0.025886 0.000000 0.000000 0.000000 0.020054 0.000000 0.000000 0.000000 0.013017 0.00000 0.00000 0.00000 Bosch, D.E. Siderovski, D.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 38.631 49.865 76.824 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N O N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N S N 291 N O N 292 N O N 293 N O N 294 N O N 295 N N N 296 S C N 297 N C N 298 N O N 299 R C N 300 N O N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C Y 322 N C N 323 N O N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 N C N 341 N C N 342 N C N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N doub N 313 N sing Y 314 N doub N 315 N sing Y 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 288 2290 2302 10.1074/jbc.M112.417337 23209297 Structural Determinants of Ubiquitin Conjugation in Entamoeba histolytica. 2013 10.2210/pdb4gsw/pdb pdb_00004gsw 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 2012-04-08 MAR scanner 300 mm plate double crystal SINGLE WAVELENGTH M x-ray 1 1.000 1.0 23-ID-B APS 1.000 SYNCHROTRON APS BEAMLINE 23-ID-B 8982.275 Ubiquitin 2 man polymer 96.063 SULFATE ION 2 syn non-polymer 18.015 water 44 nat water Ubiquitin, putative no no SNAMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDYNIQKESTLHLVLRLRGGY SNAMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDYNIQKESTLHLVLRLRGGY A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample EhUBI1, EHI_083270, EHI_083410, EHI_156660, EHI_178340 5759 Entamoeba histolytica 562 Escherichia coli plasmid pLIC His 1 2.06 40.27 VAPOR DIFFUSION, HANGING DROP 5.5 EhUbiquitin at 13 mg/mL in S200 buffer was mixed 1:1 with and equilibrated against crystallization solution containing 22% (w/v) PEG 3350, 200 mM LiSO4, and 100 mM Bis-Tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Database references Database references Data collection Database references Derived calculations Refinement description 1 0 2012-12-12 1 1 2012-12-19 1 2 2013-02-13 1 3 2023-09-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-08-28 REL REL SO4 SULFATE ION HOH water 1UBQ PDB entry 1UBQ PDB experimental model SO4 1 2 SO4 SO4 101 A SO4 2 2 SO4 SO4 102 A HOH 2 3 HOH HOH 201 A HOH 3 3 HOH HOH 202 A HOH 4 3 HOH HOH 203 A HOH 5 3 HOH HOH 204 A HOH 7 3 HOH HOH 205 A HOH 8 3 HOH HOH 206 A HOH 13 3 HOH HOH 207 A HOH 