0.015250
0.008805
0.000000
0.000000
0.017609
0.000000
0.000000
0.000000
0.015757
0.00000
0.00000
0.00000
Korman, T.P.
Bowie, J.U.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
3
90.00
90.00
120.00
65.574
65.574
63.465
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C4 H11 O3 P
138.102
DIETHYL PHOSPHONATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O4
150.173
TRIETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Plos One
1932-6203
7
e52890
e52890
10.1371/journal.pone.0052890
23300806
Crystal Structure of Proteus mirabilis Lipase, a Novel Lipase from the Proteus/Psychrophilic Subfamily of Lipase Family I.1.
2012
100
1
varimax confocal optics
IMAGE PLATE
2011-03-21
RIGAKU RAXIS HTC
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU FR-E+ DW
33851.000
Putative lipase
3.1.1.3
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
138.102
DIETHYL PHOSPHONATE
1
syn
non-polymer
150.173
TRIETHYLENE GLYCOL
1
syn
non-polymer
18.015
water
175
nat
water
no
no
MGSSHHHHHHSSGLVPRGSHMSTKYPIVLVHGLAGFNEIVGFPYFYGIADALRQDGHQVFTASLSAFNSNEVRGKQLWQF
VQTLLQETQAKKVNFIGHSQGPLACRYVAANYPDSVASVTSINGVNHGSEIADLYRRIMRKDSIPEYIVEKVLNAFGTII
STFSGHRGDPQDAIAALESLTTEQVTEFNNKYPQALPKTPGGEGDEIVNGVHYYCFGSYIQGLIAGEKGNLLDPTHAAMR
VLNTFFTEKQNDGLVGRSSMRLGKLIKDDYAQDHIDMVNQVAGLVGYNEDIVAIYTQHAKYLASKQL
MGSSHHHHHHSSGLVPRGSHMSTKYPIVLVHGLAGFNEIVGFPYFYGIADALRQDGHQVFTASLSAFNSNEVRGKQLWQF
VQTLLQETQAKKVNFIGHSQGPLACRYVAANYPDSVASVTSINGVNHGSEIADLYRRIMRKDSIPEYIVEKVLNAFGTII
STFSGHRGDPQDAIAALESLTTEQVTEFNNKYPQALPKTPGGEGDEIVNGVHYYCFGSYIQGLIAGEKGNLLDPTHAAMR
VLNTFFTEKQNDGLVGRSSMRLGKLIKDDYAQDHIDMVNQVAGLVGYNEDIVAIYTQHAKYLASKQL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC
sample
LipA
584
Proteus mirabilis
511693
Escherichia coli
BL21Gold(DE3)
plasmid
pET28
1
2.33
47.15
VAPOR DIFFUSION, HANGING DROP
5.6
0.1 M Bis-Tris propane pH 6.5, 16% w/v PEG 2000 MME, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
repository
Initial release
1
0
2013-02-06
Uninhibited Wild-type Proteus mirabilis lipase
RCSB
Y
RCSB
2012-09-04
REL
REL
CA
CALCIUM ION
DEP
DIETHYL PHOSPHONATE
PGE
TRIETHYLENE GLYCOL
HOH
water
CA
301
2
CA
CA
301
A
DEP
401
3
DEP
DEP
302
A
PGE
501
4
PGE
PGE
303
A
HOH
3
5
HOH
HOH
401
A
HOH
4
5
HOH
HOH
402
A
HOH
6
5
HOH
HOH
403
A
HOH
7
5
HOH
HOH
404
A
HOH
8
5
HOH
HOH
405
A
HOH
9
5
HOH
HOH
406
A
HOH
10
5
HOH
HOH
407
A
HOH
11
5
HOH
HOH
408
A
HOH
12
5
HOH
HOH
409
A
HOH
13
5
HOH
HOH
410
A
HOH
14
5
HOH
HOH
411
A
HOH
15
5
HOH
HOH
412
A
HOH
16
5
HOH
HOH
413
A
HOH
17
5
HOH
HOH
414
A
HOH
18
5
HOH
HOH
415
A
HOH
19
5
HOH
HOH
416
A
HOH
20
5
HOH
