0.017743
0.010244
0.000000
0.000000
0.020488
0.000000
0.000000
0.000000
0.012107
0.00000
0.00000
0.00000
Jeong, B.-C.
Park, S.H.
Yoo, K.S.
Shin, J.S.
Song, H.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
56.361
56.361
82.595
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
430
265
271
10.1016/j.bbrc.2012.10.139
23159611
Crystal structure of the single cystathionine beta-synthase domain-containing protein CBSX1 from Arabidopsis thaliana
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2007-06-23
ADSC QUANTUM 210r
Double-crystal Si(111) liquid-nitrogen-cooled
SINGLE WAVELENGTH
M
x-ray
1
0.97923
1.0
AR-NW12A
Photon Factory
0.97923
SYNCHROTRON
PHOTON FACTORY BEAMLINE AR-NW12A
18226.809
CBS domain-containing protein CBSX1, chloroplastic
1
man
polymer
18.015
water
34
nat
water
CBS domain-containing protein 2, AtCDCP2, Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, AtLEJ2
no
no
GSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVD
STWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKR
SGDRNA
GSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVD
STWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKR
SGDRNA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse-ear cress,thale-cress
sample
AP22.61, At4g36910, C7A10.450, CBSX1, CDCP2
3702
Arabidopsis thaliana
562
Escherichia coli
BL21(DE3)
Plasmid
pET-GST
1
2.08
40.80
THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS
VAPOR DIFFUSION, HANGING DROP
4.2
100mM phophate-acetate pH 4.2, 200mM NaCl, 20%(w/w) PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
repository
Initial release
Database references
1
0
2013-01-16
1
1
2014-09-03
RCSB
Y
PDBJ
2012-08-24
REL
REL
HOH
water
HOH
1
2
HOH
HOH
301
A
HOH
2
2
HOH
HOH
302
A
HOH
3
2
HOH
HOH
303
A
HOH
4
2
HOH
HOH
304
A
HOH
5
2
HOH
HOH
305
A
HOH
6
2
HOH
HOH
306
A
HOH
7
2
HOH
HOH
307
A
HOH
8
2
HOH
HOH
308
A
HOH
9
2
HOH
HOH
309
A
HOH
10
2
HOH
HOH
310
A
HOH
11
2
HOH
HOH
311
A
HOH
12
2
HOH
HOH
312
A
HOH
13
2
HOH
HOH
313
A
HOH
14
2
HOH
HOH
314
A
HOH
15
2
HOH
HOH
315
A
HOH
16
2
HOH
HOH
316
A
HOH
17
2
HOH
HOH
317
A
HOH
18
2
HOH
HOH
318
A
HOH
19
2
HOH
HOH
319
A
HOH
20
2
HOH
HOH
320
A
HOH
21
2
HOH
HOH
321
A
HOH
22
2
HOH
HOH
322
A
HOH
23
2
HOH
HOH
323
A
HOH
24
2
HOH
HOH
324
A
HOH
25
2
HOH
HOH
325
A
HOH
26
2
HOH
HOH
326
A
HOH
27
2
HOH
HOH
327
A
HOH
28
