0.014501
0.000000
0.000000
0.000000
0.015840
0.000000
0.000000
0.000000
0.026802
0.00000
0.00000
0.00000
Stura, E.A.
Vera, L.
Beau, F.
Devel, L.
Cassar-Lajeunesse, E.
Dive, V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
68.960
63.130
37.310
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C29 H32 Br N4 O10 P
707.463
N-{(2S)-3-[(S)-(4-bromophenyl)(hydroxy)phosphoryl]-2-[(3-phenyl-1,2-oxazol-5-yl)methyl]propanoyl}-L-alpha-glutamyl-L-al pha-glutamine
RXP470A
peptide-like
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
Y
129
N
C
Y
130
N
N
Y
131
N
C
Y
132
N
C
Y
133
N
N
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
S
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
N
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
S
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
O
Y
278
N
N
Y
279
N
O
N
280
N
C
N
281
S
C
N
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
N
292
N
C
N
293
N
P
N
294
N
O
N
295
N
O
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
N
300
N
BR
Y
301
N
C
Y
302
N
C
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
O
N
311
N
O
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
O
N
320
N
O
N
321
N
N
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
N
N
369
S
C
N
370
N
C
N
371
N
O
N
372
R
C
N
373
N
O
N
374
N
C
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
N
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
N
423
N
O
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
N
441
N
C
N
442
N
C
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
Y
265
N
doub
Y
266
N
sing
Y
267
N
sing
Y
268
N
doub
Y
269
N
doub
Y
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
Y
287
N
doub
Y
288
N
sing
Y
289
N
sing
N
290
N
sing
Y
291
N
doub
Y
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
doub
Y
296
N
sing
Y
297
N
doub
N
298
N
doub
N
299
N
sing
Y
300
N
doub
Y
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
doub
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
Y
383
N
doub
Y
384
N
sing
Y
385
N
sing
N
386
N
sing
Y
387
N
doub
Y
388
N
sing
Y
389
N
sing
N
390
N
sing
Y
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
Y
411
N
doub
Y
412
N
sing
Y
413
N
sing
N
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
56
1149
1159
10.1021/jm301574d
23343195
Molecular determinants of a selective matrix metalloprotease-12 inhibitor: insights from crystallography and thermodynamic studies.
2013
10.2210/pdb4gr3/pdb
pdb_00004gr3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Toroidal mirror
CCD
2009-09-20
ADSC QUANTUM 4
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.9334
1.0
ID14-2
ESRF
0.9334
SYNCHROTRON
ESRF BEAMLINE ID14-2
17615.670
Macrophage metalloelastase
3.4.24.65
catalytic domain (UNP residues 106-263)
F171D
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
40.078
CALCIUM ION
3
syn
non-polymer
707.463
N-{(2S)-3-[(S)-(4-bromophenyl)(hydroxy)phosphoryl]-2-[(3-phenyl-1,2-oxazol-5-yl)methyl]propanoyl}-L-alpha-glutamyl-L-al pha-glutamine
1
syn
non-polymer
18.015
water
295
nat
water
MME, Macrophage elastase, ME, hME, Matrix metalloproteinase-12, MMP-12
no
no
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
HME, MMP12
9606
Homo sapiens
511693
Escherichia coli
BL21
PLASMID
PET24A
1
2.31
46.64
VAPOR DIFFUSION, SITTING DROP
8.0
