 4 ? 10.015 -60.181 -2.976 1.00 52.68 ? 4 DA B "C4'" 1 ATOM 185 O "O4'" . DA B 1 4 ? 8.946 -59.610 -2.189 1.00 54.68 ? 4 DA B "O4'" 1 ATOM 186 C "C3'" . DA B 1 4 ? 9.576 -59.930 -4.404 1.00 55.34 ? 4 DA B "C3'" 1 ATOM 187 O "O3'" . DA B 1 4 ? 8.630 -60.913 -4.719 1.00 51.28 ? 4 DA B "O3'" 1 ATOM 188 C "C2'" . DA B 1 4 ? 8.914 -58.562 -4.312 1.00 46.89 ? 4 DA B "C2'" 1 ATOM 189 C "C1'" . DA B 1 4 ? 8.156 -58.765 -3.004 1.00 49.09 ? 4 DA B "C1'" 1 ATOM 190 N N9 . DA B 1 4 ? 7.892 -57.554 -2.244 1.00 40.82 ? 4 DA B N9 1 ATOM 191 C C8 . DA B 1 4 ? 8.558 -56.359 -2.283 1.00 50.27 ? 4 DA B C8 1 ATOM 192 N N7 . DA B 1 4 ? 8.062 -55.458 -1.464 1.00 44.90 ? 4 DA B N7 1 ATOM 193 C C5 . DA B 1 4 ? 7.008 -56.123 -0.852 1.00 37.90 ? 4 DA B C5 1 ATOM 194 C C6 . DA B 1 4 ? 6.071 -55.735 0.120 1.00 32.94 ? 4 DA B C6 1 ATOM 195 N N6 . DA B 1 4 ? 6.070 -54.519 0.657 1.00 39.61 ? 4 DA B N6 1 ATOM 196 N N1 . DA B 1 4 ? 5.144 -56.635 0.519 1.00 30.62 ? 4 DA B N1 1 ATOM 197 C C2 . DA B 1 4 ? 5.158 -57.850 -0.031 1.00 30.33 ? 4 DA B C2 1 ATOM 198 N N3 . DA B 1 4 ? 5.989 -58.334 -0.953 1.00 37.71 ? 4 DA B N3 1 ATOM 199 C C4 . DA B 1 4 ? 6.892 -57.412 -1.321 1.00 38.54 ? 4 DA B C4 1 ATOM 200 P P . DC B 1 5 ? 8.398 -61.329 -6.244 1.00 67.23 ? 5 DC B P 1 ATOM 201 O OP1 . DC B 1 5 ? 8.494 -62.807 -6.325 1.00 47.07 ? 5 DC B OP1 1 ATOM 202 O OP2 . DC B 1 5 ? 9.250 -60.443 -7.084 1.00 40.90 ? 5 DC B OP2 1 ATOM 203 O "O5'" . DC B 1 5 ? 6.878 -60.914 -6.517 1.00 65.77 ? 5 DC B "O5'" 1 ATOM 204 C "C5'" . DC B 1 5 ? 5.790 -61.698 -6.005 1.00 64.84 ? 5 DC B "C5'" 1 ATOM 205 C "C4'" . DC B 1 5 ? 4.563 -60.812 -5.933 1.00 58.20 ? 5 DC B "C4'" 1 ATOM 206 O "O4'" . DC B 1 5 ? 4.775 -59.814 -4.891 1.00 45.37 ? 5 DC B "O4'" 1 ATOM 207 C "C3'" A DC B 1 5 ? 4.530 -60.009 -7.230 0.35 48.42 ? 5 DC B "C3'" 1 ATOM 208 C "C3'" B DC B 1 5 ? 4.075 -60.113 -7.202 0.40 48.22 ? 5 DC B "C3'" 1 ATOM 209 C "C3'" C DC B 1 5 ? 4.206 -60.041 -7.216 0.25 48.05 ? 5 DC B "C3'" 1 ATOM 210 O "O3'" A DC B 1 5 ? 3.628 -60.578 -8.182 0.35 43.20 ? 5 DC B "O3'" 1 ATOM 211 O "O3'" B DC B 1 5 ? 2.689 -60.454 -7.484 0.40 46.38 ? 5 DC B "O3'" 1 ATOM 212 O "O3'" C DC B 1 5 ? 2.872 -60.334 -7.686 0.25 46.04 ? 5 DC B "O3'" 1 ATOM 213 C "C2'" A DC B 1 5 ? 4.173 -58.578 -6.817 0.35 47.35 ? 5 DC B "C2'" 1 ATOM 214 C "C2'" B DC B 1 5 ? 