0.015170
0.000000
0.000000
-0.000000
0.005324
0.000000
0.000000
-0.000000
0.015047
0.000000
0.000000
0.000000
Seattle Structural Genomics Center for Infectious Disease (SSGCID)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
65.920
187.820
66.460
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C10 H15 N5 O10 P2
427.201
n
2'-DEOXYGUANOSINE-5'-DIPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O4
150.173
TRIETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
O
N
76
N
P
N
77
N
O
N
78
N
O
N
79
N
O
N
80
S
P
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
C
N
85
R
C
N
86
N
O
N
87
S
C
N
88
N
O
N
89
N
C
N
90
R
C
Y
91
N
N
Y
92
N
C
Y
93
N
N
Y
94
N
C
Y
95
N
C
N
96
N
N
N
97
N
C
N
98
N
N
N
99
N
N
N
100
N
C
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
O
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
O
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
N
C
N
158
N
C
N
159
N
O
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
Y
171
N
C
Y
172
N
N
Y
173
N
C
Y
174
N
C
Y
175
N
N
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
N
N
191
S
C
N
192
N
C
N
193
N
O
N
194
S
C
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
N
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
S
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
N
348
N
O
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
R
C
N
362
N
O
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
N
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
N
412
N
O
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
N
N
426
S
C
N
427
N
C
N
428
N
O
N
429
N
C
N
430
N
C
N
431
N
C
N
432
N
O
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
Y
98
N
sing
Y
99
N
sing
Y
100
N
doub
N
101
N
sing
Y
102
N
sing
Y
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
Y
171
N
sing
Y
172
N
doub
Y
173
N
doub
N
174
N
sing
Y
175
N
sing
N
176
N
sing
Y
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
doub
Y
376
N
sing
Y
377
N
sing
N
378
N
sing
Y
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
doub
N
383
N
sing
Y
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
NE
J.Struct.Funct.Genom.
1345-711X
16
91
99
10.1007/s10969-015-9197-2
25832174
Crystal structures of Mycobacterial MeaB and MMAA-like GTPases.
2015
10.2210/pdb4gt1/pdb
pdb_00004gt1
100
1
CCD
2012-08-04
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
0.9774
1.0
5.0.1
ALS
0.9774
SYNCHROTRON
ALS BEAMLINE 5.0.1
38596.938
Probable GTPase Rv1496/MT1543
3.6.-.-
1
man
polymer
427.201
2'-DEOXYGUANOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
150.173
TRIETHYLENE GLYCOL
2
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
140
nat
water
no
no
MAHHHHHHMGTLEAQTQGPGSMMAASHDDDTVDGLATAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRLLPDSGNAH
RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRAT
RETVVLLEAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAAR
ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDARRRDQQVDWTWQLVRDAVLDRVWSNPT
VRKVRSELERRVRAGELTPALAAQQILEIANLTDR
MAHHHHHHMGTLEAQTQGPGSMMAASHDDDTVDGLATAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRLLPDSGNAH
RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRAT
RETVVLLEAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAAR
ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDARRRDQQVDWTWQLVRDAVLDRVWSNPT
VRKVRSELERRVRAGELTPALAAQQILEIANLTDR
A
MytuD.00200.a
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
H37Rv
sample
MT1543, MTCY277.18, Rv1496