Protein: hMMP12(F171D) 643 microM. Reservoir: 18% PEG 10000, 0.2 M imidazole malate pH 8.0. Cryoprotectant: 27% PEG 8000, 15% monomethylPEG 550, 10% glycerol, 0.09 M Tris-HCl, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp
chem_comp_atom
chem_comp_bond
database_2
entity
pdbx_entity_nonpoly
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
Structure summary
1
0
2013-02-06
1
1
2013-05-22
1
2
2023-09-13
_chem_comp.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of the catalytic domain of Human MMP12 in complex with selective phosphinic inhibitor RXP470B
Crystal structure of the catalytic domain of Human MMP12 in complex with selective phosphinic inhibitor RXP470.1
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with L-glutamate motif inhibitor
Human MMP12 in complex with L-glutamate motif inhibitor
Human MMP12 in complex with L-glutamate motif inhibitor
RCSB
Y
RCSB
2012-08-24
REL
REL
ZN
ZINC ION
CA
CALCIUM ION
R45
N-{(2S)-3-[(S)-(4-bromophenyl)(hydroxy)phosphoryl]-2-[(3-phenyl-1,2-oxazol-5-yl)methyl]propanoyl}-L-alpha-glutamyl-L-al pha-glutamine
HOH
water
4GQL
PDB
experimental model
Enzyme inhibitor
N-{(2S)-3-[(S)-(4-BROMOPHENYL)(HYDROXY)PHOSPHORYL]-2-[(3-PHENYL-1,2-OXAZOL-5-YL)METHYL]PROPANOYL}-L-ALPHA-GLUTAMYL-L-ALPHA-GLUTAMINE
Peptide-like
ZN
500
2
ZN
ZN
301
A
ZN
501
2
ZN
ZN
302
A
CA
502
3
CA
CA
303
A
CA
503
3
CA
CA
304
A
CA
504
3
CA
CA
305
A
R45
1
4
R45
R45
306
A
HOH
1
5
HOH
HOH
401
A
HOH
2
5
HOH
HOH
402
A
HOH
3
5
HOH
HOH
403
A
HOH
4
5
HOH
HOH
404
A
HOH
5
5
HOH
HOH
405
A
HOH
6
5
HOH
HOH
406
A
HOH
7
5
HOH
HOH
407
A
HOH
8
5
HOH
HOH
408
A
HOH
9
5
HOH
HOH
409
A
HOH
10
5
HOH
HOH
410
A
HOH
11
5
HOH
HOH
411
A
HOH
12
5
HOH
HOH
412
A
HOH
13
5
HOH
HOH
413
A
HOH
14
5
HOH
HOH
414
A
HOH
15
5
HOH
HOH
415
A
HOH
16
5
HOH
HOH
416
A
HOH
17
5
HOH
HOH
417
A
HOH
18
5
HOH
HOH
418
A
HOH
19
5
HOH
HOH
419
A
HOH
20
5
HOH
HOH
420
A
HOH
21
5
HOH
HOH
421
A
HOH
22
5
HOH
HOH
422
A
HOH
23
5
HOH
HOH
423
A
HOH
24
5
HOH
HOH
424
A
HOH
25
5
HOH
HOH
425
A
HOH
26
5
HOH
HOH
426
A
HOH
27
5
HOH
HOH
427
A
HOH
28
5
HOH
HOH
428
A
HOH
29
5
HOH
HOH
429
A
HOH
30
5
HOH
HOH
430
A
HOH
31
5
HOH
HOH
431
A
HOH
32
5
HOH
HOH
432
A
HOH
33
5
HOH
HOH
433
A
HOH
34
5
HOH
HOH
434
A
HOH
35
5
HOH
HOH
435
A
HOH
36
5
HOH
HOH
436
A
HOH
37
5
HOH
HOH
437
A
HOH
38
5
HOH
HOH
438
A
HOH
39
5
HOH
HOH
439
A
HOH
40
5
HOH
HOH
440
A
HOH
41
5
HOH
HOH
441
A
HOH
42
5
HOH
HOH
442
A
HOH
43
5
HOH
HOH
443
A
HOH
44
5
HOH
HOH
444
A
HOH
45
5
HOH
HOH
445
A
HOH
46
5
HOH
HOH
446
A
HOH
47
5
HOH
HOH
447
A
HOH
48
5
HOH
HOH
448
A
HOH
49
5
HOH
HOH
449
A
HOH
50
5
HOH
HOH
450
A
HOH
51
5
HOH
HOH
451
A
HOH
52
5
HOH
HOH
452
A
HOH
53
5
HOH
HOH
453
A
HOH
54
5
HOH
HOH
454
A
HOH
55
5
HOH
HOH
455
A
HOH
56
5
HOH
HOH
456
A
HOH
57
5
HOH
HOH
457
A
HOH
58
5
HOH
HOH
458
A
HOH
59
5
HOH
HOH
459
A
HOH
60
5
HOH
HOH
460
A
HOH
61
5
HOH
HOH
461
A
HOH
62
5
HOH
HOH
462
A
HOH
63
5
HOH
HOH
463
A
HOH
64
5
HOH
HOH
464
A
HOH
65
5
HOH
HOH
465
A
HOH
66
5
HOH
HOH
466
A
HOH
67
5
HOH
HOH
467
A
HOH
68
5
HOH
HOH
468
A
HOH
69
5
HOH
HOH
469
A
HOH
70
5
HOH
HOH
470
A
HOH
71
5
HOH
HOH
471
A
HOH
72
5
HOH
HOH
472
A
HOH
73
5
HOH
HOH
473
A
HOH
74
5
HOH
HOH
474
A
HOH
75
5
HOH
HOH
475
A
HOH
76
5
HOH
HOH
476
A
HOH
77
5
HOH
HOH
477
A
HOH
78
5
HOH
HOH
478
A
HOH
79
5
HOH
HOH
479
A
HOH
80
5
HOH
HOH
480
A
HOH
82
5
HOH
HOH
481
A
HOH
83
5
HOH
HOH
