0.014333
0.000000
0.000000
0.000000
0.015934
0.000000
0.000000
0.000000
0.026427
0.00000
0.00000
0.00000
Stura, E.A.
Vera, L.
Beau, F.
Devel, L.
Cassar-Lajeunesse, E.
Dive, V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
69.770
62.760
37.840
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C31 H31 Br Cl N4 O6 P
701.932
N-[(2S)-3-[(R)-(4-bromophenyl)(hydroxy)phosphoryl]-2-{[3-(3'-chlorobiphenyl-4-yl)-1,2-oxazol-5-yl]methyl}propanoyl]-L-a lanyl-L-alaninamide
RXP470B
peptide-like
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
Y
129
N
C
Y
130
N
N
Y
131
N
C
Y
132
N
C
Y
133
N
N
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
S
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
N
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
S
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
O
Y
278
N
N
Y
279
N
O
N
280
N
C
N
281
S
C
N
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
N
292
N
CL
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
N
299
N
C
N
300
N
P
N
301
N
O
N
302
N
O
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
N
307
N
BR
Y
308
N
C
Y
309
N
C
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
N
C
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
N
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
R
C
N
371
N
O
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
N
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
N
421
N
O
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
N
439
N
C
N
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
Y
270
N
doub
Y
271
N
sing
Y
272
N
sing
N
273
N
sing
Y
274
N
doub
Y
275
N
doub
Y
276
N
sing
Y
277
N
doub
Y
278
N
sing
N
279
N
sing
Y
280
N
sing
Y
281
N
doub
N
282
N
doub
N
283
N
sing
N
284
N
sing
Y
285
N
doub
Y
286
N
doub
Y
287
N
sing
Y
288
N
sing
Y
289
N
sing
Y
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
Y
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
Y
307
N
doub
Y
308
N
doub
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
Y
410
N
doub
Y
411
N
sing
Y
412
N
sing
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
56
1149
1159
10.1021/jm301574d
23343195
Molecular determinants of a selective matrix metalloprotease-12 inhibitor: insights from crystallography and thermodynamic studies.
2013
10.2210/pdb4gr0/pdb
pdb_00004gr0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2010-04-24
ADSC QUANTUM 4r
Diamond (111), Ge(220)
SINGLE WAVELENGTH
M
x-ray
1
0.9334
1.0
ID14-1
ESRF
0.9334
SYNCHROTRON
ESRF BEAMLINE ID14-1
17615.670
Macrophage metalloelastase
3.4.24.65
catalytic domain (UNP residues 106-263)
F171D
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
40.078
CALCIUM ION
3
syn
non-polymer
701.932
N-[(2S)-3-[(R)-(4-bromophenyl)(hydroxy)phosphoryl]-2-{[3-(3'-chlorobiphenyl-4-yl)-1,2-oxazol-5-yl]methyl}propanoyl]-L-a lanyl-L-alaninamide
1
syn
non-polymer
18.015
water
193
nat
water
MME, Macrophage elastase, ME, hME, Matrix metalloproteinase-12, MMP-12