4.241 -58.638 -6.817 0.40 47.47 ? 5 DC B "C2'" 1 ATOM 215 C "C2'" C DC B 1 5 ? 4.327 -58.580 -6.792 0.25 47.27 ? 5 DC B "C2'" 1 ATOM 216 C "C1'" . DC B 1 5 ? 4.045 -58.684 -5.298 1.00 45.58 ? 5 DC B "C1'" 1 ATOM 217 N N1 . DC B 1 5 ? 4.444 -57.431 -4.542 1.00 43.80 ? 5 DC B N1 1 ATOM 218 C C2 . DC B 1 5 ? 3.746 -57.103 -3.369 1.00 39.83 ? 5 DC B C2 1 ATOM 219 O O2 . DC B 1 5 ? 2.852 -57.856 -2.973 1.00 49.20 ? 5 DC B O2 1 ATOM 220 N N3 . DC B 1 5 ? 4.052 -55.980 -2.682 1.00 32.52 ? 5 DC B N3 1 ATOM 221 C C4 . DC B 1 5 ? 5.021 -55.183 -3.125 1.00 40.98 ? 5 DC B C4 1 ATOM 222 N N4 . DC B 1 5 ? 5.284 -54.084 -2.404 1.00 34.82 ? 5 DC B N4 1 ATOM 223 C C5 . DC B 1 5 ? 5.746 -55.486 -4.320 1.00 34.53 ? 5 DC B C5 1 ATOM 224 C C6 . DC B 1 5 ? 5.427 -56.603 -4.994 1.00 43.17 ? 5 DC B C6 1 ATOM 225 P P A DG B 1 6 ? 4.022 -60.623 -9.740 0.35 41.35 ? 6 DG B P 1 ATOM 226 P P B DG B 1 6 ? 2.272 -61.962 -7.883 0.40 50.25 ? 6 DG B P 1 ATOM 227 P P C DG B 1 6 ? 2.290 -59.607 -9.003 0.25 44.62 ? 6 DG B P 1 ATOM 228 O OP1 A DG B 1 6 ? 3.020 -59.827 -10.486 0.35 38.72 ? 6 DG B OP1 1 ATOM 229 O OP1 B DG B 1 6 ? 2.921 -62.890 -6.929 0.40 45.24 ? 6 DG B OP1 1 ATOM 230 O OP1 C DG B 1 6 ? 1.168 -60.424 -9.516 0.25 37.58 ? 6 DG B OP1 1 ATOM 231 O OP2 A DG B 1 6 ? 4.281 -62.035 -10.101 0.35 34.58 ? 6 DG B OP2 1 ATOM 232 O OP2 B DG B 1 6 ? 2.503 -62.131 -9.334 0.40 34.54 ? 6 DG B OP2 1 ATOM 233 O OP2 C DG B 1 6 ? 3.433 -59.268 -9.882 0.25 36.34 ? 6 DG B OP2 1 ATOM 234 O "O5'" A DG B 1 6 ? 5.418 -59.841 -9.801 0.35 39.37 ? 6 DG B "O5'" 1 ATOM 235 O "O5'" B DG B 1 6 ? 0.696 -62.008 -7.580 0.40 31.91 ? 6 DG B "O5'" 1 ATOM 236 O "O5'" C DG B 1 6 ? 1.693 -58.229 -8.445 0.25 38.04 ? 6 DG B "O5'" 1 ATOM 237 C "C5'" A DG B 1 6 ? 6.172 -59.822 -11.010 0.35 28.42 ? 6 DG B "C5'" 1 ATOM 238 C "C5'" B DG B 1 6 ? 0.069 -63.247 -7.247 0.40 26.07 ? 6 DG B "C5'" 1 ATOM 239 C "C5'" C DG B 1 6 ? 1.123 -57.277 -9.337 0.25 24.90 ? 6 DG B "C5'" 1 HETATM 240 C CA1 . RR2 C 2 . ? 0.972 -46.167 11.292 1.00 42.20 ? 101 RR2 A CA1 1 HETATM 241 C CA2 . RR2 C 2 . ? 0.855 -45.355 10.160 1.00 36.48 ? 101 RR2 A CA2 1 HETATM 242 C CA3 . RR2 C 2 . ? 1.537 -44.146 10.076 1.00 27.76 ? 101 RR2 A CA3 1 HETATM 243 N NA1 . RR2 C 2 . ? 1.735 -45.831 12.335 1.00 19.65 ? 