0.011830 0.000000 0.000000 0.000000 0.011830 0.000000 0.000000 0.000000 0.012462 0.00000 0.00000 0.00000 Ullah, A. Souza, T.C.A.B. Zanphorlin, L.M. Mariutti, R. Sanata, S.V. Murakami, M.T. Arni, R.K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 84.533 84.533 80.243 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 22 128 132 10.1002/pro.2189 23139169 Crystal structure of Jararacussin-I: The highly negatively charged catalytic interface contributes to macromolecular selectivity in snake venom thrombin-like enzymes. 2013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD MARMOSAIC 225 mm CCD SINGLE WAVELENGTH M x-ray 1 1.458 1.0 W01B-MX2 LNLS 1.458 SYNCHROTRON LNLS BEAMLINE W01B-MX2 25183.447 Thrombin-like enzyme BjussuSP-1 3.4.21.- 1 nat polymer 18.015 water 7 nat water SVTLE BjussuSP-1, Fibrinogen-clotting enzyme, Snake venom serine protease 1, SVSP, Thrombin-like enzyme BjussuSP-I, SVTLE BjussuSP-I no no VLGGDECDINEHPFLAFLYSHGYFCGLTLINQEWVVTAAHCDSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNMSE VLDKDIMLIKLDKPISNSKHIAPLSLPSNPPSVGSVCRIMGWGSITIPNETYPDVPYCANINLVDYEVCQGAYNGLPAKT TLCAGVLEGGKDTCVGDSGGPLICNGQFQGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP VLGGDECDINEHPFLAFLYSHGYFCGLTLINQEWVVTAAHCDSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNMSE VLDKDIMLIKLDKPISNSKHIAPLSLPSNPPSVGSVCRIMGWGSITIPNETYPDVPYCANINLVDYEVCQGAYNGLPAKT TLCAGVLEGGKDTCVGDSGGPLICNGQFQGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Jararacussu sample 8726 Bothrops jararacussu 1 2.85 56.78 VAPOR DIFFUSION, HANGING DROP 6.7 0.1 M MES pH 6.7 and 30% PEG 550 MME, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 repository Initial release Database references 1 0 2012-12-12 1 1 2013-01-02 RCSB Y RCSB 2012-08-28 REL REL HOH water HOH 1 2 HOH HOH 301 A HOH 2 2 HOH HOH 302 A HOH 3 2 HOH HOH 303 A HOH 4 2 HOH HOH 304 A HOH 5 2 HOH HOH 305 A HOH 6 2 HOH HOH 306 A HOH 7 2 HOH HOH 307 A VAL 1 n 1 VAL 1 A LEU 2 n 2 LEU 2 A GLY 3 n 3 GLY 3 A GLY 4 n 4 GLY 4 A ASP 5 n 5 ASP 5 A GLU 6 n 6 GLU 6 A CYS 7 n 7 CYS 7 A ASP 8 n 8 ASP 8 A ILE 9 n 9 ILE 9 A ASN 10 n 10 ASN 10 A GLU 11 n 11 GLU 11 A HIS 12 n 12 HIS 12 A PRO 13 n 13 PRO 13 A PHE 14 n 14 PHE 14 A LEU 15 n 15 LEU 15 A ALA 16 n 16 ALA 16 A PHE 17 n 17 PHE 17 A LEU 18 n 18 LEU 18 A TYR 19 n 19 TYR 19 A SER 20 n 20 SER 20 A HIS 21 n 21 HIS 21 A GLY 22 n 22 GLY 22 A TYR 23 n 23 TYR 23 A PHE 24 n 24 PHE 24 A CYS 25 n 25 CYS 25 A GLY 26 n 26 GLY 26 A LEU 27 n 27 LEU 27 A THR 28 n 28 THR 28 A LEU 29 n 29 LEU 29 A ILE 30 n 30 ILE 30 A ASN 31 n 31 ASN 31 A GLN 32 n 32 GLN 32 A GLU 33 n 33 GLU 33 A TRP 34 n 34 TRP 34 A VAL 35 n 35 VAL 35 A VAL 36 n 36 VAL 36 A THR 37 n 37 THR 37 A ALA 38 n 38 ALA 