0.014743
0.000000
0.000000
0.000000
0.016268
0.000000
0.000000
0.000000
0.029886
0.00000
0.00000
0.00000
Stura, E.A.
Vera, L.
Beau, F.
Devel, L.
Cassar-Lajeunesse, E.
Dive, V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
67.830
61.470
33.460
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C3 H5 N2 1
69.085
IMIDAZOLE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C25 H28 Br N4 O6 P
591.391
N-{(2S)-3-[(R)-(4-bromophenyl)(hydroxy)phosphoryl]-2-[(3-phenyl-1,2-oxazol-5-yl)methyl]propanoyl}-L-alanyl-L-alaninamid e
RXP470C
peptide-like
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
Y
129
N
C
Y
130
N
N
Y
131
N
C
Y
132
N
C
Y
133
N
N
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
S
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
Y
174
N
C
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
N
258
N
O
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
O
Y
288
N
N
Y
289
N
O
N
290
N
C
N
291
S
C
N
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
N
302
N
C
N
303
N
P
N
304
N
O
N
305
N
O
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
BR
Y
311
N
C
Y
312
N
C
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
N
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
R
C
N
371
N
O
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
N
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
N
421
N
O
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
N
439
N
C
N
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
Y
160
N
sing
Y
161
N
sing
N
162
N
sing
Y
163
N
doub
N
164
N
sing
Y
165
N
sing
N
166
N
sing
Y
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
Y
245
N
doub
Y
246
N
sing
Y
247
N
sing
N
248
N
sing
Y
249
N
doub
N
250
N
sing
Y
251
N
doub
N
252
N
sing
Y
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
Y
281
N
doub
Y
282
N
sing
N
283
N
sing
Y
284
N
sing
Y
285
N
doub
Y
286
N
doub
Y
287
N
sing
N
288
N
sing
Y
289
N
doub
N
290
N
sing
N
291
N
sing
Y
292
N
sing
Y
293
N
sing
Y
294
N
sing
N
295
N
doub
N
296
N
sing
Y
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
Y
306
N
doub
Y
307
N
sing
Y
308
N
sing
Y
309
N
doub
Y
310
N
doub
Y
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
doub
Y
386
N
sing
Y
387
N
sing
N
388
N
sing
Y
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
Y
409
N
doub
Y
410
N
sing
Y
411
N
sing
N
412
N
sing
Y
413
N
doub
N
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
56
1149
1159
10.1021/jm301574d
23343195
Molecular determinants of a selective matrix metalloprotease-12 inhibitor: insights from crystallography and thermodynamic studies.
2013
10.2210/pdb4gr8/pdb
pdb_00004gr8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2010-04-24
ADSC QUANTUM 315r
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.9765
1.0
ID14-4
ESRF
0.9765
SYNCHROTRON
ESRF BEAMLINE ID14-4
16830.721
Macrophage metalloelastase
3.4.24.65
catalytic domain (UNP residues 111-262)
F171D
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
40.078
CALCIUM ION
3
syn
non-polymer
591.391
N-{(2S)-3-[(R)-(4-bromophenyl)(hydroxy)phosphoryl]-2-[(3-phenyl-1,2-oxazol-5-yl)methyl]propanoyl}-L-alanyl-L-alaninamid e
1
syn
non-polymer
69.085
IMIDAZOLE
1
syn
non-polymer
18.015
water
197
nat
water
MME, Macrophage elastase, ME, hME, Matrix metalloproteinase-12, MMP-12
no
no
KHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSG
IGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLY
KHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAFGPGSG
IGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLY
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
N-TERMINAL MISSING RESIDUES (106-110) ARE DUE TO SELF-PROTEOLYSIS. C-terminal glycine 263 has also been proteolyzed.