no
no
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
HME, MMP12
9606
Homo sapiens
511693
Escherichia coli
BL21
PLASMID
PET24A
1
2.35
47.69
VAPOR DIFFUSION, SITTING DROP
8.5
Protein complex: hMMP12 F171D 855 microM, inhibitor 0.788 milliM. Reservoir: 35% PEG 4,000
0.2M imidazole malate pH 8.5. Drops: 1 microL protein complex + 1 microL reservoir. Cryoprotectant: 40% MPEG 5K, 10% 1,2-propanediol, (10% (Na acetate, ADA, Bicine) 90% at pH 4/ 10% at pH 9.0). Flash freezing in Liquid N2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp
chem_comp_atom
chem_comp_bond
database_2
entity
pdbx_entity_nonpoly
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
Structure summary
1
0
2013-02-06
1
1
2013-05-22
1
2
2023-09-13
_chem_comp.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of the catalytic domain of Human MMP12 in complex with selective phosphinic inhibitor RXP470.1
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with L-glutamate motif inhibitor
Human MMP12 in complex with L-glutamate motif inhibitor
Human MMP12 in complex with L-glutamate motif inhibitor
RCSB
Y
RCSB
2012-08-24
REL
REL
ZN
ZINC ION
CA
CALCIUM ION
R4B
N-[(2S)-3-[(R)-(4-bromophenyl)(hydroxy)phosphoryl]-2-{[3-(3'-chlorobiphenyl-4-yl)-1,2-oxazol-5-yl]methyl}propanoyl]-L-a lanyl-L-alaninamide
HOH
water
4GQL
PDB
experimental model
Enzyme inhibitor
N-[(2S)-3-[(R)-(4-BROMOPHENYL)(HYDROXY)PHOSPHORYL]-2-{[3-(3'-CHLOROBIPHENYL-4-YL)-1,2-OXAZOL-5-YL]METHYL}PROPANOYL]-L-ALANYL-L-ALANINAMIDE
Peptide-like
ZN
500
2
ZN
ZN
301
A
ZN
501
2
ZN
ZN
302
A
CA
502
3
CA
CA
303
A
CA
503
3
CA
CA
304
A
CA
504
3
CA
CA
305
A
R4B
1
4
R4B
R4B
306
A
HOH
1
5
HOH
HOH
401
A
HOH
2
5
HOH
HOH
402
A
HOH
3
5
HOH
HOH
403
A
HOH
4
5
HOH
HOH
404
A
HOH
5
5
HOH
HOH
405
A
HOH
6
5
HOH
HOH
406
A
HOH
7
5
HOH
HOH
407
A
HOH
8
5
HOH
HOH
408
A
HOH
9
5
HOH
HOH
409
A
HOH
10
5
HOH
HOH
410
A
HOH
11
5
HOH
HOH
411
A
HOH
12
5
HOH
HOH
412
A
HOH
13
5
HOH
HOH
413
A
HOH
14
5
HOH
HOH
414
A
HOH
15
5
HOH
HOH
415
A
HOH
16
5
HOH
HOH
416
A
HOH
17
5
HOH
HOH
417
A
HOH
18
5
HOH
HOH
418
A
HOH
19
5
HOH
HOH
419
A
HOH
20
5
HOH
HOH
420
A
HOH
21
5
HOH
HOH
421
A
HOH
22
5
HOH
HOH
422
A
HOH
23
5
HOH
HOH
423
A
HOH
24
5
HOH
HOH
424
A
HOH
25
5
HOH
HOH
425
A
HOH
26
5
HOH
HOH
426
A
HOH
27
5
HOH
HOH
427
A
HOH
28
5
HOH
HOH
428
A
HOH
29
5
HOH
HOH
429
A
HOH
30
5
HOH
HOH
430
A
HOH
31
5
HOH
HOH
431
A
HOH
32
5
HOH
HOH
432
A
HOH
33
5
HOH
HOH
433
A
HOH
34
5
HOH
HOH
434
A
HOH
35
5
HOH
HOH
435
A
HOH
36
5
HOH
HOH
436
A
HOH
37
5
HOH
HOH
437
A
HOH
38
5
HOH
HOH
438
A
HOH
39
5
HOH
HOH
439
A
HOH
40
5
HOH
HOH
440
A
HOH
41
5
HOH
HOH
441
A
HOH
42
5
HOH
HOH
442
A
HOH
43
5
HOH
HOH
443
A
HOH
44
5
HOH
HOH
444
A
HOH
45
5
HOH
HOH
445
A
HOH
46
5
HOH
HOH
446
A
HOH
47
5
HOH
HOH
447
A
HOH
48
5
HOH
HOH
448
A
HOH
49
5
HOH
HOH
449
A
HOH
50
5
HOH
HOH
450
A
HOH
51
5
HOH
HOH
451
A
HOH
52
5
HOH
HOH
452
A
HOH
53
5
HOH
HOH
453
A
HOH
54
5
HOH
HOH
454
A
HOH
55
5
HOH
HOH
455
A
HOH
56
5
HOH
HOH
456
A
HOH
57