482
A
HOH
84
5
HOH
HOH
483
A
HOH
85
5
HOH
HOH
484
A
HOH
86
5
HOH
HOH
485
A
HOH
87
5
HOH
HOH
486
A
HOH
88
5
HOH
HOH
487
A
HOH
89
5
HOH
HOH
488
A
HOH
90
5
HOH
HOH
489
A
HOH
91
5
HOH
HOH
490
A
HOH
92
5
HOH
HOH
491
A
HOH
93
5
HOH
HOH
492
A
HOH
94
5
HOH
HOH
493
A
HOH
95
5
HOH
HOH
494
A
HOH
96
5
HOH
HOH
495
A
HOH
97
5
HOH
HOH
496
A
HOH
98
5
HOH
HOH
497
A
HOH
99
5
HOH
HOH
498
A
HOH
100
5
HOH
HOH
499
A
HOH
101
5
HOH
HOH
500
A
HOH
102
5
HOH
HOH
501
A
HOH
103
5
HOH
HOH
502
A
HOH
104
5
HOH
HOH
503
A
HOH
105
5
HOH
HOH
504
A
HOH
106
5
HOH
HOH
505
A
HOH
107
5
HOH
HOH
506
A
HOH
108
5
HOH
HOH
507
A
HOH
109
5
HOH
HOH
508
A
HOH
110
5
HOH
HOH
509
A
HOH
111
5
HOH
HOH
510
A
HOH
112
5
HOH
HOH
511
A
HOH
113
5
HOH
HOH
512
A
HOH
114
5
HOH
HOH
513
A
HOH
115
5
HOH
HOH
514
A
HOH
116
5
HOH
HOH
515
A
HOH
117
5
HOH
HOH
516
A
HOH
118
5
HOH
HOH
517
A
HOH
119
5
HOH
HOH
518
A
HOH
120
5
HOH
HOH
519
A
HOH
121
5
HOH
HOH
520
A
HOH
122
5
HOH
HOH
521
A
HOH
123
5
HOH
HOH
522
A
HOH
124
5
HOH
HOH
523
A
HOH
125
5
HOH
HOH
524
A
HOH
126
5
HOH
HOH
525
A
HOH
127
5
HOH
HOH
526
A
HOH
128
5
HOH
HOH
527
A
HOH
129
5
HOH
HOH
528
A
HOH
130
5
HOH
HOH
529
A
HOH
131
5
HOH
HOH
530
A
HOH
132
5
HOH
HOH
531
A
HOH
133
5
HOH
HOH
532
A
HOH
134
5
HOH
HOH
533
A
HOH
135
5
HOH
HOH
534
A
HOH
136
5
HOH
HOH
535
A
HOH
137
5
HOH
HOH
536
A
HOH
138
5
HOH
HOH
537
A
HOH
139
5
HOH
HOH
538
A
HOH
140
5
HOH
HOH
539
A
HOH
141
5
HOH
HOH
540
A
HOH
142
5
HOH
HOH
541
A
HOH
143
5
HOH
HOH
542
A
HOH
144
5
HOH
HOH
543
A
HOH
145
5
HOH
HOH
544
A
HOH
146
5
HOH
HOH
545
A
HOH
147
5
HOH
HOH
546
A
HOH
148
5
HOH
HOH
547
A
HOH
149
5
HOH
HOH
548
A
HOH
150
5
HOH
HOH
549
A
HOH
151
5
HOH
HOH
550
A
HOH
152
5
HOH
HOH
551
A
HOH
153
5
HOH
HOH
552
A
HOH
154
5
HOH
HOH
553
A
HOH
155
5
HOH
HOH
554
A
HOH
156
5
HOH
HOH
555
A
HOH
157
5
HOH
HOH
556
A
HOH
158
5
HOH
HOH
557
A
HOH
159
5
HOH
HOH
558
A
HOH
160
5
HOH
HOH
559
A
HOH
161
5
HOH
HOH
560
A
HOH
162
5
HOH
HOH
561
A
HOH
163
5
HOH
HOH
562
A
HOH
164
5
HOH
HOH
563
A
HOH
165
5
HOH
HOH
564
A
HOH
166
5
HOH
HOH
565
A
HOH
167
5
HOH
HOH
566
A
HOH
168
5
HOH
HOH
567
A
HOH
169
5
HOH
HOH
568
A
HOH
170
5
HOH
HOH
569
A
HOH
171
5
HOH
HOH
570
A
HOH
172
5
HOH
HOH
571
A
HOH
173
5
HOH
HOH
572
A
HOH
174
5
HOH
HOH
573
A
HOH
175
5
HOH
HOH
574
A
HOH
177
5
HOH
HOH
575
A
HOH
178
5
HOH
HOH
576
A
HOH
179
5
HOH
HOH
577
A
HOH
180
5
HOH
HOH
578
A
HOH
181
5
HOH
HOH
579
A
HOH
182
5
HOH
HOH
580
A
HOH
183
5
HOH
HOH
581
A
HOH
184
5
HOH
HOH
582
A
HOH
185
5
HOH
HOH
583
A
HOH
186
5
HOH
HOH
584
A
HOH
187
5
HOH
HOH
585
A
HOH
188
5
HOH
HOH
586
A
HOH
189
5
HOH
HOH
587
A
HOH
190
5
HOH
HOH
588
A
HOH
191
5
HOH
HOH
589
A
HOH
192
5
HOH
HOH
590
A
HOH
193
5
HOH
HOH
591
A
HOH
194
5
HOH
HOH
592
A
HOH
195
5
HOH
HOH
593
A
HOH
196
5
HOH
HOH
594
A
HOH
197
5
HOH
HOH
595
A
HOH
198
5
HOH
HOH
596
A
HOH
199
5
HOH
HOH
597
A
HOH
200
5
HOH
HOH
598
A
HOH
201
5
HOH
HOH
599
A
HOH
202
5
HOH
HOH
600
A
HOH
203
5
HOH
HOH
601
A
HOH
204
5
HOH
HOH
602
A
HOH
205
5
HOH
HOH
603
A
HOH
206
5
HOH
HOH
604
A
HOH
207
5
HOH
HOH
605
A
HOH
208
5
HOH
HOH
606
A
HOH
209
5
HOH
HOH
607
A
HOH
210
5
HOH
HOH
608
A
HOH
211
5
HOH
HOH
609
A
HOH
212
5
HOH
HOH
610
A
HOH
213
5
HOH
HOH
611
A
HOH
214
5
HOH
HOH
612
A
HOH
215
5
HOH
HOH
613
A
HOH
216
5
HOH
HOH
614
A
HOH
217
5
HOH
HOH
615
A
HOH
218
5
HOH
HOH
616
A
HOH
219
5
HOH
HOH
617
A
HOH
220
5
HOH
HOH
618
A
HOH
221
5
HOH
HOH
619
