0.012779
0.000000
0.009310
-0.000000
0.021134
0.000000
0.000000
-0.000000
0.019366
0.00000
0.00000
0.00000
Samygina, V.R.
Ochoa-Lizarralde, B.
Popov, A.N.
Malinina, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
126.07
90.00
78.253
47.317
63.887
C36 H69 N O14 S2
804.061
N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
C
N
3
N
C
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
C
N
8
N
C
N
9
N
C
N
10
N
C
N
11
N
C
N
12
N
C
N
13
N
C
N
14
N
C
N
15
N
C
N
16
R
C
N
17
N
O
N
18
S
C
N
19
N
C
N
20
N
O
N
21
R
C
N
22
N
O
N
23
R
C
N
24
N
O
N
25
S
C
N
26
N
O
N
27
N
S
N
28
N
O
N
29
N
O
N
30
N
O
N
31
S
C
N
32
N
O
N
33
R
C
N
34
N
C
N
35
N
O
N
36
N
S
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
N
N
41
N
C
N
42
N
O
N
43
N
C
N
44
N
C
N
45
N
C
N
46
N
C
N
47
N
C
N
48
N
C
N
49
N
C
N
50
N
C
N
51
N
C
N
52
N
C
N
53
N
C
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
N
N
144
N
C
N
145
N
N
N
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
N
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
O
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
R
C
N
198
N
C
N
199
N
O
N
200
N
C
N
201
N
S
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
N
N
219
N
O
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
O
N
238
N
O
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
N
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
Y
264
N
C
Y
265
N
N
Y
266
N
C
Y
267
N
C
Y
268
N
N
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
S
C
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
N
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
S
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
N
400
N
C
N
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
N
417
N
O
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
R
C
N
431
N
O
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
Y
451
N
N
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
C
Y
456
N
C
N
457
N
O
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
N
N
471
S
C
N
472
N
C
N
473
N
O
N
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
C
Y
480
N
C
N
481
N
O
N
482
N
O
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
N
N
495
S
C
N
496
N
C
N
497
N
O
N
498
N
C
N
499
N
C
N
500
N
C
N
501
N
O
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
E
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
doub
N
42
N
sing
N
43
N
doub
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
Y
262
N
sing
Y
263
N
doub
Y
264
N
doub
N
265
N
sing
Y
266
N
sing
N
267
N
sing
Y
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
Y
370
N
doub
Y
371
N
sing
Y
372
N
sing
N
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
doub
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
Y
439
N
doub
Y
440
N
sing
Y
441
N
sing
N
442
N
sing
Y
443
N
doub
Y
444
N
sing
Y
445
N
sing
N
446
N
sing
Y
447
N
sing
Y
448
N
doub
N
449
N
sing
Y
450
N
doub
N
451
N
sing
Y
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
doub
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
Y
467
N
doub
Y
468
N
sing
Y
469
N
sing
N
470
N
sing
Y
471
N
doub
N
472
N
sing
Y
473
N
doub
N
474
N
sing
Y
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
doub
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
69
603
616
10.1107/S0907444913000024
23519669
Structural insights into lipid-dependent reversible dimerization of human GLTP.