5
HOH
HOH
457
A
HOH
58
5
HOH
HOH
458
A
HOH
59
5
HOH
HOH
459
A
HOH
60
5
HOH
HOH
460
A
HOH
61
5
HOH
HOH
461
A
HOH
62
5
HOH
HOH
462
A
HOH
63
5
HOH
HOH
463
A
HOH
64
5
HOH
HOH
464
A
HOH
65
5
HOH
HOH
465
A
HOH
66
5
HOH
HOH
466
A
HOH
67
5
HOH
HOH
467
A
HOH
68
5
HOH
HOH
468
A
HOH
69
5
HOH
HOH
469
A
HOH
70
5
HOH
HOH
470
A
HOH
71
5
HOH
HOH
471
A
HOH
72
5
HOH
HOH
472
A
HOH
73
5
HOH
HOH
473
A
HOH
74
5
HOH
HOH
474
A
HOH
75
5
HOH
HOH
475
A
HOH
76
5
HOH
HOH
476
A
HOH
77
5
HOH
HOH
477
A
HOH
78
5
HOH
HOH
478
A
HOH
79
5
HOH
HOH
479
A
HOH
80
5
HOH
HOH
480
A
HOH
81
5
HOH
HOH
481
A
HOH
82
5
HOH
HOH
482
A
HOH
83
5
HOH
HOH
483
A
HOH
84
5
HOH
HOH
484
A
HOH
85
5
HOH
HOH
485
A
HOH
86
5
HOH
HOH
486
A
HOH
87
5
HOH
HOH
487
A
HOH
88
5
HOH
HOH
488
A
HOH
89
5
HOH
HOH
489
A
HOH
90
5
HOH
HOH
490
A
HOH
91
5
HOH
HOH
491
A
HOH
92
5
HOH
HOH
492
A
HOH
93
5
HOH
HOH
493
A
HOH
94
5
HOH
HOH
494
A
HOH
95
5
HOH
HOH
495
A
HOH
96
5
HOH
HOH
496
A
HOH
97
5
HOH
HOH
497
A
HOH
98
5
HOH
HOH
498
A
HOH
99
5
HOH
HOH
499
A
HOH
100
5
HOH
HOH
500
A
HOH
101
5
HOH
HOH
501
A
HOH
102
5
HOH
HOH
502
A
HOH
103
5
HOH
HOH
503
A
HOH
104
5
HOH
HOH
504
A
HOH
105
5
HOH
HOH
505
A
HOH
106
5
HOH
HOH
506
A
HOH
107
5
HOH
HOH
507
A
HOH
108
5
HOH
HOH
508
A
HOH
109
5
HOH
HOH
509
A
HOH
110
5
HOH
HOH
510
A
HOH
111
5
HOH
HOH
511
A
HOH
112
5
HOH
HOH
512
A
HOH
113
5
HOH
HOH
513
A
HOH
114
5
HOH
HOH
514
A
HOH
115
5
HOH
HOH
515
A
HOH
116
5
HOH
HOH
516
A
HOH
117
5
HOH
HOH
517
A
HOH
118
5
HOH
HOH
518
A
HOH
119
5
HOH
HOH
519
A
HOH
120
5
HOH
HOH
520
A
HOH
121
5
HOH
HOH
521
A
HOH
122
5
HOH
HOH
522
A
HOH
123
5
HOH
HOH
523
A
HOH
124
5
HOH
HOH
524
A
HOH
125
5
HOH
HOH
525
A
HOH
126
5
HOH
HOH
526
A
HOH
127
5
HOH
HOH
527
A
HOH
128
5
HOH
HOH
528
A
HOH
129
5
HOH
HOH
529
A
HOH
130
5
HOH
HOH
530
A
HOH
131
5
HOH
HOH
531
A
HOH
132
5
HOH
HOH
532
A
HOH
133
5
HOH
HOH
533
A
HOH
134
5
HOH
HOH
534
A
HOH
135
5
HOH
HOH
535
A
HOH
136
5
HOH
HOH
536
A
HOH
137
5
HOH
HOH
537
A
HOH
138
5
HOH
HOH
538
A
HOH
139
5
HOH
HOH
539
A
HOH
140
5
HOH
HOH
540
A
HOH
141
5
HOH
HOH
541
A
HOH
142
5
HOH
HOH
542
A
HOH
143
5
HOH
HOH
543
A
HOH
144
5
HOH
HOH
544
A
HOH
145
5
HOH
HOH
545
A
HOH
146
5
HOH
HOH
546
A
HOH
147
5
HOH
HOH
547
A
HOH
148
5
HOH
HOH
548
A
HOH
149
5
HOH
HOH
549
A
HOH
150
5
HOH
HOH
550
A
HOH
151
5
HOH
HOH
551
A
HOH
152
5
HOH
HOH
552
A
HOH
153
5
HOH
HOH
553
A
HOH
154
5
HOH
HOH
554
A
HOH
155
5
HOH
HOH
555
A
HOH
156
5
HOH
HOH
556
A
HOH
157
5
HOH
HOH
557
A
HOH
158
5
HOH
HOH
558
A
HOH
159
5
HOH
HOH
559
A
HOH
160
5
HOH
HOH
560
A
HOH
161
5
HOH
HOH
561
A
HOH
162
5
HOH
HOH
562
A
HOH
163
5
HOH
HOH
563
A
HOH
164
5
HOH
HOH
564
A
HOH
165
5
HOH
HOH
565
A
HOH
166
5
HOH
HOH
566
A
HOH
167
5
HOH
HOH
567
A
HOH
168
5
HOH
HOH
568
A
HOH
169
5
HOH
HOH
569
A
HOH
170
5
HOH
HOH
570
A
HOH
171
5
HOH
HOH
571
A
HOH
172
5
HOH
HOH
572
A
HOH
173
5
HOH
HOH
573
A
HOH
174
5
HOH
HOH
574
A
HOH
176
5
HOH
HOH
575
A
HOH
177
5
HOH
HOH
576
A
HOH
178
5
HOH
HOH
577
A
HOH
179
5
HOH
HOH
578
A
HOH
180
5
HOH
HOH
579
A
HOH
181
5
HOH
HOH