2
HOH
HOH
328
A
HOH
29
2
HOH
HOH
329
A
HOH
30
2
HOH
HOH
330
A
HOH
31
2
HOH
HOH
331
A
HOH
32
2
HOH
HOH
332
A
HOH
33
2
HOH
HOH
333
A
HOH
34
2
HOH
HOH
334
A
n
1
71
A
n
2
72
A
n
3
73
A
VAL
74
n
4
VAL
74
A
TYR
75
n
5
TYR
75
A
THR
76
n
6
THR
76
A
VAL
77
n
7
VAL
77
A
GLY
78
n
8
GLY
78
A
GLU
79
n
9
GLU
79
A
PHE
80
n
10
PHE
80
A
MET
81
n
11
MET
81
A
THR
82
n
12
THR
82
A
LYS
83
n
13
LYS
83
A
LYS
84
n
14
LYS
84
A
GLU
85
n
15
GLU
85
A
ASP
86
n
16
ASP
86
A
LEU
87
n
17
LEU
87
A
HIS
88
n
18
HIS
88
A
VAL
89
n
19
VAL
89
A
VAL
90
n
20
VAL
90
A
LYS
91
n
21
LYS
91
A
PRO
92
n
22
PRO
92
A
THR
93
n
23
THR
93
A
THR
94
n
24
THR
94
A
THR
95
n
25
THR
95
A
VAL
96
n
26
VAL
96
A
ASP
97
n
27
ASP
97
A
GLU
98
n
28
GLU
98
A
ALA
99
n
29
ALA
99
A
LEU
100
n
30
LEU
100
A
GLU
101
n
31
GLU
101
A
LEU
102
n
32
LEU
102
A
LEU
103
n
33
LEU
103
A
VAL
104
n
34
VAL
104
A
GLU
105
n
35
GLU
105
A
ASN
106
n
36
ASN
106
A
ARG
107
n
37
ARG
107
A
ILE
108
n
38
ILE
108
A
THR
109
n
39
THR
109
A
GLY
110
n
40
GLY
110
A
PHE
111
n
41
PHE
111
A
PRO
112
n
42
PRO
112
A
VAL
113
n
43
VAL
113
A
ILE
114
n
44
ILE
114
A
ASP
115
n
45
ASP
115
A
GLU
116
n
46
GLU
116
A
ASP
117
n
47
ASP
117
A
TRP
118
n
48
TRP
118
A
LYS
119
n
49
LYS
119
A
LEU
120
n
50
LEU
120
A
VAL
121
n
51
VAL
121
A
GLY
122
n
52
GLY
122
A
LEU
123
n
53
LEU
123
A
VAL
124
n
54
VAL
124
A
SER
125
n
55
SER
125
A
ASP
126
n
56
ASP
126
A
TYR
127
n
57
TYR
127
A
ASP
128
n
58
ASP
128
A
LEU
129
n
59
LEU
129
A
LEU
130
n
60
LEU
130
A
ALA
131
n
61
ALA
131
A
LEU
132
n
62
LEU
132
A
ALA
133
n
63
ASP
133
A
n
64
134
A
n
65
135
A
n
66
136
A
n
67
137
A
n
68
138
A
n
69
139
A
n
70
140
A
n
71
141
A
n
72
142
A
n
73
143
A
n
74
144
A
n
75
145
A
n
76
146
A
n
77
147
A
n
78
148
A
n
79
149
A
n
80
150
A
n
81
151
A
n
82
152
A
n
83
153
A
n
84
154
A
n
85
155
A
n
86
156
A
n
87
157
A
n
88
158
A
n
89
159
A
n
90
160
A
n
91
161
A
n
92
162
A
n
93
163
A
n
94
164
A
n
95
165
A
n
96
166
A
n
97
167
A
GLY
168
n
98
GLY
168
A
LYS
169
n
99
LYS
169
A
LEU
170
n
100
LEU
170
A
VAL
171
n
101
VAL
171
A
GLY
172
n
102
GLY
172
A
ASP
173
n
103
ASP
173
A
LEU
174
n
104
LEU
174
A
MET
175
n
105
MET
175
A
THR
176
n
106
THR
176
A
PRO
177
n
107
PRO
177
A
ALA
178
n
108
ALA
178
A
PRO
179
n
109
PRO
179
A
LEU
180
n
110
LEU
180
A
VAL
181
n
111
VAL
181
A
VAL
182
n
112
VAL
182
A
GLU
183
n
113
GLU
183
A
GLU
184
n
114
GLU
184
A
LYS
185
n
115
LYS
185