sample
HME, MMP12
9606
Homo sapiens
511693
Escherichia coli
BL21
PLASMID
PET24A
1
2.07
40.64
VAPOR DIFFUSION, SITTING DROP
8.5
protein: hMMP12 F171D 848 microM. reservoir: 24% PEG 10000, 0.2 M imidazole malate pH 8.5. CRYOPROTECTANT: 27% PEG 8000, 15% monomethyl-PEG 550, 10% glycerol, 0.09 M Tris-HCl, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp
chem_comp_atom
chem_comp_bond
database_2
entity
pdbx_entity_nonpoly
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
Structure summary
1
0
2013-02-06
1
1
2013-05-22
1
2
2023-09-13
_chem_comp.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of the catalytic domain of Human MMP12 in complex with selective phosphinic inhibitor RXP470A
Crystal structure of the catalytic domain of Human MMP12 in complex with selective phosphinic inhibitor RXP470B
Crystal structure of the catalytic domain of Human MMP12 in complex with selective phosphinic inhibitor RXP470.1
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with non-zinc chelating inhibitor
Human MMP12 in complex with L-glutamate motif inhibitor
Human MMP12 in complex with L-glutamate motif inhibitor
Human MMP12 in complex with L-glutamate motif inhibitor
RCSB
Y
RCSB
2012-08-24
REL
REL
ZN
ZINC ION
CA
CALCIUM ION
R4C
N-{(2S)-3-[(R)-(4-bromophenyl)(hydroxy)phosphoryl]-2-[(3-phenyl-1,2-oxazol-5-yl)methyl]propanoyl}-L-alanyl-L-alaninamid e
IMD
IMIDAZOLE
HOH
water
4GQL
PDB
experimental model
Enzyme inhibitor
N-{(2S)-3-[(R)-(4-BROMOPHENYL)(HYDROXY)PHOSPHORYL]-2-[(3-PHENYL-1,2-OXAZOL-5-YL)METHYL]PROPANOYL}-L-ALANYL-L-ALANINAMIDE
Peptide-like
ZN
500
2
ZN
ZN
301
A
ZN
501
2
ZN
ZN
302
A
CA
502
3
CA
CA
303
A
CA
503
3
CA
CA
304
A
CA
504
3
CA
CA
305
A
R4C
1
4
R4C
R4C
306
A
IMD
1
5
IMD
IMD
307
A
HOH
1
6
HOH
HOH
401
A
HOH
2
6
HOH
HOH
402
A
HOH
3
6
HOH
HOH
403
A
HOH
4
6
HOH
HOH
404
A
HOH
5
6
HOH
HOH
405
A
HOH
6
6
HOH
HOH
406
A
HOH
7
6
HOH
HOH
407
A
HOH
8
6
HOH
HOH
408
A
HOH
9
6
HOH
HOH
409
A
HOH
10
6
HOH
HOH
410
A
HOH
11
6
HOH
HOH
411
A
HOH
12
6
HOH
HOH
412
A
HOH
13
6
HOH
HOH
413
A
HOH
14
6
HOH
HOH
414
A
HOH
15
6
HOH
HOH
415
A
HOH
16
6
HOH
HOH
416
A
HOH
17
6
HOH
HOH
417
A
HOH
18
6
HOH
HOH
418
A
HOH
19
6
HOH
HOH
419
A
HOH
20
6
HOH
HOH
420
A
HOH
21
6
HOH
HOH
421
A
HOH
22
6
HOH
HOH
422
A
HOH
23
6
HOH
HOH
423
A
HOH
24
6
HOH
HOH
424
A
HOH
25
6
HOH
HOH
425
A
HOH
26
6
HOH
HOH
426
A
HOH
27
6
HOH
HOH
427
A
HOH
28
6
HOH
HOH
428
A
HOH
29
6
HOH
HOH
429
A
HOH
30
6
HOH
HOH
430
A
HOH
31
6
HOH
HOH
431
A
HOH
32
6
HOH
HOH
432
A
HOH
33
6
HOH
HOH
433
A
HOH
34
6
HOH
HOH
434
A
HOH
35
6
HOH
HOH
435
A
HOH
36
6
HOH
HOH
436
A
HOH
37
6
HOH
HOH
437
A
HOH
38
6
HOH
HOH
438
A
HOH
39
6
HOH
HOH
439
A
HOH
40
6
HOH
HOH
440
A
HOH
41
6
HOH
HOH
441
A
HOH
42
6
HOH
HOH
442
A
HOH
43
6
HOH
HOH
443
A
HOH
44
6
HOH
HOH
444
A
HOH
45
6
HOH
HOH
445
A
HOH
46
6
HOH
HOH
446
A
HOH
47
6
HOH
HOH
447
A
HOH
48
6
HOH
HOH
448
A
HOH
49
6
HOH
HOH
449
A
HOH
50
6
HOH
HOH
450
A
HOH
51
6
HOH
HOH
451
A
HOH
52
6
HOH
HOH
452
A
HOH
53
6
HOH
HOH
453
A
HOH
54
6
HOH
HOH
454
A
HOH
55
6
HOH
HOH
455
A
HOH
56
6
HOH
HOH
456
A
HOH
57
6
HOH
HOH
457
A
HOH
58
6
HOH
HOH
458
A
HOH
60
6
HOH
HOH
459
A
HOH
61
6
HOH
HOH
460
A
HOH
63
6
HOH
HOH
461
A
HOH
64
6
HOH
HOH
462
A
HOH
65
6
HOH
HOH
463
A
HOH
66
6
HOH
HOH
464
A
HOH
67
6
HOH
HOH
465
A
HOH
68
6