1773
Mycobacterium tuberculosis
562
Escherichia coli
plasmid
pAVA0421
1
2.66
53.84
VAPOR DIFFUSION, SITTING DROP
5.9
MytuD.00200.a.A1 at 22 mg/mL with 4 mM dGTP against 0.1 M NaKHPO4, 48% PEG 200, 0.2 M NaCl, crystal tracking ID 236287b6, unique puck ID aqu7-6, pH 5.9, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
Seattle Structural Genomics Center for Infectious Disease
SSGCID
NIAID, National Institute of Allergy and Infectious Diseases
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-09-05
1
1
2015-03-11
1
2
2015-04-15
1
3
2015-06-03
1
4
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Rv1496 bound to GDP
Rv1496 ortholog from M. smegmatis bound to GDP
Rv1496 ortholog from M. thermoresistible bound to GDP
Rv1496 co-crystallized with GTP
Y
RCSB
Y
RCSB
2012-08-28
REL
REL
DGI
2'-DEOXYGUANOSINE-5'-DIPHOSPHATE
PGE
TRIETHYLENE GLYCOL
CL
CHLORIDE ION
HOH
water
3MD0
PDB
experimental model
DGI
335
2
DGI
DGI
401
A
PGE
336
3
PGE
PGE
402
A
PGE
337
3
PGE
PGE
403
A
CL
338
4
CL
CL
404
A
HOH
1
5
HOH
HOH
501
A
HOH
2
5
HOH
HOH
502
A
HOH
3
5
HOH
HOH
503
A
HOH
4
5
HOH
HOH
504
A
HOH
5
5
HOH
HOH
505
A
HOH
6
5
HOH
HOH
506
A
HOH
7
5
HOH
HOH
507
A
HOH
8
5
HOH
HOH
508
A
HOH
9
5
HOH
HOH
509
A
HOH
10
5
HOH
HOH
510
A
HOH
11
5
HOH
HOH
511
A
HOH
12
5
HOH
HOH
512
A
HOH
13
5
HOH
HOH
513
A
HOH
14
5
HOH
HOH
514
A
HOH
15
5
HOH
HOH
515
A
HOH
16
5
HOH
HOH
516
A
HOH
17
5
HOH
HOH
517
A
HOH
18
5
HOH
HOH
518
A
HOH
19
5
HOH
HOH
519
A
HOH
20
5
HOH
HOH
520
A
HOH
21
5
HOH
HOH
521
A
HOH
22
5
HOH
HOH
522
A
HOH
23
5
HOH
HOH
523
A
HOH
24
5
HOH
HOH
524
A
HOH
25
5
HOH
HOH
525
A
HOH
26
5
HOH
HOH
526
A
HOH
27
5
HOH
HOH
527
A
HOH
28
5
HOH
HOH
528
A
HOH
29
5
HOH
HOH
529
A
HOH
30
5
HOH
HOH
530
A
HOH
31
5
HOH
HOH
531
A
HOH
32
5
HOH
HOH
532
A
HOH
33
5
HOH
HOH
533
A
HOH
34
5
HOH
HOH
534
A
HOH
35
5
HOH
HOH
535
A
HOH
36
5
HOH
HOH
536
A
HOH
37
5
HOH
HOH
537
A
HOH
38
5
HOH
HOH
538
A
HOH
39
5
HOH
HOH
539
A
HOH
40
5
HOH
HOH
540
A
HOH
41
5
HOH
HOH
541
A
HOH
42
5
HOH
HOH
542
A
HOH
43
5
HOH
HOH
543
A
HOH
44
5
HOH
HOH
544
A
HOH
45
5
HOH
HOH
545
A
HOH
46
5
HOH
HOH
546
A
HOH
47
5
HOH
HOH
547
A
HOH
48
5
HOH
HOH
548
A
HOH
49
5
HOH
HOH
549
A
HOH
50
5
HOH
HOH
550
A
HOH
51
5
HOH
HOH
551
A
HOH
52
5
HOH
HOH
552
A
HOH
53
5
HOH
HOH
553
A
HOH
54
5
HOH
HOH
554
A
HOH
55
5
HOH
HOH
555
A
HOH
56
5
HOH
HOH
556
A
HOH
57
5
HOH
HOH
557
A
HOH
58
5
HOH
HOH
558
A
HOH
59
5
HOH
HOH
559
A
HOH
60
5
HOH
HOH
560
A
HOH
61
5
HOH
HOH
561
A
HOH
62
5
HOH
HOH
562
A
HOH
63
5
HOH
HOH
563
A
HOH
64
5
HOH
HOH
564
A
HOH
65
5
HOH
HOH
565
A
HOH
66
5
HOH
HOH
566
A
HOH
67
5
HOH
HOH
567
A
HOH
68
5
HOH
HOH
568
A
HOH
69
5
HOH
HOH
569
A
HOH
70
5
HOH
HOH
570
A
HOH
71
5
HOH
HOH
571
A
HOH
72
5
HOH
HOH
572
A
HOH
73
5
HOH
HOH
573
A
HOH
74
5
HOH
HOH
574
A
HOH
75
5
HOH
HOH
575
A
HOH
76
5
HOH
HOH
576
A
HOH
77
5
HOH
HOH
577
A
HOH
78
5
HOH
HOH
578
A
HOH
79
5
HOH
HOH
579
A
HOH
80
5
HOH
HOH
580
A
HOH
81
5
HOH
HOH
581
A
HOH
82
5
HOH
HOH
582
A
HOH
83
5
HOH
HOH
583
A
HOH
84
5
HOH
HOH
584
A
HOH
85
5
HOH
HOH
585
A
HOH
86
5
HOH
HOH
586
A
HOH
87
5
HOH
HOH
587
A
HOH
88
5
HOH
HOH
588
A
HOH
89
5
HOH
HOH
589
A
HOH
90
5
HOH
HOH
590
A
HOH
91
5
HOH
HOH
591
A
HOH
92
5
HOH
HOH
592
A
HOH
93
5
HOH
HOH
593
A
HOH
94
5
HOH
HOH
594
A
HOH
95
5
HOH
HOH
595
A
HOH
96
5
HOH
HOH
596
A
HOH
97
5
HOH
HOH
597
A
HOH
98
5
HOH
HOH
598
A
HOH
99
5
HOH
HOH
599
A
HOH
100
5
HOH
HOH
600
A
HOH
101
5
HOH
HOH
601
A
HOH
102
5
HOH
HOH
602
A
HOH
103
5
HOH
HOH
603
A
HOH
104
5
HOH
HOH
604
A
HOH
105
5
HOH
HOH
605
A
HOH
106
5
HOH
HOH
