0.011830
0.000000
0.000000
0.000000
0.011830
0.000000
0.000000
0.000000
0.012462
0.00000
0.00000
0.00000
Ullah, A.
Souza, T.C.A.B.
Zanphorlin, L.M.
Mariutti, R.
Sanata, S.V.
Murakami, M.T.
Arni, R.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
84.533
84.533
80.243
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
22
128
132
10.1002/pro.2189
23139169
Crystal structure of Jararacussin-I: The highly negatively charged catalytic interface contributes to macromolecular selectivity in snake venom thrombin-like enzymes.
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.458
1.0
W01B-MX2
LNLS
1.458
SYNCHROTRON
LNLS BEAMLINE W01B-MX2
25183.447
Thrombin-like enzyme BjussuSP-1
3.4.21.-
1
nat
polymer
18.015
water
7
nat
water
SVTLE BjussuSP-1, Fibrinogen-clotting enzyme, Snake venom serine protease 1, SVSP, Thrombin-like enzyme BjussuSP-I, SVTLE BjussuSP-I
no
no
VLGGDECDINEHPFLAFLYSHGYFCGLTLINQEWVVTAAHCDSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNMSE
VLDKDIMLIKLDKPISNSKHIAPLSLPSNPPSVGSVCRIMGWGSITIPNETYPDVPYCANINLVDYEVCQGAYNGLPAKT
TLCAGVLEGGKDTCVGDSGGPLICNGQFQGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP
VLGGDECDINEHPFLAFLYSHGYFCGLTLINQEWVVTAAHCDSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNMSE
VLDKDIMLIKLDKPISNSKHIAPLSLPSNPPSVGSVCRIMGWGSITIPNETYPDVPYCANINLVDYEVCQGAYNGLPAKT
TLCAGVLEGGKDTCVGDSGGPLICNGQFQGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Jararacussu
sample
8726
Bothrops jararacussu
1
2.85
56.78
VAPOR DIFFUSION, HANGING DROP
6.7
0.1 M MES pH 6.7 and 30% PEG 550 MME, VAPOR DIFFUSION, HANGING DROP, temperature 291K
291
repository
Initial release
Database references
1
0
2012-12-12
1
1
2013-01-02
RCSB
Y
RCSB
2012-08-28
REL
REL
HOH
water
HOH
1
2
HOH
HOH
301
A
HOH
2
2
HOH
HOH
302
A
HOH
3
2
HOH
HOH
303
A
HOH
4
2
HOH
HOH
304
A
HOH
5
2
HOH
HOH
305
A
HOH
6
2
HOH
HOH
306
A
HOH
7
2
HOH
HOH
307
A
VAL
1
n
1
VAL
1
A
LEU
2
n
2
LEU
2
A
GLY
3
n
3
GLY
3
A
GLY
4
n
4
GLY
4
A
ASP
5
n
5
ASP
5
A
GLU
6
n
6
GLU
6
A
CYS
7
n
7
CYS
7
A
ASP
8
n
8
ASP
8
A
ILE
9
n
9
ILE
9
A
ASN
10
n
10
ASN
10
A
GLU
11
n
11
GLU
11
A
HIS
12
n
12
HIS
12
A
PRO
13
n
13
PRO
13
A
PHE
14
n
14
PHE
14
A
LEU
15
n
15