HOH
HOH
466
A
HOH
69
6
HOH
HOH
467
A
HOH
70
6
HOH
HOH
468
A
HOH
71
6
HOH
HOH
469
A
HOH
72
6
HOH
HOH
470
A
HOH
73
6
HOH
HOH
471
A
HOH
74
6
HOH
HOH
472
A
HOH
75
6
HOH
HOH
473
A
HOH
76
6
HOH
HOH
474
A
HOH
77
6
HOH
HOH
475
A
HOH
78
6
HOH
HOH
476
A
HOH
79
6
HOH
HOH
477
A
HOH
80
6
HOH
HOH
478
A
HOH
81
6
HOH
HOH
479
A
HOH
82
6
HOH
HOH
480
A
HOH
83
6
HOH
HOH
481
A
HOH
84
6
HOH
HOH
482
A
HOH
85
6
HOH
HOH
483
A
HOH
86
6
HOH
HOH
484
A
HOH
87
6
HOH
HOH
485
A
HOH
88
6
HOH
HOH
486
A
HOH
89
6
HOH
HOH
487
A
HOH
91
6
HOH
HOH
488
A
HOH
92
6
HOH
HOH
489
A
HOH
93
6
HOH
HOH
490
A
HOH
94
6
HOH
HOH
491
A
HOH
95
6
HOH
HOH
492
A
HOH
96
6
HOH
HOH
493
A
HOH
98
6
HOH
HOH
494
A
HOH
99
6
HOH
HOH
495
A
HOH
100
6
HOH
HOH
496
A
HOH
101
6
HOH
HOH
497
A
HOH
102
6
HOH
HOH
498
A
HOH
103
6
HOH
HOH
499
A
HOH
104
6
HOH
HOH
500
A
HOH
105
6
HOH
HOH
501
A
HOH
106
6
HOH
HOH
502
A
HOH
107
6
HOH
HOH
503
A
HOH
108
6
HOH
HOH
504
A
HOH
109
6
HOH
HOH
505
A
HOH
110
6
HOH
HOH
506
A
HOH
111
6
HOH
HOH
507
A
HOH
112
6
HOH
HOH
508
A
HOH
113
6
HOH
HOH
509
A
HOH
114
6
HOH
HOH
510
A
HOH
115
6
HOH
HOH
511
A
HOH
116
6
HOH
HOH
512
A
HOH
117
6
HOH
HOH
513
A
HOH
118
6
HOH
HOH
514
A
HOH
119
6
HOH
HOH
515
A
HOH
120
6
HOH
HOH
516
A
HOH
121
6
HOH
HOH
517
A
HOH
123
6
HOH
HOH
518
A
HOH
124
6
HOH
HOH
519
A
HOH
125
6
HOH
HOH
520
A
HOH
126
6
HOH
HOH
521
A
HOH
127
6
HOH
HOH
522
A
HOH
128
6
HOH
HOH
523
A
HOH
129
6
HOH
HOH
524
A
HOH
130
6
HOH
HOH
525
A
HOH
131
6
HOH
HOH
526
A
HOH
132
6
HOH
HOH
527
A
HOH
133
6
HOH
HOH
528
A
HOH
134
6
HOH
HOH
529
A
HOH
135
6
HOH
HOH
530
A
HOH
136
6
HOH
HOH
531
A
HOH
137
6
HOH
HOH
532
A
HOH
138
6
HOH
HOH
533
A
HOH
139
6
HOH
HOH
534
A
HOH
140
6
HOH
HOH
535
A
HOH
141
6
HOH
HOH
536
A
HOH
142
6
HOH
HOH
537
A
HOH
143
6
HOH
HOH
538
A
HOH
144
6
HOH
HOH
539
A
HOH
145
6
HOH
HOH
540
A
HOH
146
6
HOH
HOH
541
A
HOH
147
6
HOH
HOH
542
A
HOH
148
6
HOH
HOH
543
A
HOH
149
6
HOH
HOH
544
A
HOH
150
6
HOH
HOH
545
A
HOH
151
6
HOH
HOH
546
A
HOH
152
6
HOH
HOH
547
A
HOH
153
6
HOH
HOH
548
A
HOH
154
6
HOH
HOH
549
A
HOH
155
6
HOH
HOH
550
A
HOH
156
6
HOH
HOH
551
A
HOH
157
6
HOH
HOH
552
A
HOH
158
6
HOH
HOH
553
A
HOH
159
6
HOH
HOH
554
A
HOH
160
6
HOH
HOH
555
A
HOH
162
6
HOH
HOH
556
A
HOH
163
6
HOH
HOH
557
A
HOH
164
6
HOH
HOH
558
A
HOH
165
6
HOH
HOH
559
A
HOH
166
6
HOH
HOH
560
A
HOH
167
6
HOH
HOH
561
A
HOH
168
6
HOH
HOH
562
A
HOH
169
6
HOH
HOH
563
A
HOH
170
6
HOH
HOH
564
A
HOH
172
6
HOH
HOH
565
A
HOH
173
6
HOH
HOH
566
A
HOH
174
6
HOH
HOH
567
A
HOH
175
6
HOH
HOH
568
A
HOH
176
6
HOH
HOH
569
A
HOH
177
6
HOH
HOH
570
A
HOH
178
6
HOH
HOH
571
A
HOH
179
6
HOH
HOH
572
A
HOH
180
6
HOH
HOH
573
A
HOH
181
6
HOH
HOH
574
A
HOH
182
6
HOH
HOH
575
A
HOH
183
6
HOH
HOH
576
A
HOH
185
6
HOH
HOH
577
A
HOH
186
6
HOH
HOH
578
A
HOH
187
6
HOH
HOH
579
A
HOH
188
6
HOH
HOH
580
A
HOH
189
6
HOH
HOH
581
A
HOH
190
6
HOH
HOH
582
A
HOH
191
6
HOH
HOH
583
A
HOH
192
6
HOH
HOH
584
A
HOH
193
6
HOH
HOH
585
A
HOH
194
6
HOH
HOH
586
A
HOH
195
6
HOH
HOH
587
A
HOH
196
6
HOH
HOH
588
A
HOH
197
6
HOH
HOH
589
A
HOH
198
6
HOH
HOH
590
A
HOH
199
6
HOH
HOH
591
A
HOH
200
6
HOH
HOH
592
A
HOH
201
6
HOH
HOH
593
A
HOH
202
6
HOH
HOH
594
A
HOH
203
6
HOH
HOH
595
A
HOH
204
6
HOH
HOH
596
A
HOH
205
6
HOH
HOH
597
A
LYS
111
n
1
LYS
111
A
HIS
112
n
2
HIS
112
A
TYR
113
n
3
TYR
113
A
ILE
114
n
4
ILE