606
A
HOH
107
5
HOH
HOH
607
A
HOH
108
5
HOH
HOH
608
A
HOH
109
5
HOH
HOH
609
A
HOH
110
5
HOH
HOH
610
A
HOH
111
5
HOH
HOH
611
A
HOH
112
5
HOH
HOH
612
A
HOH
113
5
HOH
HOH
613
A
HOH
114
5
HOH
HOH
614
A
HOH
115
5
HOH
HOH
615
A
HOH
116
5
HOH
HOH
616
A
HOH
117
5
HOH
HOH
617
A
HOH
118
5
HOH
HOH
618
A
HOH
119
5
HOH
HOH
619
A
HOH
120
5
HOH
HOH
620
A
HOH
121
5
HOH
HOH
621
A
HOH
122
5
HOH
HOH
622
A
HOH
123
5
HOH
HOH
623
A
HOH
124
5
HOH
HOH
624
A
HOH
125
5
HOH
HOH
625
A
HOH
126
5
HOH
HOH
626
A
HOH
127
5
HOH
HOH
627
A
HOH
128
5
HOH
HOH
628
A
HOH
129
5
HOH
HOH
629
A
HOH
130
5
HOH
HOH
630
A
HOH
131
5
HOH
HOH
631
A
HOH
132
5
HOH
HOH
632
A
HOH
133
5
HOH
HOH
633
A
HOH
134
5
HOH
HOH
634
A
HOH
135
5
HOH
HOH
635
A
HOH
136
5
HOH
HOH
636
A
HOH
137
5
HOH
HOH
637
A
HOH
138
5
HOH
HOH
638
A
HOH
139
5
HOH
HOH
639
A
HOH
140
5
HOH
HOH
640
A
n
1
-20
A
n
2
-19
A
n
3
-18
A
n
4
-17
A
n
5
-16
A
n
6
-15
A
n
7
-14
A
n
8
-13
A
n
9
-12
A
n
10
-11
A
n
11
-10
A
n
12
-9
A
n
13
-8
A
n
14
-7
A
n
15
-6
A
n
16
-5
A
n
17
-4
A
n
18
-3
A
n
19
-2
A
n
20
-1
A
n
21
0
A
n
22
1
A
n
23
2
A
n
24
3
A
n
25
4
A
n
26
5
A
n
27
6
A
n
28
7
A
n
29
8
A
n
30
9
A
THR
10
n
31
THR
10
A
VAL
11
n
32
VAL
11
A
ASP
12
n
33
ASP
12
A
GLY
13
n
34
GLY
13
A
LEU
14
n
35
LEU
14
A
ALA
15
n
36
ALA
15
A
THR
16
n
37
THR
16
A
ALA
17
n
38
ALA
17
A
VAL
18
n
39
VAL
18
A
ARG
19
n
40
ARG
19
A
GLY
20
n
41
GLY
20
A
GLY
21
n
42
GLY
21
A
ASP
22
n
43
ASP
22
A
ARG
23
n
44
ARG
23
A
ALA
24
n
45
ALA
24
A
ALA
25
n
46
ALA
25
A
LEU
26
n
47
LEU
26
A
PRO
27
n
48
PRO
27
A
ARG
28
n
49
ARG
28
A
ALA
29
n
50
ALA
29
A
ILE
30
n
51
ILE
30
A
THR
31
n
52
THR
31
A
LEU
32
n
53
LEU
32
A
VAL
33
n
54
VAL
33
A
GLU
34
n
55
GLU
34
A
SER
35
n
56
SER
35
A
THR
36
n
57
THR
36
A
ARG
37
n
58
ARG
37
A
PRO
38
n
59
PRO
38
A
ASP
39
n
60
ASP
39
A
HIS
40
n
61
HIS
40
A
ARG
41
n
62
ARG
41
A
GLU
42
n
63
GLU
42
A
GLN
43
n
64
GLN
43
A
ALA
44
n
65
ALA
44
A
GLN
45
n
66
GLN
45
A
GLN
46
n
67
GLN
46
A
LEU
47
n
68
LEU
47
A
LEU
48
n
69
LEU
48
A
LEU
49
n
70
LEU
49
A
ARG
50
n
71
ARG
50
A
LEU
51
n
72
LEU
51
A
LEU
52
n
73
LEU
52
A
PRO
53
n
74
PRO
53
A
ASP
54
n
75
ASP
54
A
SER
55
n
76
SER
55
A
GLY
56
n
77
GLY
56
A
ASN
57
n
78
ASN
57
A
ALA
58
n
79
ALA
58
A
HIS
59
n
80
HIS
59
A
ARG
60
n
81
ARG
60
A
VAL
61
n
82
VAL
61
A
GLY
62
n
83
GLY
62
A
ILE
63
n
84
ILE
63
A
THR
64
n
85
THR
64
A
GLY
65
n
86
GLY
65
A
VAL
66
n
87
VAL
66
A
PRO
67
n
88
PRO
67
A
GLY
68
n
89
GLY
68
A
VAL
69
n
90
VAL
69
A
GLY
70
n
91
GLY
70
A
LYS
71
n
92
LYS
71
A
SER
72
n
93
SER
72
A
THR
73
n
94
THR
73
A
ALA
74
n
95
ALA
74
A
ILE
75
n
96
ILE
75
A
GLU
76
n
97
GLU
76
A
ALA
77
n
98
ALA
77
A
LEU
78
n
99
LEU
78
A
GLY
79
n
100
GLY
79
A
MET
80
n
101
MET
80
A
HIS
81
n
102
HIS
81
A
LEU
82
n
103
LEU
82
A
ILE
83
n
104
ILE
83
A
GLU
84
n
105
GLU
84
A
ARG
85
n
106
ARG
85
A
GLY
86
n
107
GLY
86
A
HIS
87
n
108
HIS
87
A
ARG
88
n
109
ARG
88
A
VAL
89
n
110
VAL
89
A
ALA
90
n
111
ALA
90
A
VAL
91
n
112
VAL
91
A
LEU
92
n
113
LEU
92
A
ALA
93
n
114
ALA
93
A
VAL
94
n
115
VAL
94
A
ASP
95
n
116
ASP
95
A
n
117
96
A
n
118
97
A
n
119
98
A
n
120
99
A
n
121
100
A
n
122
101
A
n
123
102
A
n
124
103
A
n
125
104
A
n
126
105
A
n
127
106
A
n
128
107
A
n
129
108
A
n
130
109
A
n
131
110
A
n
132
111
A
MET
112
n
133
MET
112
A
ALA
113
n
134
ALA
113
A
ARG
114
n
135
ARG
114
A
LEU
115
n
136
LEU
115
A
ALA
116
n
137
ALA
116
A
VAL
117
n
138
VAL
117
A
HIS
118
n
139
HIS
118
A
PRO
119
n
140
PRO
119
A
ASN
120
n
141
ASN
120
A
ALA
121
n
142
ALA
121
A
TYR
122
n
143
TYR
122
A
ILE
123
n
144
ILE
123
A
ARG
124
n
145
ARG
124
A
n