A
THR
186
n
116
THR
186
A
ASN
187
n
117
ASN
187
A
LEU
188
n
118
LEU
188
A
GLU
189
n
119
GLU
189
A
ASP
190
n
120
ASP
190
A
ALA
191
n
121
ALA
191
A
ALA
192
n
122
ALA
192
A
LYS
193
n
123
LYS
193
A
ILE
194
n
124
ILE
194
A
LEU
195
n
125
LEU
195
A
LEU
196
n
126
LEU
196
A
GLU
197
n
127
GLU
197
A
THR
198
n
128
THR
198
A
LYS
199
n
129
LYS
199
A
TYR
200
n
130
TYR
200
A
ARG
201
n
131
ARG
201
A
ARG
202
n
132
ARG
202
A
LEU
203
n
133
LEU
203
A
PRO
204
n
134
PRO
204
A
VAL
205
n
135
VAL
205
A
VAL
206
n
136
VAL
206
A
ASP
207
n
137
ASP
207
A
SER
208
n
138
SER
208
A
ASP
209
n
139
ASP
209
A
GLY
210
n
140
GLY
210
A
LYS
211
n
141
LYS
211
A
LEU
212
n
142
LEU
212
A
VAL
213
n
143
VAL
213
A
GLY
214
n
144
GLY
214
A
ILE
215
n
145
ILE
215
A
ILE
216
n
146
ILE
216
A
THR
217
n
147
THR
217
A
ARG
218
n
148
ARG
218
A
GLY
219
n
149
GLY
219
A
ASN
220
n
150
ASN
220
A
VAL
221
n
151
VAL
221
A
VAL
222
n
152
VAL
222
A
ARG
223
n
153
ARG
223
A
ALA
224
n
154
ALA
224
A
ALA
225
n
155
ALA
225
A
LEU
226
n
156
LEU
226
A
GLN
227
n
157
GLN
227
A
ILE
228
n
158
ILE
228
A
LYS
229
n
159
LYS
229
A
n
160
230
A
n
161
231
A
n
162
232
A
n
163
233
A
n
164
234
A
n
165
235
A
n
166
236
A
author_and_software_defined_assembly
PISA
2
dimeric
1720
-9
13210
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_555
-x,-x+y,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
27.5316666667
A
N
THR
82
A
N
THR
12
A
O
ILE
215
A
O
ILE
145
A
O
GLY
214
A
O
GLY
144
A
N
VAL
205
A
N
VAL
135
A
N
VAL
113
A
N
VAL
43
A
O
GLY
122
A
O
GLY
52
A
N
LEU
123
A
N
LEU
53
A
O
THR
176
A
O
THR
106
1
A
CG
ASP
133
A
CG
ASP
63
1
Y
1
A
OD1
ASP
133
A
OD1
ASP
63
1
Y
1
A
OD2
ASP
133
A
OD2
ASP
63
1
Y
1
A
GLY
71
A
GLY
1
1
Y
1
A
SER
72
A
SER
2
1
Y
1
A
GLY
73
A
GLY
3
1
Y
1
A
SER
134
A
SER
64
1
Y
1
A
ILE
135
A
ILE
65
1
Y
1
A
SER
136
A
SER
66
1
Y
1
A
GLY
137
A
GLY
67
1
Y
1
A
SER
138
A
SER
68
1
Y
1
A
GLY
139
A
GLY
69
1
Y
1
A
ARG
140
A
ARG
70
1
Y
1
A
THR
141
A
THR
71
1
Y
1
A
GLU
142
A
GLU
72
1
Y
1
A
ASN
143
A
ASN
73
1
Y
1
A
SER
144
A
SER
74
1
Y
1
A
MET
145
A
MET
75
1
Y
1
A
PHE
146
A
PHE
76
1
Y
1
A
PRO
147
A
PRO
77
1
Y
1
A
GLU
148
A
GLU
78
1
Y
1
A
VAL
149
A
VAL
79
1
Y
1
A
ASP
150
A
ASP
80
1
Y
1
A
SER
151
A
SER
81
1
Y
1
A
THR
152
A
THR
82
1
Y
1
A
TRP
153
A
TRP
83
1
Y
1
A
LYS
154
A
LYS
84
1
Y
1
A
THR
155
A
THR
85
1
Y
1
A
PHE
156
A
PHE
86
1
Y
1
A
ASN
157
A
ASN
87
1
Y
1
A
ALA