580
A
HOH
182
5
HOH
HOH
581
A
HOH
183
5
HOH
HOH
582
A
HOH
184
5
HOH
HOH
583
A
HOH
185
5
HOH
HOH
584
A
HOH
186
5
HOH
HOH
585
A
HOH
187
5
HOH
HOH
586
A
HOH
188
5
HOH
HOH
587
A
HOH
189
5
HOH
HOH
588
A
HOH
190
5
HOH
HOH
589
A
HOH
191
5
HOH
HOH
590
A
HOH
192
5
HOH
HOH
591
A
HOH
193
5
HOH
HOH
592
A
HOH
194
5
HOH
HOH
593
A
MET
105
n
1
MET
105
A
GLY
106
n
2
GLY
106
A
PRO
107
n
3
PRO
107
A
VAL
108
n
4
VAL
108
A
TRP
109
n
5
TRP
109
A
ARG
110
n
6
ARG
110
A
LYS
111
n
7
LYS
111
A
HIS
112
n
8
HIS
112
A
TYR
113
n
9
TYR
113
A
ILE
114
n
10
ILE
114
A
THR
115
n
11
THR
115
A
TYR
116
n
12
TYR
116
A
ARG
117
n
13
ARG
117
A
ILE
118
n
14
ILE
118
A
ASN
119
n
15
ASN
119
A
ASN
120
n
16
ASN
120
A
TYR
121
n
17
TYR
121
A
THR
122
n
18
THR
122
A
PRO
123
n
19
PRO
123
A
ASP
124
n
20
ASP
124
A
MET
125
n
21
MET
125
A
ASN
126
n
22
ASN
126
A
ARG
127
n
23
ARG
127
A
GLU
128
n
24
GLU
128
A
ASP
129
n
25
ASP
129
A
VAL
130
n
26
VAL
130
A
ASP
131
n
27
ASP
131
A
TYR
132
n
28
TYR
132
A
ALA
133
n
29
ALA
133
A
ILE
134
n
30
ILE
134
A
ARG
135
n
31
ARG
135
A
LYS
136
n
32
LYS
136
A
ALA
137
n
33
ALA
137
A
PHE
138
n
34
PHE
138
A
GLN
139
n
35
GLN
139
A
VAL
140
n
36
VAL
140
A
TRP
141
n
37
TRP
141
A
SER
142
n
38
SER
142
A
ASN
143
n
39
ASN
143
A
VAL
144
n
40
VAL
144
A
THR
145
n
41
THR
145
A
PRO
146
n
42
PRO
146
A
LEU
147
n
43
LEU
147
A
LYS
148
n
44
LYS
148
A
PHE
149
n
45
PHE
149
A
SER
150
n
46
SER
150
A
LYS
151
n
47
LYS
151
A
ILE
152
n
48
ILE
152
A
ASN
153
n
49
ASN
153
A
THR
154
n
50
THR
154
A
GLY
155
n
51
GLY
155
A
MET
156
n
52
MET
156
A
ALA
157
n
53
ALA
157
A
ASP
158
n
54
ASP
158
A
ILE
159
n
55
ILE
159
A
LEU
160
n
56
LEU
160
A
VAL
161
n
57
VAL
161
A
VAL
162
n
58
VAL
162
A
PHE
163
n
59
PHE
163
A
ALA
164
n
60
ALA
164
A
ARG
165
n
61
ARG
165
A
GLY
166
n
62
GLY
166
A
ALA
167
n
63
ALA
167
A
HIS
168
n
64
HIS
168
A
GLY
169
n
65
GLY
169
A
ASP
170
n
66
ASP
170
A
ASP
171
n
67
ASP
171
A
HIS
172
n
68
HIS
172
A
ALA
173
n
69
ALA
173
A
PHE
174
n
70
PHE
174
A
ASP
175
n
71
ASP
175
A
GLY
176
n
72
GLY
176
A
LYS
177
n
73
LYS
177
A
GLY
178
n
74
GLY
178
A
GLY
179
n
75
GLY
179
A
ILE
180
n
76
ILE
180
A
LEU
181
n
77
LEU
181
A
ALA
182
n
78
ALA
182
A
HIS
183
n
79
HIS
183
A
ALA
184
n
80
ALA
184
A
PHE
185
n
81
PHE
185
A
GLY
186
n
82
GLY
186
A
PRO
187
n
83
PRO
187
A
GLY
188
n
84
GLY
188
A
SER
189
n
85
SER
189
A
GLY
190
n
86
GLY
190
A
ILE
191
n
87
ILE
191
A
GLY
192
n
88
GLY
192
A
GLY
193
n
89
GLY
193
A
ASP
194
n
90
ASP
194
A
ALA
195
n
91
ALA
195
A
HIS
196
n
92
HIS
196
A
PHE
197
n
93
PHE
197
A
ASP
198
n
94
ASP
198
A
GLU
199
n
95
GLU
199
A
ASP
200
n
96
ASP
200
A
GLU
201
n
97
GLU
201
A
PHE
202
n
98
PHE
202
A
TRP
203
n
99
TRP
203
A
THR
204
n
100
THR
204
A
THR
205
n
101
THR
205
A
HIS
206
n
102
HIS
206
A
SER
207
n
103
SER
207
A
GLY
208
n
104
GLY
208
A
GLY
209
n
105
GLY
209
A
THR
210
n
106
THR
210
A
ASN
211
n
107
ASN
211
A
LEU
212
n
108
LEU
212
A
PHE
213
n
109
PHE
213
A
LEU
214
n
110
LEU
214
A
THR
215
n
111
THR
215
A
ALA
216
n
112
ALA
216
A
VAL
217
n
113
VAL
