0.015341
0.000000
0.000000
0.000000
0.014064
0.000000
0.000000
0.000000
0.012506
0.00000
0.00000
0.00000
Clark, S.A.
Davulcu, O.
Chapman, M.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
65.184
71.103
79.962
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C7 H15 N3 O2
173.213
N5-IMINOETHYL-L-ORNITHINE
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
N O3 -1
62.005
NITRATE ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
R
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
S
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
N
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
Y
184
N
C
Y
185
N
N
Y
186
N
C
Y
187
N
C
Y
188
N
N
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
S
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
N
N
231
N
C
N
232
N
C
N
233
N
N
N
234
N
C
N
235
N
O
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
N
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
S
N
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
MG
N
320
N
N
N
321
N
O
N
322
N
O
N
323
N
O
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
C
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
N
369
N
O
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
R
C
N
383
N
O
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
N
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
N
433
N
O
N
434
N
O
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
N
N
447
S
C
N
448
N
C
N
449
N
O
N
450
N
C
N
451
N
C
N
452
N
C
N
453
N
O
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
doub
N
39
N
sing
N
40
N
sing
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
Y
184
N
sing
Y
185
N
doub
Y
186
N
doub
N
187
N
sing
Y
188
N
sing
N
189
N
sing
Y
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
doub
Y
395
N
sing
Y
396
N
sing
N
397
N
sing
Y
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
Y
418
N
doub
Y
419
N
sing
Y
420
N
sing
N
421
N
sing
Y
422
N
doub
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
doub
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
427
212
217
10.1016/j.bbrc.2012.09.053
22995310
Crystal structures of arginine kinase in complex with ADP, nitrate, and various phosphagen analogs.
2012
10.2210/pdb4gw0/pdb
pdb_00004gw0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2002-09-13
MAR CCD 165 mm
SINGLE WAVELENGTH
M
x-ray
1
1.541
1.0
1.541
ROTATING ANODE
RIGAKU RUH2R
40249.758
Arginine kinase
2.7.3.3
E103N, D112G, G116A
1
man
polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
173.213
N5-IMINOETHYL-L-ORNITHINE
1
syn
non-polymer
62.005
NITRATE ION
1
syn
non-polymer
18.015
water
182
nat
water
AK
no
no
MVDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGP
LFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSME
DELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLK
TVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEG
GVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
MVDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGP
LFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSME
DELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLK
TVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEG
GVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Atlantic horseshoe crab
sample
6850
Limulus polyphemus
562
Escherichia coli