146
125
A
n
147
126
A
n
148
127
A
n
149
128
A
n
150
129
A
n
151
130
A
THR
131
n
152
THR
131
A
LEU
132
n
153
LEU
132
A
GLY
133
n
154
GLY
133
A
GLY
134
n
155
GLY
134
A
VAL
135
n
156
VAL
135
A
THR
136
n
157
THR
136
A
ARG
137
n
158
ARG
137
A
ALA
138
n
159
ALA
138
A
THR
139
n
160
THR
139
A
ARG
140
n
161
ARG
140
A
GLU
141
n
162
GLU
141
A
THR
142
n
163
THR
142
A
VAL
143
n
164
VAL
143
A
VAL
144
n
165
VAL
144
A
LEU
145
n
166
LEU
145
A
LEU
146
n
167
LEU
146
A
GLU
147
n
168
GLU
147
A
ALA
148
n
169
ALA
148
A
ALA
149
n
170
ALA
149
A
GLY
150
n
171
GLY
150
A
PHE
151
n
172
PHE
151
A
ASP
152
n
173
ASP
152
A
VAL
153
n
174
VAL
153
A
ILE
154
n
175
ILE
154
A
LEU
155
n
176
LEU
155
A
ILE
156
n
177
ILE
156
A
GLU
157
n
178
GLU
157
A
THR
158
n
179
THR
158
A
VAL
159
n
180
VAL
159
A
GLY
160
n
181
GLY
160
A
VAL
161
n
182
VAL
161
A
GLY
162
n
183
GLY
162
A
GLN
163
n
184
GLN
163
A
SER
164
n
185
SER
164
A
GLU
165
n
186
GLU
165
A
VAL
166
n
187
VAL
166
A
ALA
167
n
188
ALA
167
A
VAL
168
n
189
VAL
168
A
ALA
169
n
190
ALA
169
A
ASN
170
n
191
ASN
170
A
MET
171
n
192
MET
171
A
VAL
172
n
193
VAL
172
A
ASP
173
n
194
ASP
173
A
THR
174
n
195
THR
174
A
PHE
175
n
196
PHE
175
A
VAL
176
n
197
VAL
176
A
LEU
177
n
198
LEU
177
A
LEU
178
n
199
LEU
178
A
THR
179
n
200
THR
179
A
LEU
180
n
201
LEU
180
A
ALA
181
n
202
ALA
181
A
ARG
182
n
203
ARG
182
A
THR
183
n
204
THR
183
A
GLY
184
n
205
GLY
184
A
ASP
185
n
206
ASP
185
A
GLN
186
n
207
GLN
186
A
LEU
187
n
208
LEU
187
A
GLN
188
n
209
GLN
188
A
GLY
189
n
210
GLY
189
A
ILE
190
n
211
ILE
190
A
LYS
191
n
212
LYS
191
A
LYS
192
n
213
LYS
192
A
GLY
193
n
214
GLY
193
A
VAL
194
n
215
VAL
194
A
LEU
195
n
216
LEU
195
A
GLU
196
n
217
GLU
196
A
LEU
197
n
218
LEU
197
A
ALA
198
n
219
ALA
198
A
ASP
199
n
220
ASP
199
A
ILE
200
n
221
ILE
200
A
VAL
201
n
222
VAL
201
A
VAL
202
n
223
VAL
202
A
VAL
203
n
224
VAL
203
A
ASN
204
n
225
ASN
204
A
LYS
205
n
226
LYS
205
A
ALA
206
n
227
ALA
206
A
ASP
207
n
228
ASP
207
A
GLY
208
n
229
GLY
208
A
GLU
209
n
230
GLU
209
A
HIS
210
n
231
HIS
210
A
HIS
211
n
232
HIS
211
A
LYS
212
n
233
LYS
212
A
GLU
213
n
234
GLU
213
A
ALA
214
n
235
ALA
214
A
ARG
215
n
236
ARG
215
A
LEU
216
n
237
LEU
216
A
ALA
217
n
238
ALA
217
A
ALA
218
n
239
ALA
218
A
ARG
219
n
240
ARG
219
A
GLU
220
n
241
GLU
220
A
LEU
221
n
242
LEU
221
A
SER
222
n
243
SER
222
A
ALA
223
n
244
ALA
223
A
ALA
224
n
245
ALA
224
A
ILE
225
n
246
ILE
225
A
ARG
226
n
247
ARG
226
A
LEU
227
n
248
LEU
227
A
ILE
228
n
249
ILE
228
A
TYR
229
n
250
TYR
229
A
PRO
230
n
251
PRO
230
A
ARG
231
n
252
ARG
231
A
GLU
232
n
253
GLU
232
A
ALA
233
n
254
ALA
233
A
LEU
234
n
255
LEU
234
A
TRP
235
n
256
TRP
235
A
ARG
236
n
257
ARG
236
A
PRO
237
n
258
PRO
237
A
PRO
238
n
259
PRO
238
A
VAL
239
n
260
VAL
239
A
LEU
240
n
261
LEU
240
A
THR
241
n
262
THR
241
A
MET
242
n
263
MET
242
A
SER
243
n
264
SER
243
A
ALA
244
n
265
ALA
244
A
VAL
245
n
266
VAL
245
A
GLU
246
n
267
GLU
246
A
GLY
247
n
268
GLY
247
A
ARG
248
n
269
ARG
248
A
GLY
249
n
270
GLY
249
A
LEU
250
n
271
LEU
250
A
ALA
251
n
272
ALA
251
A
GLU
252
n
273
GLU
252
A
LEU
253
n
274
LEU
253
A
TRP
254
n
275
TRP
254
A
ASP
255
n
276
ASP
255
A
THR
256
n
277
THR
256
A
VAL
257
n
278
VAL
257
A
GLU
258
n
279
GLU
258
A
ARG
259
n
280
ARG
259
A
HIS
260
n
281
HIS
260
A
ARG
261
n
282
ARG
261
A
GLN
262
n
283
GLN
262
A
VAL
263
n
284
VAL
263
A
LEU
264
n
285
LEU
264
A
THR
265
n
286
THR
265
A
GLY
266
n
287
GLY
266
A
ALA
267
n
288
ALA
267
A
GLY
268
n
289
GLY
268
A
GLU
269
n
290
GLU
269
A
PHE
270
n
291
PHE
270
A
ASP
271
