0.015292
0.000000
0.000000
0.000000
0.014222
0.000000
0.000000
0.000000
0.012450
0.00000
0.00000
0.00000
Clark, S.A.
Davulcu, O.
Chapman, M.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
65.393
70.312
80.319
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
N O3 -1
62.005
NITRATE ION
non-polymer
C5 H12 N2 O2
132.161
n
L-ornithine
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
R
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
S
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
N
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
Y
184
N
C
Y
185
N
N
Y
186
N
C
Y
187
N
C
Y
188
N
N
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
S
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
N
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
C
N
278
N
S
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
MG
N
293
N
N
N
294
N
O
N
295
N
O
N
296
N
O
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
N
N
303
N
C
N
304
N
O
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
C
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
O
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
R
C
N
377
N
O
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
N
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
N
403
N
O
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
N
427
N
O
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
N
445
N
C
N
446
N
C
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
doub
N
39
N
sing
N
40
N
sing
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
Y
184
N
sing
Y
185
N
doub
Y
186
N
doub
N
187
N
sing
Y
188
N
sing
N
189
N
sing
Y
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
doub
Y
389
N
sing
Y
390
N
sing
N
391
N
sing
Y
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
Y
412
N
doub
Y
413
N
sing
Y
414
N
sing
N
415
N
sing
Y
416
N
doub
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
427
212
217
10.1016/j.bbrc.2012.09.053
22995310
Crystal structures of arginine kinase in complex with ADP, nitrate, and various phosphagen analogs.
2012
10.2210/pdb4gw2/pdb
pdb_00004gw2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2002-09-13
MAR CCD 165 mm
SINGLE WAVELENGTH
M
x-ray
1
1.541
1.0
1.541
ROTATING ANODE
RIGAKU RUH2R
40249.758
Arginine kinase
2.7.3.3
E103N, D112G, G116A
1
man
polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
132.161
L-ornithine
1
syn
non-polymer
62.005
NITRATE ION
1
syn
non-polymer
18.015
water
239
nat
water
AK
no
no
MVDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGP
LFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSME
DELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLK
TVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEG
GVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
MVDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGP
LFDPIIDDYHGGFKLTDKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSME
DELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLK
TVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEG
GVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Atlantic horseshoe crab
sample
6850
Limulus polyphemus
562
Escherichia coli
PLASMID
PET22B
1
2.29
46.38
VAPOR DIFFUSION, HANGING DROP
8.0
Protein at 30 mg/ml, 26% PEG 6000, 0.05M HEPES, 0.1M Magnesium chloride, 0.02M Potassium ADP, 0.25M Sodium nitrate,
0.025M Sodium azide, 0.005M DTT, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 398.0K
298.0