114
A
THR
115
n
5
THR
115
A
TYR
116
n
6
TYR
116
A
ARG
117
n
7
ARG
117
A
ILE
118
n
8
ILE
118
A
ASN
119
n
9
ASN
119
A
ASN
120
n
10
ASN
120
A
TYR
121
n
11
TYR
121
A
THR
122
n
12
THR
122
A
PRO
123
n
13
PRO
123
A
ASP
124
n
14
ASP
124
A
MET
125
n
15
MET
125
A
ASN
126
n
16
ASN
126
A
ARG
127
n
17
ARG
127
A
GLU
128
n
18
GLU
128
A
ASP
129
n
19
ASP
129
A
VAL
130
n
20
VAL
130
A
ASP
131
n
21
ASP
131
A
TYR
132
n
22
TYR
132
A
ALA
133
n
23
ALA
133
A
ILE
134
n
24
ILE
134
A
ARG
135
n
25
ARG
135
A
LYS
136
n
26
LYS
136
A
ALA
137
n
27
ALA
137
A
PHE
138
n
28
PHE
138
A
GLN
139
n
29
GLN
139
A
VAL
140
n
30
VAL
140
A
TRP
141
n
31
TRP
141
A
SER
142
n
32
SER
142
A
ASN
143
n
33
ASN
143
A
VAL
144
n
34
VAL
144
A
THR
145
n
35
THR
145
A
PRO
146
n
36
PRO
146
A
LEU
147
n
37
LEU
147
A
LYS
148
n
38
LYS
148
A
PHE
149
n
39
PHE
149
A
SER
150
n
40
SER
150
A
LYS
151
n
41
LYS
151
A
ILE
152
n
42
ILE
152
A
ASN
153
n
43
ASN
153
A
THR
154
n
44
THR
154
A
GLY
155
n
45
GLY
155
A
MET
156
n
46
MET
156
A
ALA
157
n
47
ALA
157
A
ASP
158
n
48
ASP
158
A
ILE
159
n
49
ILE
159
A
LEU
160
n
50
LEU
160
A
VAL
161
n
51
VAL
161
A
VAL
162
n
52
VAL
162
A
PHE
163
n
53
PHE
163
A
ALA
164
n
54
ALA
164
A
ARG
165
n
55
ARG
165
A
GLY
166
n
56
GLY
166
A
ALA
167
n
57
ALA
167
A
HIS
168
n
58
HIS
168
A
GLY
169
n
59
GLY
169
A
ASP
170
n
60
ASP
170
A
ASP
171
n
61
ASP
171
A
HIS
172
n
62
HIS
172
A
ALA
173
n
63
ALA
173
A
PHE
174
n
64
PHE
174
A
ASP
175
n
65
ASP
175
A
GLY
176
n
66
GLY
176
A
LYS
177
n
67
LYS
177
A
GLY
178
n
68
GLY
178
A
GLY
179
n
69
GLY
179
A
ILE
180
n
70
ILE
180
A
LEU
181
n
71
LEU
181
A
ALA
182
n
72
ALA
182
A
HIS
183
n
73
HIS
183
A
ALA
184
n
74
ALA
184
A
PHE
185
n
75
PHE
185
A
GLY
186
n
76
GLY
186
A
PRO
187
n
77
PRO
187
A
GLY
188
n
78
GLY
188
A
SER
189
n
79
SER
189
A
GLY
190
n
80
GLY
190
A
ILE
191
n
81
ILE
191
A
GLY
192
n
82
GLY
192
A
GLY
193
n
83
GLY
193
A
ASP
194
n
84
ASP
194
A
ALA
195
n
85
ALA
195
A
HIS
196
n
86
HIS
196
A
PHE
197
n
87
PHE
197
A
ASP
198
n
88
ASP
198
A
GLU
199
n
89
GLU
199
A
ASP
200
n
90
ASP
200
A
GLU
201
n
91
GLU
201
A
PHE
202
n
92
PHE
202
A
TRP
203
n
93
TRP
203
A
THR
204
n
94
THR
204
A
THR
205
n
95
THR
205
A
HIS
206
n
96
HIS
206
A
SER
207
n
97
SER
207
A
GLY
208
n
98
GLY
208
A
GLY
209
n
99
GLY
209
A
THR
210
n
100
THR
210
A
ASN
211
n
101
ASN
211
A
LEU
212
n
102
LEU
212
A
PHE
213
n
103
PHE
213
A
LEU
214
n
104
LEU
214
A
THR
215
n
105
THR
215
A
ALA
216
n
106
ALA
216
A
VAL
217
n
107
VAL
217
A
HIS
218
n
108
HIS
218
A
GLU
219
n
109
GLU
219
A
ILE
220
n
110
ILE
220
A
GLY
221
n
111
GLY
221
A
HIS
222
n
112
HIS
222
A
SER
223
n
113
SER
223
A
LEU
224
n
114
LEU
224
A
GLY
225
n
115
GLY
225
A
LEU
226
n
116
LEU
226
A
GLY
227
n
117
GLY
227
A
HIS
228
n
118
HIS
228
A
SER
229
n
119
SER
229
A
SER
230
n
120
SER
230
A
ASP
231
n
121
ASP
231
A
PRO
232
n
122
PRO
232
A
LYS
233
n
123
LYS
233
A
ALA
234
n
124
ALA
234
A
VAL
235
n
125
VAL
235
A
MET
236
n
126
MET
236
A
PHE
237
n
127
PHE
237
A
PRO
238
n
128
PRO
238
A
THR
239
n
129
THR
239
A
TYR
240
n
130
TYR
240
A
LYS
241
n
131
LYS
241
A
TYR
242
n
132
TYR
242
A
VAL
243
n
133
VAL
243
A
ASP
244
n
134
ASP
244
A
ILE
245
n
135
ILE
245
A
ASN
246
n
136
ASN
246
A
THR
247
n
137
THR
247
A
PHE
248
n
138
PHE
248
A
ARG
249
n
139
ARG
249
A
LEU
250
n
140
LEU
250
A
SER
251
n
141
SER
251
A
ALA
252
n
142
ALA