n
292
ASP
271
A
ALA
272
n
293
ALA
272
A
ARG
273
n
294
ARG
273
A
ARG
274
n
295
ARG
274
A
ARG
275
n
296
ARG
275
A
ASP
276
n
297
ASP
276
A
GLN
277
n
298
GLN
277
A
GLN
278
n
299
GLN
278
A
VAL
279
n
300
VAL
279
A
ASP
280
n
301
ASP
280
A
TRP
281
n
302
TRP
281
A
THR
282
n
303
THR
282
A
TRP
283
n
304
TRP
283
A
GLN
284
n
305
GLN
284
A
LEU
285
n
306
LEU
285
A
VAL
286
n
307
VAL
286
A
ARG
287
n
308
ARG
287
A
ASP
288
n
309
ASP
288
A
ALA
289
n
310
ALA
289
A
VAL
290
n
311
VAL
290
A
LEU
291
n
312
LEU
291
A
ASP
292
n
313
ASP
292
A
ARG
293
n
314
ARG
293
A
VAL
294
n
315
VAL
294
A
TRP
295
n
316
TRP
295
A
SER
296
n
317
SER
296
A
ASN
297
n
318
ASN
297
A
PRO
298
n
319
PRO
298
A
THR
299
n
320
THR
299
A
VAL
300
n
321
VAL
300
A
ARG
301
n
322
ARG
301
A
LYS
302
n
323
LYS
302
A
VAL
303
n
324
VAL
303
A
ARG
304
n
325
ARG
304
A
SER
305
n
326
SER
305
A
GLU
306
n
327
GLU
306
A
LEU
307
n
328
LEU
307
A
GLU
308
n
329
GLU
308
A
ARG
309
n
330
ARG
309
A
ARG
310
n
331
ARG
310
A
VAL
311
n
332
VAL
311
A
ARG
312
n
333
ARG
312
A
ALA
313
n
334
ALA
313
A
GLY
314
n
335
GLY
314
A
GLU
315
n
336
GLU
315
A
LEU
316
n
337
LEU
316
A
THR
317
n
338
THR
317
A
PRO
318
n
339
PRO
318
A
ALA
319
n
340
ALA
319
A
LEU
320
n
341
LEU
320
A
ALA
321
n
342
ALA
321
A
ALA
322
n
343
ALA
322
A
GLN
323
n
344
GLN
323
A
GLN
324
n
345
GLN
324
A
ILE
325
n
346
ILE
325
A
LEU
326
n
347
LEU
326
A
GLU
327
n
348
GLU
327
A
ILE
328
n
349
ILE
328
A
ALA
329
n
350
ALA
329
A
ASN
330
n
351
ASN
330
A
LEU
331
n
352
LEU
331
A
THR
332
n
353
THR
332
A
ASP
333
n
354
ASP
333
A
n
355
334
A
0.3515
0.2641
0.4984
0.6269
0.2658
0.7407
0.1077
0.0847
-0.0676
0.0830
-0.0036
-0.0849
0.1550
0.1298
-0.1041
0.0341
0.0271
-0.0212
0.0920
-0.0180
0.0608
refined
12.3135
28.1008
-8.1957
X-RAY DIFFRACTION
A
10
A
333
X-RAY DIFFRACTION
1
A
335
A
404
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
2
dimeric
7280
-56
26260
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_554
-x,y,-z-1/2
crystal symmetry operation
0.0000000000
0.0000000000
-33.2300000000
A
O
TYR
122
A
O
TYR
143
A
N
VAL
91
A
N
VAL
112
A
N
ALA
90
A
N
ALA
111
A
O
LEU
155
A
O
LEU
176
A
O
ILE
154
A
O
ILE
175
A
N
VAL
61
A
N
VAL
82
A
N
GLY
62
A
N
GLY
83
A
O
VAL
176
A
O
VAL
197
A
N
LEU
177
A
N
LEU
198
A
O
VAL
202
A
O
VAL
223
A
N
VAL
203
A
N
VAL
224
A
O
LEU
240
A
O
LEU
261
1
A
CG
ARG
23
A
CG
ARG
44
1
Y
1
A
CD
ARG
23
A
CD
ARG
44
1
Y
1
A
NE
ARG
23
A
NE
ARG
44
1
Y
1
A
CZ
ARG
23
A
CZ
ARG
44
1
Y
1
A
NH1
ARG
23
A
NH1
ARG
44
1
Y
1
A
NH2
ARG
23
A
NH2
ARG
44
1
Y
1
A
OG
SER
35
A
OG
SER
56
1
Y
1
A
OG1
THR
36
A
OG1
THR
57
1
Y
1
A
CG2
THR
36
A
CG2
THR
57
1
Y
1
A
CG
ARG
37
A
CG
ARG
58
1
Y
1
A
CD
ARG
37
A
CD
ARG
58
1
Y
1
A
NE
ARG
37
A
NE
ARG
58
1
Y
1
A
CZ
ARG
37
A
CZ
ARG
58
1
Y
1
A
NH1
ARG
37
A
NH1
ARG
58
1
Y
1
A
NH2
ARG
37
A
NH2
ARG
58
1
Y
1
A
CG
ARG
41
A
CG
ARG
62
1
Y
1
A
CD
ARG
41
A
CD
ARG
62
1
Y
1
A
NE
ARG
41
A
NE
ARG
62
1
Y
1
A
CZ
ARG
41
A
CZ
ARG
62
1
Y
1
A
NH1
ARG
41
A
NH1
ARG
62
1
Y
1
A
NH2
ARG
41
A
NH2
ARG
62
1
Y
1
A
CG
GLN
43
A
CG
GLN
64
1
Y
1
A
CD
GLN
43
A
CD
GLN
64
1
Y
1
A
OE1
GLN
43
A
OE1
GLN
64
1
Y
1
A
NE2
GLN
43
A
NE2
GLN
64
1
Y
1
A
CG
ARG
50
A
CG
ARG
71
1
Y
1
A
CD
ARG
50
A
CD
ARG
71
1
Y
1
A
NE
ARG
50
A
NE
ARG
71
1
Y
1
A
CZ
ARG
50
A
CZ
ARG
71
1
Y
1
A
NH1
ARG
50
A
NH1
ARG
71
1
Y
1
A
NH2
ARG
50
A
NH2
ARG
71
1
Y
1
A
CG
GLU
76
A
CG
GLU
97
1
Y
1
A
CD
GLU
76
A
CD
GLU
97
1
Y
1
A
OE1
GLU
76
A
OE1
GLU
97
1
Y
1
A
OE2
GLU
76
A
OE2
GLU
97
1
Y
1
A
CG
ASP
95
A
CG
ASP
116
1
Y
1
A
OD1
ASP
95
A
OD1
ASP
116
1
Y
1
A
OD2
ASP
95
A
OD2
ASP
116
1
Y
1
A