PLASMID
PET22B
1
2.30
46.57
VAPOR DIFFUSION, HANGING DROP
8.0
Protein at 30 mg/ml, 26% PEG 6000, 0.05M HEPES, 0.1M Magnesium chloride, 0.02M Potassium ADP, 0.25M Sodium nitrate, 0.025M Sodium azide, 0.005M DTT, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-10-03
1
1
2012-10-31
1
2
2023-09-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Same protein in an unliganded form.
Same protein bound to L-arginine, MgADP, and nitrate.
Same protein bound to L-citrulline and MgADP.
Same protein bound to D-arginine, MgADP, and nitrate.
The same protein bound to L-ornithine, MgADP, and nitrate.
RCSB
Y
RCSB
2012-08-31
REL
REL
ADP
ADENOSINE-5'-DIPHOSPHATE
MG
MAGNESIUM ION
ILO
N5-IMINOETHYL-L-ORNITHINE
NO3
NITRATE ION
HOH
water
1M15
PDB ENTRY 1M15
PDB
experimental model
ADP
400
2
ADP
ADP
401
A
MG
408
3
MG
MG
402
A
ILO
403
4
ILO
ILO
403
A
NO3
401
5
NO3
NO3
404
A
HOH
1
6
HOH
HOH
501
A
HOH
2
6
HOH
HOH
502
A
HOH
3
6
HOH
HOH
503
A
HOH
4
6
HOH
HOH
504
A
HOH
5
6
HOH
HOH
505
A
HOH
6
6
HOH
HOH
506
A
HOH
7
6
HOH
HOH
507
A
HOH
8
6
HOH
HOH
508
A
HOH
9
6
HOH
HOH
509
A
HOH
10
6
HOH
HOH
510
A
HOH
11
6
HOH
HOH
511
A
HOH
12
6
HOH
HOH
512
A
HOH
13
6
HOH
HOH
513
A
HOH
14
6
HOH
HOH
514
A
HOH
15
6
HOH
HOH
515
A
HOH
16
6
HOH
HOH
516
A
HOH
17
6
HOH
HOH
517
A
HOH
18
6
HOH
HOH
518
A
HOH
19
6
HOH
HOH
519
A
HOH
20
6
HOH
HOH
520
A
HOH
21
6
HOH
HOH
521
A
HOH
22
6
HOH
HOH
522
A
HOH
23
6
HOH
HOH
523
A
HOH
24
6
HOH
HOH
524
A
HOH
25
6
HOH
HOH
525
A
HOH
26
6
HOH
HOH
526
A
HOH
27
6
HOH
HOH
527
A
HOH
28
6
HOH
HOH
528
A
HOH
29
6
HOH
HOH
529
A
HOH
30
6
HOH
HOH
530
A
HOH
31
6
HOH
HOH
531
A
HOH
32
6
HOH
HOH
532
A
HOH
33
6
HOH
HOH
533
A
HOH
34
6
HOH
HOH
534
A
HOH
35
6
HOH
HOH
535
A
HOH
36
6
HOH
HOH
536
A
HOH
37
6
HOH
HOH
537
A
HOH
38
6
HOH
HOH
538
A
HOH
39
6
HOH
HOH
539
A
HOH
40
6
HOH
HOH
540
A
HOH
41
6
HOH
HOH
541
A
HOH
42
6
HOH
HOH
542
A
HOH
43
6
HOH
HOH
543
A
HOH
44
6
HOH
HOH
544
A
HOH
45
6
HOH
HOH
545
A
HOH
46
6
HOH
HOH
546
A
HOH
47
6
HOH
HOH
547
A
HOH
48
6
HOH
HOH
548
A
HOH
49
6
HOH
HOH
549
A
HOH
50
6
HOH
HOH
550
A
HOH
51
6
HOH
HOH
551
A
HOH
52
6
HOH
HOH
552
A
HOH
53
6
HOH
HOH
553
A
HOH
54
6
HOH
HOH
554
A
HOH
55
6
HOH
HOH
555
A
HOH
56
6
HOH
HOH
556
A
HOH
57
6
HOH
HOH
557
A
HOH
58
6
HOH
HOH
558
A
HOH
59
6
HOH
HOH
559
A
HOH
60
6
HOH
HOH
560
A
HOH
61
6
HOH
HOH
561
A
HOH
62
6
HOH
HOH
562
A
HOH
63
6
HOH
HOH
563
A
HOH
64
6
HOH
HOH
564
A
HOH
65
6
HOH
HOH
565
A
HOH
66
6
HOH
HOH
566
A
HOH
67
6
HOH
HOH
567
A
HOH
68
6
HOH
HOH
568
A
HOH
69
6
HOH
HOH
569
A
HOH
70
6
HOH
HOH
570
A
HOH
71
6
HOH
HOH
571
A
HOH
72
6
HOH
HOH
572
A
HOH
73
6
HOH
HOH
573
A
HOH
74
6
HOH
HOH
574
A
HOH
75
6
HOH
HOH
575
A
HOH
76
6
HOH
HOH
576
A
HOH
77
6
HOH
HOH
577
A
HOH
78
6
HOH
HOH
578
A
HOH
79
6
HOH
HOH
579
A
HOH
80
6
HOH
HOH
580
A
HOH
81
6
HOH
HOH
581
A
HOH
82
6
HOH
HOH
582
A
HOH
83
6
HOH
HOH
583
A
HOH
84
6
HOH
HOH
584
A
HOH
85
6
HOH
HOH
585
A
HOH
86
6
HOH
HOH
586
A
HOH
87
6
HOH
HOH
587
A
HOH
88
6
HOH
HOH
588
A
HOH
89
6
HOH
HOH
589
A
HOH
90
6
HOH
HOH
590
A
HOH
92
6
HOH
HOH
591
A
HOH
93
6
HOH
HOH
592
A
HOH
94
6
HOH
HOH
593
A
HOH
95
6
HOH
HOH
594
A
HOH
96
6
HOH
HOH
595
A
HOH
97
6
HOH
HOH
596
A
HOH
98
6
HOH
HOH
597
A
HOH
99
6
HOH
HOH
598
A
HOH
100
6
HOH
HOH
599
A
HOH
101
6
HOH
HOH
600
A
HOH
102
6
HOH
HOH
601
A
HOH
103
6
HOH
HOH
602
A
HOH
104
6
HOH
HOH
603
A
HOH
105
6
HOH
HOH
604
A
HOH
106
6
HOH