2013
10.2210/pdb4gxd/pdb
pdb_00004gxd
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2010-09-01
ADSC QUANTUM 315
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9754
1.0
ID2
ESRF
0.9754
SYNCHROTRON
ESRF BEAMLINE ID2
23861.820
Glycolipid transfer protein
D48V
1
man
polymer
804.061
N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide
1
syn
non-polymer
18.015
water
41
nat
water
GLTP
no
no
MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKAVISGNITKIKAVYDTNPAKFRTLQNILEVEKEM
YGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSD
FLKALSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQMNAELNYKV
MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKAVISGNITKIKAVYDTNPAKFRTLQNILEVEKEM
YGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSD
FLKALSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQMNAELNYKV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
GLTP
9606
Homo sapiens
562
Escherichia coli
1
2.00
38.60
VAPOR DIFFUSION, HANGING DROP
7.0
15% PEG 3350, 0.1M MES pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
1
0
2013-04-10
1
1
2024-03-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2012-09-04
REL
REL
0SG
N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide
HOH
water
DIS
1
2
0SG
0SG
301
A
HOH
1
3
HOH
HOH
401
A
HOH
2
3
HOH
HOH
402
A
HOH
3
3
HOH
HOH
403
A
HOH
4
3
HOH
HOH
404
A
HOH
5
3
HOH
HOH
405
A
HOH
6
3
HOH
HOH
406
A
HOH
7
3
HOH
HOH
407
A
HOH
8
3
HOH
HOH
408
A
HOH
9
3
HOH
HOH
409
A
HOH
10
3
HOH
HOH
410
A
HOH
11
3
HOH
HOH
411
A
HOH
12
3
HOH
HOH
412
A
HOH
13
3
HOH
HOH
413
A
HOH
14
3
HOH
HOH
414
A
HOH
15
3
HOH
HOH
415
A
HOH
16
3
HOH
HOH
416
A
HOH
17
3
HOH
HOH
417
A
HOH
18
3
HOH
HOH
418
A
HOH
19
3
HOH
HOH
419
A
HOH
20
3
HOH
HOH
420
A
HOH
21
3
HOH
HOH
421
A
HOH
22
3
HOH
HOH
422
A
HOH
23
3
HOH
HOH
423
A
HOH
24
3
HOH
HOH
424
A
HOH
25
3
HOH
HOH
425
A
HOH
26
3
HOH
HOH
426
A
HOH
27
3
HOH
HOH
427
A
HOH
28
3
HOH
HOH
428
A
HOH
29
3
HOH
HOH
429
A
HOH
30
3
HOH
HOH
430
A
HOH
31
3
HOH
HOH
431
A
HOH
32
3
HOH
HOH
432
A
HOH
33
3
HOH
HOH
433
A
HOH
34
3
HOH
HOH
434
A
HOH
35
3
HOH
HOH
435
A
HOH
36
3
HOH
HOH
436
A
HOH
37
3
HOH
HOH
437
A
HOH
38
3
HOH
HOH
438
A
HOH
39
3
HOH
HOH
439
A
HOH
40
3
HOH
HOH
440
A
HOH
41
3
HOH
HOH
441
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
LYS
10
n
10
LYS
10
A
PRO
11
n
11
PRO
11
A
LEU
12
n
12
LEU
12
A
PRO
13
n
13
PRO
13
A
ALA
14
n
14
ALA
14
A
ASP
15
n
15
ASP
15
A
LYS
16
n
16
LYS
16
A
GLN
17
n
17
GLN
17
A
ILE
18
n
18
ILE
18
A
GLU
19
n
19
GLU
19
A
THR
20
n
20
THR
20
A
GLY
21
n
21
GLY
21
A
PRO
22
n
22
PRO
22
A
PHE
23