14 3 HOH HOH 208 A HOH 15 3 HOH HOH 209 A HOH 18 3 HOH HOH 210 A HOH 19 3 HOH HOH 211 A HOH 20 3 HOH HOH 212 A HOH 21 3 HOH HOH 213 A HOH 24 3 HOH HOH 214 A HOH 25 3 HOH HOH 215 A HOH 36 3 HOH HOH 216 A HOH 38 3 HOH HOH 217 A HOH 1 3 HOH HOH 101 B HOH 6 3 HOH HOH 102 B HOH 9 3 HOH HOH 103 B HOH 10 3 HOH HOH 104 B HOH 11 3 HOH HOH 105 B HOH 12 3 HOH HOH 106 B HOH 16 3 HOH HOH 107 B HOH 17 3 HOH HOH 108 B HOH 22 3 HOH HOH 109 B HOH 23 3 HOH HOH 110 B HOH 26 3 HOH HOH 111 B HOH 27 3 HOH HOH 112 B HOH 28 3 HOH HOH 113 B HOH 29 3 HOH HOH 114 B HOH 30 3 HOH HOH 115 B HOH 31 3 HOH HOH 116 B HOH 32 3 HOH HOH 117 B HOH 33 3 HOH HOH 118 B HOH 34 3 HOH HOH 119 B HOH 35 3 HOH HOH 120 B HOH 37 3 HOH HOH 121 B HOH 39 3 HOH HOH 122 B HOH 40 3 HOH HOH 123 B HOH 41 3 HOH HOH 124 B HOH 42 3 HOH HOH 125 B HOH 43 3 HOH HOH 126 B HOH 44 3 HOH HOH 127 B n 1 1 A ASN 2 n 2 ASN 2 A ALA 3 n 3 ALA 3 A MET 4 n 4 MET 4 A GLN 5 n 5 GLN 5 A ILE 6 n 6 ILE 6 A PHE 7 n 7 PHE 7 A VAL 8 n 8 VAL 8 A LYS 9 n 9 LYS 9 A THR 10 n 10 THR 10 A LEU 11 n 11 LEU 11 A THR 12 n 12 THR 12 A GLY 13 n 13 GLY 13 A LYS 14 n 14 LYS 14 A THR 15 n 15 THR 15 A ILE 16 n 16 ILE 16 A THR 17 n 17 THR 17 A LEU 18 n 18 LEU 18 A GLU 19 n 19 GLU 19 A VAL 20 n 20 VAL 20 A GLU 21 n 21 GLU 21 A PRO 22 n 22 PRO 22 A ASN 23 n 23 ASN 23 A ASP 24 n 24 ASP 24 A SER 25 n 25 SER 25 A ILE 26 n 26 ILE 26 A ASP 27 n 27 ASP 27 A ALA 28 n 28 ALA 28 A ILE 29 n 29 ILE 29 A LYS 30 n 30 LYS 30 A ALA 31 n 31 ALA 31 A LYS 32 n 32 LYS 32 A ILE 33 n 33 ILE 33 A GLN 34 n 34 GLN 34 A GLU 35 n 35 GLU 35 A LYS 36 n 36 LYS 36 A GLU 37 n 37 GLU 37 A GLY 38 n 38 GLY 38 A ILE 39 n 39 ILE 39 A PRO 40 n 40 PRO 40 A PRO 41 n 41 PRO 41 A ASP 42 n 42 ASP 42 A GLN 43 n 43 GLN 43 A GLN 44 n 44 GLN 44 A ARG 45 n 45 ARG 45 A LEU 46 n 46 LEU 46 A ILE 47 n 47 ILE 47 A PHE 48 n 48 PHE 48 A ALA 49 n 49 ALA 49 A GLY 50 n 50 GLY 50 A LYS 51 n 51 LYS 51 A GLN 52 n 52 GLN 52 A LEU 53 n 53 LEU 53 A GLU 54 n 54 GLU 54 A GLU 55 n 55 GLU 55 A GLY 56 n 56 GLY 56 A LYS 57 n 57 LYS 57 A THR 58 n 58 THR 58 A LEU 59 n 59 LEU 59 A SER 60 n 60 SER 60 A ASP 61 n 61 ASP 61 A TYR 62 n 62 TYR 62 A ASN 63 n 63 ASN 63 A ILE 64 n 64 ILE 64 A GLN 65 n 65 GLN 65 A LYS 66 n 66 LYS 66 A GLU 67 n 67 GLU 67 A SER 68 n 68 SER 68 A THR 69 n 69 THR 69 A LEU 70 n 70 LEU 70 A HIS 71 n 71 HIS 71 A LEU 72 n 72 LEU 72 A VAL 73 n 73 