HOH
417
A
HOH
21
5
HOH
HOH
418
A
HOH
23
5
HOH
HOH
419
A
HOH
24
5
HOH
HOH
420
A
HOH
25
5
HOH
HOH
421
A
HOH
26
5
HOH
HOH
422
A
HOH
27
5
HOH
HOH
423
A
HOH
28
5
HOH
HOH
424
A
HOH
29
5
HOH
HOH
425
A
HOH
30
5
HOH
HOH
426
A
HOH
31
5
HOH
HOH
427
A
HOH
32
5
HOH
HOH
428
A
HOH
33
5
HOH
HOH
429
A
HOH
34
5
HOH
HOH
430
A
HOH
35
5
HOH
HOH
431
A
HOH
36
5
HOH
HOH
432
A
HOH
37
5
HOH
HOH
433
A
HOH
38
5
HOH
HOH
434
A
HOH
39
5
HOH
HOH
435
A
HOH
40
5
HOH
HOH
436
A
HOH
41
5
HOH
HOH
437
A
HOH
42
5
HOH
HOH
438
A
HOH
44
5
HOH
HOH
439
A
HOH
45
5
HOH
HOH
440
A
HOH
46
5
HOH
HOH
441
A
HOH
47
5
HOH
HOH
442
A
HOH
50
5
HOH
HOH
443
A
HOH
51
5
HOH
HOH
444
A
HOH
52
5
HOH
HOH
445
A
HOH
53
5
HOH
HOH
446
A
HOH
54
5
HOH
HOH
447
A
HOH
55
5
HOH
HOH
448
A
HOH
56
5
HOH
HOH
449
A
HOH
57
5
HOH
HOH
450
A
HOH
58
5
HOH
HOH
451
A
HOH
59
5
HOH
HOH
452
A
HOH
60
5
HOH
HOH
453
A
HOH
61
5
HOH
HOH
454
A
HOH
62
5
HOH
HOH
455
A
HOH
64
5
HOH
HOH
456
A
HOH
65
5
HOH
HOH
457
A
HOH
66
5
HOH
HOH
458
A
HOH
67
5
HOH
HOH
459
A
HOH
68
5
HOH
HOH
460
A
HOH
69
5
HOH
HOH
461
A
HOH
70
5
HOH
HOH
462
A
HOH
71
5
HOH
HOH
463
A
HOH
72
5
HOH
HOH
464
A
HOH
73
5
HOH
HOH
465
A
HOH
74
5
HOH
HOH
466
A
HOH
75
5
HOH
HOH
467
A
HOH
76
5
HOH
HOH
468
A
HOH
77
5
HOH
HOH
469
A
HOH
78
5
HOH
HOH
470
A
HOH
79
5
HOH
HOH
471
A
HOH
80
5
HOH
HOH
472
A
HOH
81
5
HOH
HOH
473
A
HOH
82
5
HOH
HOH
474
A
HOH
83
5
HOH
HOH
475
A
HOH
84
5
HOH
HOH
476
A
HOH
85
5
HOH
HOH
477
A
HOH
86
5
HOH
HOH
478
A
HOH
87
5
HOH
HOH
479
A
HOH
88
5
HOH
HOH
480
A
HOH
89
5
HOH
HOH
481
A
HOH
90
5
HOH
HOH
482
A
HOH
92
5
HOH
HOH
483
A
HOH
93
5
HOH
HOH
484
A
HOH
94
5
HOH
HOH
485
A
HOH
95
5
HOH
HOH
486
A
HOH
96
5
HOH
HOH
487
A
HOH
97
5
HOH
HOH
488
A
HOH
98
5
HOH
HOH
489
A
HOH
99
5
HOH
HOH
490
A
HOH
100
5
HOH
HOH
491
A
HOH
101
5
HOH
HOH
492
A
HOH
102
5
HOH
HOH
493
A
HOH
103
5
HOH
HOH
494
A
HOH
495
5
HOH
HOH
495
A
HOH
107
5
HOH
HOH
496
A
HOH
108
5
HOH
HOH
497
A
HOH
109
5
HOH
HOH
498
A
HOH
110
5
HOH
HOH
499
A
HOH
112
5
HOH
HOH
500
A
HOH
113
5
HOH
HOH
501
A
HOH
114
5
HOH
HOH
502
A
HOH
115
5
HOH
HOH
503
A
HOH
118
5
HOH
HOH
504
A
HOH
119
5
HOH
HOH
505
A
HOH
120
5
HOH
HOH
506
A
HOH
121
5
HOH
HOH
507
A
HOH
122
5
HOH
HOH
508
A
HOH
123
5
HOH
HOH
509
A
HOH
124
5
HOH
HOH
510
A
HOH
126
5
HOH
HOH
511
A
HOH
127
5
HOH
HOH
512
A
HOH
128
5
HOH
HOH
513
A
HOH
129
5
HOH
HOH
514
A
HOH
130
5
HOH
HOH
515
A
HOH
131
5
HOH
HOH
516
A
HOH
132
5
HOH
HOH
517
A
HOH
133
5
HOH
HOH
518
A
HOH
134
5
HOH
HOH
519
A
HOH
135
5
HOH
HOH
520
A
HOH
136
5
HOH
HOH
521
A
HOH
137
5
HOH
HOH
522
A
HOH
138
5
HOH
HOH
523
A
HOH
140
5
HOH
HOH
524
A
HOH
142
5
HOH
HOH
525
A
HOH
143