HOH
605
A
HOH
107
6
HOH
HOH
606
A
HOH
108
6
HOH
HOH
607
A
HOH
109
6
HOH
HOH
608
A
HOH
110
6
HOH
HOH
609
A
HOH
111
6
HOH
HOH
610
A
HOH
112
6
HOH
HOH
611
A
HOH
113
6
HOH
HOH
612
A
HOH
114
6
HOH
HOH
613
A
HOH
115
6
HOH
HOH
614
A
HOH
116
6
HOH
HOH
615
A
HOH
117
6
HOH
HOH
616
A
HOH
118
6
HOH
HOH
617
A
HOH
119
6
HOH
HOH
618
A
HOH
120
6
HOH
HOH
619
A
HOH
121
6
HOH
HOH
620
A
HOH
122
6
HOH
HOH
621
A
HOH
123
6
HOH
HOH
622
A
HOH
124
6
HOH
HOH
623
A
HOH
125
6
HOH
HOH
624
A
HOH
126
6
HOH
HOH
625
A
HOH
127
6
HOH
HOH
626
A
HOH
128
6
HOH
HOH
627
A
HOH
129
6
HOH
HOH
628
A
HOH
130
6
HOH
HOH
629
A
HOH
131
6
HOH
HOH
630
A
HOH
132
6
HOH
HOH
631
A
HOH
133
6
HOH
HOH
632
A
HOH
134
6
HOH
HOH
633
A
HOH
135
6
HOH
HOH
634
A
HOH
136
6
HOH
HOH
635
A
HOH
137
6
HOH
HOH
636
A
HOH
138
6
HOH
HOH
637
A
HOH
139
6
HOH
HOH
638
A
HOH
140
6
HOH
HOH
639
A
HOH
141
6
HOH
HOH
640
A
HOH
142
6
HOH
HOH
641
A
HOH
143
6
HOH
HOH
642
A
HOH
144
6
HOH
HOH
643
A
HOH
145
6
HOH
HOH
644
A
HOH
146
6
HOH
HOH
645
A
HOH
147
6
HOH
HOH
646
A
HOH
148
6
HOH
HOH
647
A
HOH
149
6
HOH
HOH
648
A
HOH
150
6
HOH
HOH
649
A
HOH
151
6
HOH
HOH
650
A
HOH
152
6
HOH
HOH
651
A
HOH
153
6
HOH
HOH
652
A
HOH
154
6
HOH
HOH
653
A
HOH
155
6
HOH
HOH
654
A
HOH
156
6
HOH
HOH
655
A
HOH
157
6
HOH
HOH
656
A
HOH
158
6
HOH
HOH
657
A
HOH
159
6
HOH
HOH
658
A
HOH
160
6
HOH
HOH
659
A
HOH
161
6
HOH
HOH
660
A
HOH
162
6
HOH
HOH
661
A
HOH
163
6
HOH
HOH
662
A
HOH
164
6
HOH
HOH
663
A
HOH
165
6
HOH
HOH
664
A
HOH
166
6
HOH
HOH
665
A
HOH
167
6
HOH
HOH
666
A
HOH
168
6
HOH
HOH
667
A
HOH
169
6
HOH
HOH
668
A
HOH
170
6
HOH
HOH
669
A
HOH
171
6
HOH
HOH
670
A
HOH
172
6
HOH
HOH
671
A
HOH
173
6
HOH
HOH
672
A
HOH
174
6
HOH
HOH
673
A
HOH
175
6
HOH
HOH
674
A
HOH
176
6
HOH
HOH
675
A
HOH
177
6
HOH
HOH
676
A
HOH
178
6
HOH
HOH
677
A
HOH
179
6
HOH
HOH
678
A
HOH
180
6
HOH
HOH
679
A
HOH
181
6
HOH
HOH
680
A
HOH
182
6
HOH
HOH
681
A
HOH
183
6
HOH
HOH
682
A
n
1
1
A
VAL
2
n
2
VAL
2
A
ASP
3
n
3
ASP
3
A
GLN
4
n
4
GLN
4
A
ALA
5
n
5
ALA
5
A
THR
6
n
6
THR
6
A
LEU
7
n
7
LEU
7
A
ASP
8
n
8
ASP
8
A
LYS
9
n
9
LYS
9
A
LEU
10
n
10
LEU
10
A
GLU
11
n
11
GLU
11
A
ALA
12
n
12
ALA
12
A
GLY
13
n
13
GLY
13
A
PHE
14
n
14
PHE
14
A
LYS
15
n
15
LYS
15
A
LYS
16
n
16
LYS
16
A
LEU
17
n
17
LEU
17
A
GLN
18
n
18
GLN
18
A
GLU
19
n
19
GLU
19
A
ALA
20
n
20
ALA
20
A
SER
21
n
21
SER
21
A
ASP
22
n
22
ASP
22
A
CYS
23
n
23
CYS
23
A
LYS
24
n
24
LYS
24
A
SER
25
n
25
SER
25
A
LEU
26
n
26
LEU
26
A
LEU
27
n
27
LEU
27
A
LYS
28
n
28
LYS
28
A
LYS
29
n
29
LYS
29
A
HIS
30
n
30
HIS
30
A
LEU
31
n
31
LEU
31
A
THR
32
n
32
THR
32
A
LYS
33
n
33
LYS
33
A
ASP
34
n
34
ASP
34
A
VAL
35
n
35
VAL
35
A
PHE
36
n
36
PHE
36
A
ASP
37
n
37
ASP
37
A
SER
38
n
38
SER
38
A
ILE
39
n
39
ILE
39
A
LYS
40
n
40
LYS
40
A
ASN
41
n
41
ASN
41
A
LYS
42
n
42
LYS
42
A
LYS
43
n
43
LYS
43
A
THR
44
n
44
THR
44
A
GLY
45
n
45
GLY
45
A
MET
46
n
46
MET
46
A
GLY
47
n
47
GLY
47
A
ALA
48
n
48
ALA
48
A
THR
49
n
49
THR
49
A
LEU
50
n
50
LEU
50
A
LEU
51
n
51
LEU
51
A
ASP
52
n
52
ASP
52
A
VAL
53
n
53
VAL
53
A
ILE
54
n
54
ILE
54
A
GLN
55
n
55
GLN
55
A
SER
56
n
56
SER
56
A
GLY
57
n
57
GLY
57
A
VAL
58
n
58
VAL
58
A
GLU
59
n
59
GLU
59
A
ASN
60
n
60
ASN
60
A
LEU
61
n
61
LEU
61
A
ASP
62
n
62
ASP
62
A
SER
63
n
63
SER
63
A
GLY
64
n
64
GLY
64
A
VAL
65
n
65
VAL
65
A
GLY
66
n
66
GLY
66
A
ILE
67
n
67
ILE
67
A
TYR
68
n
68
TYR
68
A
ALA
69
n
69
ALA
69
A