exptl_crystal_grow
exptl_crystal_grow
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Experimental preparation
Experimental preparation
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-10-03
1
1
2012-10-31
1
2
2018-01-31
1
3
2018-02-28
1
4
2023-09-13
_exptl_crystal_grow.pdbx_details
_exptl_crystal_grow.temp
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Same protein in an unliganded form.
Same protein bound to L-arginine, MgADP, and nitrate.
Same protein bound to L-citrulline and MgADP.
Same protein bound to D-arginine, MgADP, and nitrate.
Same protein bound to imino-L-ornithine, MgADP, and nitrate.
RCSB
Y
RCSB
2012-08-31
REL
REL
ADP
ADENOSINE-5'-DIPHOSPHATE
MG
MAGNESIUM ION
ORN
L-ornithine
NO3
NITRATE ION
HOH
water
1M15
PDB ENTRY 1M15
PDB
experimental model
ADP
400
2
ADP
ADP
401
A
MG
408
3
MG
MG
402
A
ORN
403
4
ORN
ORN
403
A
NO3
405
5
NO3
NO3
404
A
HOH
1
6
HOH
HOH
501
A
HOH
2
6
HOH
HOH
502
A
HOH
3
6
HOH
HOH
503
A
HOH
4
6
HOH
HOH
504
A
HOH
5
6
HOH
HOH
505
A
HOH
6
6
HOH
HOH
506
A
HOH
7
6
HOH
HOH
507
A
HOH
8
6
HOH
HOH
508
A
HOH
9
6
HOH
HOH
509
A
HOH
10
6
HOH
HOH
510
A
HOH
11
6
HOH
HOH
511
A
HOH
12
6
HOH
HOH
512
A
HOH
13
6
HOH
HOH
513
A
HOH
14
6
HOH
HOH
514
A
HOH
15
6
HOH
HOH
515
A
HOH
16
6
HOH
HOH
516
A
HOH
17
6
HOH
HOH
517
A
HOH
18
6
HOH
HOH
518
A
HOH
19
6
HOH
HOH
519
A
HOH
20
6
HOH
HOH
520
A
HOH
21
6
HOH
HOH
521
A
HOH
22
6
HOH
HOH
522
A
HOH
23
6
HOH
HOH
523
A
HOH
24
6
HOH
HOH
524
A
HOH
25
6
HOH
HOH
525
A
HOH
26
6
HOH
HOH
526
A
HOH
27
6
HOH
HOH
527
A
HOH
28
6
HOH
HOH
528
A
HOH
29
6
HOH
HOH
529
A
HOH
30
6
HOH
HOH
530
A
HOH
31
6
HOH
HOH
531
A
HOH
32
6
HOH
HOH
532
A
HOH
33
6
HOH
HOH
533
A
HOH
34
6
HOH
HOH
534
A
HOH
35
6
HOH
HOH
535
A
HOH
36
6
HOH
HOH
536
A
HOH
37
6
HOH
HOH
537
A
HOH
38
6
HOH
HOH
538
A
HOH
39
6
HOH
HOH
539
A
HOH
40
6
HOH
HOH
540
A
HOH
41
6
HOH
HOH
541
A
HOH
42
6
HOH
HOH
542
A
HOH
43
6
HOH
HOH
543
A
HOH
44
6
HOH
HOH
544
A
HOH
45
6
HOH
HOH
545
A
HOH
46
6
HOH
HOH
546
A
HOH
47
6
HOH
HOH
547
A
HOH
48
6
HOH
HOH
548
A
HOH
49
6
HOH
HOH
549
A
HOH
50
6
HOH
HOH
550
A
HOH
51
6
HOH
HOH
551
A
HOH
52
6
HOH
HOH
552
A
HOH
53
6
HOH
HOH
553
A
HOH
54
6
HOH
HOH
554
A
HOH
55
6
HOH
HOH
555
A
HOH
56
6
HOH
HOH
556
A
HOH
57
6
HOH
HOH
557
A
HOH
58
6
HOH
HOH
558
A
HOH
59
6
HOH
HOH
559
A
HOH
60
6
HOH
HOH
560
A
HOH
61
6
HOH
HOH
561
A
HOH
62
6
HOH
HOH
562
A
HOH
63
6
HOH
HOH
563
A
HOH
64
6
HOH
HOH
564
A
HOH
65
6
HOH
HOH
565
A
HOH
66
6
HOH
HOH
566
A
HOH
67
6
HOH
HOH
567
A
HOH
68
6
HOH
HOH
568
A
HOH
69
6
HOH
HOH
569
A
HOH
70
6
HOH
HOH
570
A
HOH
71
6
HOH
HOH
571
A
HOH
72
6
HOH
HOH
572
A
HOH
73
6
HOH
HOH
573
A
HOH
74
6
HOH
HOH
574
A
HOH
75
6
HOH
HOH
575
A
HOH
76
6
HOH
HOH
576
A
HOH
77
6
HOH
HOH
577
A
HOH
79
6
HOH
HOH
578
A
HOH
80
6
HOH
HOH
579
A
HOH
81
6
HOH
HOH
580
A
HOH
82
6
HOH
HOH
581
A
HOH
83
6
HOH
HOH
582
A
HOH
84
6
HOH
HOH
583
A
HOH
85
6
HOH
HOH
584
A
HOH
87
6
HOH
HOH
585
A
HOH
88
6
HOH
HOH
586
A
HOH
89
6
HOH
HOH
587
A
HOH
90
6
HOH
HOH
588
A
HOH
91
6
HOH
HOH
589
A
HOH
92
6
HOH
HOH
590
A
HOH
93
6
HOH
HOH
591
A
HOH
94
6
HOH
HOH
592
A
HOH
95
6
HOH
HOH
593
A
HOH
96
6
HOH
HOH
594
A
HOH
97
6
HOH
HOH
595
A
HOH
98
6
HOH
HOH
596
A
HOH
99
6
HOH
HOH
597
A
HOH
100
6
HOH
HOH
598
A
HOH
101
6
HOH
HOH
599
A
HOH
102
6
HOH
HOH
600
A
HOH
103
6
HOH
HOH
601
A
HOH
104
6
HOH
HOH
602
A
HOH
105
6
HOH
HOH
603
A
HOH
106
6
HOH
HOH
604
A
HOH
107
6
HOH
HOH
605
A
HOH
108
6
HOH
HOH
606
A
HOH
109
6
HOH
HOH
607
A
HOH
110
6
HOH
HOH
608
A
HOH
111
6
HOH
HOH
609
A
HOH
112
6
HOH
HOH
610
A
HOH
113