101 RR2 A NA1 1 HETATM 244 C CA4 . RR2 C 2 . ? 2.418 -44.684 12.317 1.00 16.43 ? 101 RR2 A CA4 1 HETATM 245 C CA5 . RR2 C 2 . ? 2.329 -43.778 11.150 1.00 30.95 ? 101 RR2 A CA5 1 HETATM 246 C CA6 . RR2 C 2 . ? 3.035 -42.583 11.136 1.00 33.37 ? 101 RR2 A CA6 1 HETATM 247 C CA7 . RR2 C 2 . ? 3.845 -42.192 12.203 1.00 27.51 ? 101 RR2 A CA7 1 HETATM 248 C CA8 . RR2 C 2 . ? 3.269 -44.277 13.443 1.00 24.20 ? 101 RR2 A CA8 1 HETATM 249 N NA2 . RR2 C 2 . ? 3.402 -45.038 14.550 1.00 32.15 ? 101 RR2 A NA2 1 HETATM 250 C CA9 . RR2 C 2 . ? 3.988 -42.982 13.338 1.00 32.72 ? 101 RR2 A CA9 1 HETATM 251 C CA0 . RR2 C 2 . ? 4.793 -42.585 14.400 1.00 33.77 ? 101 RR2 A CA0 1 HETATM 252 C CAA . RR2 C 2 . ? 4.879 -43.422 15.512 1.00 42.35 ? 101 RR2 A CAA 1 HETATM 253 C CAB . RR2 C 2 . ? 4.178 -44.632 15.562 1.00 39.89 ? 101 RR2 A CAB 1 HETATM 254 C CB1 . RR2 C 2 . ? -0.298 -44.738 14.702 1.00 44.50 ? 101 RR2 A CB1 1 HETATM 255 C CB2 . RR2 C 2 . ? -1.315 -44.410 15.600 1.00 40.08 ? 101 RR2 A CB2 1 HETATM 256 C CB3 . RR2 C 2 . ? -1.342 -44.960 16.878 1.00 35.36 ? 101 RR2 A CB3 1 HETATM 257 N NB1 . RR2 C 2 . ? 0.682 -45.586 15.032 1.00 29.96 ? 101 RR2 A NB1 1 HETATM 258 C CB4 . RR2 C 2 . ? 0.715 -46.142 16.248 1.00 16.78 ? 101 RR2 A CB4 1 HETATM 259 C CB5 . RR2 C 2 . ? -0.331 -45.837 17.245 1.00 35.52 ? 101 RR2 A CB5 1 HETATM 260 C CB6 . RR2 C 2 . ? -0.292 -46.421 18.511 1.00 38.35 ? 101 RR2 A CB6 1 HETATM 261 C CB7 . RR2 C 2 . ? 0.721 -47.307 18.877 1.00 32.39 ? 101 RR2 A CB7 1 HETATM 262 C CB8 . RR2 C 2 . ? 1.781 -47.064 16.634 1.00 18.99 ? 101 RR2 A CB8 1 HETATM 263 N NB2 . RR2 C 2 . ? 2.761 -47.378 15.786 1.00 22.88 ? 101 RR2 A NB2 1 HETATM 264 C CB9 . RR2 C 2 . ? 1.741 -47.641 17.992 1.00 29.91 ? 101 RR2 A CB9 1 HETATM 265 C CB0 . RR2 C 2 . ? 2.749 -48.513 18.354 1.00 30.61 ? 101 RR2 A CB0 1 HETATM 266 C CBA . RR2 C 2 . ? 3.738 -48.802 17.421 1.00 40.40 ? 101 RR2 A CBA 1 HETATM 267 C CBB . RR2 C 2 . ? 3.723 -48.227 16.151 1.00 45.05 ? 101 RR2 A CBB 1 HETATM 268 C CC1 . RR2 C 2 . ? 7.447 -63.306 -1.831 1.00 52.06 ? 101 RR2 A CC1 1 HETATM 269 C CC2 . RR2 C 2 . ? 8.490 -63.780 -2.608 1.00 45.30 ? 101 RR2 A CC2 1 HETATM 270 C CC3 . RR2 C 2 . ? 9.576 -64.400 -2.000 1.00 58.49 ? 101 RR2 A CC3 1 HETATM 271 N NC1 . RR2 C 2 . ? 7.449 -63.425 -0.500 1.00 37.65 ? 101 RR2 A NC1 1 HETATM 272 C CC4 . RR2 C 2 . ? 