252
A
ASP
253
n
143
ASP
253
A
ASP
254
n
144
ASP
254
A
ILE
255
n
145
ILE
255
A
ARG
256
n
146
ARG
256
A
GLY
257
n
147
GLY
257
A
ILE
258
n
148
ILE
258
A
GLN
259
n
149
GLN
259
A
SER
260
n
150
SER
260
A
LEU
261
n
151
LEU
261
A
TYR
262
n
152
TYR
262
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
124
A
OD2
ASP
14
1_555
A
CA
304
E
CA
CA
1_555
A
ASP
124
A
OD1
ASP
14
1_555
50.9
A
ASP
124
A
OD2
ASP
14
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
O
GLU
89
1_555
141.5
A
ASP
124
A
OD1
ASP
14
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
O
GLU
89
1_555
159.1
A
ASP
124
A
OD2
ASP
14
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
89
1_555
87.2
A
ASP
124
A
OD1
ASP
14
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
89
1_555
85.0
A
GLU
199
A
O
GLU
89
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
89
1_555
79.9
A
ASP
124
A
OD2
ASP
14
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
91
1_555
78.9
A
ASP
124
A
OD1
ASP
14
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
91
1_555
125.0
A
GLU
199
A
O
GLU
89
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
91
1_555
75.1
A
GLU
199
A
OE2
GLU
89
1_555
A
CA
304
E
CA
CA
1_555
A
GLU
201
A
O
GLU
91
1_555
117.1
A
ASP
124
A
OD2
ASP
14
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
420
I
O
HOH
1_555
136.2
A
ASP
124
A
OD1
ASP
14
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
420
I
O
HOH
1_555
85.4
A
GLU
199
A
O
GLU
89
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
420
I
O
HOH
1_555
79.7
A
GLU
199
A
OE2
GLU
89
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
420
I
O
HOH
1_555
87.6
A
GLU
201
A
O
GLU
91
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
420
I
O
HOH
1_555
140.2
A
ASP
124
A
OD2
ASP
14
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
426
I
O
HOH
1_555
96.1
A
ASP
124
A
OD1
ASP
14
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
426
I
O
HOH
1_555
84.6
A
GLU
199
A
O
GLU
89
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
426
I
O
HOH
1_555
106.5
A
GLU
199
A
OE2
GLU
89
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
426
I
O
HOH
1_555
163.4
A
GLU
201
A
O
GLU
91
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
426
I
O
HOH
1_555
79.5
A
HOH
420
I
O
HOH
1_555
A
CA
304
E
CA
CA
1_555
A
HOH
426
I
O
HOH
1_555
78.8
A
ASP
158
A
O
ASP
48
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
190
A
O
GLY
80
1_555
173.1
A
ASP
158
A
O
ASP
48
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
192
A
O
GLY
82
1_555
88.2
A
GLY
190
A
O
GLY
80
1_555
A
CA
303
D
CA
CA
1_555
A
GLY
192
A
O
GLY
82
1_555
91.1
A
ASP
158
A
O
ASP
48
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD1
ASP
84
1_555
90.5
A
GLY
190
A
O
GLY
80
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD1
ASP
84
1_555
96.4
A
GLY
192
A
O
GLY
82
1_555
A
CA
303
D
CA
CA
1_555
A
ASP
194
A
OD1
ASP
84
1_555
90.6
A
ASP
158
A
O
ASP
48
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
408
I
O
HOH
1_555
82.6
A
GLY
190
A
O
GLY
80
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
408
I
O
HOH
1_555
90.5
A
GLY
192
A
O
GLY
82
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
408
I
O
HOH
1_555
84.0
A
ASP
194
A
OD1
ASP
84
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
408