6
HOH
HOH
611
A
HOH
114
6
HOH
HOH
612
A
HOH
115
6
HOH
HOH
613
A
HOH
116
6
HOH
HOH
614
A
HOH
117
6
HOH
HOH
615
A
HOH
118
6
HOH
HOH
616
A
HOH
119
6
HOH
HOH
617
A
HOH
120
6
HOH
HOH
618
A
HOH
121
6
HOH
HOH
619
A
HOH
122
6
HOH
HOH
620
A
HOH
123
6
HOH
HOH
621
A
HOH
124
6
HOH
HOH
622
A
HOH
125
6
HOH
HOH
623
A
HOH
126
6
HOH
HOH
624
A
HOH
127
6
HOH
HOH
625
A
HOH
128
6
HOH
HOH
626
A
HOH
129
6
HOH
HOH
627
A
HOH
130
6
HOH
HOH
628
A
HOH
131
6
HOH
HOH
629
A
HOH
132
6
HOH
HOH
630
A
HOH
133
6
HOH
HOH
631
A
HOH
134
6
HOH
HOH
632
A
HOH
135
6
HOH
HOH
633
A
HOH
136
6
HOH
HOH
634
A
HOH
137
6
HOH
HOH
635
A
HOH
138
6
HOH
HOH
636
A
HOH
139
6
HOH
HOH
637
A
HOH
140
6
HOH
HOH
638
A
HOH
141
6
HOH
HOH
639
A
HOH
142
6
HOH
HOH
640
A
HOH
143
6
HOH
HOH
641
A
HOH
144
6
HOH
HOH
642
A
HOH
145
6
HOH
HOH
643
A
HOH
146
6
HOH
HOH
644
A
HOH
147
6
HOH
HOH
645
A
HOH
148
6
HOH
HOH
646
A
HOH
149
6
HOH
HOH
647
A
HOH
150
6
HOH
HOH
648
A
HOH
151
6
HOH
HOH
649
A
HOH
152
6
HOH
HOH
650
A
HOH
153
6
HOH
HOH
651
A
HOH
154
6
HOH
HOH
652
A
HOH
155
6
HOH
HOH
653
A
HOH
156
6
HOH
HOH
654
A
HOH
157
6
HOH
HOH
655
A
HOH
158
6
HOH
HOH
656
A
HOH
159
6
HOH
HOH
657
A
HOH
160
6
HOH
HOH
658
A
HOH
161
6
HOH
HOH
659
A
HOH
162
6
HOH
HOH
660
A
HOH
163
6
HOH
HOH
661
A
HOH
164
6
HOH
HOH
662
A
HOH
165
6
HOH
HOH
663
A
HOH
166
6
HOH
HOH
664
A
HOH
167
6
HOH
HOH
665
A
HOH
168
6
HOH
HOH
666
A
HOH
169
6
HOH
HOH
667
A
HOH
170
6
HOH
HOH
668
A
HOH
171
6
HOH
HOH
669
A
HOH
172
6
HOH
HOH
670
A
HOH
173
6
HOH
HOH
671
A
HOH
174
6
HOH
HOH
672
A
HOH
175
6
HOH
HOH
673
A
HOH
176
6
HOH
HOH
674
A
HOH
177
6
HOH
HOH
675
A
HOH
178
6
HOH
HOH
676
A
HOH
179
6
HOH
HOH
677
A
HOH
180
6
HOH
HOH
678
A
HOH
181
6
HOH
HOH
679
A
HOH
183
6
HOH
HOH
680
A
HOH
184
6
HOH
HOH
681
A
HOH
185
6
HOH
HOH
682
A
HOH
186
6
HOH
HOH
683
A
HOH
187
6
HOH
HOH
684
A
HOH
188
6
HOH
HOH
685
A
HOH
189
6
HOH
HOH
686
A
HOH
190
6
HOH
HOH
687
A
HOH
191
6
HOH
HOH
688
A
HOH
192
6
HOH
HOH
689
A
HOH
193
6
HOH
HOH
690
A
HOH
194
6
HOH
HOH
691
A
HOH
195
6
HOH
HOH
692
A
HOH
196
6
HOH
HOH
693
A
HOH
197
6
HOH
HOH
694
A
HOH
198
6
HOH
HOH
695
A
HOH
199
6
HOH
HOH
696
A
HOH
200
6
HOH
HOH
697
A
HOH
201
6
HOH
HOH
698
A
HOH
202
6
HOH
HOH
699
A
HOH
203
6
HOH
HOH
700
A
HOH
204
6
HOH
HOH
701
A
HOH
205
6
HOH
HOH
702
A
HOH
206
6
HOH
HOH
703
A
HOH
207
6
HOH
HOH
704
A
HOH
208
6
HOH
HOH
705
A
HOH
209
6
HOH
HOH
706
A
HOH
210
6
HOH
HOH
707
A
HOH
211
6
HOH
HOH
708
A
HOH
212
6
HOH
HOH
709
A
HOH
213
6
HOH
HOH
710
A
HOH
214
6
HOH
HOH
711
A
HOH
215
6
HOH
HOH
712
A
HOH
216
6
HOH
HOH
713
A
HOH
217
6
HOH
HOH
714
A
HOH
218
6
HOH
HOH
715
A
HOH
219
6
HOH
HOH
716
A
HOH
220
6
HOH
HOH
717
A
HOH
221
6
HOH
HOH
718
A
HOH
222
6
HOH
HOH
719
A
HOH
223
6
HOH
HOH
720
A
HOH
224
6
HOH
HOH
721
A
HOH
225
6
HOH
HOH
722
A
HOH
226
6
HOH
HOH
723
A
HOH
227
6
HOH
HOH
724
A
HOH
228
6
HOH
HOH
725
A
HOH
229
6
HOH
HOH
726
A
HOH
230
6
HOH
HOH
727
A
HOH
231
6
HOH
HOH
728
A
HOH
232
6
HOH
HOH
729
A
HOH
234
6
HOH
HOH
730
A
HOH
235
6
HOH
HOH
731
A
HOH
236
6
HOH
HOH
732
A
HOH
237
6
HOH
HOH
733
A
HOH
238
6
HOH
HOH
734
A
HOH
239
6
HOH
HOH
735
A
HOH
240
6
HOH
HOH
736
A
HOH
241
6
HOH
HOH
737
A
HOH
242
6
HOH
HOH
738
A
HOH
243
6
HOH
HOH
739
A
n
1
1
A
VAL
2
n
2
VAL
2
A
ASP
3
n
3
ASP
3
A
GLN
4
n
4
GLN
4
A
ALA
5
n
5
ALA
5
A
THR
6
n
6
THR
6
A
LEU
7
n
7
LEU
7
A
ASP
8
n
8
ASP
8
A
LYS
9
n
9
LYS
9
A
LEU
10
n
10
LEU
10
A
GLU
11
n
11
GLU
11
A
ALA
12
n
12
ALA
12
A
GLY
13
n
13
GLY
13
A
PHE
14
n
14
PHE
14
A
LYS
15
n
15
LYS
15
A
LYS
16
n
16
LYS
16
A
LEU
17
n
17
LEU
17
A
GLN
18