A
HOH
222
5
HOH
HOH
620
A
HOH
223
5
HOH
HOH
621
A
HOH
224
5
HOH
HOH
622
A
HOH
225
5
HOH
HOH
623
A
HOH
226
5
HOH
HOH
624
A
HOH
227
5
HOH
HOH
625
A
HOH
228
5
HOH
HOH
626
A
HOH
229
5
HOH
HOH
627
A
HOH
230
5
HOH
HOH
628
A
HOH
231
5
HOH
HOH
629
A
HOH
232
5
HOH
HOH
630
A
HOH
233
5
HOH
HOH
631
A
HOH
234
5
HOH
HOH
632
A
HOH
235
5
HOH
HOH
633
A
HOH
236
5
HOH
HOH
634
A
HOH
237
5
HOH
HOH
635
A
HOH
238
5
HOH
HOH
636
A
HOH
239
5
HOH
HOH
637
A
HOH
240
5
HOH
HOH
638
A
HOH
241
5
HOH
HOH
639
A
HOH
242
5
HOH
HOH
640
A
HOH
243
5
HOH
HOH
641
A
HOH
244
5
HOH
HOH
642
A
HOH
245
5
HOH
HOH
643
A
HOH
246
5
HOH
HOH
644
A
HOH
247
5
HOH
HOH
645
A
HOH
248
5
HOH
HOH
646
A
HOH
249
5
HOH
HOH
647
A
HOH
250
5
HOH
HOH
648
A
HOH
251
5
HOH
HOH
649
A
HOH
253
5
HOH
HOH
650
A
HOH
254
5
HOH
HOH
651
A
HOH
255
5
HOH
HOH
652
A
HOH
256
5
HOH
HOH
653
A
HOH
257
5
HOH
HOH
654
A
HOH
258
5
HOH
HOH
655
A
HOH
259
5
HOH
HOH
656
A
HOH
260
5
HOH
HOH
657
A
HOH
261
5
HOH
HOH
658
A
HOH
262
5
HOH
HOH
659
A
HOH
263
5
HOH
HOH
660
A
HOH
264
5
HOH
HOH
661
A
HOH
265
5
HOH
HOH
662
A
HOH
266
5
HOH
HOH
663
A
HOH
267
5
HOH
HOH
664
A
HOH
268
5
HOH
HOH
665
A
HOH
269
5
HOH
HOH
666
A
HOH
270
5
HOH
HOH
667
A
HOH
271
5
HOH
HOH
668
A
HOH
272
5
HOH
HOH
669
A
HOH
273
5
HOH
HOH
670
A
HOH
274
5
HOH
HOH
671
A
HOH
275
5
HOH
HOH
672
A
HOH
276
5
HOH
HOH
673
A
HOH
277
5
HOH
HOH
674
A
HOH
278
5
HOH
HOH
675
A
HOH
279
5
HOH
HOH
676
A
HOH
280
5
HOH
HOH
677
A
HOH
281
5
HOH
HOH
678
A
HOH
282
5
HOH
HOH
679
A
HOH
283
5
HOH
HOH
680
A
HOH
284
5
HOH
HOH
681
A
HOH
285
5
HOH
HOH
682
A
HOH
286
5
HOH
HOH
683
A
HOH
287
5
HOH
HOH
684
A
HOH
288
5
HOH
HOH
685
A
HOH
289
5
HOH
HOH
686
A
HOH
291
5
HOH
HOH
687
A
HOH
292
5
HOH
HOH
688
A
HOH
293
5
HOH
HOH
689
A
HOH
294
5
HOH
HOH
690
A
HOH
295
5
HOH
HOH
691
A
HOH
296
5
HOH
HOH
692
A
HOH
297
5
HOH
HOH
693
A
HOH
298
5
HOH
HOH
694
A
HOH
299
5
HOH
HOH
695
A
MET
105
n
1
MET
105
A
GLY
106
n
2
GLY
106
A
PRO
107
n
3
PRO
107
A
VAL
108
n
4
VAL
108
A
TRP
109
n
5
TRP
109
A
ARG
110
n
6
ARG
110
A
LYS
111
n
7
LYS
111
A
HIS
112
n
8
HIS
112
A
TYR
113
n
9
TYR
113
A
ILE
114
n
10
ILE
114
A
THR
115
n
11
THR
115
A
TYR
116
n
12
TYR
116
A
ARG
117
n
13
ARG
117
A
ILE
118
n
14
ILE
118
A
ASN
119
n
15
ASN
119
A
ASN
120
n
16
ASN
120
A
TYR
121
n
17
TYR
121
A
THR
122
n
18
THR
122
A
PRO
123
n
19
PRO
123
A
ASP
124
n
20
ASP
124
A
MET
125
n
21
MET
125
A
ASN
126
n
22
ASN
126
A
ARG
127
n
23
ARG
127
A
GLU
128
n
24
GLU
128
A
ASP
129
n
25
ASP
129
A
VAL
130
n
26
VAL
130
A
ASP
131
n
27
ASP
131
A
TYR
132
n
28
TYR
132
A
ALA
133
n
29
ALA
133
A
ILE
134
n
30
ILE
134
A
ARG
135
n
31
ARG
135
A
LYS
136
n
32
LYS
136
A
ALA
137
n
33
ALA
137
A
PHE
138
n
34
PHE
138
A
GLN
139
n
35
GLN
139
A
VAL
140
n
36
VAL
140
A
TRP
141
n
37
TRP
141
A
SER
142
n
38
SER
142
A
ASN
143
n
39
ASN
143
A
VAL
144
n
40
VAL
144
A
THR
145
n
41
THR
145
A
PRO
146
n
42
PRO
146
A
LEU
147
n
43
LEU
147
A
LYS
148
n
44
LYS
148
A
PHE
149
n
45
PHE
149
A
SER
150
n
46
SER
150
A
LYS
151
n
47
LYS
151
A
ILE
152
n
48
ILE
152
A
ASN
153
n
49
ASN
153
A
THR
154
n
50
THR
154
A
GLY
155
n
51
GLY
155
A
MET
156
n
52
MET
156
A
ALA
157
n
53
ALA
157
A
ASP
158
n
54
ASP
158
A
ILE
159
n
55
ILE
159
A
LEU
160
n
56
LEU
160
A
VAL
161
n
57
VAL
161
A
VAL
162
n
58
VAL
162
A
PHE
163
n
59
PHE
163
A
ALA
164
n
60
ALA
164
A
ARG
165
n
61
ARG
165
A
GLY
166
n
62
GLY
166
A
ALA
167
n
63
ALA
167
A
HIS
168