217
A
HIS
218
n
114
HIS
218
A
GLU
219
n
115
GLU
219
A
ILE
220
n
116
ILE
220
A
GLY
221
n
117
GLY
221
A
HIS
222
n
118
HIS
222
A
SER
223
n
119
SER
223
A
LEU
224
n
120
LEU
224
A
GLY
225
n
121
GLY
225
A
LEU
226
n
122
LEU
226
A
GLY
227
n
123
GLY
227
A
HIS
228
n
124
HIS
228
A
SER
229
n
125
SER
229
A
SER
230
n
126
SER
230
A
ASP
231
n
127
ASP
231
A
PRO
232
n
128
PRO
232
A
LYS
233
n
129
LYS
233
A
ALA
234
n
130
ALA
234
A
VAL
235
n
131
VAL
235
A
MET
236
n
132
MET
236
A
PHE
237
n
133
PHE
237
A
PRO
238
n
134
PRO
238
A
THR
239
n
135
THR
239
A
TYR
240
n
136
TYR
240
A
LYS
241
n
137
LYS
241
A
TYR
242
n
138
TYR
242
A
VAL
243
n
139
VAL
243
A
ASP
244
n
140
ASP
244
A
ILE
245
n
141
ILE
245
A
ASN
246
n
142
ASN
246
A
THR
247
n
143
THR
247
A
PHE
248
n
144
PHE
248
A
ARG
249
n
145
ARG
249
A
LEU
250
n
146
LEU
250
A
SER
251
n
147
SER
251
A
ALA
252
n
148
ALA
252
A
ASP
253
n
149
ASP
253
A
ASP
254
n
150
ASP
254
A
ILE
255
n
151
ILE
255
A
ARG
256
n
152
ARG
256
A
GLY
257
n
153
GLY
257
A
ILE
258
n
154
ILE
258
A
GLN
259
n
155
GLN
259
A
SER
260
n
156
SER
260
A
LEU
261
n
157
LEU
261
A
TYR
262
n
158
TYR
262
A
GLY
263
n
159
GLY
263
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
ASP
124
A
OD1
ASP
20
1_555
49.9
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
146.3
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
158.5
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
88.2
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
88.1
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
80.2
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
80.1
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
122.8
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
78.7
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
120.0
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
424
H
O
HOH
1_555
96.6
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
424
H
O
HOH
1_555
83.5
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
424
H
O
HOH
1_555
103.2
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
424
H
O
HOH
1_555
164.1
A
GLU
201
A
O
GLU
97
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
424
H
O
HOH
1_555
75.8
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
436
H
O
HOH
1_555
131.0
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
436
H
O
HOH
1_555
81.3
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
436
H
O
HOH
1_555
80.1
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
436
H
O
HOH
1_555
86.7
A
GLU
201
A
O
GLU
97
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
436
H
O
HOH
1_555
141.9
A
HOH
424
H
O
HOH
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
436
H
O
HOH
1_555
78.7
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
190
A
O
GLY
86
1_555
159.7
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
91.6
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
94.4
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
94.6