I
O
HOH
1_555
171.3
A
ASP
158
A
O
ASP
48
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
432
I
O
HOH
1_555
92.4
A
GLY
190
A
O
GLY
80
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
432
I
O
HOH
1_555
87.2
A
GLY
192
A
O
GLY
82
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
432
I
O
HOH
1_555
170.3
A
ASP
194
A
OD1
ASP
84
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
432
I
O
HOH
1_555
99.1
A
HOH
408
I
O
HOH
1_555
A
CA
303
D
CA
CA
1_555
A
HOH
432
I
O
HOH
1_555
86.5
A
HIS
168
A
NE2
HIS
58
1_555
A
ZN
302
C
ZN
ZN
1_555
A
ASP
170
A
OD2
ASP
60
1_555
105.9
A
HIS
168
A
NE2
HIS
58
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
73
1_555
115.6
A
ASP
170
A
OD2
ASP
60
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
73
1_555
119.6
A
HIS
168
A
NE2
HIS
58
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
86
1_555
106.4
A
ASP
170
A
OD2
ASP
60
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
86
1_555
93.7
A
HIS
183
A
NE2
HIS
73
1_555
A
ZN
302
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
86
1_555
112.9
A
ASP
175
A
OD1
ASP
65
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
176
A
O
GLY
66
1_555
90.4
A
ASP
175
A
OD1
ASP
65
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
178
A
O
GLY
68
1_555
90.5
A
GLY
176
A
O
GLY
66
1_555
A
CA
305
F
CA
CA
1_555
A
GLY
178
A
O
GLY
68
1_555
85.3
A
ASP
175
A
OD1
ASP
65
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
70
1_555
86.0
A
GLY
176
A
O
GLY
66
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
70
1_555
175.1
A
GLY
178
A
O
GLY
68
1_555
A
CA
305
F
CA
CA
1_555
A
ILE
180
A
O
ILE
70
1_555
91.4
A
ASP
175
A
OD1
ASP
65
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD2
ASP
88
1_555
96.6
A
GLY
176
A
O
GLY
66
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD2
ASP
88
1_555
88.0
A
GLY
178
A
O
GLY
68
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD2
ASP
88
1_555
170.2
A
ILE
180
A
O
ILE
70
1_555
A
CA
305
F
CA
CA
1_555
A
ASP
198
A
OD2
ASP
88
1_555
95.7
A
ASP
175
A
OD1
ASP
65
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
91
1_555
175.3
A
GLY
176
A
O
GLY
66
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
91
1_555
92.2
A
GLY
178
A
O
GLY
68
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
91
1_555
85.9
A
ILE
180
A
O
ILE
70
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
91
1_555
91.1
A
ASP
198
A
OD2
ASP
88
1_555
A
CA
305
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
91
1_555
87.3
A
HIS
218
A
NE2
HIS
108
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
222
A
NE2
HIS
112
1_555
102.4
A
HIS
218
A
NE2
HIS
108
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
118
1_555
116.6
A
HIS
222
A
NE2
HIS
112
1_555
A
ZN
301
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
118
1_555
101.0
A
HIS
218
A
NE2
HIS
108
1_555
A
ZN
301
B
ZN
ZN
1_555
A
R4C
306
G
O3
R4C
1_555
118.4
A
HIS
222
A
NE2
HIS
112
1_555
A
ZN
301
B
ZN
ZN
1_555
A
R4C
306
G
O3
R4C
1_555
121.1
A
HIS
228
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
A
R4C
306
G
O3
R4C
1_555
96.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
148
A
O
LYS
38
A
N
ILE
114
A
N
ILE
4
A
N
ARG
117
A
N
ARG
7
A
O
VAL
161
A
O
VAL
51
A
N
VAL
162
A
N
VAL
52
A
O
PHE
197
A
O
PHE
87
A
O
HIS
196
A
O
HIS