n
18
GLN
18
A
GLU
19
n
19
GLU
19
A
ALA
20
n
20
ALA
20
A
SER
21
n
21
SER
21
A
ASP
22
n
22
ASP
22
A
CYS
23
n
23
CYS
23
A
LYS
24
n
24
LYS
24
A
SER
25
n
25
SER
25
A
LEU
26
n
26
LEU
26
A
LEU
27
n
27
LEU
27
A
LYS
28
n
28
LYS
28
A
LYS
29
n
29
LYS
29
A
HIS
30
n
30
HIS
30
A
LEU
31
n
31
LEU
31
A
THR
32
n
32
THR
32
A
LYS
33
n
33
LYS
33
A
ASP
34
n
34
ASP
34
A
VAL
35
n
35
VAL
35
A
PHE
36
n
36
PHE
36
A
ASP
37
n
37
ASP
37
A
SER
38
n
38
SER
38
A
ILE
39
n
39
ILE
39
A
LYS
40
n
40
LYS
40
A
ASN
41
n
41
ASN
41
A
LYS
42
n
42
LYS
42
A
LYS
43
n
43
LYS
43
A
THR
44
n
44
THR
44
A
GLY
45
n
45
GLY
45
A
MET
46
n
46
MET
46
A
GLY
47
n
47
GLY
47
A
ALA
48
n
48
ALA
48
A
THR
49
n
49
THR
49
A
LEU
50
n
50
LEU
50
A
LEU
51
n
51
LEU
51
A
ASP
52
n
52
ASP
52
A
VAL
53
n
53
VAL
53
A
ILE
54
n
54
ILE
54
A
GLN
55
n
55
GLN
55
A
SER
56
n
56
SER
56
A
GLY
57
n
57
GLY
57
A
VAL
58
n
58
VAL
58
A
GLU
59
n
59
GLU
59
A
ASN
60
n
60
ASN
60
A
LEU
61
n
61
LEU
61
A
ASP
62
n
62
ASP
62
A
SER
63
n
63
SER
63
A
GLY
64
n
64
GLY
64
A
VAL
65
n
65
VAL
65
A
GLY
66
n
66
GLY
66
A
ILE
67
n
67
ILE
67
A
TYR
68
n
68
TYR
68
A
ALA
69
n
69
ALA
69
A
PRO
70
n
70
PRO
70
A
ASP
71
n
71
ASP
71
A
ALA
72
n
72
ALA
72
A
GLU
73
n
73
GLU
73
A
SER
74
n
74
SER
74
A
TYR
75
n
75
TYR
75
A
ARG
76
n
76
ARG
76
A
THR
77
n
77
THR
77
A
PHE
78
n
78
PHE
78
A
GLY
79
n
79
GLY
79
A
PRO
80
n
80
PRO
80
A
LEU
81
n
81
LEU
81
A
PHE
82
n
82
PHE
82
A
ASP
83
n
83
ASP
83
A
PRO
84
n
84
PRO
84
A
ILE
85
n
85
ILE
85
A
ILE
86
n
86
ILE
86
A
ASP
87
n
87
ASP
87
A
ASP
88
n
88
ASP
88
A
TYR
89
n
89
TYR
89
A
HIS
90
n
90
HIS
90
A
GLY
91
n
91
GLY
91
A
GLY
92
n
92
GLY
92
A
PHE
93
n
93
PHE
93
A
LYS
94
n
94
LYS
94
A
LEU
95
n
95
LEU
95
A
THR
96
n
96
THR
96
A
ASP
97
n
97
ASP
97
A
LYS
98
n
98
LYS
98
A
HIS
99
n
99
HIS
99
A
PRO
100
n
100
PRO
100
A
PRO
101
n
101
PRO
101
A
LYS
102
n
102
LYS
102
A
GLN
103
n
103
GLN
103
A
TRP
104
n
104
TRP
104
A
GLY
105
n
105
GLY
105
A
ASP
106
n
106
ASP
106
A
ILE
107
n
107
ILE
107
A
ASN
108
n
108
ASN
108
A
THR
109
n
109
THR
109
A
LEU
110
n
110
LEU
110
A
VAL
111
n
111
VAL
111
A
GLY
112
n
112
GLY
112
A
LEU
113
n
113
LEU
113
A
ASP
114
n
114
ASP
114
A
PRO
115
n
115
PRO
115
A
ALA
116
n
116
ALA
116
A
GLY
117
n
117
GLY
117
A
GLN
118
n
118
GLN
118
A
PHE
119
n
119
PHE
119
A
ILE
120
n
120
ILE
120
A
ILE
121
n
121
ILE
121
A
SER
122
n
122
SER
122
A
THR
123
n
123
THR
123
A
ARG
124
n
124
ARG
124
A
VAL
125
n
125
VAL
125
A
ARG
126
n
126
ARG
126
A
CYS
127
n
127
CYS
127
A
GLY
128
n
128
GLY
128
A
ARG
129
n
129
ARG
129
A
SER
130
n
130
SER
130
A
LEU
131
n
131
LEU
131
A
GLN
132
n
132
GLN
132
A
GLY
133
n
133
GLY
133
A
TYR
134
n
134
TYR
134
A
PRO
135
n
135
PRO
135
A
PHE
136
n
136
PHE
136
A
ASN
137
n
137
ASN
137
A
PRO
138
n
138
PRO
138
A
CYS
139
n
139
CYS
139
A
LEU
140
n
140
LEU
140
A
THR
141
n
141
THR
141
A
ALA
142
n
142
ALA
142
A
GLU
143
n
143
GLU
143
A
GLN
144
n
144
GLN
144
A
TYR
145
n
145
TYR
145
A
LYS
146
n
146
LYS
146
A
GLU
147
n
147
GLU
147
A
MET
148
n
148
MET
148
A
GLU
149
n
149
GLU
149
A
GLU
150
n
150
GLU
150
A
LYS
151
n
151
LYS
151
A
VAL
152
n
152
VAL
152
A
SER
153
n
153
SER
153
A
SER
154
n
154
SER
154
A
THR
155
n
155
THR
155
A
LEU
156
n
156
LEU
156
A
SER
157
n
157
SER
157
A
SER
158
n
158
SER
158
A
MET
159
n
159
MET
159
A
GLU
160
n
160
GLU
160
A
ASP
161
n
161
ASP
161
A
GLU
162
n
162
GLU
162
A
LEU
163
n
163
LEU
163
A
LYS
164
n
164
LYS
164
A
GLY
165
n
165
GLY
165
A
THR
166
n
166
THR
166
A
TYR
167
n
167
TYR
167
A
TYR
168
n
168
TYR
168
A
PRO
169
n
169
PRO
169
A
LEU
170
n
170
LEU