CG
ARG
114
A
CG
ARG
135
1
Y
1
A
CD
ARG
114
A
CD
ARG
135
1
Y
1
A
NE
ARG
114
A
NE
ARG
135
1
Y
1
A
CZ
ARG
114
A
CZ
ARG
135
1
Y
1
A
NH1
ARG
114
A
NH1
ARG
135
1
Y
1
A
NH2
ARG
114
A
NH2
ARG
135
1
Y
1
A
CG1
VAL
117
A
CG1
VAL
138
1
Y
1
A
CG2
VAL
117
A
CG2
VAL
138
1
Y
1
A
CG
ARG
124
A
CG
ARG
145
1
Y
1
A
CD
ARG
124
A
CD
ARG
145
1
Y
1
A
NE
ARG
124
A
NE
ARG
145
1
Y
1
A
CZ
ARG
124
A
CZ
ARG
145
1
Y
1
A
NH1
ARG
124
A
NH1
ARG
145
1
Y
1
A
NH2
ARG
124
A
NH2
ARG
145
1
Y
1
A
OG1
THR
131
A
OG1
THR
152
1
Y
1
A
CG2
THR
131
A
CG2
THR
152
1
Y
1
A
CG
ARG
137
A
CG
ARG
158
1
Y
1
A
CD
ARG
137
A
CD
ARG
158
1
Y
1
A
NE
ARG
137
A
NE
ARG
158
1
Y
1
A
CZ
ARG
137
A
CZ
ARG
158
1
Y
1
A
NH1
ARG
137
A
NH1
ARG
158
1
Y
1
A
NH2
ARG
137
A
NH2
ARG
158
1
Y
1
A
CG1
VAL
161
A
CG1
VAL
182
1
Y
1
A
CG2
VAL
161
A
CG2
VAL
182
1
Y
1
A
CG
LYS
191
A
CG
LYS
212
1
Y
1
A
CD
LYS
191
A
CD
LYS
212
1
Y
1
A
CE
LYS
191
A
CE
LYS
212
1
Y
1
A
NZ
LYS
191
A
NZ
LYS
212
1
Y
1
A
CG
GLU
209
A
CG
GLU
230
1
Y
1
A
CD
GLU
209
A
CD
GLU
230
1
Y
1
A
OE1
GLU
209
A
OE1
GLU
230
1
Y
1
A
OE2
GLU
209
A
OE2
GLU
230
1
Y
1
A
CG
LYS
212
A
CG
LYS
233
1
Y
1
A
CD
LYS
212
A
CD
LYS
233
1
Y
1
A
CE
LYS
212
A
CE
LYS
233
1
Y
1
A
NZ
LYS
212
A
NZ
LYS
233
1
Y
1
A
CG
ARG
215
A
CG
ARG
236
1
Y
1
A
CD
ARG
215
A
CD
ARG
236
1
Y
1
A
NE
ARG
215
A
NE
ARG
236
1
Y
1
A
CZ
ARG
215
A
CZ
ARG
236
1
Y
1
A
NH1
ARG
215
A
NH1
ARG
236
1
Y
1
A
NH2
ARG
215
A
NH2
ARG
236
1
Y
1
A
CG
ARG
219
A
CG
ARG
240
1
Y
1
A
CD
ARG
219
A
CD
ARG
240
1
Y
1
A
NE
ARG
219
A
NE
ARG
240
1
Y
1
A
CZ
ARG
219
A
CZ
ARG
240
1
Y
1
A
NH1
ARG
219
A
NH1
ARG
240
1
Y
1
A
NH2
ARG
219
A
NH2
ARG
240
1
Y
1
A
CG
ARG
248
A
CG
ARG
269
1
Y
1
A
CD
ARG
248
A
CD
ARG
269
1
Y
1
A
NE
ARG
248
A
NE
ARG
269
1
Y
1
A
CZ
ARG
248
A
CZ
ARG
269
1
Y
1
A
NH1
ARG
248
A
NH1
ARG
269
1
Y
1
A
NH2
ARG
248
A
NH2
ARG
269
1
Y
1
A
CG
ASP
292
A
CG
ASP
313
1
Y
1
A
OD1
ASP
292
A
OD1
ASP
313
1
Y
1
A
OD2
ASP
292
A
OD2
ASP
313
1
Y
1
A
CG
ARG
293
A
CG
ARG
314
1
Y
1
A
CD
ARG
293
A
CD
ARG
314
1
Y
1
A
NE
ARG
293
A
NE
ARG
314
1
Y
1
A
CZ
ARG
293
A
CZ
ARG
314
1
Y
1
A
NH1
ARG
293
A
NH1
ARG
314
1
Y
1
A
NH2
ARG
293
A
NH2
ARG
314
1
Y
1
A
CG
TRP
295
A
CG
TRP
316
1
Y
1
A
CD1
TRP
295
A
CD1
TRP
316
1
Y
1
A
CD2
TRP
295
A
CD2
TRP
316
1
Y
1
A
NE1
TRP
295
A
NE1
TRP
316
1
Y
1
A
CE2
TRP
295
A
CE2
TRP
316
1
Y
1
A
CE3
TRP
295
A
CE3
TRP
316
1
Y
1
A
CZ2
TRP
295
A
CZ2
TRP
316
1
Y
1
A
CZ3
TRP
295
A
CZ3
TRP
316
1
Y
1
A
CH2
TRP
295
A
CH2
TRP
316
1
Y
1
A
CG
ARG
301
A
CG
ARG
322
1
Y
1
A
CD
ARG
301
A
CD
ARG
322
1
Y
1
A
NE
ARG
301
A
NE
ARG
322
1
Y
1
A
CZ
ARG
301
A
CZ
ARG
322
1
Y
1
A
NH1
ARG
301
A
NH1
ARG
322
1
Y
1
A
NH2
ARG
301
A
NH2
ARG
322
1
Y
1
A
CG
LYS
302
A
CG
LYS
323
1
Y
1
A
CD
LYS
302
A
CD
LYS
323
1
Y
1
A
CE
LYS
302
A
CE
LYS
323
1
Y
1
A
NZ
LYS
302
A
NZ
LYS
323
1
Y
1
A
CG
GLN
324
A
CG
GLN
345
1
Y
1
A
CD
GLN
324
A
CD
GLN
345
1
Y
1
A
OE1
GLN
324
A
OE1
GLN
345
1
Y
1
A
NE2
GLN
324
A
NE2
GLN
345
1
Y
1
A
MET
-20
A
MET
1
1
Y
1
A
ALA
-19
A
ALA
2
1
Y
1
A
HIS
-18
A
HIS
3
1
Y
1
A
HIS
-17
A
HIS
4
1
Y
1
A
HIS
-16
A
HIS
5
1
Y
1
A
HIS
-15
A
HIS
6
1
Y
1
A
HIS
-14
A
HIS
7
1
Y
1
A
HIS
-13
A
HIS
8
1
Y
1
A
MET
-12
A
MET
9
1
Y
1
A
GLY
-11
A
GLY
10
1
Y
1
A
THR
-10
A
THR
11
1
Y
1
A
LEU
-9
A
LEU
12
1
Y
1
A
GLU
-8
A
GLU
13
1
Y
1
A
ALA
-7
A
ALA
14
1
Y
1
A
GLN
-6
A
GLN
15
1
Y
1
A
THR
-5
A
THR
16
1
Y
1
A
GLN
-4
A
GLN
17
1
Y
1
A
GLY
-3
A
GLY
18
1
Y
1
A
PRO
-2
A
PRO
19
1
Y
1
A
GLY
-1
A
GLY
20
1
Y
1
A
SER
0
A
SER
21
1
Y
1
A
MET
1
A
MET
22
1
Y
1
A
MET
2
A
MET
23
1
Y
1
A
ALA
3
A
ALA
24
1
Y
1
A
ALA
4
A
ALA
25
1
Y
1
A
SER
5
A
SER
26
1