n
64
HIS
168
A
GLY
169
n
65
GLY
169
A
ASP
170
n
66
ASP
170
A
ASP
171
n
67
ASP
171
A
HIS
172
n
68
HIS
172
A
ALA
173
n
69
ALA
173
A
PHE
174
n
70
PHE
174
A
ASP
175
n
71
ASP
175
A
GLY
176
n
72
GLY
176
A
LYS
177
n
73
LYS
177
A
GLY
178
n
74
GLY
178
A
GLY
179
n
75
GLY
179
A
ILE
180
n
76
ILE
180
A
LEU
181
n
77
LEU
181
A
ALA
182
n
78
ALA
182
A
HIS
183
n
79
HIS
183
A
ALA
184
n
80
ALA
184
A
PHE
185
n
81
PHE
185
A
GLY
186
n
82
GLY
186
A
PRO
187
n
83
PRO
187
A
GLY
188
n
84
GLY
188
A
SER
189
n
85
SER
189
A
GLY
190
n
86
GLY
190
A
ILE
191
n
87
ILE
191
A
GLY
192
n
88
GLY
192
A
GLY
193
n
89
GLY
193
A
ASP
194
n
90
ASP
194
A
ALA
195
n
91
ALA
195
A
HIS
196
n
92
HIS
196
A
PHE
197
n
93
PHE
197
A
ASP
198
n
94
ASP
198
A
GLU
199
n
95
GLU
199
A
ASP
200
n
96
ASP
200
A
GLU
201
n
97
GLU
201
A
PHE
202
n
98
PHE
202
A
TRP
203
n
99
TRP
203
A
THR
204
n
100
THR
204
A
THR
205
n
101
THR
205
A
HIS
206
n
102
HIS
206
A
SER
207
n
103
SER
207
A
GLY
208
n
104
GLY
208
A
GLY
209
n
105
GLY
209
A
THR
210
n
106
THR
210
A
ASN
211
n
107
ASN
211
A
LEU
212
n
108
LEU
212
A
PHE
213
n
109
PHE
213
A
LEU
214
n
110
LEU
214
A
THR
215
n
111
THR
215
A
ALA
216
n
112
ALA
216
A
VAL
217
n
113
VAL
217
A
HIS
218
n
114
HIS
218
A
GLU
219
n
115
GLU
219
A
ILE
220
n
116
ILE
220
A
GLY
221
n
117
GLY
221
A
HIS
222
n
118
HIS
222
A
SER
223
n
119
SER
223
A
LEU
224
n
120
LEU
224
A
GLY
225
n
121
GLY
225
A
LEU
226
n
122
LEU
226
A
GLY
227
n
123
GLY
227
A
HIS
228
n
124
HIS
228
A
SER
229
n
125
SER
229
A
SER
230
n
126
SER
230
A
ASP
231
n
127
ASP
231
A
PRO
232
n
128
PRO
232
A
LYS
233
n
129
LYS
233
A
ALA
234
n
130
ALA
234
A
VAL
235
n
131
VAL
235
A
MET
236
n
132
MET
236
A
PHE
237
n
133
PHE
237
A
PRO
238
n
134
PRO
238
A
THR
239
n
135
THR
239
A
TYR
240
n
136
TYR
240
A
LYS
241
n
137
LYS
241
A
TYR
242
n
138
TYR
242
A
VAL
243
n
139
VAL
243
A
ASP
244
n
140
ASP
244
A
ILE
245
n
141
ILE
245
A
ASN
246
n
142
ASN
246
A
THR
247
n
143
THR
247
A
PHE
248
n
144
PHE
248
A
ARG
249
n
145
ARG
249
A
LEU
250
n
146
LEU
250
A
SER
251
n
147
SER
251
A
ALA
252
n
148
ALA
252
A
ASP
253
n
149
ASP
253
A
ASP
254
n
150
ASP
254
A
ILE
255
n
151
ILE
255
A
ARG
256
n
152
ARG
256
A
GLY
257
n
153
GLY
257
A
ILE
258
n
154
ILE
258
A
GLN
259
n
155
GLN
259
A
SER
260
n
156
SER
260
A
LEU
261
n
157
LEU
261
A
TYR
262
n
158
TYR
262
A
GLY
263
n
159
GLY
263
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
ASP
124
A
OD1
ASP
20
1_555
51.4
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
137.6
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
161.9
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
87.7
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
86.5
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
79.1
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
76.0
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
121.8
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
75.1
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
117.8
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
425
H
O
HOH
1_555
96.4
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
425
H
O
HOH
1_555
82.3
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
425
H
O
HOH
1_555
108.7
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
425
H
O
HOH
1_555
161.6
A
GLU
201
A
O
GLU
97
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
425
H
O