PRO
70
n
70
PRO
70
A
ASP
71
n
71
ASP
71
A
ALA
72
n
72
ALA
72
A
GLU
73
n
73
GLU
73
A
SER
74
n
74
SER
74
A
TYR
75
n
75
TYR
75
A
ARG
76
n
76
ARG
76
A
THR
77
n
77
THR
77
A
PHE
78
n
78
PHE
78
A
GLY
79
n
79
GLY
79
A
PRO
80
n
80
PRO
80
A
LEU
81
n
81
LEU
81
A
PHE
82
n
82
PHE
82
A
ASP
83
n
83
ASP
83
A
PRO
84
n
84
PRO
84
A
ILE
85
n
85
ILE
85
A
ILE
86
n
86
ILE
86
A
ASP
87
n
87
ASP
87
A
ASP
88
n
88
ASP
88
A
TYR
89
n
89
TYR
89
A
HIS
90
n
90
HIS
90
A
GLY
91
n
91
GLY
91
A
GLY
92
n
92
GLY
92
A
PHE
93
n
93
PHE
93
A
LYS
94
n
94
LYS
94
A
LEU
95
n
95
LEU
95
A
THR
96
n
96
THR
96
A
ASP
97
n
97
ASP
97
A
LYS
98
n
98
LYS
98
A
HIS
99
n
99
HIS
99
A
PRO
100
n
100
PRO
100
A
PRO
101
n
101
PRO
101
A
LYS
102
n
102
LYS
102
A
GLN
103
n
103
GLN
103
A
TRP
104
n
104
TRP
104
A
GLY
105
n
105
GLY
105
A
ASP
106
n
106
ASP
106
A
ILE
107
n
107
ILE
107
A
ASN
108
n
108
ASN
108
A
THR
109
n
109
THR
109
A
LEU
110
n
110
LEU
110
A
VAL
111
n
111
VAL
111
A
GLY
112
n
112
GLY
112
A
LEU
113
n
113
LEU
113
A
ASP
114
n
114
ASP
114
A
PRO
115
n
115
PRO
115
A
ALA
116
n
116
ALA
116
A
GLY
117
n
117
GLY
117
A
GLN
118
n
118
GLN
118
A
PHE
119
n
119
PHE
119
A
ILE
120
n
120
ILE
120
A
ILE
121
n
121
ILE
121
A
SER
122
n
122
SER
122
A
THR
123
n
123
THR
123
A
ARG
124
n
124
ARG
124
A
VAL
125
n
125
VAL
125
A
ARG
126
n
126
ARG
126
A
CYS
127
n
127
CYS
127
A
GLY
128
n
128
GLY
128
A
ARG
129
n
129
ARG
129
A
SER
130
n
130
SER
130
A
LEU
131
n
131
LEU
131
A
GLN
132
n
132
GLN
132
A
GLY
133
n
133
GLY
133
A
TYR
134
n
134
TYR
134
A
PRO
135
n
135
PRO
135
A
PHE
136
n
136
PHE
136
A
ASN
137
n
137
ASN
137
A
PRO
138
n
138
PRO
138
A
CYS
139
n
139
CYS
139
A
LEU
140
n
140
LEU
140
A
THR
141
n
141
THR
141
A
ALA
142
n
142
ALA
142
A
GLU
143
n
143
GLU
143
A
GLN
144
n
144
GLN
144
A
TYR
145
n
145
TYR
145
A
LYS
146
n
146
LYS
146
A
GLU
147
n
147
GLU
147
A
MET
148
n
148
MET
148
A
GLU
149
n
149
GLU
149
A
GLU
150
n
150
GLU
150
A
LYS
151
n
151
LYS
151
A
VAL
152
n
152
VAL
152
A
SER
153
n
153
SER
153
A
SER
154
n
154
SER
154
A
THR
155
n
155
THR
155
A
LEU
156
n
156
LEU
156
A
SER
157
n
157
SER
157
A
SER
158
n
158
SER
158
A
MET
159
n
159
MET
159
A
GLU
160
n
160
GLU
160
A
ASP
161
n
161
ASP
161
A
GLU
162
n
162
GLU
162
A
LEU
163
n
163
LEU
163
A
LYS
164
n
164
LYS
164
A
GLY
165
n
165
GLY
165
A
THR
166
n
166
THR
166
A
TYR
167
n
167
TYR
167
A
TYR
168
n
168
TYR
168
A
PRO
169
n
169
PRO
169
A
LEU
170
n
170
LEU
170
A
THR
171
n
171
THR
171
A
GLY
172
n
172
GLY
172
A
MET
173
n
173
MET
173
A
SER
174
n
174
SER
174
A
LYS
175
n
175
LYS
175
A
ALA
176
n
176
ALA
176
A
THR
177
n
177
THR
177
A
GLN
178
n
178
GLN
178
A
GLN
179
n
179
GLN
179
A
GLN
180
n
180
GLN
180
A
LEU
181
n
181
LEU
181
A
ILE
182
n
182
ILE
182
A
ASP
183
n
183
ASP
183
A
ASP
184
n
184
ASP
184
A
HIS
185
n
185
HIS
185
A
PHE
186
n
186
PHE
186
A
LEU
187
n
187
LEU
187
A
PHE
188
n
188
PHE
188
A
LYS
189
n
189
LYS
189
A
GLU
190
n
190
GLU
190
A
GLY
191
n
191
GLY
191
A
ASP
192
n
192
ASP
192
A
ARG
193
n
193
ARG
193
A
PHE
194
n
194
PHE
194
A
LEU
195
n
195
LEU
195
A
GLN
196
n
196
GLN
196
A
THR
197
n
197
THR
197
A
ALA
198
n
198
ALA
198
A
ASN
199
n
199
ASN
199
A
ALA
200
n
200
ALA
200
A
CYS
201
n
201
CYS
201
A
ARG
202
n
202
ARG
202
A
TYR
203
n
203
TYR
203
A
TRP
204
n
204
TRP
204
A
PRO
205
n
205
PRO
205
A
THR
206
n
206
THR
206
A
GLY
207
n
207
GLY
207
A
ARG
208
n
208
ARG
208
A
GLY
209
n
209
GLY
209