Y
1
A
HIS
6
A
HIS
27
1
Y
1
A
ASP
7
A
ASP
28
1
Y
1
A
ASP
8
A
ASP
29
1
Y
1
A
ASP
9
A
ASP
30
1
Y
1
A
PRO
96
A
PRO
117
1
Y
1
A
SER
97
A
SER
118
1
Y
1
A
SER
98
A
SER
119
1
Y
1
A
THR
99
A
THR
120
1
Y
1
A
ARG
100
A
ARG
121
1
Y
1
A
THR
101
A
THR
122
1
Y
1
A
GLY
102
A
GLY
123
1
Y
1
A
GLY
103
A
GLY
124
1
Y
1
A
SER
104
A
SER
125
1
Y
1
A
ILE
105
A
ILE
126
1
Y
1
A
LEU
106
A
LEU
127
1
Y
1
A
GLY
107
A
GLY
128
1
Y
1
A
ASP
108
A
ASP
129
1
Y
1
A
LYS
109
A
LYS
130
1
Y
1
A
THR
110
A
THR
131
1
Y
1
A
ARG
111
A
ARG
132
1
Y
1
A
PRO
125
A
PRO
146
1
Y
1
A
SER
126
A
SER
147
1
Y
1
A
PRO
127
A
PRO
148
1
Y
1
A
THR
128
A
THR
149
1
Y
1
A
SER
129
A
SER
150
1
Y
1
A
GLY
130
A
GLY
151
1
Y
1
A
ARG
334
A
ARG
355
1
Y
1
A
A
O
O
ILE
HOH
190
600
1.99
1
6.17
0.90
118.30
124.47
A
A
A
CB
CG
OD1
ASP
ASP
ASP
185
185
185
N
1
3.94
0.50
120.30
124.24
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
236
236
236
N
1
A
A
O
O
HOH
HOH
545
603
2.15
1_555
8_555
1
A
GLN
163
-95.09
30.99
1
A
ALA
181
-90.82
51.01
87.510
38.2709
15.750
1.9700
0.0000
0.0000
-1.3700
0.0000
-0.6000
0.9520
0.9370
U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.2269
0.1889
0.1908
2.0000
45.4500
1431
28336
5.1000
99.9500
1.000
0.500
6.2730
0.0880
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1430
0.1380
0.8000
0.8000
1.2000
3md0
MAXIMUM LIKELIHOOD
MASK
2.0000
45.4500
140
2386
48
0
2198
0.013
0.019
2279
0.001
0.020
2219
1.514
1.985
3111
0.832
3.000
5042
4.994
5.000
301
30.771
23.448
87
12.750
15.000
341
17.392
15.000
20
0.086
0.200
385
0.006
0.020
2581
0.001
0.020
487
0.2530
0.2210
2.0520
128
1910
2038
20
100.0000
36.499
2.000
50
4GT1
28351
28337
-3.000
0.048
1
29.530
8.1
100.000
0.465
2.000
2.050
4.660
16759
2041
1
100.000
0.361
2.050
2.110
6.050
16503
2017
1
100.000
0.295
2.110
2.170
7.460
16013
1961
1
100.000
0.238
2.170
2.240
9.240
15644
1907
1
100.000
0.199
2.240
2.310
10.960
15148
1847
1
99.900
0.159
2.310
2.390
13.280
14742
1805
1
100.000
0.143
2.390
2.480
14.700
13982
1712
1
100.000
0.113
2.480
2.580
18.380
13620
1665
1
100.000
0.094
2.580
2.700
21.830
13107
1607
1
100.000
0.072
2.700
2.830
27.250
12545
1537
1
100.000
0.061
2.830
2.980
31.720
11973
1472
1
99.900
0.048
2.980
3.160
39.090
11214
1390
1
100.000
0.037
3.160
3.380
50.040
10331
1291
1
100.000
0.030
3.380
3.650
59.950
9780
1228
1
100.000
0.026
3.650
4.000
67.060
8870
1139
1
100.000
0.022
4.000
4.470
75.000
7928
1039
1
100.000
0.019
4.470
5.160
78.910
7096
909
1
100.000
0.022
5.160
6.320
72.050
6212
784
1
100.000
0.016
6.320
8.940
83.010
4807
620
1
99.700
0.013
8.940
89.320
2547
366
1
97.100
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.7.0029
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
XDS
Crystal structure of a MeaB- and MMAA-like GTPase from Mycobacterium tuberculosis bound to 2'-deoxyguanosine diphosphate
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
THR
10
A
THR
31
HELX_P
A
GLY
21
A
GLY
42
1
1
12
A
ALA
24
A
ALA
45
HELX_P
A
SER
35
A
SER
56
1
2
12
A
ARG
37
A
ARG
58
HELX_P
A
LEU
52
A
LEU
73
1
3
16
A
PRO
53
A
PRO
74
HELX_P
A
SER
55
A
SER
76
5
4
3
A
GLY
70
A
GLY
91
HELX_P
A
ARG
85
A
ARG
106
1
5
16
A
ALA
113
A
ALA
134
HELX_P
A
VAL
117
A
VAL
138
1
6
5
A
LEU
132
A
LEU
153
HELX_P
A
ALA
149
A
ALA
170
1
7
18
A
GLN
163
A
GLN
184
HELX_P
A
ASN
170
A
ASN
191
1
8
8
A
VAL
194
A
VAL
215
HELX_P
A
ALA
198
A
ALA
219
5
9
5
A
ASP
207
A
ASP
228
HELX_P
A
GLU
209
A
GLU
230
5
10
3
A
HIS
210
A
HIS
231
HELX_P
A
TYR
229
A
TYR
250
1
11
20
A
SER
243
A
SER
264
HELX_P
A
GLY
247