VAL 73 A LEU 74 n 74 LEU 74 A ARG 75 n 75 ARG 75 A n 76 76 A n 77 77 A n 78 78 A n 79 79 A n 80 80 A n 1 1 B n 2 2 B n 3 3 B MET 4 n 4 MET 4 B GLN 5 n 5 GLN 5 B ILE 6 n 6 ILE 6 B PHE 7 n 7 PHE 7 B VAL 8 n 8 VAL 8 B LYS 9 n 9 LYS 9 B THR 10 n 10 THR 10 B LEU 11 n 11 LEU 11 B THR 12 n 12 THR 12 B GLY 13 n 13 GLY 13 B LYS 14 n 14 LYS 14 B THR 15 n 15 THR 15 B ILE 16 n 16 ILE 16 B THR 17 n 17 THR 17 B LEU 18 n 18 LEU 18 B GLU 19 n 19 GLU 19 B VAL 20 n 20 VAL 20 B GLU 21 n 21 GLU 21 B PRO 22 n 22 PRO 22 B ASN 23 n 23 ASN 23 B ASP 24 n 24 ASP 24 B SER 25 n 25 SER 25 B ILE 26 n 26 ILE 26 B ASP 27 n 27 ASP 27 B ALA 28 n 28 ALA 28 B ILE 29 n 29 ILE 29 B LYS 30 n 30 LYS 30 B ALA 31 n 31 ALA 31 B LYS 32 n 32 LYS 32 B ILE 33 n 33 ILE 33 B GLN 34 n 34 GLN 34 B GLU 35 n 35 GLU 35 B LYS 36 n 36 LYS 36 B GLU 37 n 37 GLU 37 B GLY 38 n 38 GLY 38 B ILE 39 n 39 ILE 39 B PRO 40 n 40 PRO 40 B PRO 41 n 41 PRO 41 B ASP 42 n 42 ASP 42 B GLN 43 n 43 GLN 43 B GLN 44 n 44 GLN 44 B ARG 45 n 45 ARG 45 B LEU 46 n 46 LEU 46 B ILE 47 n 47 ILE 47 B PHE 48 n 48 PHE 48 B ALA 49 n 49 ALA 49 B GLY 50 n 50 GLY 50 B LYS 51 n 51 LYS 51 B GLN 52 n 52 GLN 52 B LEU 53 n 53 LEU 53 B GLU 54 n 54 GLU 54 B GLU 55 n 55 GLU 55 B GLY 56 n 56 GLY 56 B LYS 57 n 57 LYS 57 B THR 58 n 58 THR 58 B LEU 59 n 59 LEU 59 B SER 60 n 60 SER 60 B ASP 61 n 61 ASP 61 B TYR 62 n 62 TYR 62 B ASN 63 n 63 ASN 63 B ILE 64 n 64 ILE 64 B GLN 65 n 65 GLN 65 B LYS 66 n 66 LYS 66 B GLU 67 n 67 GLU 67 B SER 68 n 68 SER 68 B THR 69 n 69 THR 69 B LEU 70 n 70 LEU 70 B HIS 71 n 71 HIS 71 B LEU 72 n 72 LEU 72 B VAL 73 n 73 VAL 73 B LEU 74 n 74 LEU 74 B ARG 75 n 75 ARG 75 B LEU 76 n 76 LEU 76 B n 77 77 B n 78 78 B n 79 79 B n 80 80 B 8.8825 4.2839 -6.4294 7.5101 -5.5208 7.7505 -0.1363 0.0645 -0.1283 -0.5750 0.0903 0.4981 0.2889 0.1123 0.0082 0.3596 -0.0260 -0.0121 0.3096 -0.0856 0.4316 refined -2.9252 -17.0672 16.8572 X-RAY DIFFRACTION 8.7358 4.4651 -1.0012 3.6026 -2.1792 4.2165 0.1084 -0.0855 -0.0624 -0.4293 -0.1908 -0.3767 0.0558 -0.0522 0.0436 0.3324 0.0713 -0.0259 0.2434 -0.0233 0.4811 refined -5.1492 -8.0573 14.2490 X-RAY DIFFRACTION 6.8637 -5.0076 0.9368 7.1349 0.0418 3.5057 0.1044 -0.2153 0.9020 0.4530 -0.0121 0.0763 -0.1947 0.1502 0.0079 0.4440 0.0032 -0.0267 0.2985 -0.0085 0.4650 refined -5.5120 -7.0095 25.2201 X-RAY DIFFRACTION 6.0129 -0.3649 -3.3947 4.8498 -0.0770 