38 A ALA 39 n 39 ALA 39 A HIS 40 n 40 HIS 40 A CYS 41 n 41 CYS 41 A ASP 42 n 42 ASP 42 A SER 43 n 43 SER 43 A THR 44 n 44 THR 44 A ASN 45 n 45 ASN 45 A PHE 46 n 46 PHE 46 A GLN 47 n 47 GLN 47 A MET 48 n 48 MET 48 A GLN 49 n 49 GLN 49 A LEU 50 n 50 LEU 50 A GLY 51 n 51 GLY 51 A VAL 52 n 52 VAL 52 A HIS 53 n 53 HIS 53 A SER 54 n 54 SER 54 A LYS 55 n 55 LYS 55 A LYS 56 n 56 LYS 56 A VAL 57 n 57 VAL 57 A LEU 58 n 58 LEU 58 A ASN 59 n 59 ASN 59 A GLU 60 n 60 GLU 60 A ASP 61 n 61 ASP 61 A GLU 62 n 62 GLU 62 A GLN 63 n 63 GLN 63 A THR 64 n 64 THR 64 A ARG 65 n 65 ARG 65 A ASN 66 n 66 ASN 66 A PRO 67 n 67 PRO 67 A LYS 68 n 68 LYS 68 A GLU 69 n 69 GLU 69 A LYS 70 n 70 LYS 70 A PHE 71 n 71 PHE 71 A ILE 72 n 72 ILE 72 A CYS 73 n 73 CYS 73 A PRO 74 n 74 PRO 74 A ASN 75 n 75 ASN 75 A LYS 76 n 76 LYS 76 A ASN 77 n 77 ASN 77 A MET 78 n 78 MET 78 A SER 79 n 79 SER 79 A GLU 80 n 80 GLU 80 A VAL 81 n 81 VAL 81 A LEU 82 n 82 LEU 82 A ASP 83 n 83 ASP 83 A LYS 84 n 84 LYS 84 A ASP 85 n 85 ASP 85 A ILE 86 n 86 ILE 86 A MET 87 n 87 MET 87 A LEU 88 n 88 LEU 88 A ILE 89 n 89 ILE 89 A LYS 90 n 90 LYS 90 A LEU 91 n 91 LEU 91 A ASP 92 n 92 ASP 92 A LYS 93 n 93 LYS 93 A PRO 94 n 94 PRO 94 A ILE 95 n 95 ILE 95 A SER 96 n 96 SER 96 A ASN 97 n 97 ASN 97 A SER 98 n 98 SER 98 A LYS 99 n 99 LYS 99 A HIS 100 n 100 HIS 100 A ILE 101 n 101 ILE 101 A ALA 102 n 102 ALA 102 A PRO 103 n 103 PRO 103 A LEU 104 n 104 LEU 104 A SER 105 n 105 SER 105 A LEU 106 n 106 LEU 106 A PRO 107 n 107 PRO 107 A SER 108 n 108 SER 108 A ASN 109 n 109 ASN 109 A PRO 110 n 110 PRO 110 A PRO 111 n 111 PRO 111 A SER 112 n 112 SER 112 A VAL 113 n 113 VAL 113 A GLY 114 n 114 GLY 114 A SER 115 n 115 SER 115 A VAL 116 n 116 VAL 116 A CYS 117 n 117 CYS 117 A ARG 118 n 118 ARG 118 A ILE 119 n 119 ILE 119 A MET 120 n 120 MET 120 A GLY 121 n 121 GLY 121 A TRP 122 n 122 TRP 122 A GLY 123 n 123 GLY 123 A SER 124 n 124 SER 124 A ILE 125 n 125 ILE 125 A THR 126 n 126 THR 126 A ILE 127 n 127 ILE 127 A PRO 128 n 128 PRO 128 A ASN 129 n 129 ASN 129 A GLU 130 n 130 GLU 130 A THR 131 n 131 THR 131 A TYR 132 n 132 TYR 132 A PRO 133 n 133 PRO 133 A ASP 134 n 134 ASP 134 A VAL 135 n 135 VAL 135 A PRO 136 n 136 PRO 136 A TYR 137 n 137 TYR 137 A CYS 138 n 138 CYS 138 A ALA 139 n 139 ALA 139 A ASN 140 n 140 ASN 140 A ILE 141 n 141 ILE 141 A ASN 142 n 142 ASN 142 A LEU 143 n 143 LEU 143 A VAL 144 n 144 VAL 144 A ASP 145 n 145 ASP 145 A TYR 146 n 146 TYR 146 A GLU 147 n 147 GLU 147 A VAL 148 n 148 VAL 148 A CYS 149 n 149 CYS 149 A GLN 150 n 150 GLN 150 A GLY 151 n 151 GLY 151 A ALA 152 n 152 ALA 152 A TYR 153 n 153 TYR 153 A ASN 154 n 154 ASN 154 A GLY 155 n 155 GLY 155 A LEU 156 n 156 LEU 156 A PRO 157 n 157 PRO 157 A ALA 158 