A
GLY
268
5
12
5
A
GLY
249
A
GLY
270
HELX_P
A
ALA
267
A
ALA
288
1
13
19
A
GLY
268
A
GLY
289
HELX_P
A
SER
296
A
SER
317
1
14
29
A
ASN
297
A
ASN
318
HELX_P
A
ALA
313
A
ALA
334
1
15
17
A
THR
317
A
THR
338
HELX_P
A
THR
332
A
THR
353
1
16
16
HYDROLASE
Structural Genomics, NIAID, National Institute of Allergy and Infectious Diseases, Seattle Structural Genomics Center for Infectious Disease, SSGCID, Mycobacterium, GTPase, ATPase, substrate-specificity, hydrolase, G-protein, Ras-like GTPase, ArgK superfamily, chain swapped homodimer
Y1496_MYCTU
UNP
1
1
P63577
MMAASHDDDTVDGLATAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM
HLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVG
VGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVL
TMSAVEGRGLAELWDTVERHRQVLTGAGEFDARRRDQQVDWTWQLVRDAVLDRVWSNPTVRKVRSELERRVRAGELTPAL
AAQQILEIANLTDR
1
334
4GT1
1
334
P63577
A
1
22
355
1
initiating methionine
MET
-20
4GT1
A
P63577
UNP
1
1
expression tag
ALA
-19
4GT1
A
P63577
UNP
2
1
expression tag
HIS
-18
4GT1
A
P63577
UNP
3
1
expression tag
HIS
-17
4GT1
A
P63577
UNP
4
1
expression tag
HIS
-16
4GT1
A
P63577
UNP
5
1
expression tag
HIS
-15
4GT1
A
P63577
UNP
6
1
expression tag
HIS
-14
4GT1
A
P63577
UNP
7
1
expression tag
HIS
-13
4GT1
A
P63577
UNP
8
1
expression tag
MET
-12
4GT1
A
P63577
UNP
9
1
expression tag
GLY
-11
4GT1
A
P63577
UNP
10
1
expression tag
THR
-10
4GT1
A
P63577
UNP
11
1
expression tag
LEU
-9
4GT1
A
P63577
UNP
12
1
expression tag
GLU
-8
4GT1
A
P63577
UNP
13
1
expression tag
ALA
-7
4GT1
A
P63577
UNP
14
1
expression tag
GLN
-6
4GT1
A
P63577
UNP
15
1
expression tag
THR
-5
4GT1
A
P63577
UNP
16
1
expression tag
GLN
-4
4GT1
A
P63577
UNP
17
1
expression tag
GLY
-3
4GT1
A
P63577
UNP
18
1
expression tag
PRO
-2
4GT1
A
P63577
UNP
19
1
expression tag
GLY
-1
4GT1
A
P63577
UNP
20
1
expression tag
SER
0
4GT1
A
P63577
UNP
21
7
parallel
parallel
parallel
parallel
parallel
parallel
A
ALA
121
A
ALA
142
A
ARG
124
A
ARG
145
A
VAL
89
A
VAL
110
A
VAL
94
A
VAL
115
A
VAL
153
A
VAL
174
A
THR
158
A
THR
179
A
HIS
59
A
HIS
80
A
THR
64
A
THR
85
A
THR
174
A
THR
195
A
LEU
180
A
LEU
201
A
ILE
200
A
ILE
221
A
ASN
204
A
ASN
225
A
VAL
239
A
VAL
260
A
THR
241
A
THR
262
BINDING SITE FOR RESIDUE DGI A 401
A
DGI
401
Software
16
BINDING SITE FOR RESIDUE PGE A 402
A
PGE
402
Software
7
BINDING SITE FOR RESIDUE PGE A 403
A
PGE
403
Software
11
BINDING SITE FOR RESIDUE CL A 404
A
CL
404
Software
4
A
GLY
68
A
GLY
89
16
1_555
A
VAL
69
A
VAL
90
16
1_555
A
GLY
70
A
GLY
91
16
1_555
A
LYS
71
A
LYS
92
16
1_555
A
SER
72
A
SER
93
16
1_555
A
THR
73
A
THR
94
16
1_555
A
ASN
204
A
ASN
225
16
1_555
A
LYS
205
A
LYS
226
16
1_555
A
ASP
207
A
ASP
228
16
1_555
A
SER
243
A
SER
264
16
1_555
A
ALA
244
A
ALA
265
16
1_555
A
VAL
245
A
VAL
266
16
1_555
A
HOH
568
F
HOH
16
1_555
A
HOH
617
F
HOH
16
1_555
A
HOH
618
F
HOH
16
1_555
A
HOH
629
F
HOH
16
1_555
A
GLU
232
A
GLU
253
7
1_555
A
ALA
233
A
ALA
254
7
1_555
A
LEU
234
A
LEU
255
7
1_555
A
TRP
235
A
TRP
256
7
1_555
A
ARG
236
A
ARG
257
7
1_555
A
HOH
615
F
HOH
7
1_555
A
HOH
620
F
HOH
7
1_555
A
LYS
192
A
LYS
213
11
3_554
A
GLU
196
A
GLU
217
11
1_555
A
LEU
197
A
LEU
218
11
1_555
A
ALA
198
A
ALA
219
11
1_555
A
ASP
199
A
ASP
220
11
1_555
A
TYR
229
A
TYR
250
11
1_555
A
GLU
232
A
GLU
253
11
1_555
A
TRP
235
A
TRP
256
11
1_555
A
ARG
273
A
ARG
294
11
1_555
A
HOH
541
F
HOH
11
1_555
A
HOH
542
F
HOH
11
1_555
A
GLY
268
A
GLY
289
4
1_555
A
PHE
270
A
PHE
291
4
1_555
A
ASP
271
A
ASP
292
4
1_555
A
HOH
616
F
HOH
4
1_555
20
C 2 2 21