2.1587 -0.0693 -0.3594 -0.0825 -0.0779 -0.1956 -0.0386 0.0691 0.2466 0.2527 0.2423 0.0302 -0.1238 0.2914 0.0047 0.3544 refined 1.2656 -9.2786 21.3620 X-RAY DIFFRACTION 9.3361 6.6156 -2.8801 5.9387 -2.0463 3.0799 0.3154 0.1665 -0.5305 0.7282 -0.0346 -1.3257 0.2901 0.3948 -0.4972 0.4475 -0.0134 -0.0807 0.4096 -0.0300 0.3950 refined -11.3566 3.6142 1.4181 X-RAY DIFFRACTION 4.4323 2.3395 1.5656 2.1660 3.4670 9.0985 0.1158 -0.0723 0.1625 -0.1913 -0.1121 0.0043 -0.1042 0.0305 0.0683 0.2925 0.0341 0.0161 0.2180 0.0265 0.4959 refined -10.1049 2.2378 12.3134 X-RAY DIFFRACTION 4.1818 1.6119 -1.3273 5.3056 1.8039 4.8203 -0.1059 0.0158 -0.1921 -0.2086 -0.0002 -0.0343 0.2476 -0.7675 0.0439 0.3401 0.0264 -0.0946 0.4227 0.0791 0.4536 refined -22.1508 -0.0980 8.1131 X-RAY DIFFRACTION 3.6481 -0.3188 -0.1683 4.8238 3.9109 3.2613 0.2274 0.2805 -0.2308 -0.2513 0.0457 -0.7924 -0.2597 -0.7043 -0.0281 0.4043 0.0307 0.0149 0.3796 0.0829 0.5466 refined -17.0472 6.3741 5.4694 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 (CHAIN A AND RESID 2:18) X-RAY DIFFRACTION 2 (CHAIN A AND RESID 19:37) X-RAY DIFFRACTION 3 (CHAIN A AND RESID 38:55) X-RAY DIFFRACTION 4 (CHAIN A AND RESID 56:75) X-RAY DIFFRACTION 5 (CHAIN B AND RESID 4:23) X-RAY DIFFRACTION 6 (CHAIN B AND RESID 24:44) X-RAY DIFFRACTION 7 (CHAIN B AND RESID 45:64) X-RAY DIFFRACTION 8 (CHAIN B AND RESID 65:76) author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 18 A O LEU 18 A N ILE 6 A N ILE 6 A N LYS 9 A N LYS 9 A O LEU 70 A O LEU 70 A O VAL 73 A O VAL 73 A N ARG 45 A N ARG 45 A N LEU 46 A N LEU 46 A O LEU 53 A O LEU 53 B O LEU 18 B O LEU 18 B N ILE 6 B N ILE 6 B N PHE 7 B N PHE 7 B O LEU 70 B O LEU 70 B O VAL 73 B O VAL 73 B N ARG 45 B N ARG 45 B N PHE 48 B N PHE 48 B O LYS 51 B O LYS 51 1 B CA LEU 76 B CA LEU 76 0 Y 1 A SER 1 A SER 1 1 Y 1 A LEU 76 A LEU 76 1 Y 1 A ARG 77 A ARG 77 1 Y 1 A GLY 78 A GLY 78 1 Y 1 A GLY 79 A GLY 79 1 Y 1 A TYR 80 A TYR 80 1 Y 1 B SER 1 B SER 1 1 Y 1 B ASN 2 B ASN 2 1 Y 1 B ALA 3 B ALA 3 1 Y 1 B ARG 77 B ARG 77 1 Y 1 B GLY 78 B GLY 78 1 Y 1 B GLY 79 B GLY 79 1 Y 1 B TYR 80 B TYR 80 1 Y 1 B B O O HOH HOH 124 127 2.02 1 B B O O HOH HOH 119 121 2.14 1 B B O O HOH HOH 119 120 2.18 1 A ALA 3 -48.41 152.55 1 B THR 10 -78.18 -166.72 0.2561 0.1932 0.1994 2.15 34.513 840 8591 8379 10.03 97.53 0.29 RANDOM 1 1.34 MOLECULAR