A
ILE
210
n
210
ILE
210
A
PHE
211
n
211
PHE
211
A
HIS
212
n
212
HIS
212
A
ASN
213
n
213
ASN
213
A
ASP
214
n
214
ASP
214
A
ALA
215
n
215
ALA
215
A
LYS
216
n
216
LYS
216
A
THR
217
n
217
THR
217
A
PHE
218
n
218
PHE
218
A
LEU
219
n
219
LEU
219
A
VAL
220
n
220
VAL
220
A
TRP
221
n
221
TRP
221
A
VAL
222
n
222
VAL
222
A
ASN
223
n
223
ASN
223
A
GLU
224
n
224
GLU
224
A
GLU
225
n
225
GLU
225
A
ASP
226
n
226
ASP
226
A
HIS
227
n
227
HIS
227
A
LEU
228
n
228
LEU
228
A
ARG
229
n
229
ARG
229
A
ILE
230
n
230
ILE
230
A
ILE
231
n
231
ILE
231
A
SER
232
n
232
SER
232
A
MET
233
n
233
MET
233
A
GLN
234
n
234
GLN
234
A
LYS
235
n
235
LYS
235
A
GLY
236
n
236
GLY
236
A
GLY
237
n
237
GLY
237
A
ASP
238
n
238
ASP
238
A
LEU
239
n
239
LEU
239
A
LYS
240
n
240
LYS
240
A
THR
241
n
241
THR
241
A
VAL
242
n
242
VAL
242
A
TYR
243
n
243
TYR
243
A
LYS
244
n
244
LYS
244
A
ARG
245
n
245
ARG
245
A
LEU
246
n
246
LEU
246
A
VAL
247
n
247
VAL
247
A
THR
248
n
248
THR
248
A
ALA
249
n
249
ALA
249
A
VAL
250
n
250
VAL
250
A
ASP
251
n
251
ASP
251
A
ASN
252
n
252
ASN
252
A
ILE
253
n
253
ILE
253
A
GLU
254
n
254
GLU
254
A
SER
255
n
255
SER
255
A
LYS
256
n
256
LYS
256
A
LEU
257
n
257
LEU
257
A
PRO
258
n
258
PRO
258
A
PHE
259
n
259
PHE
259
A
SER
260
n
260
SER
260
A
HIS
261
n
261
HIS
261
A
ASP
262
n
262
ASP
262
A
ASP
263
n
263
ASP
263
A
ARG
264
n
264
ARG
264
A
PHE
265
n
265
PHE
265
A
GLY
266
n
266
GLY
266
A
PHE
267
n
267
PHE
267
A
LEU
268
n
268
LEU
268
A
THR
269
n
269
THR
269
A
PHE
270
n
270
PHE
270
A
CYS
271
n
271
CYS
271
A
PRO
272
n
272
PRO
272
A
THR
273
n
273
THR
273
A
ASN
274
n
274
ASN
274
A
LEU
275
n
275
LEU
275
A
GLY
276
n
276
GLY
276
A
THR
277
n
277
THR
277
A
THR
278
n
278
THR
278
A
MET
279
n
279
MET
279
A
ARG
280
n
280
ARG
280
A
ALA
281
n
281
ALA
281
A
SER
282
n
282
SER
282
A
VAL
283
n
283
VAL
283
A
HIS
284
n
284
HIS
284
A
ILE
285
n
285
ILE
285
A
GLN
286
n
286
GLN
286
A
LEU
287
n
287
LEU
287
A
PRO
288
n
288
PRO
288
A
LYS
289
n
289
LYS
289
A
LEU
290
n
290
LEU
290
A
ALA
291
n
291
ALA
291
A
LYS
292
n
292
LYS
292
A
ASP
293
n
293
ASP
293
A
ARG
294
n
294
ARG
294
A
LYS
295
n
295
LYS
295
A
VAL
296
n
296
VAL
296
A
LEU
297
n
297
LEU
297
A
GLU
298
n
298
GLU
298
A
ASP
299
n
299
ASP
299
A
ILE
300
n
300
ILE
300
A
ALA
301
n
301
ALA
301
A
SER
302
n
302
SER
302
A
LYS
303
n
303
LYS
303
A
PHE
304
n
304
PHE
304
A
ASN
305
n
305
ASN
305
A
LEU
306
n
306
LEU
306
A
GLN
307
n
307
GLN
307
A
VAL
308
n
308
VAL
308
A
ARG
309
n
309
ARG
309
A
GLY
310
n
310
GLY
310
A
THR
311
n
311
THR
311
A
ARG
312
n
312
ARG
312
A
GLY
313
n
313
GLY
313
A
GLU
314
n
314
GLU
314
A
HIS
315
n
315
HIS
315
A
THR
316
n
316
THR
316
A
GLU
317
n
317
GLU
317
A
SER
318
n
318
SER
318
A
GLU
319
n
319
GLU
319
A
GLY
320
n
320
GLY
320
A
GLY
321
n
321
GLY
321
A
VAL
322
n
322
VAL
322
A
TYR
323
n
323
TYR
323
A
ASP
324
n
324
ASP
324
A
ILE
325
n
325
ILE
325
A
SER
326
n
326
SER
326
A
ASN
327
n
327
ASN
327
A
LYS
328
n
328
LYS
328
A
ARG
329
n
329
ARG
329
A
ARG
330
n
330
ARG
330
A
LEU
331
n
331
LEU
331
A
GLY
332
n
332
GLY
332
A
LEU
333
n
333
LEU
333
A
THR
334
n
334
THR
334
A
GLU
335
n
335
GLU
335
A
TYR
336
n
336
TYR
336
A
GLN
337
n
337
GLN
337
A
ALA
338
n
338
ALA
338
A
VAL
339
n
339
VAL
339
A
ARG
340
n
340
ARG
340
A
GLU
341
n
341
GLU
341
A
MET
342
n
342
MET
342
A
GLN
343
n
343
GLN
343
A
ASP
344
n
344
ASP
344
A
GLY
345
n
345
GLY
345
A
ILE