158
A
ALA
88
1
Y
1
A
VAL
159
A
VAL
89
1
Y
1
A
GLN
160
A
GLN
90
1
Y
1
A
LYS
161
A
LYS
91
1
Y
1
A
LEU
162
A
LEU
92
1
Y
1
A
LEU
163
A
LEU
93
1
Y
1
A
SER
164
A
SER
94
1
Y
1
A
LYS
165
A
LYS
95
1
Y
1
A
THR
166
A
THR
96
1
Y
1
A
ASN
167
A
ASN
97
1
Y
1
A
ARG
230
A
ARG
160
1
Y
1
A
SER
231
A
SER
161
1
Y
1
A
GLY
232
A
GLY
162
1
Y
1
A
ASP
233
A
ASP
163
1
Y
1
A
ARG
234
A
ARG
164
1
Y
1
A
ASN
235
A
ASN
165
1
Y
1
A
ALA
236
A
ALA
166
1
Y
1
A
ALA
131
33.23
66.00
THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS
0.3095
0.2484
0.2547
2.392
31.527
1158
11556
10.02
99.55
0.40
1
1.36
MOLECULAR REPLACEMENT
32.78
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
2.392
31.527
34
980
0
0
946
0.009
957
1.190
1299
18.180
359
0.070
165
0.004
161
0.3956
0.2811
2.5010
157
1293
98.00
0.3327
0.2767
2.6328
144
1282
100.00
0.3831
0.2777
2.7977
132
1326
100.00
0.3796
0.2656
3.0136
138
1289
100.00
0.3316
0.2549
3.3165
164
1321
100.00
0.2670
0.2236
3.7957
135
1298
100.00
0.2632
0.2244
4.7796
146
1303
100.00
0.3254
0.2637
31.5297
142
1286
98.00
60.27
2.392
50.0
4GQV
11556
1.0
1.0
0.069
1
60.8
10.1
data collection
HKL-2000
phasing
PHASES
refinement
PHENIX
(phenix.refine: 1.8_1069)
data reduction
HKL-2000
data scaling
HKL-2000
CBS domain-containing protein CBSX1, chloroplastic
Crystal structure of CBS-pair protein, CBSX1 from Arabidopsis thaliana
1
N
N
2
N
N
A
THR
76
A
THR
6
HELX_P
A
MET
81
A
MET
11
1
1
6
A
GLU
85
A
GLU
15
HELX_P
A
LEU
87
A
LEU
17
5
2
3
A
THR
95
A
THR
25
HELX_P
A
ARG
107
A
ARG
37
1
3
13
A
ASP
126
A
ASP
56
HELX_P
A
LEU
130
A
LEU
60
1
4
5
A
LEU
170
A
LEU
100
HELX_P
A
MET
175
A
MET
105
1
5
6
A
ASN
187
A
ASN
117
HELX_P
A
THR
198
A
THR
128
1
6
12
A
THR
217
A
THR
147
HELX_P
A
GLN
227
A
GLN
157
1
7
11
PROTEIN BINDING
CBS domain, Thioredoxin, Chloroplast, plant, PROTEIN BINDING
CBSX1_ARATH
UNP
1
72
O23193
SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDS
TWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRS
GDRNA
72
236
4GQV
72
236
O23193
A
1
2
166
1
EXPRESSION TAG
GLY
71
4GQV
A
O23193
UNP
1
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
82
A
THR
12
A
LYS
83
A
LYS
13
A
LEU
212
A
LEU
142
A
ILE
215
A
ILE
145
A
PRO
204
A
PRO
134
A
VAL
206
A
VAL
136
A
GLY
110
A
GLY
40
A
ILE
114
A
ILE
44
A
LEU
120
A
LEU
50
A
SER
125
A
SER
55
A
THR
176
A
THR
106
A
PRO
177
A
PRO
107
152
P 31 2 1