n
23
PHE
23
A
LEU
24
n
24
LEU
24
A
GLU
25
n
25
GLU
25
A
ALA
26
n
26
ALA
26
A
VAL
27
n
27
VAL
27
A
SER
28
n
28
SER
28
A
HIS
29
n
29
HIS
29
A
LEU
30
n
30
LEU
30
A
PRO
31
n
31
PRO
31
A
PRO
32
n
32
PRO
32
A
PHE
33
n
33
PHE
33
A
PHE
34
n
34
PHE
34
A
ASP
35
n
35
ASP
35
A
CYS
36
n
36
CYS
36
A
LEU
37
n
37
LEU
37
A
GLY
38
n
38
GLY
38
A
SER
39
n
39
SER
39
A
PRO
40
n
40
PRO
40
A
VAL
41
n
41
VAL
41
A
PHE
42
n
42
PHE
42
A
THR
43
n
43
THR
43
A
PRO
44
n
44
PRO
44
A
ILE
45
n
45
ILE
45
A
LYS
46
n
46
LYS
46
A
ALA
47
n
47
ALA
47
A
VAL
48
n
48
VAL
48
A
ILE
49
n
49
ILE
49
A
SER
50
n
50
SER
50
A
GLY
51
n
51
GLY
51
A
ASN
52
n
52
ASN
52
A
ILE
53
n
53
ILE
53
A
THR
54
n
54
THR
54
A
LYS
55
n
55
LYS
55
A
ILE
56
n
56
ILE
56
A
LYS
57
n
57
LYS
57
A
ALA
58
n
58
ALA
58
A
VAL
59
n
59
VAL
59
A
TYR
60
n
60
TYR
60
A
ASP
61
n
61
ASP
61
A
THR
62
n
62
THR
62
A
ASN
63
n
63
ASN
63
A
PRO
64
n
64
PRO
64
A
ALA
65
n
65
ALA
65
A
LYS
66
n
66
LYS
66
A
PHE
67
n
67
PHE
67
A
ARG
68
n
68
ARG
68
A
THR
69
n
69
THR
69
A
LEU
70
n
70
LEU
70
A
GLN
71
n
71
GLN
71
A
ASN
72
n
72
ASN
72
A
ILE
73
n
73
ILE
73
A
LEU
74
n
74
LEU
74
A
GLU
75
n
75
GLU
75
A
VAL
76
n
76
VAL
76
A
GLU
77
n
77
GLU
77
A
LYS
78
n
78
LYS
78
A
GLU
79
n
79
GLU
79
A
MET
80
n
80
MET
80
A
TYR
81
n
81
TYR
81
A
GLY
82
n
82
GLY
82
A
ALA
83
n
83
ALA
83
A
GLU
84
n
84
GLU
84
A
TRP
85
n
85
TRP
85
A
PRO
86
n
86
PRO
86
A
LYS
87
n
87
LYS
87
A
VAL
88
n
88
VAL
88
A
GLY
89
n
89
GLY
89
A
ALA
90
n
90
ALA
90
A
THR
91
n
91
THR
91
A
LEU
92
n
92
LEU
92
A
ALA
93
n
93
ALA
93
A
LEU
94
n
94
LEU
94
A
MET
95
n
95
MET
95
A
TRP
96
n
96
TRP
96
A
LEU
97
n
97
LEU
97
A
LYS
98
n
98
LYS
98
A
ARG
99
n
99
ARG
99
A
GLY
100
n
100
GLY
100
A
LEU
101
n
101
LEU
101
A
ARG
102
n
102
ARG
102
A
PHE
103
n
103
PHE
103
A
ILE
104
n
104
ILE
104
A
GLN
105
n
105
GLN
105
A
VAL
106
n
106
VAL
106
A
PHE
107
n
107
PHE
107
A
LEU
108
n
108
LEU
108
A
GLN
109
n
109
GLN
109
A
SER
110
n
110
SER
110
A
ILE
111
n
111
ILE
111
A
CYS
112
n
112
CYS
112
A
ASP
113
n
113
ASP
113
A
GLY
114
n
114
GLY
114
A
GLU
115
n
115
GLU
115
A
ARG
116
n
116
ARG
116
A
ASP
117
n
117
ASP
117
A
GLU
118
n
118
GLU
118
A
ASN
119
n
119
ASN
119
A
HIS
120
n
120
HIS
120
A
PRO
121
n
121
PRO
121
A
ASN
122
n
122
ASN
122
A
LEU
123
n
123
LEU
123
A
ILE
124
n
124
ILE
124
A
ARG
125
n
125
ARG
125
A
VAL
126
n
126
VAL
126
A
ASN
127
n
127
ASN
127
A
ALA
128
n
128
ALA
128
A
THR
129
n
129
THR
129
A
LYS
130
n
130
LYS
130
A
ALA
131
n
131
ALA
131
A
TYR
132
n
132
TYR
132
A
GLU
133
n
133
GLU
133
A
MET
134
n
134
MET
134
A
ALA
135
n
135
ALA
135
A
LEU
136
n
136
LEU
136
A
LYS
137
n
137
LYS
137
A