346
n
346
ILE
346
A
LEU
347
n
347
LEU
347
A
GLU
348
n
348
GLU
348
A
MET
349
n
349
MET
349
A
ILE
350
n
350
ILE
350
A
LYS
351
n
351
LYS
351
A
MET
352
n
352
MET
352
A
GLU
353
n
353
GLU
353
A
LYS
354
n
354
LYS
354
A
ALA
355
n
355
ALA
355
A
ALA
356
n
356
ALA
356
A
ALA
357
n
357
ALA
357
A
1.6602
-0.5028
0.3769
2.2831
-0.0684
2.3606
0.0080
-0.1910
0.4622
0.0734
-0.0159
0.6421
-0.8152
-0.9373
-0.0442
0.2411
0.1475
0.0073
0.1462
-0.0640
0.2522
refined
-3.6897
4.1368
-0.5216
X-RAY DIFFRACTION
1.1678
0.4908
0.2491
1.4187
-0.3076
1.2274
0.1106
0.5293
0.0499
-0.2898
0.0264
-0.0140
-0.0469
0.1226
0.0180
0.2038
0.0203
-0.0203
0.1802
-0.0188
0.1079
refined
8.6224
-7.2677
-17.0193
X-RAY DIFFRACTION
0.1320
0.1043
0.1870
0.3200
0.3291
0.4033
0.5239
0.2441
-0.5067
-0.3038
-0.1483
0.1011
0.6682
-0.0555
0.1872
0.3990
0.0831
-0.1636
0.1198
-0.1453
0.2545
refined
9.1960
-23.5182
-9.1281
X-RAY DIFFRACTION
1.5402
0.0463
0.2331
1.2996
-0.4960
1.5974
0.1443
0.1203
-0.1383
0.1883
-0.4042
-0.2575
-0.1693
0.6027
-0.1070
0.0753
-0.0584
-0.0277
0.0951
0.0017
0.0903
refined
21.1317
-8.6606
1.5439
X-RAY DIFFRACTION
0.8366
-0.3839
0.5306
1.0672
0.0075
0.5219
0.0778
-0.4395
0.0723
0.6585
-0.0383
0.5064
-0.1113
-0.1684
0.0115
0.2117
-0.0541
0.0427
0.1883
-0.0013
0.2137
refined
9.6207
-10.5917
12.8332
X-RAY DIFFRACTION
A
2
A
102
X-RAY DIFFRACTION
1
( CHAIN A AND ( RESID 2:102 OR RESID 193:201 OR RESID 269:276 ) )
A
193
A
201
X-RAY DIFFRACTION
1
( CHAIN A AND ( RESID 2:102 OR RESID 193:201 OR RESID 269:276 ) )
A
269
A
276
X-RAY DIFFRACTION
1
( CHAIN A AND ( RESID 2:102 OR RESID 193:201 OR RESID 269:276 ) )
A
129
A
155
X-RAY DIFFRACTION
2
( CHAIN A AND ( RESID 129:155 OR RESID 167:173 OR RESID 202:213 OR RESID 221:229 OR RESID 258:259 ) )
A
167
A
173
X-RAY DIFFRACTION
2
( CHAIN A AND ( RESID 129:155 OR RESID 167:173 OR RESID 202:213 OR RESID 221:229 OR RESID 258:259 ) )
A
202
A
213
X-RAY DIFFRACTION
2
( CHAIN A AND ( RESID 129:155 OR RESID 167:173 OR RESID 202:213 OR RESID 221:229 OR RESID 258:259 ) )
A
221
A
229
X-RAY DIFFRACTION
2
( CHAIN A AND ( RESID 129:155 OR RESID 167:173 OR RESID 202:213 OR RESID 221:229 OR RESID 258:259 ) )
A
258
A
259
X-RAY DIFFRACTION
2
( CHAIN A AND ( RESID 129:155 OR RESID 167:173 OR RESID 202:213 OR RESID 221:229 OR RESID 258:259 ) )
A
174
A
187
X-RAY DIFFRACTION
3
( CHAIN A AND RESID 174:187 )
A
103
A
128
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
156
A
166
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
216
A
220
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
233
A
257
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
260
A
268
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
277
A
290
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
330
A
357
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
293
A
310
X-RAY DIFFRACTION
5
( CHAIN A AND ( RESID 293:310 OR RESID 321:329 ) )
A
321
A
329
X-RAY DIFFRACTION
5
( CHAIN A AND ( RESID 293:310 OR RESID 321:329 ) )
author_and_software_defined_assembly
PISA
1
monomeric
A
ADP
401
B
O1B
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
ADP
401
B
O1A
ADP
1_555
77.4
A
ADP
401
B
O1B
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
NO3
404
E
O1
NO3
1_555
63.6
A
ADP
401
B
O1A
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
NO3