LEU
15
A
ALA
16
n
16
ALA
16
A
PHE
17
n
17
PHE
17
A
LEU
18
n
18
LEU
18
A
TYR
19
n
19
TYR
19
A
SER
20
n
20
SER
20
A
HIS
21
n
21
HIS
21
A
GLY
22
n
22
GLY
22
A
TYR
23
n
23
TYR
23
A
PHE
24
n
24
PHE
24
A
CYS
25
n
25
CYS
25
A
GLY
26
n
26
GLY
26
A
LEU
27
n
27
LEU
27
A
THR
28
n
28
THR
28
A
LEU
29
n
29
LEU
29
A
ILE
30
n
30
ILE
30
A
ASN
31
n
31
ASN
31
A
GLN
32
n
32
GLN
32
A
GLU
33
n
33
GLU
33
A
TRP
34
n
34
TRP
34
A
VAL
35
n
35
VAL
35
A
VAL
36
n
36
VAL
36
A
THR
37
n
37
THR
37
A
ALA
38
n
38
ALA
38
A
ALA
39
n
39
ALA
39
A
HIS
40
n
40
HIS
40
A
CYS
41
n
41
CYS
41
A
ASP
42
n
42
ASP
42
A
SER
43
n
43
SER
43
A
THR
44
n
44
THR
44
A
ASN
45
n
45
ASN
45
A
PHE
46
n
46
PHE
46
A
GLN
47
n
47
GLN
47
A
MET
48
n
48
MET
48
A
GLN
49
n
49
GLN
49
A
LEU
50
n
50
LEU
50
A
GLY
51
n
51
GLY
51
A
VAL
52
n
52
VAL
52
A
HIS
53
n
53
HIS
53
A
SER
54
n
54
SER
54
A
LYS
55
n
55
LYS
55
A
LYS
56
n
56
LYS
56
A
VAL
57
n
57
VAL
57
A
LEU
58
n
58
LEU
58
A
ASN
59
n
59
ASN
59
A
GLU
60
n
60
GLU
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
GLN
63
n
63
GLN
63
A
THR
64
n
64
THR
64
A
ARG
65
n
65
ARG
65
A
ASN
66
n
66
ASN
66
A
PRO
67
n
67
PRO
67
A
LYS
68
n
68
LYS
68
A
GLU
69
n
69
GLU
69
A
LYS
70
n
70
LYS
70
A
PHE
71
n
71
PHE
71
A
ILE
72
n
72
ILE
72
A
CYS
73
n
73
CYS
73
A
PRO
74
n
74
PRO
74
A
ASN
75
n
75
ASN
75
A
LYS
76
n
76
LYS
76
A
ASN
77
n
77
ASN
77
A
MET
78
n
78
MET
78
A
SER
79
n
79
SER
79
A
GLU
80
n
80
GLU
80
A
VAL
81
n
81
VAL
81
A
LEU
82
n
82
LEU
82
A
ASP
83
n
83
ASP
83
A
LYS
84
n
84
LYS
84
A
ASP
85
n
85
ASP
85
A
ILE
86
n
86
ILE
86
A
MET
87
n
87
MET
87
A
LEU
88
n
88
LEU
88
A
ILE
89
n
89
ILE
89
A
LYS
90
n
90
LYS
90
A
LEU
91
n
91
LEU
91
A
ASP
92
n
92
ASP
92
A
LYS
93
n
93
LYS
93
A
PRO
94
n
94
PRO
94
A
ILE
95
n
95
ILE
95
A
SER
96
n
96
SER
96
A
ASN
97
n
97
ASN
97
A
SER
98
n
98
SER
98
A
LYS
99
n
99
LYS
99
A
HIS
100
n
100
HIS
100
A
ILE
101
n
101
ILE
101
A
ALA
102
n
102
ALA
102
A
PRO
103
n
103
PRO
103
A
LEU
104
n
104
LEU
104
A
SER
105
n
105
SER
105
A
LEU
106
n
106
LEU
106
A
PRO
107
n
107
PRO
107
A
SER
108
n
108
SER
108
A
ASN
109
n
109
ASN
109
A
PRO
110
n
110
PRO
110
A
PRO
111
n
111
PRO
111
A
SER
112
n
112
SER
112
A
VAL
113
n
113
VAL
113
A
GLY
114
n
114
GLY
114