LYS
138
n
138
LYS
138
A
TYR
139
n
139
TYR
139
A
HIS
140
n
140
HIS
140
A
GLY
141
n
141
GLY
141
A
TRP
142
n
142
TRP
142
A
ILE
143
n
143
ILE
143
A
VAL
144
n
144
VAL
144
A
GLN
145
n
145
GLN
145
A
LYS
146
n
146
LYS
146
A
ILE
147
n
147
ILE
147
A
PHE
148
n
148
PHE
148
A
GLN
149
n
149
GLN
149
A
ALA
150
n
150
ALA
150
A
ALA
151
n
151
ALA
151
A
LEU
152
n
152
LEU
152
A
TYR
153
n
153
TYR
153
A
ALA
154
n
154
ALA
154
A
ALA
155
n
155
ALA
155
A
PRO
156
n
156
PRO
156
A
TYR
157
n
157
TYR
157
A
LYS
158
n
158
LYS
158
A
SER
159
n
159
SER
159
A
ASP
160
n
160
ASP
160
A
PHE
161
n
161
PHE
161
A
LEU
162
n
162
LEU
162
A
LYS
163
n
163
LYS
163
A
ALA
164
n
164
ALA
164
A
LEU
165
n
165
LEU
165
A
SER
166
n
166
SER
166
A
LYS
167
n
167
LYS
167
A
GLY
168
n
168
GLY
168
A
GLN
169
n
169
GLN
169
A
ASN
170
n
170
ASN
170
A
VAL
171
n
171
VAL
171
A
THR
172
n
172
THR
172
A
GLU
173
n
173
GLU
173
A
GLU
174
n
174
GLU
174
A
GLU
175
n
175
GLU
175
A
CYS
176
n
176
CYS
176
A
LEU
177
n
177
LEU
177
A
GLU
178
n
178
GLU
178
A
LYS
179
n
179
LYS
179
A
ILE
180
n
180
ILE
180
A
ARG
181
n
181
ARG
181
A
LEU
182
n
182
LEU
182
A
PHE
183
n
183
PHE
183
A
LEU
184
n
184
LEU
184
A
VAL
185
n
185
VAL
185
A
ASN
186
n
186
ASN
186
A
TYR
187
n
187
TYR
187
A
THR
188
n
188
THR
188
A
ALA
189
n
189
ALA
189
A
THR
190
n
190
THR
190
A
ILE
191
n
191
ILE
191
A
ASP
192
n
192
ASP
192
A
VAL
193
n
193
VAL
193
A
ILE
194
n
194
ILE
194
A
TYR
195
n
195
TYR
195
A
GLU
196
n
196
GLU
196
A
MET
197
n
197
MET
197
A
TYR
198
n
198
TYR
198
A
THR
199
n
199
THR
199
A
GLN
200
n
200
GLN
200
A
MET
201
n
201
MET
201
A
ASN
202
n
202
ASN
202
A
ALA
203
n
203
ALA
203
A
GLU
204
n
204
GLU
204
A
LEU
205
n
205
LEU
205
A
ASN
206
n
206
ASN
206
A
TYR
207
n
207
TYR
207
A
LYS
208
n
208
LYS
208
A
VAL
209
n
209
VAL
209
A
1.5621
-0.5979
0.6503
0.5587
-0.4173
0.6023
0.1799
0.0164
-0.1240
-0.0514
-0.0625
0.0295
0.0465
0.0461
-0.1174
0.0327
0.0280
-0.0126
0.1170
-0.0132
0.0344
refined
-12.0207
-0.5510
-13.4748
X-RAY DIFFRACTION
A
10
A
209
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
2
dimeric
2200
-21
19780
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_454
-x-1,y,-z-1
crystal symmetry operation
-40.6380456712
0.0000000000
-51.6397519344
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
2
A
ALA
2
1
Y
1
A
LEU
3
A
LEU
3
1
Y
1
A
LEU
4
A
LEU
4
1
Y
1
A
ALA
5
A
ALA
5
1
Y
1
A
GLU
6
A
GLU
6
1
Y
1
A
HIS
7
A
HIS
7
1
Y
1
A
LEU
8
A
LEU
8
1
Y
1
A
LEU
9
A
LEU
9
1
Y
1
5.59
0.90
118.30
123.89
A
A
A
CB
CG
OD1
ASP
ASP
ASP
15
15
15
N
1
A
ASN
63
-169.32
82.20
1
A
LEU
136
-130.94
-39.42
1
A
SER
166
-83.83