HOH
1_555
80.6
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
437
H
O
HOH
1_555
138.9
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
437
H
O
HOH
1_555
87.9
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
437
H
O
HOH
1_555
80.0
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
437
H
O
HOH
1_555
84.2
A
GLU
201
A
O
GLU
97
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
437
H
O
HOH
1_555
142.1
A
HOH
425
H
O
HOH
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
437
H
O
HOH
1_555
81.0
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
190
A
O
GLY
86
1_555
165.4
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
96.3
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
90.2
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
90.9
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
102.5
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
86.9
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
417
H
O
HOH
1_555
87.5
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
417
H
O
HOH
1_555
83.4
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
417
H
O
HOH
1_555
166.8
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
417
H
O
HOH
1_555
105.6
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
424
H
O
HOH
1_555
83.9
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
424
H
O
HOH
1_555
85.0
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
424
H
O
HOH
1_555
77.0
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
424
H
O
HOH
1_555
162.4
A
HOH
417
H
O
HOH
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
424
H
O
HOH
1_555
90.9
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
A
ASP
170
A
OD1
ASP
66
1_555
110.5
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
79
1_555
121.5
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
79
1_555
110.3
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
107.3
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
95.5
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
108.5
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
176
A
O
GLY
72
1_555
86.8
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
83.9
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
90.7
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
92.4
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
178.4
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
90.5
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
99.4
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
86.6
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
175.7
A
ILE
180
A
O
ILE
76
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
92.2
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
171.0
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
94.3
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
87.2
A
ILE
180
A
O
ILE
76
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
86.8
A
ASP
198
A
OD1
ASP
94
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
89.6
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
222
A
NE2
HIS
118
1_555
103.4
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
112.0
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
104.1
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
A
R45
306
G
O3
R45
1_555
120.1