404
E
O1
NO3
1_555
80.5
A
ADP
401
B
O1B
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
504
F
O
HOH
1_555
87.1
A
ADP
401
B
O1A
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
504
F
O
HOH
1_555
160.7
A
NO3
404
E
O1
NO3
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
504
F
O
HOH
1_555
102.9
A
ADP
401
B
O1B
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
507
F
O
HOH
1_555
86.7
A
ADP
401
B
O1A
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
507
F
O
HOH
1_555
72.5
A
NO3
404
E
O1
NO3
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
507
F
O
HOH
1_555
143.7
A
HOH
504
F
O
HOH
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
507
F
O
HOH
1_555
95.5
A
ADP
401
B
O1B
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
618
F
O
HOH
1_555
155.7
A
ADP
401
B
O1A
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
618
F
O
HOH
1_555
90.0
A
NO3
404
E
O1
NO3
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
618
F
O
HOH
1_555
94.2
A
HOH
504
F
O
HOH
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
618
F
O
HOH
1_555
108.5
A
HOH
507
F
O
HOH
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
618
F
O
HOH
1_555
109.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
168
A
N
TYR
168
A
O
ILE
210
A
O
ILE
210
A
N
GLY
209
A
N
GLY
209
A
O
VAL
222
A
O
VAL
222
A
N
LEU
219
A
N
LEU
219
A
O
ILE
231
A
O
ILE
231
A
O
SER
232
A
O
SER
232
A
N
VAL
125
A
N
VAL
125
A
N
ILE
121
A
N
ILE
121
A
O
HIS
284
A
O
HIS
284
A
N
ILE
285
A
N
ILE
285
A
O
TYR
323
A
O
TYR
323
A
O
ASP
324
A
O
ASP
324
A
N
ARG
309
A
N
ARG
309
A
N
ASP
262
A
N
ASP
262
A
O
GLY
266
A
O
GLY
266
1
A
MET
1
A
MET
1
1
Y
1
A
A
O
O
HOH
HOH
622
630
2.11
1_555
4_545
1
A
ASP
3
-59.42
172.08
1
A
ASP
114
-160.53
74.95
1
A
ASP
161
58.58
-130.56
1
A
GLU
224
-85.82
-120.26
1
A
LYS
292
-55.30
-7.14
-6.3940
0.0000
-0.0000
13.7961
-0.0000
-7.4022
0.2100
0.1782
0.1792
2.448
32.485
406
13808
13808
2.94
97.17
0.27
Used same test set as PDB entry 1M15
1
1.00
MOLECULAR REPLACEMENT
19.67
0.95
1.20
PDB ENTRY 1M15
ML
FLAT BULK SOLVENT MODEL
28.014
0.347
2.448
32.485
182
3043
44
0
2817
0.007
2964
0.833
4003
14.562
1122
0.058
438
0.004
511
2.448
32.485
4GW0
13808
13808
1.0
1.0
1
97.17
data collection
CrystalClear
model building
PHENIX
(phenix.refine: 1.7_650)
refinement
PHENIX
(phenix.refine: 1.7_650)
data reduction
DENZO
data scaling
SCALEPACK
phasing
PHENIX
1.7_650
Crystal structure of arginine kinase in complex with imino-L-ornithine, MgADP, and nitrate.
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
ASP
3
A
ASP
3
HELX_P
A
ALA
20
A
ALA
20
1
1
18
A
SER
25
A
SER
25
HELX_P
A
LEU
31
A
LEU
31
1
2
7
A
THR
32
A
THR
32
HELX_P
A
LYS
40
A
LYS
40
1
3
9
A
THR
49
A
THR
49
HELX_P
A
ASN
60
A
ASN
60
1
4
12
A
GLU
73
A
GLU
73
HELX_P
A
PHE
78
A
PHE
78
1
5
6
A
PHE
78
A
PHE
78
HELX_P
A
HIS
90
A
HIS
90
1
6
13
A
ASP
106
A
ASP
106
HELX_P
A
LEU
110
A
LEU
110
5
7
5
A
PHE
136
A
PHE
136
HELX_P
A
LEU
140
A
LEU
140
5
8
5
A
THR
141
A
THR
141
HELX_P
A
SER
157
A
SER
157
1
9
17
A
SER
158
A
SER
158
HELX_P
A
MET
159
A
MET
159
5
10
2
A
GLU
160
A
GLU
160
HELX_P
A
LYS
164
A
LYS
164
5
11
5
A
SER
174
A
SER
174
HELX_P
A
ASP
184
A
ASP
184
1
12
11
A
ASP
192
A
ASP
192
HELX_P
A
ALA
198
A
ALA
198
1
13
7
A
ASP
238
A
ASP
238
HELX_P
A
SER
255
A
SER
255
1
14
18
A
CYS
271
A
CYS
271
HELX_P
A
LEU
275
A
LEU
275
5