8.465 -64.017 0.148 1.00 46.96 ? 101 RR2 A CC4 1 HETATM 273 C CC5 . RR2 C 2 . ? 9.607 -64.540 -0.623 1.00 48.00 ? 101 RR2 A CC5 1 HETATM 274 C CC6 . RR2 C 2 . ? 10.672 -65.153 0.025 1.00 34.16 ? 101 RR2 A CC6 1 HETATM 275 C CC7 . RR2 C 2 . ? 10.706 -65.300 1.409 1.00 35.36 ? 101 RR2 A CC7 1 HETATM 276 C CC8 . RR2 C 2 . ? 8.500 -64.171 1.621 1.00 43.96 ? 101 RR2 A CC8 1 HETATM 277 N NC2 . RR2 C 2 . ? 7.509 -63.729 2.416 1.00 33.83 ? 101 RR2 A NC2 1 HETATM 278 C CC9 . RR2 C 2 . ? 9.678 -64.836 2.214 1.00 40.71 ? 101 RR2 A CC9 1 HETATM 279 C CC0 . RR2 C 2 . ? 9.723 -64.981 3.588 1.00 52.64 ? 101 RR2 A CC0 1 HETATM 280 C CCA . RR2 C 2 . ? 8.663 -64.496 4.346 1.00 45.50 ? 101 RR2 A CCA 1 HETATM 281 C CCB . RR2 C 2 . ? 7.574 -63.876 3.740 1.00 38.16 ? 101 RR2 A CCB 1 HETATM 282 C CD1 . RR2 C 2 . ? 4.911 -61.117 -1.037 1.00 35.18 ? 101 RR2 A CD1 1 HETATM 283 C CD2 . RR2 C 2 . ? 3.900 -60.986 -1.992 1.00 40.24 ? 101 RR2 A CD2 1 HETATM 284 C CD3 . RR2 C 2 . ? 3.043 -62.047 -2.272 1.00 40.00 ? 101 RR2 A CD3 1 HETATM 285 N ND1 . RR2 C 2 . ? 5.087 -62.259 -0.363 1.00 26.65 ? 101 RR2 A ND1 1 HETATM 286 C CD4 . RR2 C 2 . ? 4.298 -63.332 -0.587 1.00 29.89 ? 101 RR2 A CD4 1 HETATM 287 C CD5 . RR2 C 2 . ? 3.205 -63.245 -1.588 1.00 39.01 ? 101 RR2 A CD5 1 HETATM 288 C CD6 . RR2 C 2 . ? 2.375 -64.342 -1.830 1.00 39.25 ? 101 RR2 A CD6 1 HETATM 289 C CD7 . RR2 C 2 . ? 2.538 -65.553 -1.149 1.00 40.48 ? 101 RR2 A CD7 1 HETATM 290 C CD8 . RR2 C 2 . ? 4.474 -64.618 0.136 1.00 29.75 ? 101 RR2 A CD8 1 HETATM 291 N ND2 . RR2 C 2 . ? 5.431 -64.796 1.071 1.00 25.02 ? 101 RR2 A ND2 1 HETATM 292 C CD9 . RR2 C 2 . ? 3.542 -65.728 -0.195 1.00 36.61 ? 101 RR2 A CD9 1 HETATM 293 C CD0 . RR2 C 2 . ? 3.696 -66.932 0.475 1.00 34.97 ? 101 RR2 A CD0 1 HETATM 294 C CDA . RR2 C 2 . ? 4.713 -67.041 1.425 1.00 41.53 ? 101 RR2 A CDA 1 HETATM 295 C CDB . RR2 C 2 . ? 5.560 -65.966 1.702 1.00 37.73 ? 101 RR2 A CDB 1 HETATM 296 RU RU1 . RR2 C 2 . ? 2.202 -46.502 14.179 1.00 36.22 ? 101 RR2 A RU1 1 HETATM 297 RU RU2 . RR2 C 2 . ? 6.309 -63.004 1.040 1.00 41.70 ? 101 RR2 A RU2 1 HETATM 298 C C11 . RR2 C 2 . ? 4.368 -55.205 6.921 1.00 34.98 ? 101 RR2 A C11 1 HETATM 299 C C10 . RR2 C 2 . ? 4.108 -56.512 6.511 1.00 31.42 ? 101 RR2 A C10 1 HETATM 300 C C12 . RR2 C 2 . ? 