n 158 ALA 158 A LYS 159 n 159 LYS 159 A THR 160 n 160 THR 160 A THR 161 n 161 THR 161 A LEU 162 n 162 LEU 162 A CYS 163 n 163 CYS 163 A ALA 164 n 164 ALA 164 A GLY 165 n 165 GLY 165 A VAL 166 n 166 VAL 166 A LEU 167 n 167 LEU 167 A GLU 168 n 168 GLU 168 A GLY 169 n 169 GLY 169 A GLY 170 n 170 GLY 170 A LYS 171 n 171 LYS 171 A ASP 172 n 172 ASP 172 A THR 173 n 173 THR 173 A CYS 174 n 174 CYS 174 A VAL 175 n 175 VAL 175 A GLY 176 n 176 GLY 176 A ASP 177 n 177 ASP 177 A SER 178 n 178 SER 178 A GLY 179 n 179 GLY 179 A GLY 180 n 180 GLY 180 A PRO 181 n 181 PRO 181 A LEU 182 n 182 LEU 182 A ILE 183 n 183 ILE 183 A CYS 184 n 184 CYS 184 A ASN 185 n 185 ASN 185 A GLY 186 n 186 GLY 186 A GLN 187 n 187 GLN 187 A PHE 188 n 188 PHE 188 A GLN 189 n 189 GLN 189 A GLY 190 n 190 GLY 190 A ILE 191 n 191 ILE 191 A VAL 192 n 192 VAL 192 A SER 193 n 193 SER 193 A TYR 194 n 194 TYR 194 A GLY 195 n 195 GLY 195 A ALA 196 n 196 ALA 196 A HIS 197 n 197 HIS 197 A SER 198 n 198 SER 198 A CYS 199 n 199 CYS 199 A GLY 200 n 200 GLY 200 A GLN 201 n 201 GLN 201 A GLY 202 n 202 GLY 202 A PRO 203 n 203 PRO 203 A LYS 204 n 204 LYS 204 A PRO 205 n 205 PRO 205 A GLY 206 n 206 GLY 206 A ILE 207 n 207 ILE 207 A TYR 208 n 208 TYR 208 A THR 209 n 209 THR 209 A ASN 210 n 210 ASN 210 A VAL 211 n 211 VAL 211 A PHE 212 n 212 PHE 212 A ASP 213 n 213 ASP 213 A TYR 214 n 214 TYR 214 A THR 215 n 215 THR 215 A ASP 216 n 216 ASP 216 A TRP 217 n 217 TRP 217 A ILE 218 n 218 ILE 218 A GLN 219 n 219 GLN 219 A ARG 220 n 220 ARG 220 A ASN 221 n 221 ASN 221 A ILE 222 n 222 ILE 222 A ALA 223 n 223 ALA 223 A GLY 224 n 224 GLY 224 A ASN 225 n 225 ASN 225 A THR 226 n 226 THR 226 A ASP 227 n 227 ASP 227 A ALA 228 n 228 ALA 228 A THR 229 n 229 THR 229 A CYS 230 n 230 CYS 230 A PRO 231 n 231 PRO 231 A PRO 232 n 232 PRO 232 A 1 0.504 2 0.496 author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASP 5 A N ASP 5 A O CYS 138 A O CYS 138 A N ASN 142 A N ASN 142 A O GLY 165 A O GLY 165 A N ALA 164 A N ALA 164 A O GLY 206 A O GLY 206 A O ILE 207 A O ILE 207 A N TYR 194 A N TYR 194 A O GLN 189 A O GLN 189 A N LEU 182 A N LEU 182 A O ILE 183 A O ILE 183 A N ARG 118 A N ARG 118 A N CYS 117 A N CYS 117 A O ILE 141 A O ILE 141 A O GLN 63 A O GLN 63 A N LEU 50 A N LEU 50 A O GLN 49 A O GLN 49 A N PHE 17 A N PHE 17 A N LEU 18 A N LEU 18 A O PHE 24 A O PHE 24 A N THR 28 A N THR 28 A O VAL 36 A O VAL 36 A N THR 37 A N THR 37 A O MET 87 A O MET 87 A O LYS 90 A O LYS 90 A N LYS 68 A N LYS 68 1 A A OD2 OG ASP SER 61 98 2.08 1 9.53 1.50 119.30 128.83 A A A C N CA GLY PRO PRO 202 203 203 Y 1 -12.93 2.10 128.40 115.47 A A A C N CD GLY PRO PRO 202 203 203 Y 1 A PRO 13 -55.56 -7.91 1 A SER 20 -154.34 -61.35 1 A THR 37 -171.89 -172.13 1 A GLU 60 -48.63 -16.24 1 A ASP 61 -140.43 58.04 1 A VAL 113 -35.87 143.90 1 A ASP 145 -43.60 151.29 1 A ASN 154 -55.62 -8.47 1 A THR 160 -98.75 44.32 1 A LEU 167 -25.91 -71.85 1 A GLU 168 -67.29 2.99 1 A VAL 175 -35.48 102.99 1 A ASN 185 44.57 70.80 1 A SER 193 -141.19 -47.17 1 A PRO 203 13.45 36.94 1 A ASN 210 -65.66 88.77 42.930 -20.18 0.00 0.00 -20.18 0.00 40.36 0.904 0.845 0.26852 0.21592 0.21844 2.60 59.78 397 8380 8066 4.7 96.25 17.034 0.335 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.164 0.071 0.80 0.80 1.40 MAXIMUM LIKELIHOOD MASK 2.60 59.78 7 1769 0 0 1762 0.009 0.022 1812 1.366 1.959 2474 6.986 5.000 231 38.955 26.026 78 21.624 15.000 283 7.182 15.000 3 0.091 0.200 270 0.007 0.021 1398 0.350 1.500 1154 0.672 2.000 1870 0.994 3.000 658 1.678 4.500 604 0.532 0.239 2.664 15 548 20 85.43 2.60 59.78 4GSO 8380 8066 0 0 1 96.25 0.339 2.60 2.69 864 1 3.3 91 phasing MOLREP refinement REFMAC 5.5.0110 data reduction HKL-2000 data scaling HKL-2000 Thrombin-like enzyme BjussuSP-1 (E.C.3.4.21.-) structure of Jararacussin-I 1 N N 2 N N A ALA 38 A ALA 38 HELX_P A ASP 42 A ASP 42 5 1 5 A TYR 146 A TYR 146 HELX_P A GLY 151 A GLY 151 1 2 6 A TYR 214 A TYR 214 HELX_P A GLY 224 A GLY 224 1 3 11 disulf 2.040 A CYS 7 A SG CYS 7 1_555 A CYS 138 A SG CYS 138 1_555 disulf 2.011 A CYS 25 A SG CYS 25 1_555 A CYS 41 A SG CYS 41 1_555 disulf 2.030 A CYS 73 A SG CYS 73 1_555 A CYS 230 A SG CYS 230 1_555 disulf 2.035 A CYS 117 A SG CYS 117 1_555 A CYS 184 A SG CYS 184 1_555 disulf 2.042 A CYS 149 A SG CYS 149 1_555 A CYS 163 A SG CYS 163 1_555 disulf 2.047 A CYS 174 A SG CYS 174 1_555 A CYS 199 A SG CYS 199 1_555 HYDROLASE Thrombin-like enzyme, hydrolase A HIS 197 A HIS 197 1 A SER 198 A SER 198 1.43 VSP1_BOTJR UNP 1 1 Q2PQJ3 VLGGDECDINEHPFLAFLYSHGYFCGLTLINQEWVVTAAHCDSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNMSE VLDKDIMLIKLDKPISNSKHIAPLSLPSNPPSVGSVCRIMGWGSITIPNETYPDVPYCANINLVDYEVCQGAYNGLPAKT TLCAGVLEGGKDTCVGDSGGPLICNGQFQGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP 1 232 4GSO 1 232 Q2PQJ3 A 1 1 232 8 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ASP 5 A ASP 5 A GLU 6 A GLU 6 A TYR 137 A TYR 137 A LEU 143 A LEU 143 A THR 161 A THR 161 A GLY 165 A GLY 165 A GLY 206 A GLY 206 A ASN 210 A ASN 210 A GLN 187 A GLN 187 A TYR 194 A TYR 194 A PRO 181 A PRO 181 A CYS 184 A CYS 184 A VAL 116 A VAL 116 A GLY 121 A GLY 121 A TYR 137 A TYR 137 A LEU 143 A LEU 143 A GLN 63 A GLN 63 A ARG 65 A ARG 65 A GLN 47 A GLN 47 A LEU 50 A LEU 50 A LEU 15 A LEU 15 A TYR 19 A TYR 19 A TYR 23 A TYR 23 A LEU 29 A LEU 29 A TRP 34 A TRP 34 A THR 37 A THR 37 A MET 87 A MET 87 A LEU 91 A LEU 91 A PRO 67 A PRO 67 A ILE 72 A ILE 72 79 I 4