15
5
A
ASP
293
A
ASP
293
HELX_P
A
LYS
303
A
LYS
303
1
16
11
A
THR
334
A
THR
334
HELX_P
A
ALA
356
A
ALA
356
1
17
23
metalc
2.276
A
ADP
401
B
O1B
ADP
1_555
A
MG
402
C
MG
MG
1_555
metalc
2.356
A
ADP
401
B
O1A
ADP
1_555
A
MG
402
C
MG
MG
1_555
metalc
2.199
A
MG
402
C
MG
MG
1_555
A
NO3
404
E
O1
NO3
1_555
metalc
2.086
A
MG
402
C
MG
MG
1_555
A
HOH
504
F
O
HOH
1_555
metalc
2.072
A
MG
402
C
MG
MG
1_555
A
HOH
507
F
O
HOH
1_555
metalc
2.063
A
MG
402
C
MG
MG
1_555
A
HOH
618
F
O
HOH
1_555
TRANSFERASE
Arginine kinase, Phosphagen kinase, Transferase, Transition state analog, Kinase
A
TRP
204
A
TRP
204
1
A
PRO
205
A
PRO
205
3.63
KARG_LIMPO
UNP
1
1
P51541
MVDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGP
LFDPIIDDYHGGFKLTDKHPPKEWGDINTLVDLDPGGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSME
DELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLK
TVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEG
GVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
1
357
4GW0
1
357
P51541
A
1
1
357
1
GLU
engineered mutation
GLN
103
4GW0
A
P51541
UNP
103
103
1
ASP
engineered mutation
GLY
112
4GW0
A
P51541
UNP
112
112
1
GLY
engineered mutation
ALA
116
4GW0
A
P51541
UNP
116
116
8
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
166
A
THR
166
A
PRO
169
A
PRO
169
A
GLY
209
A
GLY
209
A
HIS
212
A
HIS
212
A
PHE
218
A
PHE
218
A
VAL
222
A
VAL
222
A
LEU
228
A
LEU
228
A
LYS
235
A
LYS
235
A
ILE
120
A
ILE
120
A
ARG
129
A
ARG
129
A
ARG
280
A
ARG
280
A
GLN
286
A
GLN
286
A
VAL
322
A
VAL
322
A
ASN
327
A
ASN
327
A
LEU
306
A
LEU
306
A
ARG
309
A
ARG
309
A
HIS
261
A
HIS
261
A
ASP
262
A
ASP
262
A
GLY
266
A
GLY
266
A
PHE
267
A
PHE
267
BINDING SITE FOR RESIDUE ADP A 401
A
ADP
401
Software
24
BINDING SITE FOR RESIDUE MG A 402
A
MG
402
Software
5
BINDING SITE FOR RESIDUE ILO A 403
A
ILO
403
Software
14
BINDING SITE FOR RESIDUE NO3 A 404
A
NO3
404
Software
9
A
SER
122
A
SER
122
24
1_555
A
ARG
124
A
ARG
124
24
1_555
A
ARG
126
A
ARG
126
24
1_555
A
HIS
185
A
HIS
185
24
1_555
A
TRP
221
A
TRP
221
24
1_555
A
ARG
229
A
ARG
229
24
1_555
A
ARG
280
A
ARG
280
24
1_555
A
SER
282
A
SER
282
24
1_555
A
VAL
283
A
VAL
283
24
1_555
A
HIS
284
A
HIS
284
24
1_555
A
ARG
309
A
ARG
309
24
1_555
A
THR
311
A
THR
311
24
1_555
A
ARG
312
A
ARG
312
24
1_555
A
GLY
313
A
GLY
313
24
1_555
A
GLU
314
A
GLU
314
24
1_555
A
ASP
324
A
ASP
324
24
1_555
A
MG
402
C
MG
24
1_555
A
NO3
404
E
NO3
24
1_555
A
HOH
504
F
HOH
24
1_555
A
HOH
506
F
HOH
24
1_555
A
HOH
507
F
HOH
24
1_555
A
HOH
526
F
HOH
24
1_555
A
HOH
528
F
HOH
24
1_555
A
HOH
556
F
HOH
24
1_555
A
ADP
401
B
ADP
5
1_555
A
NO3
404
E
NO3
5
1_555
A
HOH
504
F
HOH
5
1_555
A
HOH
507
F
HOH
5
1_555
A
HOH
618
F
HOH
5
1_555
A
SER
63
A
SER
63
14
1_555
A
GLY
64
A
GLY
64
14
1_555
A
VAL
65
A
VAL
65
14
1_555
A
GLY
66
A
GLY
66
14
1_555
A
TYR
68
A
TYR
68
14
1_555
A
GLU
225
A
GLU
225
14
1_555
A
CYS
271
A
CYS
271
14
1_555
A
THR
273
A
THR
273
14
1_555
A
GLU
314
A
GLU
314
14
1_555
A
HIS
315
A
HIS
315
14
1_555
A
NO3
404
E
NO3
14
1_555
A
HOH
529
F
HOH
14
1_555
A
HOH
536
F
HOH
14
1_555
A
HOH
646
F
HOH
14
1_555
A
ARG
126
A
ARG
126
9
1_555
A
GLU
225
A
GLU
225
9
1_555
A
ARG
229
A
ARG
229
9
1_555
A
ASN
274
A
ASN
274
9
1_555
A
ARG
309
A
ARG
309
9
1_555
A
ADP
401
B
ADP
9
1_555
A
MG
402
C
MG
9
1_555
A
ILO
403
D
ILO
9
1_555
A
HOH
504
F
HOH
9
1_555
19
P 21 21 21