REPLACEMENT 29.07 1.00 1.20 PDB entry 1UBQ ML FLAT BULK SOLVENT MODEL 2.15 34.513 44 1219 10 0 1165 0.014 1192 1.493 1606 16.107 470 0.094 191 0.007 204 0.3505 0.2658 2.2772 129 1154 1154 92.00 0.3471 0.2456 2.4530 135 1213 97.00 0.3361 0.2415 2.6997 141 1260 99.00 0.2710 0.2206 3.0902 141 1276 99.00 0.2642 0.1768 3.8924 145 1293 99.00 0.1930 0.1598 34.5176 149 1343 98.00 32.8 2.15 40.0 4GSW 8593 8430 0 0 0.085 1 13.6 3.5 98.1 0.2790 2.15 2.17 3.1 210 1 3.3 96.8 data collection HKL-2000 model building PHENIX AutoMR refinement PHENIX (phenix.refine: 1.8_1069) data reduction HKL-2000 data scaling HKL-2000 phasing PHENIX AutoMR Crystal structure of ubiquitin from Entamoeba histolytica to 2.15 Angstrom 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A SER 25 A SER 25 HELX_P A GLY 38 A GLY 38 1 1 14 A PRO 40 A PRO 40 HELX_P A ASP 42 A ASP 42 5 2 3 A THR 58 A THR 58 HELX_P A ASN 63 A ASN 63 5 3 6 B SER 25 B SER 25 HELX_P B GLY 38 B GLY 38 1 4 14 B PRO 40 B PRO 40 HELX_P B ASP 42 B ASP 42 5 5 3 B THR 58 B THR 58 HELX_P B ASN 63 B ASN 63 5 6 6 PROTEIN BINDING ubiquitin, ubiquitin-like modifier, ubiquitin fold, post-translational modification, EhUbc5, EhUba1, ubiquitination, isopeptide bond, PROTEIN BINDING C4M760_ENTHI UNP 1 1 C4M760 MQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDYNIQKESTLHLVLRLRGGY 1 77 4GSW 4 80 C4M760 A 1 4 80 1 77 4GSW 4 80 C4M760 B 1 4 80 1 expression tag SER 1 4GSW A C4M760 UNP 1 1 expression tag ASN 2 4GSW A C4M760 UNP 2 1 expression tag ALA 3 4GSW A C4M760 UNP 3 2 expression tag SER 1 4GSW B C4M760 UNP 1 2 expression tag ASN 2 4GSW B C4M760 UNP 2 2 expression tag ALA 3 4GSW B C4M760 UNP 3 5 5 anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A THR 15 A THR 15 A VAL 20 A VAL 20 A MET 4 A MET 4 A LYS 9 A LYS 9 A THR 69 A THR 69 A LEU 74 A LEU 74 A GLN 44 A GLN 44 A PHE 48 A PHE 48 A LYS 51 A LYS 51 A LEU 53 A LEU 53 B THR 15 B THR 15 B GLU 19 B GLU 19 B GLN 5 B GLN 5 B LYS 9 B LYS 9 B THR 69 B THR 69 B LEU 74 B LEU 74 B GLN 44 B GLN 44 B PHE 48 B PHE 48 B LYS 51 B LYS 51 B GLN 52 B GLN 52 BINDING SITE FOR RESIDUE SO4 A 101 A SO4 101 Software 3 BINDING SITE FOR RESIDUE SO4 A 102 A SO4 102 Software 3 A ASN 2 A ASN 2 3 1_555 A GLU 21 A GLU 21 3 1_555 A ASN 23 A ASN 23 3 1_555 B LYS 9 B LYS 9 3 2_455 B HOH 115 F HOH 3 2_455 B HOH 121 F HOH 3 3_545 19 P 21 21 21