170
A
THR
171
n
171
THR
171
A
GLY
172
n
172
GLY
172
A
MET
173
n
173
MET
173
A
SER
174
n
174
SER
174
A
LYS
175
n
175
LYS
175
A
ALA
176
n
176
ALA
176
A
THR
177
n
177
THR
177
A
GLN
178
n
178
GLN
178
A
GLN
179
n
179
GLN
179
A
GLN
180
n
180
GLN
180
A
LEU
181
n
181
LEU
181
A
ILE
182
n
182
ILE
182
A
ASP
183
n
183
ASP
183
A
ASP
184
n
184
ASP
184
A
HIS
185
n
185
HIS
185
A
PHE
186
n
186
PHE
186
A
LEU
187
n
187
LEU
187
A
PHE
188
n
188
PHE
188
A
LYS
189
n
189
LYS
189
A
GLU
190
n
190
GLU
190
A
GLY
191
n
191
GLY
191
A
ASP
192
n
192
ASP
192
A
ARG
193
n
193
ARG
193
A
PHE
194
n
194
PHE
194
A
LEU
195
n
195
LEU
195
A
GLN
196
n
196
GLN
196
A
THR
197
n
197
THR
197
A
ALA
198
n
198
ALA
198
A
ASN
199
n
199
ASN
199
A
ALA
200
n
200
ALA
200
A
CYS
201
n
201
CYS
201
A
ARG
202
n
202
ARG
202
A
TYR
203
n
203
TYR
203
A
TRP
204
n
204
TRP
204
A
PRO
205
n
205
PRO
205
A
THR
206
n
206
THR
206
A
GLY
207
n
207
GLY
207
A
ARG
208
n
208
ARG
208
A
GLY
209
n
209
GLY
209
A
ILE
210
n
210
ILE
210
A
PHE
211
n
211
PHE
211
A
HIS
212
n
212
HIS
212
A
ASN
213
n
213
ASN
213
A
ASP
214
n
214
ASP
214
A
ALA
215
n
215
ALA
215
A
LYS
216
n
216
LYS
216
A
THR
217
n
217
THR
217
A
PHE
218
n
218
PHE
218
A
LEU
219
n
219
LEU
219
A
VAL
220
n
220
VAL
220
A
TRP
221
n
221
TRP
221
A
VAL
222
n
222
VAL
222
A
ASN
223
n
223
ASN
223
A
GLU
224
n
224
GLU
224
A
GLU
225
n
225
GLU
225
A
ASP
226
n
226
ASP
226
A
HIS
227
n
227
HIS
227
A
LEU
228
n
228
LEU
228
A
ARG
229
n
229
ARG
229
A
ILE
230
n
230
ILE
230
A
ILE
231
n
231
ILE
231
A
SER
232
n
232
SER
232
A
MET
233
n
233
MET
233
A
GLN
234
n
234
GLN
234
A
LYS
235
n
235
LYS
235
A
GLY
236
n
236
GLY
236
A
GLY
237
n
237
GLY
237
A
ASP
238
n
238
ASP
238
A
LEU
239
n
239
LEU
239
A
LYS
240
n
240
LYS
240
A
THR
241
n
241
THR
241
A
VAL
242
n
242
VAL
242
A
TYR
243
n
243
TYR
243
A
LYS
244
n
244
LYS
244
A
ARG
245
n
245
ARG
245
A
LEU
246
n
246
LEU
246
A
VAL
247
n
247
VAL
247
A
THR
248
n
248
THR
248
A
ALA
249
n
249
ALA
249
A
VAL
250
n
250
VAL
250
A
ASP
251
n
251
ASP
251
A
ASN
252
n
252
ASN
252
A
ILE
253
n
253
ILE
253
A
GLU
254
n
254
GLU
254
A
SER
255
n
255
SER
255
A
LYS
256
n
256
LYS
256
A
LEU
257
n
257
LEU
257
A
PRO
258
n
258
PRO
258
A
PHE
259
n
259
PHE
259
A
SER
260
n
260
SER
260
A
HIS
261
n
261
HIS
261
A
ASP
262
n
262
ASP
262
A
ASP
263
n
263
ASP
263
A
ARG
264
n
264
ARG
264
A
PHE
265
n
265
PHE
265
A
GLY
266
n
266
GLY
266
A
PHE
267
n
267
PHE
267
A
LEU
268
n
268
LEU
268
A
THR
269
n
269
THR
269
A
PHE
270
n
270
PHE
270
A
CYS
271
n
271
CYS
271
A
PRO
272
n
272
PRO
272
A
THR
273
n
273
THR
273
A
ASN
274
n
274
ASN
274
A
LEU
275
n
275
LEU
275
A
GLY
276
n
276
GLY
276
A
THR
277
n
277
THR
277
A
THR
278
n
278
THR
278
A
MET
279
n
279
MET
279
A
ARG
280
n
280
ARG
280
A
ALA
281
n
281
ALA
281
A
SER
282
n
282
SER
282
A
VAL
283
n
283
VAL
283
A
HIS
284
n
284
HIS
284
A
ILE
285
n
285
ILE
285
A
GLN
286
n
286
GLN
286
A
LEU
287
n
287
LEU
287
A
PRO
288
n
288
PRO
288
A
LYS
289
n
289
LYS
289
A
LEU
290
n
290
LEU
290
A
ALA
291
n
291
ALA
291
A
LYS
292
n
292
LYS
292
A
ASP
293
n
293
ASP
293
A
ARG
294
n
294
ARG
294
A
LYS
295
n
295
LYS
295
A
VAL
296
n
296
VAL
296
A
LEU
297
n
297
LEU
297
A
GLU
298
n
298
GLU
298
A
ASP
299
n
299
ASP
299
A
ILE
300
n
300
ILE
300
A
ALA
301
n
301
ALA
301
A
SER
302
n
302
SER
302
A
LYS
303
n
303
LYS
303
A
PHE
304
n
304
PHE
304
A
ASN
305
n
305
ASN
305
A
LEU
306
n
306
LEU
306
A
GLN
307
n
307
GLN
307
A
VAL
308
n
308
VAL
308
A
ARG
309
n
309
ARG
309
A
GLY
310
n
310
GLY
310
A
THR
311
n
311
THR
311
A
ARG
312
n
312
ARG
312
A