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
104.4
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
92.8
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
417
H
O
HOH
1_555
87.5
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
417
H
O
HOH
1_555
83.5
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
417
H
O
HOH
1_555
171.0
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
417
H
O
HOH
1_555
96.2
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
423
H
O
HOH
1_555
75.5
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
423
H
O
HOH
1_555
86.5
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
423
H
O
HOH
1_555
80.2
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
423
H
O
HOH
1_555
167.5
A
HOH
417
H
O
HOH
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
423
H
O
HOH
1_555
90.9
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
A
ASP
170
A
OD1
ASP
66
1_555
108.2
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
79
1_555
113.9
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
79
1_555
118.6
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
108.3
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
93.9
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
111.9
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
176
A
O
GLY
72
1_555
89.4
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
86.7
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
89.4
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
88.6
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
178.0
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
91.1
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
92.8
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
86.7
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
176.1
A
ILE
180
A
O
ILE
76
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
92.8
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
173.7
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
91.8
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
87.1
A
ILE
180
A
O
ILE
76
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
90.2
A
ASP
198
A
OD1
ASP
94
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
93.5
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
222
A
NE2
HIS
118
1_555
104.3
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
115.3
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
103.5
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
R4B
306
G
O2
R4B
1_555
116.8
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
A
R4B
306
G
O2
R4B
1_555
122.2
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
301
B
ZN
ZN
1_555
A
R4B
306
G
O2
R4B
1_555
94.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
148
A
O
LYS
44
A
N
ILE
114
A
N
ILE
10
A
N
ARG
117
A
N
ARG
13
A
O
VAL
161
A
O
VAL
57
A
N
VAL
162
A
N
VAL
58
A
O
PHE
197
A
O
PHE
93
A
O
HIS
196
A
O
HIS
92
A
N
HIS
183
A
N
HIS
79
A
N
THR
204
A
N
THR
100
A