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
A
R45
306
G
O3
R45
1_555
119.1
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
301
B
ZN
ZN
1_555
A
R45
306
G
O3
R45
1_555
97.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
148
A
O
LYS
44
A
N
ILE
114
A
N
ILE
10
A
N
ARG
117
A
N
ARG
13
A
O
VAL
161
A
O
VAL
57
A
N
VAL
162
A
N
VAL
58
A
O
PHE
197
A
O
PHE
93
A
O
HIS
196
A
O
HIS
92
A
N
HIS
183
A
N
HIS
79
A
N
THR
204
A
N
THR
100
A
O
THR
210
A
O
THR
106
1
A
HOH
454
H
HOH
1
A
HOH
632
H
HOH
1
A
HIS
206
-145.00
-151.09
0.2158
0.1803
0.1821
1.494
46.565
1352
27049
27033
5.00
99.76
0.17
RANDOM
1
Isotropic
THROUGHOUT
2.00
-3
MOLECULAR REPLACEMENT
21.02
0.90
1.11
4GQL
ML
FLAT BULK SOLVENT MODEL
1.494
46.565
295
1591
50
0
1246
0.006
1372
1.091
1866
16.814
480
0.073
189
0.005
245
0.3122
0.2757
1.5476
131
2482
2482
98.00
0.2894
0.2477
1.6096
132
2511
2511
100.00
0.2741
0.2265
1.6828
134
2549
2549
100.00
0.2571
0.2140
1.7715
133
2540
2540
100.00
0.2598
0.1931
1.8825
135
2546
2546
100.00
0.2178
0.1814
2.0279
135
2567
2567
100.00
0.2163
0.1740
2.2320
134
2560
2560
100.00
0.2171
0.1702
2.5549
136
2567
2567
100.00
0.1870
0.1633
3.2188
137
2611
2611
100.00
0.1828
0.1590
46.5872
145
2748
2748
100.00
21.514
1.49
50
4GR3
27105
27049
0
-4
0.106
0.099
1
16.12
7.9
99.7
1.17
1.49
1.58
1.97
4273
1.1
1
6.98
98.9
0.728
1.58
1.69
3.26
4074
0.68
1
7.14
100.0
0.459
1.69
1.83
5.17
3787
0.43
1
7.15
100.0
0.246
1.83
2.00
9.41
3498
0.23
1
7.16
100.0
0.136
2.00
2.24
16.19
3185
0.127
1
7.15
100.0
0.092
2.24
2.58
22.85
2818
0.087
1
7.13
99.8
0.055
2.58
3.16
34.47
2431
0.052
1
7.05
99.7
0.035
3.16
4.46
51.86
1904
0.033
1
6.81
99.9
0.032
4.46
50
56.41
1135
0.030
1
6.16
99.4
data collection
DNA
phasing
MOLREP
refinement
PHENIX
(phenix.refine: 1.8_1069)
data reduction
XDS
data scaling
XDS
Crystal structure of the catalytic domain of Human MMP12 in complex with selective phosphinic inhibitor RXP470A
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
ASN
126
A
ASN
22
HELX_P
A
ASN
143
A
ASN
39
1
1
18
A
LEU
212
A
LEU
108
HELX_P
A
LEU
224
A
LEU
120
1
2
13
A
ASP
244
A
ASP
140
HELX_P
A
PHE
248
A
PHE
144
5
3
5
A
SER
251
A
SER
147
HELX_P
A
TYR
262
A
TYR
158
1
4
12
metalc
2.361
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.653
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.310
A
ASP
158
A
O
ASP
54
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.001
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
1.921
A
ASP
170
A
OD1
ASP
66
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.368
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.261
A
GLY
176
A
O
GLY
72
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.316
A
GLY
178
A
O
GLY
74
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.301
A
ILE
180
A
O
ILE
76
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.016
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.260
A
GLY
190
A
O
GLY
86
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.303
A
GLY
192
A
O
GLY
88
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.421
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.039
A
HIS
196
A
ND1
HIS
92
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.285
A
ASP
198
A
OD1
ASP
94
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.364
A
GLU
199
A
O