GLY
313
n
313
GLY
313
A
GLU
314
n
314
GLU
314
A
HIS
315
n
315
HIS
315
A
THR
316
n
316
THR
316
A
GLU
317
n
317
GLU
317
A
SER
318
n
318
SER
318
A
GLU
319
n
319
GLU
319
A
GLY
320
n
320
GLY
320
A
GLY
321
n
321
GLY
321
A
VAL
322
n
322
VAL
322
A
TYR
323
n
323
TYR
323
A
ASP
324
n
324
ASP
324
A
ILE
325
n
325
ILE
325
A
SER
326
n
326
SER
326
A
ASN
327
n
327
ASN
327
A
LYS
328
n
328
LYS
328
A
ARG
329
n
329
ARG
329
A
ARG
330
n
330
ARG
330
A
LEU
331
n
331
LEU
331
A
GLY
332
n
332
GLY
332
A
LEU
333
n
333
LEU
333
A
THR
334
n
334
THR
334
A
GLU
335
n
335
GLU
335
A
TYR
336
n
336
TYR
336
A
GLN
337
n
337
GLN
337
A
ALA
338
n
338
ALA
338
A
VAL
339
n
339
VAL
339
A
ARG
340
n
340
ARG
340
A
GLU
341
n
341
GLU
341
A
MET
342
n
342
MET
342
A
GLN
343
n
343
GLN
343
A
ASP
344
n
344
ASP
344
A
GLY
345
n
345
GLY
345
A
ILE
346
n
346
ILE
346
A
LEU
347
n
347
LEU
347
A
GLU
348
n
348
GLU
348
A
MET
349
n
349
MET
349
A
ILE
350
n
350
ILE
350
A
LYS
351
n
351
LYS
351
A
MET
352
n
352
MET
352
A
GLU
353
n
353
GLU
353
A
LYS
354
n
354
LYS
354
A
ALA
355
n
355
ALA
355
A
ALA
356
n
356
ALA
356
A
ALA
357
n
357
ALA
357
A
1.1001
0.0457
-0.1735
1.7675
-0.2823
1.9733
-0.0907
-0.3273
-0.7328
-0.0516
-0.1462
-0.7315
0.7586
0.9023
-0.2310
0.3397
0.3198
0.0508
0.3389
0.2712
0.3904
refined
36.3705
-4.4483
39.7073
X-RAY DIFFRACTION
1.4958
0.6236
-0.5637
0.9499
0.2164
1.9425
0.0346
0.5117
0.0438
-0.3148
0.0610
0.0271
0.2324
-0.0278
-0.0001
0.2632
-0.0227
-0.0156
0.2561
0.0108
0.2067
refined
24.3837
7.1715
23.1503
X-RAY DIFFRACTION
1.2775
-0.0113
-0.5429
0.0006
0.0047
0.2308
0.5362
0.2699
0.7598
-0.2981
-0.0539
-0.1981
-0.7944
-0.0049
0.2917
0.4527
0.0078
0.1748
0.1178
0.0727
0.4673
refined
24.0354
23.4521
31.0868
X-RAY DIFFRACTION
2.3931
0.1802
-0.6736
0.9040
0.6116
2.3851
0.0735
0.0341
0.1175
0.1008
-0.1337
0.1921
0.2196
-0.4203
-0.0597
0.1433
-0.0518
0.0058
0.1084
0.0327
0.1655
refined
11.5898
8.7297
41.6374
X-RAY DIFFRACTION
0.5642
-0.3426
-0.2009
0.3872
-0.1084
0.3709
0.1000
-0.4948
-0.0665
0.5599
-0.0473
-0.3864
-0.0394
0.3226
0.0000
0.3346
-0.0895
-0.0295
0.3665
0.0408
0.2676
refined
23.1290
10.3392
53.1243
X-RAY DIFFRACTION
A
2
A
102
X-RAY DIFFRACTION
1
( CHAIN A AND ( RESID 2:102 OR RESID 193:201 OR RESID 269:276 ) )
A
193
A
201
X-RAY DIFFRACTION
1
( CHAIN A AND ( RESID 2:102 OR RESID 193:201 OR RESID 269:276 ) )
A
269
A
276
X-RAY DIFFRACTION
1
( CHAIN A AND ( RESID 2:102 OR RESID 193:201 OR RESID 269:276 ) )
A
129
A
155
X-RAY DIFFRACTION
2
( CHAIN A AND ( RESID 129:155 OR RESID 167:173 OR RESID 202:213 OR RESID 221:229 OR RESID 258:259 ) )
A
167
A
173
X-RAY DIFFRACTION
2
( CHAIN A AND ( RESID 129:155 OR RESID 167:173 OR RESID 202:213 OR RESID 221:229 OR RESID 258:259 ) )
A
202
A
213
X-RAY DIFFRACTION
2
( CHAIN A AND ( RESID 129:155 OR RESID 167:173 OR RESID 202:213 OR RESID 221:229 OR RESID 258:259 ) )
A
221
A
229
X-RAY DIFFRACTION
2
( CHAIN A AND ( RESID 129:155 OR RESID 167:173 OR RESID 202:213 OR RESID 221:229 OR RESID 258:259 ) )
A
258
A
259
X-RAY DIFFRACTION
2
( CHAIN A AND ( RESID 129:155 OR RESID 167:173 OR RESID 202:213 OR RESID 221:229 OR RESID 258:259 ) )
A
174
A
187
X-RAY DIFFRACTION
3
( CHAIN A AND RESID 174:187 )
A
103
A
128
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
156
A
166
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
216
A
220
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
233
A
257
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
260
A
268