86
A
N
HIS
183
A
N
HIS
73
A
N
THR
204
A
N
THR
94
A
O
THR
210
A
O
THR
100
1
A
HIS
168
-141.82
29.14
1
A
HIS
206
-120.79
-163.78
0.2027
0.1767
0.1780
1.299
30.008
1753
35086
35069
5.00
99.37
0.09
RANDOM
1
Isotropic
THROUGHOUT
1.99
-3
MOLECULAR REPLACEMENT
19.25
0.90
1.11
4GQL
ML
FLAT BULK SOLVENT MODEL
1.299
30.008
197
1435
47
0
1191
0.006
1338
1.154
1824
16.521
463
0.077
185
0.006
244
0.2790
0.2661
1.3339
125
2411
2411
96.00
0.2661
0.2353
1.3732
134
2546
2546
100.00
0.2398
0.2194
1.4175
133
2526
2526
100.00
0.2395
0.2080
1.4681
134
2540
2540
100.00
0.2421
0.2057
1.5269
135
2553
2553
100.00
0.2034
0.1850
1.5964
134
2556
2556
100.00
0.2067
0.1778
1.6806
135
2554
2554
100.00
0.1830
0.1794
1.7859
134
2547
2547
100.00
0.1999
0.1658
1.9237
135
2569
2569
100.00
0.1970
0.1650
2.1173
137
2598
2598
100.00
0.1913
0.1697
2.4235
136
2593
2593
100.00
0.2091
0.1720
3.0529
139
2635
2635
100.00
0.1789
0.1577
30.0156
142
2688
2688
97.00
17.669
1.30
50
4GR8
35305
35086
0
-4
0.098
0.091
1
12.84
7.56
99.4
0.86
1.30
1.38
2.47
5602
0.798
1
7.16
97.7
0.57
1.38
1.47
3.90
5297
0.541
1
7.78
99.9
0.378
1.47
1.59
5.94
4951
0.353
1
7.80
100.0
0.252
1.59
1.74
8.69
4545
0.236
1
7.84
100.0
0.155
1.74
1.95
13.85
4158
0.144
1
7.75
99.9
0.097
1.95
2.25
21.28
3665
0.090
1
7.59
99.8
0.075
2.25
2.75
26.35
3137
0.070
1
7.38
99.9
0.053
2.75
3.88
32.40
2489
0.049
1
7.11
99.9
0.043
3.88
50
35.30
1461
0.040
1
6.96
94.9
data collection
CBASS
phasing
MOLREP
refinement
PHENIX
(phenix.refine: 1.8_1069)
data reduction
XDS
data scaling
XDS
Crystal structure of the catalytic domain of Human MMP12 in complex with selective phosphinic inhibitor RXP470C
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
ASN
126
A
ASN
16
HELX_P
A
ASN
143
A
ASN
33
1
1
18
A
LEU
212
A
LEU
102
HELX_P
A
LEU
224
A
LEU
114
1
2
13
A
ASP
244
A
ASP
134
HELX_P
A
PHE
248
A
PHE
138
5
3
5
A
SER
251
A
SER
141
HELX_P
A
TYR
262
A
TYR
152
1
4
12
metalc
2.442
A
ASP
124
A
OD2
ASP
14
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.633
A
ASP
124
A
OD1
ASP
14
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.359
A
ASP
158
A
O
ASP
48
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.006
A
HIS
168
A
NE2
HIS
58
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
1.930
A
ASP
170
A
OD2
ASP
60
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.343
A
ASP
175
A
OD1
ASP
65
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.317
A
GLY
176
A
O
GLY
66
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.377
A
GLY
178
A
O
GLY
68
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.313
A
ILE
180
A
O
ILE
70
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.025
A
HIS
183
A
NE2
HIS
73
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.323
A
GLY
190
A
O
GLY
80
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.339
A
GLY
192
A
O
GLY
82
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.340
A
ASP
194
A
OD1
ASP
84
1_555
A
CA
303
D
CA
CA
1_555
metalc
2.038
A
HIS
196
A
ND1
HIS
86
1_555
A
ZN
302
C
ZN
ZN
1_555
metalc
2.279
A
ASP
198
A
OD2
ASP
88
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.356
A
GLU
199
A
O
GLU
89
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.412
A
GLU
199
A
OE2
GLU
89
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.378