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.381
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.408
A
GLU
201
A
O
GLU
97
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.227
A
GLU
201
A
OE2
GLU
97
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.017
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.065
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
1.982
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
1.910
A
ZN
301
B
ZN
ZN
1_555
A
R45
306
G
O3
R45
1_555
metalc
2.364
A
CA
303
D
CA
CA
1_555
A
HOH
417
H
O
HOH
1_555
metalc
2.428
A
CA
303
D
CA
CA
1_555
A
HOH
424
H
O
HOH
1_555
metalc
2.430
A
CA
304
E
CA
CA
1_555
A
HOH
425
H
O
HOH
1_555
metalc
2.375
A
CA
304
E
CA
CA
1_555
A
HOH
437
H
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
potent selective phosphinic inhibitor, METZINCIN, Zinc protease, HYDROLASE-HYDROLASE INHIBITOR complex
MMP12_HUMAN
UNP
1
106
P39900
GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAF
GPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
106
263
4GR3
106
263
P39900
A
1
2
159
1
initiating methionine
MET
105
4GR3
A
P39900
UNP
1
1
PHE
engineered mutation
ASP
171
4GR3
A
P39900
UNP
171
67
5
2
parallel
parallel
parallel
anti-parallel
parallel
A
LYS
148
A
LYS
44
A
LYS
151
A
LYS
47
A
TYR
113
A
TYR
9
A
ILE
118
A
ILE
14
A
ILE
159
A
ILE
55
A
ALA
164
A
ALA
60
A
ALA
195
A
ALA
91
A
ASP
198
A
ASP
94
A
ALA
182
A
ALA
78
A
ALA
184
A
ALA
80
A
TRP
203
A
TRP
99
A
THR
204
A
THR
100
A
THR
210
A
THR
106
A
ASN
211
A
ASN
107
BINDING SITE FOR RESIDUE ZN A 301
A
ZN
301
Software
4
BINDING SITE FOR RESIDUE ZN A 302
A
ZN
302
Software
4
BINDING SITE FOR RESIDUE CA A 303
A
CA
303
Software
6
BINDING SITE FOR RESIDUE CA A 304
A
CA
304
Software
5
BINDING SITE FOR RESIDUE CA A 305
A
CA
305
Software
6
BINDING SITE FOR RESIDUE R45 A 306
A
R45
306
Software
29
A
HIS
218
A
HIS
114
4
1_555
A
HIS
222
A
HIS
118
4
1_555
A
HIS
228
A
HIS
124
4
1_555
A
R45
306
G
R45
4
1_555
A
HIS
168
A
HIS
64
4
1_555
A
ASP
170
A
ASP
66
4
1_555
A
HIS
183
A
HIS
79
4
1_555
A
HIS
196
A
HIS
92
4
1_555
A
ASP
158
A
ASP
54
6
1_555
A
GLY
190
A
GLY
86
6
1_555
A
GLY
192
A
GLY
88
6
1_555
A
ASP
194
A
ASP
90
6
1_555
A
HOH
417
H
HOH
6
1_555
A
HOH
424
H
HOH
6
1_555
A
ASP
124
A
ASP
20
5
1_555
A
GLU
199
A
GLU
95
5
1_555
A
GLU
201
A
GLU
97
5
1_555
A
HOH
425
H
HOH
5
1_555
A
HOH
437
H
HOH
5
1_555
A
ASP
175
A
ASP
71
6
1_555
A
GLY
176
A
GLY
72
6
1_555
A
GLY
178
A
GLY
74
6
1_555
A
ILE
180
A
ILE
76
6
1_555
A
ASP
198
A
ASP
94
6
1_555
A
GLU
201
A
GLU
97
6
1_555
A
THR
154
A
THR
50
29
3_555
A
GLY
155
A
GLY
51
29
3_555
A
HIS
172
A
HIS
68
29
1_555
A
GLY
179
A
GLY
75
29
1_555
A
ILE
180
A
ILE
76
29
1_555
A
LEU
181
A
LEU
77
29
1_555
A
ALA
182
A
ALA
78
29
1_555
A
HIS
183
A
HIS
79
29
1_555
A
THR
215
A
THR
111
29
1_555
A
HIS
218
A
HIS
114
29
1_555
A
GLU
219
A
GLU
115
29
1_555
A
HIS
222
A
HIS
118
29
1_555
A
HIS
228
A
HIS
124
29
1_555
A
VAL
235
A
VAL
131
29
1_555
A
PHE
237
A
PHE
133
29
1_555
A
PRO
238
A
PRO
134
29
1_555
A
THR
239
A
THR
135
29
1_555
A
TYR
240
A
TYR
136
29
1_555
A
ZN
301
B
ZN
29
1_555
A
HOH
401
H
HOH
29
1_555
A
HOH
422
H
HOH
29
1_555
A
HOH
484
H
HOH
29
1_555
A
HOH
497
H
HOH
29
1_555
A
HOH
509
H
HOH
29
1_555
A
HOH
512
H
HOH
29
1_555
A
HOH
574
H
HOH
29
1_555
A
HOH
578
H
HOH
29
1_555
A
HOH
584
H
HOH
29
2_565
A
HOH
657
H
HOH
29
2_565
18
P 21 21 2