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
277
A
290
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
330
A
357
X-RAY DIFFRACTION
4
( CHAIN A AND ( RESID 103:128 OR RESID 156:166 OR RESID 216:220 OR RESID 233:257 OR RESID 260:268 OR RESID 277:290 OR RESID 330:357 ) )
A
293
A
310
X-RAY DIFFRACTION
5
( CHAIN A AND ( RESID 293:310 OR RESID 321:329 ) )
A
321
A
329
X-RAY DIFFRACTION
5
( CHAIN A AND ( RESID 293:310 OR RESID 321:329 ) )
author_and_software_defined_assembly
PISA
1
monomeric
A
ADP
401
B
O1B
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
ADP
401
B
O1A
ADP
1_555
83.9
A
ADP
401
B
O1B
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
695
F
O
HOH
1_555
96.6
A
ADP
401
B
O1A
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
695
F
O
HOH
1_555
174.5
A
ADP
401
B
O1B
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
696
F
O
HOH
1_555
76.7
A
ADP
401
B
O1A
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
696
F
O
HOH
1_555
71.1
A
HOH
695
F
O
HOH
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
696
F
O
HOH
1_555
103.7
A
ADP
401
B
O1B
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
697
F
O
HOH
1_555
114.3
A
ADP
401
B
O1A
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
697
F
O
HOH
1_555
78.6
A
HOH
695
F
O
HOH
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
697
F
O
HOH
1_555
106.0
A
HOH
696
F
O
HOH
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
697
F
O
HOH
1_555
146.6
A
ADP
401
B
O1B
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
698
F
O
HOH
1_555
151.7
A
ADP
401
B
O1A
ADP
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
698
F
O
HOH
1_555
78.7
A
HOH
695
F
O
HOH
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
698
F
O
HOH
1_555
98.6
A
HOH
696
F
O
HOH
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
698
F
O
HOH
1_555
76.6
A
HOH
697
F
O
HOH
1_555
A
MG
402
C
MG
MG
1_555
A
HOH
698
F
O
HOH
1_555
84.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
168
A
N
TYR
168
A
O
ILE
210
A
O
ILE
210
A
N
PHE
211
A
N
PHE
211
A
O
VAL
220
A
O
VAL
220
A
N
LEU
219
A
N
LEU
219
A
O
ILE
231
A
O
ILE
231
A
O
ILE
230
A
O
ILE
230
A
N
CYS
127
A
N
CYS
127
A
N
ILE
121
A
N
ILE
121
A
O
HIS
284
A
O
HIS
284
A
N
ILE
285
A
N
ILE
285
A
O
TYR
323
A
O
TYR
323
A
O
ASP
324
A
O
ASP
324
A
N
ARG
309
A
N
ARG
309
A
N
ASP
262
A
N
ASP
262
A
O
GLY
266
A
O
GLY
266
1
A
MET
1
A
MET
1
1
Y
1
A
A
OG
O
SER
HOH
25
659
1.98
1
A
A
O
O
LYS
HOH
28
704
2.12
1
A
A
N
O
LEU
HOH
31
704
2.18
1
A
PHE
93
-160.96
97.93
1
A
ASP
114
-159.79
73.14
1
A
ASP
161
57.01
-129.34
1
A
GLU
224
-85.50
-119.51
1
A
LYS
292
-54.67
6.70
1
A
ASP
293
-173.48
108.34
-6.7010
0.0000
-0.0000
13.4519
-0.0000
-6.7508
0.2286
0.1934
0.1944
2.157
29.648
600
19862
19862
3.02
96.70
0.30
Used same test set as PDB entry 1M15
1
1.00
1.0
ISOMORPHOUS WITH PDB ENTRY 1M15
24.02
1.06
1.30
PDB ENTRY 1M15
ML
FLAT BULK SOLVENT MODEL
35.772
0.313
2.157
29.648
239
3097
41
0
2817
0.006
2963
0.892
4001
14.099
1121
0.065
438
0.005
510
0.3184
0.2473
2.3738
143
4448
91.00
0.2783
0.2257
2.7171
146
4761
97.00
0.2186
0.2044
3.4225
154
4915
99.00
0.1982
0.1675
29.6505
157
5138
100.00
2.157
29.648
4GW2
19862
19862
1.0
1.0
1
96.70
2.157
2.374
1
91.0
data collection
CrystalClear
model building
PHENIX
(phenix.refine: 1.7_650)
refinement
PHENIX
(phenix.refine: 1.7_650)
data reduction
DENZO
data scaling
SCALEPACK
phasing
PHENIX
1.7_650
Crystal structure of arginine kinase in complex with L-ornithine, MgADP, and nitrate.