O
THR
210
A
O
THR
106
1
A
HIS
206
-135.73
-157.50
11.40
0.2178
0.1864
0.1880
1.497
32.406
1317
26347
26336
5.00
95.79
0.17
RANDOM
1
Isotropic
THROUGHOUT
1.99
-3
MOLECULAR REPLACEMENT
23.40
0.90
1.11
4GQL
ML
FLAT BULK SOLVENT MODEL
1.497
32.406
193
1488
49
0
1246
0.006
1394
1.107
1905
15.251
487
0.077
191
0.006
253
0.3971
0.3188
1.5569
110
2095
2095
73.00
0.3282
0.2808
1.6277
139
2648
2648
93.00
0.2847
0.2481
1.7136
149
2830
2830
99.00
0.2630
0.2182
1.8209
149
2825
2825
99.00
0.2093
0.1927
1.9615
151
2860
2860
99.00
0.2084
0.1680
2.1588
151
2877
2877
100.00
0.2082
0.1723
2.4711
152
2896
2896
100.00
0.1977
0.1684
3.1130
154
2915
2915
100.00
0.1770
0.1566
32.4131
162
3073
3073
100.00
20.815
1.5
50
4GR0
27502
26347
0
0
0.111
0.0976
1
9.33
3.51
95.6
1.04
1.50
1.59
1.19
4388
0.849
1
2.88
77.7
0.747
1.59
1.70
2.09
4086
0.636
1
3.58
98.2
0.499
1.70
1.83
3.23
3854
0.427
1
3.66
99.3
0.26
1.83
2.01
6.00
3548
0.223
1
3.66
99.2
0.149
2.01
2.24
10.09
3232
0.128
1
3.64
99.5
0.101
2.24
2.59
13.59
2856
0.086
1
3.63
99.6
0.063
2.59
3.17
19.68
2473
0.053
1
3.61
99.6
0.042
3.17
4.47
29.17
1921
0.036
1
3.52
99.7
0.04
4.47
50.0
31.59
1144
0.033
1
3.25
98.8
data collection
DNA
phasing
MOLREP
refinement
PHENIX
(phenix.refine: 1.8_1069)
data reduction
XDS
data scaling
XDS
Crystal structure of the catalytic domain of Human MMP12 in complex with selective phosphinic inhibitor RXP470B
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
ASN
126
A
ASN
22
HELX_P
A
ASN
143
A
ASN
39
1
1
18
A
LEU
212
A
LEU
108
HELX_P
A
LEU
224
A
LEU
120
1
2
13
A
SER
251
A
SER
147
HELX_P
A
TYR
262
A
TYR
158
1
3
12
metalc
2.350
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.785
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.359
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
metalc
1.953
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
1.848
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.310
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.342
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.329
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.309
A
ILE
180
A
O
ILE
76
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.049
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.320
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.306
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.415
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.090
A
HIS
196
A
ND1
HIS
92
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.383
A
ASP
198
A
OD1
ASP
94
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.353
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.422
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.369
A
GLU
201
A
O
GLU
97
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.257
A
GLU
201
A
OE2
GLU
97
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.044
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.062
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.054