5.386 -54.557 6.224 1.00 35.61 ? 101 RR2 A C12 1 HETATM 301 C C13 . RR2 C 2 . ? 6.116 -55.184 5.203 1.00 31.52 ? 101 RR2 A C13 1 HETATM 302 C C9B . RR2 C 2 . ? 5.868 -56.481 4.814 1.00 30.93 ? 101 RR2 A C9B 1 HETATM 303 C C9A . RR2 C 2 . ? 4.855 -57.122 5.490 1.00 29.74 ? 101 RR2 A C9A 1 HETATM 304 N N9 . RR2 C 2 . ? 4.586 -58.387 5.142 1.00 39.14 ? 101 RR2 A N9 1 HETATM 305 N N14 . RR2 C 2 . ? 6.582 -57.102 3.816 1.00 36.89 ? 101 RR2 A N14 1 HETATM 306 C C8C . RR2 C 2 . ? 6.286 -58.390 3.473 1.00 32.79 ? 101 RR2 A C8C 1 HETATM 307 C C8D . RR2 C 2 . ? 6.970 -59.200 2.404 1.00 29.43 ? 101 RR2 A C8D 1 HETATM 308 C C4A . RR2 C 2 . ? 6.583 -60.528 2.130 1.00 29.55 ? 101 RR2 A C4A 1 HETATM 309 N N4 . RR2 C 2 . ? 7.144 -61.311 1.188 1.00 21.66 ? 101 RR2 A N4 1 HETATM 310 C C3 . RR2 C 2 . ? 8.131 -60.795 0.471 1.00 39.50 ? 101 RR2 A C3 1 HETATM 311 C C2 . RR2 C 2 . ? 8.564 -59.479 0.689 1.00 46.26 ? 101 RR2 A C2 1 HETATM 312 C C1 . RR2 C 2 . ? 7.988 -58.666 1.658 1.00 32.45 ? 101 RR2 A C1 1 HETATM 313 C C8B . RR2 C 2 . ? 5.268 -59.012 4.166 1.00 35.48 ? 101 RR2 A C8B 1 HETATM 314 C C8A . RR2 C 2 . ? 4.899 -60.409 3.843 1.00 30.85 ? 101 RR2 A C8A 1 HETATM 315 C C4B . RR2 C 2 . ? 5.559 -61.116 2.850 1.00 32.93 ? 101 RR2 A C4B 1 HETATM 316 C C8 . RR2 C 2 . ? 3.891 -61.008 4.552 1.00 22.85 ? 101 RR2 A C8 1 HETATM 317 C C7 . RR2 C 2 . ? 3.580 -62.305 4.227 1.00 30.09 ? 101 RR2 A C7 1 HETATM 318 C C6 . RR2 C 2 . ? 4.270 -62.984 3.220 1.00 33.15 ? 101 RR2 A C6 1 HETATM 319 N N5 . RR2 C 2 . ? 5.236 -62.381 2.558 1.00 28.96 ? 101 RR2 A N5 1 HETATM 320 C C31 . RR2 C 2 . ? 3.550 -54.436 7.966 1.00 29.18 ? 101 RR2 A C31 1 HETATM 321 C C30 . RR2 C 2 . ? 4.113 -53.273 8.535 1.00 30.44 ? 101 RR2 A C30 1 HETATM 322 C C32 . RR2 C 2 . ? 2.200 -54.690 8.224 1.00 33.49 ? 101 RR2 A C32 1 HETATM 323 C C33 . RR2 C 2 . ? 1.497 -53.884 9.140 1.00 44.61 ? 101 RR2 A C33 1 HETATM 324 C C9D . RR2 C 2 . ? 2.093 -52.770 9.759 1.00 36.94 ? 101 RR2 A C9D 1 HETATM 325 C C9C . RR2 C 2 . ? 3.422 -52.453 9.454 1.00 38.66 ? 101 RR2 A C9C 1 HETATM 326 N N29 . RR2 C 2 . ? 4.024 -51.357 10.050 1.00 37.83 ? 101 RR2 A N29 1 HETATM 327 N N . RR2 C 2 . ? 1.408 -51.981 10.643 1.00 33.52 ? 101 RR2 A N 1 HETATM 328 C C8G . RR2 C 2 . ? 2.008 -50.889 11.230 1.00 33.90 ? 101 RR2 A C8G 1 HETATM 329 C C8H . RR2 C 2 . ? 