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
ASP
3
A
ASP
3
HELX_P
A
ALA
20
A
ALA
20
1
1
18
A
SER
25
A
SER
25
HELX_P
A
LEU
31
A
LEU
31
1
2
7
A
THR
32
A
THR
32
HELX_P
A
LYS
40
A
LYS
40
1
3
9
A
THR
49
A
THR
49
HELX_P
A
ASN
60
A
ASN
60
1
4
12
A
GLU
73
A
GLU
73
HELX_P
A
PHE
78
A
PHE
78
1
5
6
A
PHE
78
A
PHE
78
HELX_P
A
HIS
90
A
HIS
90
1
6
13
A
ASP
106
A
ASP
106
HELX_P
A
LEU
110
A
LEU
110
5
7
5
A
PHE
136
A
PHE
136
HELX_P
A
LEU
140
A
LEU
140
5
8
5
A
THR
141
A
THR
141
HELX_P
A
SER
157
A
SER
157
1
9
17
A
SER
158
A
SER
158
HELX_P
A
MET
159
A
MET
159
5
10
2
A
GLU
160
A
GLU
160
HELX_P
A
LYS
164
A
LYS
164
5
11
5
A
SER
174
A
SER
174
HELX_P
A
ASP
184
A
ASP
184
1
12
11
A
ASP
192
A
ASP
192
HELX_P
A
THR
197
A
THR
197
1
13
6
A
ASP
238
A
ASP
238
HELX_P
A
SER
255
A
SER
255
1
14
18
A
CYS
271
A
CYS
271
HELX_P
A
LEU
275
A
LEU
275
5
15
5
A
ASP
293
A
ASP
293
HELX_P
A
PHE
304
A
PHE
304
1
16
12
A
THR
334
A
THR
334
HELX_P
A
ALA
356
A
ALA
356
1
17
23
metalc
2.062
A
ADP
401
B
O1B
ADP
1_555
A
MG
402
C
MG
MG
1_555
metalc
2.330
A
ADP
401
B
O1A
ADP
1_555
A
MG
402
C
MG
MG
1_555
metalc
2.056
A
MG
402
C
MG
MG
1_555
A
HOH
695
F
O
HOH
1_555
metalc
2.059
A
MG
402
C
MG
MG
1_555
A
HOH
696
F
O
HOH
1_555
metalc
2.067
A
MG
402
C
MG
MG
1_555
A
HOH
697
F
O
HOH
1_555
metalc
2.092
A
MG
402
C
MG
MG
1_555
A
HOH
698
F
O
HOH
1_555
TRANSFERASE
Arginine kinase, Phosphagen kinase, Transferase, Transition state analog, Kinase
A
TRP
204
A
TRP
204
1
A
PRO
205
A
PRO
205
4.14
KARG_LIMPO
UNP
1
1
P51541
MVDQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGP
LFDPIIDDYHGGFKLTDKHPPKEWGDINTLVDLDPGGQFIISTRVRCGRSLQGYPFNPCLTAEQYKEMEEKVSSTLSSME
DELKGTYYPLTGMSKATQQQLIDDHFLFKEGDRFLQTANACRYWPTGRGIFHNDAKTFLVWVNEEDHLRIISMQKGGDLK
TVYKRLVTAVDNIESKLPFSHDDRFGFLTFCPTNLGTTMRASVHIQLPKLAKDRKVLEDIASKFNLQVRGTRGEHTESEG
GVYDISNKRRLGLTEYQAVREMQDGILEMIKMEKAAA
1
357
4GW2
1
357
P51541
A
1
1
357
1
GLU
engineered mutation
GLN
103
4GW2
A
P51541
UNP
103
103
1
ASP
engineered mutation
GLY
112
4GW2
A
P51541
UNP
112
112
1
GLY
engineered mutation
ALA
116
4GW2
A
P51541
UNP
116
116
8
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
166
A
THR
166
A
PRO
169
A
PRO
169
A
GLY
209
A
GLY
209
A
HIS
212
A
HIS
212
A
PHE
218
A
PHE
218
A
VAL
222
A
VAL
222
A
LEU
228
A
LEU
228
A
LYS
235
A
LYS
235
A
ILE
120
A
ILE
120
A
ARG
129
A
ARG
129
A
ARG
280
A
ARG
280
A
GLN
286
A
GLN
286
A
VAL
322
A
VAL
322
A
ASN
327
A
ASN
327
A
LEU
306
A
LEU
306
A
ARG
309
A
ARG
309
A
HIS
261
A
HIS
261
A
ASP
262
A
ASP
262
A
GLY
266
A
GLY
266
A
PHE
267
A
PHE
267
BINDING SITE FOR RESIDUE ADP A 401
A
ADP
401
Software
26
BINDING SITE FOR RESIDUE MG A 402
A
MG
402
Software
5
BINDING SITE FOR RESIDUE ORN A 403
A
ORN
403
Software
11
BINDING SITE FOR RESIDUE NO3 A 404
A
NO3
404
Software
9
A
SER
122
A
SER
122
26
1_555
A
ARG
124
A
ARG
124
26
1_555
A
ARG
126
A
ARG
126
26
1_555
A
HIS
185
A
HIS
185
26
1_555
A
TRP
221
A
TRP
221
26
1_555
A
ARG
229
A
ARG
229
26
1_555
A
MET
233
A
MET
233
26
1_555
A
ARG
280
A
ARG
280
26
1_555
A
SER
282
A
SER
282
26
1_555
A
VAL
283
A
VAL
283
26
1_555
A
HIS
284
A
HIS
284
26
1_555
A
ARG
309
A
ARG
309
26
1_555
A
THR
311
A
THR
311
26
1_555
A
GLY
313
A
GLY
313
26
1_555
A
GLU
314
A
GLU
314
26
1_555
A
ASP
324
A
ASP
324
26
1_555
A
MG
402
C
MG
26
1_555
A
NO3
404
E
NO3
26
1_555
A
HOH
586
F
HOH
26
1_555
A
HOH
590
F
HOH
26
1_555
A
HOH
593
F
HOH
26
1_555
A
HOH
595
F
HOH
26
1_555
A
HOH
695
F
HOH
26
1_555
A
HOH
696
F
HOH
26
1_555
A
HOH
697
F
HOH
26
1_555
A
HOH
698
F
HOH
26
1_555
A
ADP
401
B
ADP
5
1_555
A
HOH
695
F
HOH
5
1_555
A
HOH
696
F
HOH
5
1_555
A
HOH
697
F
HOH
5
1_555
A
HOH
698
F
HOH
5
1_555
A
SER
63
A
SER
63
11
1_555
A
GLY
64
A
GLY
64
11
1_555
A
VAL
65
A
VAL
65
11
1_555
A
GLY
66
A
GLY
66
11
1_555
A
TYR
68
A
TYR
68
11
1_555
A
GLU
314
A
GLU
314
11
1_555
A
HIS
315
A
HIS
315
11
1_555
A
NO3
404
E
NO3
11
1_555
A
HOH
570
F
HOH
11
1_555
A
HOH
571
F
HOH
11
1_555
A
HOH
614
F
HOH
11
1_555
A
ARG
126
A
ARG
126
9
1_555
A
GLU
225
A
GLU
225
9
1_555
A
THR
273
A
THR
273
9
1_555
A
ASN
274
A
ASN
274
9
1_555
A
ARG
309
A
ARG
309
9
1_555
A
ADP
401
B
ADP
9
1_555
A
ORN
403
D
ORN
9
1_555
A
HOH
567
F
HOH
9
1_555
A
HOH
696
F
HOH
9
1_555
19
P 21 21 21