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
1.921
A
ZN
301
B
ZN
ZN
1_555
A
R4B
306
G
O2
R4B
1_555
metalc
2.343
A
CA
303
D
CA
CA
1_555
A
HOH
417
H
O
HOH
1_555
metalc
2.502
A
CA
303
D
CA
CA
1_555
A
HOH
423
H
O
HOH
1_555
metalc
2.411
A
CA
304
E
CA
CA
1_555
A
HOH
424
H
O
HOH
1_555
metalc
2.483
A
CA
304
E
CA
CA
1_555
A
HOH
436
H
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
potent selective phosphinic inhibitor, METZINCIN, Zinc protease, HYDROLASE-HYDROLASE INHIBITOR complex
MMP12_HUMAN
UNP
1
106
P39900
GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAF
GPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
106
263
4GR0
106
263
P39900
A
1
2
159
1
initiating methionine
MET
105
4GR0
A
P39900
UNP
1
1
PHE
engineered mutation
ASP
171
4GR0
A
P39900
UNP
171
67
5
2
parallel
parallel
parallel
anti-parallel
parallel
A
LYS
148
A
LYS
44
A
LYS
151
A
LYS
47
A
TYR
113
A
TYR
9
A
ILE
118
A
ILE
14
A
ILE
159
A
ILE
55
A
ALA
164
A
ALA
60
A
ALA
195
A
ALA
91
A
ASP
198
A
ASP
94
A
ALA
182
A
ALA
78
A
ALA
184
A
ALA
80
A
TRP
203
A
TRP
99
A
THR
204
A
THR
100
A
THR
210
A
THR
106
A
ASN
211
A
ASN
107
BINDING SITE FOR RESIDUE ZN A 301
A
ZN
301
Software
4
BINDING SITE FOR RESIDUE ZN A 302
A
ZN
302
Software
4
BINDING SITE FOR RESIDUE CA A 303
A
CA
303
Software
6
BINDING SITE FOR RESIDUE CA A 304
A
CA
304
Software
5
BINDING SITE FOR RESIDUE CA A 305
A
CA
305
Software
6
BINDING SITE FOR RESIDUE R4B A 306
A
R4B
306
Software
28
A
HIS
218
A
HIS
114
4
1_555
A
HIS
222
A
HIS
118
4
1_555
A
HIS
228
A
HIS
124
4
1_555
A
R4B
306
G
R4B
4
1_555
A
HIS
168
A
HIS
64
4
1_555
A
ASP
170
A
ASP
66
4
1_555
A
HIS
183
A
HIS
79
4
1_555
A
HIS
196
A
HIS
92
4
1_555
A
ASP
158
A
ASP
54
6
1_555
A
GLY
190
A
GLY
86
6
1_555
A
GLY
192
A
GLY
88
6
1_555
A
ASP
194
A
ASP
90
6
1_555
A
HOH
417
H
HOH
6
1_555
A
HOH
423
H
HOH
6
1_555
A
ASP
124
A
ASP
20
5
1_555
A
GLU
199
A
GLU
95
5
1_555
A
GLU
201
A
GLU
97
5
1_555
A
HOH
424
H
HOH
5
1_555
A
HOH
436
H
HOH
5
1_555
A
ASP
175
A
ASP
71
6
1_555
A
GLY
176
A
GLY
72
6
1_555
A
GLY
178
A
GLY
74
6
1_555
A
ILE
180
A
ILE
76
6
1_555
A
ASP
198
A
ASP
94
6
1_555
A
GLU
201
A
GLU
97
6
1_555
A
THR
154
A
THR
50
28
3_455
A
GLY
179
A
GLY
75
28
1_555
A
ILE
180
A
ILE
76
28
1_555
A
LEU
181
A
LEU
77
28
1_555
A
ALA
182
A
ALA
78
28
1_555
A
HIS
183
A
HIS
79
28
1_555
A
THR
215
A
THR
111
28
1_555
A
HIS
218
A
HIS
114
28
1_555
A
GLU
219
A
GLU
115
28
1_555
A
HIS
222
A
HIS
118
28
1_555
A
HIS
228
A
HIS
124
28
1_555
A
PRO
232
A
PRO
128
28
2_565
A
PRO
232
A
PRO
128
28
1_555
A
LYS
233
A
LYS
129
28
1_555
A
ALA
234
A
ALA
130
28
1_555
A
VAL
235
A
VAL
131
28
1_555
A
PHE
237
A
PHE
133
28
1_555
A
PRO
238
A
PRO
134
28
1_555
A
THR
239
A
THR
135
28
1_555
A
TYR
240
A
TYR
136
28
1_555
A
LYS
241
A
LYS
137
28
1_555
A
VAL
243
A
VAL
139
28
1_555
A
PHE
248
A
PHE
144
28
1_555
A
ZN
301
B
ZN
28
1_555
A
HOH
401
H
HOH
28
1_555
A
HOH
431
H
HOH
28
1_555
A
HOH
514
H
HOH
28
1_555
A
HOH
577
H
HOH
28
1_555
18
P 21 21 2