A
SER
115
n
115
SER
115
A
VAL
116
n
116
VAL
116
A
CYS
117
n
117
CYS
117
A
ARG
118
n
118
ARG
118
A
ILE
119
n
119
ILE
119
A
MET
120
n
120
MET
120
A
GLY
121
n
121
GLY
121
A
TRP
122
n
122
TRP
122
A
GLY
123
n
123
GLY
123
A
SER
124
n
124
SER
124
A
ILE
125
n
125
ILE
125
A
THR
126
n
126
THR
126
A
ILE
127
n
127
ILE
127
A
PRO
128
n
128
PRO
128
A
ASN
129
n
129
ASN
129
A
GLU
130
n
130
GLU
130
A
THR
131
n
131
THR
131
A
TYR
132
n
132
TYR
132
A
PRO
133
n
133
PRO
133
A
ASP
134
n
134
ASP
134
A
VAL
135
n
135
VAL
135
A
PRO
136
n
136
PRO
136
A
TYR
137
n
137
TYR
137
A
CYS
138
n
138
CYS
138
A
ALA
139
n
139
ALA
139
A
ASN
140
n
140
ASN
140
A
ILE
141
n
141
ILE
141
A
ASN
142
n
142
ASN
142
A
LEU
143
n
143
LEU
143
A
VAL
144
n
144
VAL
144
A
ASP
145
n
145
ASP
145
A
TYR
146
n
146
TYR
146
A
GLU
147
n
147
GLU
147
A
VAL
148
n
148
VAL
148
A
CYS
149
n
149
CYS
149
A
GLN
150
n
150
GLN
150
A
GLY
151
n
151
GLY
151
A
ALA
152
n
152
ALA
152
A
TYR
153
n
153
TYR
153
A
ASN
154
n
154
ASN
154
A
GLY
155
n
155
GLY
155
A
LEU
156
n
156
LEU
156
A
PRO
157
n
157
PRO
157
A
ALA
158
n
158
ALA
158
A
LYS
159
n
159
LYS
159
A
THR
160
n
160
THR
160
A
THR
161
n
161
THR
161
A
LEU
162
n
162
LEU
162
A
CYS
163
n
163
CYS
163
A
ALA
164
n
164
ALA
164
A
GLY
165
n
165
GLY
165
A
VAL
166
n
166
VAL
166
A
LEU
167
n
167
LEU
167
A
GLU
168
n
168
GLU
168
A
GLY
169
n
169
GLY
169
A
GLY
170
n
170
GLY
170
A
LYS
171
n
171
LYS
171
A
ASP
172
n
172
ASP
172
A
THR
173
n
173
THR
173
A
CYS
174
n
174
CYS
174
A
VAL
175
n
175
VAL
175
A
GLY
176
n
176
GLY
176
A
ASP
177
n
177
ASP
177
A
SER
178
n
178
SER
178
A
GLY
179
n
179
GLY
179
A
GLY
180
n
180
GLY
180
A
PRO
181
n
181
PRO
181
A
LEU
182
n
182
LEU
182
A
ILE
183
n
183
ILE
183
A
CYS
184
n
184
CYS
184
A
ASN
185
n
185
ASN
185
A
GLY
186
n
186
GLY
186
A
GLN
187
n
187
GLN
187
A
PHE
188
n
188
PHE
188
A
GLN
189
n
189
GLN
189
A
GLY
190
n
190
GLY
190
A
ILE
191
n
191
ILE
191
A
VAL
192
n
192
VAL
192
A
SER
193
n
193
SER
193
A
TYR
194
n
194
TYR
194
A
GLY
195
n
195
GLY
195
A
ALA
196
n
196
ALA
196
A
HIS
197
n
197
HIS
197
A
SER
198
n
198
SER
198
A
CYS
199
n
199
CYS
199
A
GLY
200
n
200
GLY
200
A
GLN
201
n
201
GLN
201
A
GLY
202
n
202
GLY
202
A
PRO
203
n
203
PRO
203
A
LYS