1.286 -49.997 12.206 1.00 33.88 ? 101 RR2 A C8H 1 HETATM 330 C C4C . RR2 C 2 . ? 1.895 -48.894 12.802 1.00 33.14 ? 101 RR2 A C4C 1 HETATM 331 N N24 . RR2 C 2 . ? 1.275 -48.095 13.673 1.00 28.22 ? 101 RR2 A N24 1 HETATM 332 C C23 . RR2 C 2 . ? 0.016 -48.310 14.022 1.00 36.57 ? 101 RR2 A C23 1 HETATM 333 C C22 . RR2 C 2 . ? -0.658 -49.389 13.470 1.00 39.58 ? 101 RR2 A C22 1 HETATM 334 C C21 . RR2 C 2 . ? -0.026 -50.241 12.558 1.00 31.62 ? 101 RR2 A C21 1 HETATM 335 C C8F . RR2 C 2 . ? 3.340 -50.563 10.936 1.00 34.30 ? 101 RR2 A C8F 1 HETATM 336 C C8E . RR2 C 2 . ? 3.941 -49.349 11.621 1.00 38.07 ? 101 RR2 A C8E 1 HETATM 337 C C4D . RR2 C 2 . ? 3.192 -48.563 12.529 1.00 36.28 ? 101 RR2 A C4D 1 HETATM 338 C C28 . RR2 C 2 . ? 5.250 -48.975 11.378 1.00 33.86 ? 101 RR2 A C28 1 HETATM 339 C C27 . RR2 C 2 . ? 5.718 -47.853 12.053 1.00 41.02 ? 101 RR2 A C27 1 HETATM 340 C C26 . RR2 C 2 . ? 4.899 -47.130 12.940 1.00 37.23 ? 101 RR2 A C26 1 HETATM 341 N N25 . RR2 C 2 . ? 3.635 -47.473 13.192 1.00 27.54 ? 101 RR2 A N25 1 HETATM 342 O O . HOH D 3 . ? 14.086 -65.362 4.632 1.00 24.02 ? 201 HOH A O 1 HETATM 343 O O . HOH D 3 . ? -1.769 -62.822 10.840 1.00 42.81 ? 202 HOH A O 1 HETATM 344 O O . HOH D 3 . ? 12.297 -63.039 5.348 1.00 38.97 ? 203 HOH A O 1 HETATM 345 O O . HOH D 3 . ? 7.917 -68.197 -0.063 1.00 39.57 ? 204 HOH A O 1 HETATM 346 O O . HOH D 3 . ? 6.578 -68.712 3.691 1.00 40.82 ? 205 HOH A O 1 HETATM 347 O O . HOH D 3 . ? 8.407 -68.445 11.127 1.00 44.30 ? 206 HOH A O 1 HETATM 348 O O . HOH D 3 . ? 6.146 -67.244 -2.236 1.00 40.90 ? 207 HOH A O 1 HETATM 349 O O . HOH D 3 . ? -0.431 -68.442 -0.084 1.00 35.20 ? 208 HOH A O 1 HETATM 350 O O . HOH D 3 . ? -2.886 -68.987 4.540 1.00 36.87 ? 209 HOH A O 1 HETATM 351 O O . HOH D 3 . ? -2.649 -67.963 1.760 1.00 45.07 ? 210 HOH A O 1 HETATM 352 O O . HOH D 3 . ? -1.669 -52.256 8.833 1.00 39.19 ? 211 HOH A O 1 HETATM 353 O O . HOH D 3 . ? 11.463 -61.744 0.704 1.00 39.76 ? 212 HOH A O 1 HETATM 354 O O . HOH E 3 . ? 5.293 -64.933 -4.384 1.00 44.37 ? 101 HOH B O 1 HETATM 355 O O . HOH E 3 . ? 10.443 -52.821 -1.160 1.00 42.37 ? 102 HOH B O 1 HETATM 356 O O . HOH E 3 . ? 12.705 -59.136 5.560 1.00 42.87 ? 103 HOH B O 1 HETATM 357 O O . HOH E 3 . ? 11.632 -53.797 -3.097 1.00 53.38 ? 104 HOH B O 1 #