A
GLU
201
A
O
GLU
91
1_555
A
CA
304
E
CA
CA
1_555
metalc
2.273
A
GLU
201
A
OE2
GLU
91
1_555
A
CA
305
F
CA
CA
1_555
metalc
2.025
A
HIS
218
A
NE2
HIS
108
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.054
A
HIS
222
A
NE2
HIS
112
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
2.034
A
HIS
228
A
NE2
HIS
118
1_555
A
ZN
301
B
ZN
ZN
1_555
metalc
1.921
A
ZN
301
B
ZN
ZN
1_555
A
R4C
306
G
O3
R4C
1_555
metalc
2.308
A
CA
303
D
CA
CA
1_555
A
HOH
408
I
O
HOH
1_555
metalc
2.317
A
CA
303
D
CA
CA
1_555
A
HOH
432
I
O
HOH
1_555
metalc
2.401
A
CA
304
E
CA
CA
1_555
A
HOH
420
I
O
HOH
1_555
metalc
2.381
A
CA
304
E
CA
CA
1_555
A
HOH
426
I
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
potent selective phosphinic inhibitor, METZINCIN, Zinc protease, HYDROLASE-HYDROLASE INHIBITOR complex
MMP12_HUMAN
UNP
1
111
P39900
KHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAFGPGSG
IGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLY
111
262
4GR8
111
262
P39900
A
1
1
152
1
PHE
engineered mutation
ASP
171
4GR8
A
P39900
UNP
171
61
5
2
parallel
parallel
parallel
anti-parallel
parallel
A
LYS
148
A
LYS
38
A
LYS
151
A
LYS
41
A
TYR
113
A
TYR
3
A
ILE
118
A
ILE
8
A
ILE
159
A
ILE
49
A
ALA
164
A
ALA
54
A
ALA
195
A
ALA
85
A
ASP
198
A
ASP
88
A
ALA
182
A
ALA
72
A
ALA
184
A
ALA
74
A
TRP
203
A
TRP
93
A
THR
204
A
THR
94
A
THR
210
A
THR
100
A
ASN
211
A
ASN
101
BINDING SITE FOR RESIDUE ZN A 301
A
ZN
301
Software
4
BINDING SITE FOR RESIDUE ZN A 302
A
ZN
302
Software
4
BINDING SITE FOR RESIDUE CA A 303
A
CA
303
Software
6
BINDING SITE FOR RESIDUE CA A 304
A
CA
304
Software
5
BINDING SITE FOR RESIDUE CA A 305
A
CA
305
Software
6
BINDING SITE FOR RESIDUE R4C A 306
A
R4C
306
Software
23
BINDING SITE FOR RESIDUE IMD A 307
A
IMD
307
Software
5
A
HIS
218
A
HIS
108
4
1_555
A
HIS
222
A
HIS
112
4
1_555
A
HIS
228
A
HIS
118
4
1_555
A
R4C
306
G
R4C
4
1_555
A
HIS
168
A
HIS
58
4
1_555
A
ASP
170
A
ASP
60
4
1_555
A
HIS
183
A
HIS
73
4
1_555
A
HIS
196
A
HIS
86
4
1_555
A
ASP
158
A
ASP
48
6
1_555
A
GLY
190
A
GLY
80
6
1_555
A
GLY
192
A
GLY
82
6
1_555
A
ASP
194
A
ASP
84
6
1_555
A
HOH
408
I
HOH
6
1_555
A
HOH
432
I
HOH
6
1_555
A
ASP
124
A
ASP
14
5
1_555
A
GLU
199
A
GLU
89
5
1_555
A
GLU
201
A
GLU
91
5
1_555
A
HOH
420
I
HOH
5
1_555
A
HOH
426
I
HOH
5
1_555
A
ASP
175
A
ASP
65
6
1_555
A
GLY
176
A
GLY
66
6
1_555
A
GLY
178
A
GLY
68
6
1_555
A
ILE
180
A
ILE
70
6
1_555
A
ASP
198
A
ASP
88
6
1_555
A
GLU
201
A
GLU
91
6
1_555
A
THR
154
A
THR
44
23
3_455
A
GLY
179
A
GLY
69
23
1_555
A
LEU
181
A
LEU
71
23
1_555
A
ALA
182
A
ALA
72
23
1_555
A
HIS
183
A
HIS
73
23
1_555
A
THR
215
A
THR
105
23
1_555
A
HIS
218
A
HIS
108
23
1_555
A
GLU
219
A
GLU
109
23
1_555
A
HIS
222
A
HIS
112
23
1_555
A
HIS
228
A
HIS
118
23
1_555
A
VAL
235
A
VAL
125
23
1_555
A
PHE
237
A
PHE
127
23
2_565
A
PHE
237
A
PHE
127
23
1_555
A
PRO
238
A
PRO
128
23
1_555
A
THR
239
A
THR
129
23
1_555
A
TYR
240
A
TYR
130
23
1_555
A
ZN
301
B
ZN
23
1_555
A
IMD
307
H
IMD
23
1_555
A
HOH
407
I
HOH
23
1_555
A
HOH
409
I
HOH
23
3_455
A
HOH
423
I
HOH
23
1_555
A
HOH
528
I
HOH
23
1_555
A
HOH
532
I
HOH
23
1_555
A
HIS
172
A
HIS
62
5
1_555
A
HIS
183
A
HIS
73
5
1_555
A
ALA
184
A
ALA
74
5
1_555
A
PHE
185
A
PHE
75
5
1_555
A
R4C
306
G
R4C
5
1_555
18
P 21 21 2