204
n
204
LYS
204
A
PRO
205
n
205
PRO
205
A
GLY
206
n
206
GLY
206
A
ILE
207
n
207
ILE
207
A
TYR
208
n
208
TYR
208
A
THR
209
n
209
THR
209
A
ASN
210
n
210
ASN
210
A
VAL
211
n
211
VAL
211
A
PHE
212
n
212
PHE
212
A
ASP
213
n
213
ASP
213
A
TYR
214
n
214
TYR
214
A
THR
215
n
215
THR
215
A
ASP
216
n
216
ASP
216
A
TRP
217
n
217
TRP
217
A
ILE
218
n
218
ILE
218
A
GLN
219
n
219
GLN
219
A
ARG
220
n
220
ARG
220
A
ASN
221
n
221
ASN
221
A
ILE
222
n
222
ILE
222
A
ALA
223
n
223
ALA
223
A
GLY
224
n
224
GLY
224
A
ASN
225
n
225
ASN
225
A
THR
226
n
226
THR
226
A
ASP
227
n
227
ASP
227
A
ALA
228
n
228
ALA
228
A
THR
229
n
229
THR
229
A
CYS
230
n
230
CYS
230
A
PRO
231
n
231
PRO
231
A
PRO
232
n
232
PRO
232
A
1
0.504
2
0.496
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASP
5
A
N
ASP
5
A
O
CYS
138
A
O
CYS
138
A
N
ASN
142
A
N
ASN
142
A
O
GLY
165
A
O
GLY
165
A
N
ALA
164
A
N
ALA
164
A
O
GLY
206
A
O
GLY
206
A
O
ILE
207
A
O
ILE
207
A
N
TYR
194
A
N
TYR
194
A
O
GLN
189
A
O
GLN
189
A
N
LEU
182
A
N
LEU
182
A
O
ILE
183
A
O
ILE
183
A
N
ARG
118
A
N
ARG
118
A
N
CYS
117
A
N
CYS
117
A
O
ILE
141
A
O
ILE
141
A
O
GLN
63
A
O
GLN
63
A
N
LEU
50
A
N
LEU
50
A
O
GLN
49
A
O
GLN
49
A
N
PHE
17
A
N
PHE
17
A
N
LEU
18
A
N
LEU
18
A
O
PHE
24
A
O
PHE
24
A
N
THR
28
A
N
THR
28
A
O
VAL
36
A
O
VAL
36
A
N
THR
37
A
N
THR
37
A
O
MET
87
A
O
MET
87
A
O
LYS
90
A
O
LYS
90
A
N
LYS
68
A
N
LYS
68
1
A
A
OD2
OG
ASP
SER
61
98
2.08
1
9.53
1.50
119.30
128.83
A
A
A
C
N
CA
GLY
PRO
PRO
202
203
203
Y
1
-12.93
2.10
128.40
115.47
A
A
A
C
N
CD
GLY
PRO
PRO
202
203
203
Y
1
A
PRO
13
-55.56
-7.91
1
A
SER
20
-154.34
-61.35
1
A
THR
37
-171.89
-172.13
1
A
GLU
60
-48.63
-16.24
1
A
ASP
61
-140.43
58.04
1
A
VAL
113
-35.87
143.90
1
A
ASP
145
-43.60
151.29
1
A
ASN
154
-55.62
-8.47
1
A
THR
160
-98.75
44.32
1
A
LEU
167
-25.91
-71.85
1
A
GLU
168
-67.29
2.99
1
A
VAL
175
-35.48
102.99
1
A
ASN
185
44.57
70.80
1
A
SER
193
-141.19
-47.17
1
A
PRO
203
13.45
36.94
1
A
ASN
210
-65.66
88.77
42.930
-20.18
0.00
0.00
-20.18
0.00
40.36
0.904
0.845
0.26852
0.21592
0.21844
2.60
59.78
397
8380
8066
4.7
96.25
17.034
0.335
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.164
0.071