-74.63
1
A
LYS
167
136.75
-158.20
1
A
GLN
169
-15.10
94.07
1
A
ASN
170
-69.03
70.70
44.068
0.49
-0.00
0.54
-1.79
0.00
0.44
0.958
0.919
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.24878
0.18308
0.2042
0.18634
2.10
14.76
544
11145
10595
4.9
99.61
11.506
0.156
RANDOM
1
THROUGHOUT
1.0
MOLECULAR REPLACEMENT
0.264
0.214
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.10
14.76
41
1704
53
0
1610
0.015
0.020
1707
0.001
0.020
1679
1.700
1.998
2311
0.841
3.000
3884
6.142
5.000
201
35.696
24.722
72
17.324
15.000
296
19.465
15.000
6
0.099
0.200
259
0.007
0.021
1848
0.001
0.020
371
0.235
0.185
2.154
32
784
20
99.76
2.1
20.0
4GXD
12893
12893
2.0
2.0
1
99.95
2.1
2.15
1
100
data collection
ADSC
Quantum
phasing
AMoRE
refinement
REFMAC
5.7.0029
data reduction
HKL-2000
data scaling
HKL-2000
Crystal structure of D48V mutant of human GLTP bound with 12:0 disulfatide
1
N
N
2
N
N
3
N
N
A
GLU
19
A
GLU
19
HELX_P
A
SER
28
A
SER
28
1
1
10
A
HIS
29
A
HIS
29
HELX_P
A
GLY
38
A
GLY
38
5
2
10
A
SER
39
A
SER
39
HELX_P
A
VAL
41
A
VAL
41
5
3
3
A
PHE
42
A
PHE
42
HELX_P
A
ASN
63
A
ASN
63
1
4
22
A
THR
69
A
THR
69
HELX_P
A
GLY
82
A
GLY
82
1
5
14
A
ALA
83
A
ALA
83
HELX_P
A
TRP
85
A
TRP
85
5
6
3
A
VAL
88
A
VAL
88
HELX_P
A
ASP
113
A
ASP
113
1
7
26
A
ILE
124
A
ILE
124
HELX_P
A
LEU
136
A
LEU
136
1
8
13
A
LYS
137
A
LYS
137
HELX_P
A
HIS
140
A
HIS
140
5
9
4
A
GLY
141
A
GLY
141
HELX_P
A
LEU
152
A
LEU
152
1
10
12
A
TYR
153
A
TYR
153
HELX_P
A
ALA
155
A
ALA
155
5
11
3
A
TYR
157
A
TYR
157
HELX_P
A
LYS
167
A
LYS
167
1
12
11
A
THR
172
A
THR
172
HELX_P
A
MET
201
A
MET
201
1
13
30
LIPID TRANSPORT
GLTP-fold, lipid transport
A
TRP
85
A
TRP
85
1
A
PRO
86
A
PRO
86
8.05
GLTP_HUMAN
UNP
1
1
Q9NZD2
MALLAEHLLKPLPADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEM
YGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSD
FLKALSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQMNAELNYKV
1
209
4GXD
1
209
Q9NZD2
A
1
1
209
1
ASP
engineered mutation
VAL
48
4GXD
A
Q9NZD2
UNP
48
48
BINDING SITE FOR RESIDUE 0SG A 301
A
0SG
301
Software
18
A
PRO
40
A
PRO
40
18
2_454
A
VAL
41
A
VAL
41
18
2_454
A
PHE
42
A
PHE
42
18
1_555
A
PRO
44
A
PRO
44
18
2_454
A
ILE
45
A
ILE
45
18
2_454
A
ASN
52
A
ASN
52
18
1_555
A
LYS
87
A
LYS
87
18
1_555
A
ALA
93
A
ALA
93
18
1_555
A
TRP
96
A
TRP
96
18
1_555
A
TYR
132
A
TYR
132
18
2_454
A
HIS
140
A
HIS
140
18
1_555
A
HIS
140
A
HIS
140
18
2_454
A
TYR
207
A
TYR
207
18
1_555
A
VAL
209
A
VAL
209
18
1_555
A
HOH
403
C
HOH
18
1_555
A
HOH
407
C
HOH
18
1_555
A
HOH
419
C
HOH
18
1_555
A
HOH
436
C
HOH
18
2_454
5
C 1 2 1