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
2.60
59.78
7
1769
0
0
1762
0.009
0.022
1812
1.366
1.959
2474
6.986
5.000
231
38.955
26.026
78
21.624
15.000
283
7.182
15.000
3
0.091
0.200
270
0.007
0.021
1398
0.350
1.500
1154
0.672
2.000
1870
0.994
3.000
658
1.678
4.500
604
0.532
0.239
2.664
15
548
20
85.43
2.60
59.78
4GSO
8380
8066
0
0
1
96.25
0.339
2.60
2.69
864
1
3.3
91
phasing
MOLREP
refinement
REFMAC
5.5.0110
data reduction
HKL-2000
data scaling
HKL-2000
Thrombin-like enzyme BjussuSP-1 (E.C.3.4.21.-)
structure of Jararacussin-I
1
N
N
2
N
N
A
ALA
38
A
ALA
38
HELX_P
A
ASP
42
A
ASP
42
5
1
5
A
TYR
146
A
TYR
146
HELX_P
A
GLY
151
A
GLY
151
1
2
6
A
TYR
214
A
TYR
214
HELX_P
A
GLY
224
A
GLY
224
1
3
11
disulf
2.040
A
CYS
7
A
SG
CYS
7
1_555
A
CYS
138
A
SG
CYS
138
1_555
disulf
2.011
A
CYS
25
A
SG
CYS
25
1_555
A
CYS
41
A
SG
CYS
41
1_555
disulf
2.030
A
CYS
73
A
SG
CYS
73
1_555
A
CYS
230
A
SG
CYS
230
1_555
disulf
2.035
A
CYS
117
A
SG
CYS
117
1_555
A
CYS
184
A
SG
CYS
184
1_555
disulf
2.042
A
CYS
149
A
SG
CYS
149
1_555
A
CYS
163
A
SG
CYS
163
1_555
disulf
2.047
A
CYS
174
A
SG
CYS
174
1_555
A
CYS
199
A
SG
CYS
199
1_555
HYDROLASE
Thrombin-like enzyme, hydrolase
A
HIS
197
A
HIS
197
1
A
SER
198
A
SER
198
1.43
VSP1_BOTJR
UNP
1
1
Q2PQJ3
VLGGDECDINEHPFLAFLYSHGYFCGLTLINQEWVVTAAHCDSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNMSE
VLDKDIMLIKLDKPISNSKHIAPLSLPSNPPSVGSVCRIMGWGSITIPNETYPDVPYCANINLVDYEVCQGAYNGLPAKT
TLCAGVLEGGKDTCVGDSGGPLICNGQFQGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP
1
232
4GSO
1
232
Q2PQJ3
A
1
1
232
8
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ASP
5
A
ASP
5
A
GLU
6
A
GLU
6
A
TYR
137
A
TYR
137
A
LEU
143
A
LEU
143
A
THR
161
A
THR
161
A
GLY
165
A
GLY
165
A
GLY
206
A
GLY
206
A
ASN
210
A
ASN
210
A
GLN
187
A
GLN
187
A
TYR
194
A
TYR
194
A
PRO
181
A
PRO
181
A
CYS
184
A
CYS
184
A
VAL
116
A
VAL
116
A
GLY
121
A
GLY
121
A
TYR
137
A
TYR
137
A
LEU
143
A
LEU
143
A
GLN
63
A
GLN
63
A
ARG
65
A
ARG
65
A
GLN
47
A
GLN
47
A
LEU
50
A
LEU
50
A
LEU
15
A
LEU
15
A
TYR
19
A
TYR
19
A
TYR
23
A
TYR
23
A
LEU
29
A
LEU
29
A
TRP
34
A
TRP
34
A
THR
37
A
THR
37
A
MET
87
A
MET
87
A
LEU
91
A
LEU
91
A
PRO
67
A
PRO
67
A
ILE
72
A
ILE
72
79
I 4