5
HOH
HOH
526
A
HOH
144
5
HOH
HOH
527
A
HOH
145
5
HOH
HOH
528
A
HOH
146
5
HOH
HOH
529
A
HOH
148
5
HOH
HOH
530
A
HOH
149
5
HOH
HOH
531
A
HOH
150
5
HOH
HOH
532
A
HOH
151
5
HOH
HOH
533
A
HOH
153
5
HOH
HOH
534
A
HOH
155
5
HOH
HOH
535
A
HOH
157
5
HOH
HOH
536
A
HOH
158
5
HOH
HOH
537
A
HOH
159
5
HOH
HOH
538
A
HOH
160
5
HOH
HOH
539
A
HOH
162
5
HOH
HOH
540
A
HOH
163
5
HOH
HOH
541
A
HOH
164
5
HOH
HOH
542
A
HOH
166
5
HOH
HOH
543
A
HOH
167
5
HOH
HOH
544
A
HOH
168
5
HOH
HOH
545
A
HOH
169
5
HOH
HOH
546
A
HOH
170
5
HOH
HOH
547
A
HOH
171
5
HOH
HOH
548
A
HOH
172
5
HOH
HOH
549
A
HOH
173
5
HOH
HOH
550
A
HOH
174
5
HOH
HOH
551
A
HOH
175
5
HOH
HOH
552
A
HOH
176
5
HOH
HOH
553
A
HOH
177
5
HOH
HOH
554
A
HOH
178
5
HOH
HOH
555
A
HOH
179
5
HOH
HOH
556
A
HOH
180
5
HOH
HOH
557
A
HOH
182
5
HOH
HOH
558
A
HOH
184
5
HOH
HOH
559
A
HOH
185
5
HOH
HOH
560
A
HOH
186
5
HOH
HOH
561
A
HOH
187
5
HOH
HOH
562
A
HOH
189
5
HOH
HOH
563
A
HOH
190
5
HOH
HOH
564
A
HOH
191
5
HOH
HOH
565
A
HOH
192
5
HOH
HOH
566
A
HOH
193
5
HOH
HOH
567
A
HOH
194
5
HOH
HOH
568
A
HOH
196
5
HOH
HOH
569
A
HOH
197
5
HOH
HOH
570
A
HOH
198
5
HOH
HOH
571
A
HOH
200
5
HOH
HOH
572
A
HOH
202
5
HOH
HOH
573
A
HOH
203
5
HOH
HOH
574
A
HOH
204
5
HOH
HOH
575
A
n
1
-19
A
n
2
-18
A
n
3
-17
A
n
4
-16
A
n
5
-15
A
n
6
-14
A
n
7
-13
A
n
8
-12
A
n
9
-11
A
n
10
-10
A
n
11
-9
A
n
12
-8
A
n
13
-7
A
n
14
-6
A
n
15
-5
A
n
16
-4
A
n
17
-3
A
n
18
-2
A
n
19
-1
A
n
20
0
A
n
21
1
A
SER
2
n
22
SER
2
A
THR
3
n
23
THR
3
A
LYS
4
n
24
LYS
4
A
TYR
5
n
25
TYR
5
A
PRO
6
n
26
PRO
6
A
ILE
7
n
27
ILE
7
A
VAL
8
n
28
VAL
8
A
LEU
9
n
29
LEU
9
A
VAL
10
n
30
VAL
10
A
HIS
11
n
31
HIS
11
A
GLY
12
n
32
GLY
12
A
LEU
13
n
33
LEU
13
A
ALA
14
n
34
ALA
14
A
GLY
15
n
35
GLY
15
A
PHE
16
n
36
PHE
16
A
ASN
17
n
37
ASN
17
A
GLU
18
n
38
GLU
18
A
ILE
19
n
39
ILE
19
A
VAL
20
n
40
VAL
20
A
GLY
21
n
41
GLY
21
A
PHE
22
n
42
PHE
22
A
PRO
23
n
43
PRO
23
A
TYR
24
n
44
TYR
24
A
PHE
25
n
45
PHE
25
A
TYR
26
n
46
TYR
26
A
GLY
27
n
47
GLY
27
A
ILE
28
n
48
ILE
28
A
ALA
29
n
49
ALA
29
A
ASP
30
n
50
ASP
30
A
ALA
31
n
51
ALA
31
A
LEU
32
n
52
LEU
32
A
ARG
33
n
53
ARG
33
A
GLN
34
n
54
GLN
34
A
ASP
35
n
55
ASP
35
A
GLY
36
n
56
GLY
36
A
HIS
37
n
57
HIS
37
A
GLN
38
n
58
GLN
38
A
VAL
39
n
59
VAL
39
A
PHE
40
n
60
PHE
40
A
THR
41
n
61
THR
41
A
ALA
42
n
62
ALA
42
A
SER
43
n
63
SER
43
A
LEU
44
n
64
LEU
44
A
SER
45
n
65
SER
45
A
ALA
46
n
66
ALA
46
A
PHE
47
n
67
PHE
47
A
ASN
48
n
68
ASN
48
A
SER
49
n
69
SER
49
A
ASN
50
n
70
ASN
50
A
GLU
51
n
71
GLU
51
A
VAL
52
n
72
VAL
52
A
ARG
53
n
73
ARG
53
A
GLY
54
n
74
GLY
54
A
LYS
55
n
75
LYS
55
A
GLN
56
n
76
GLN
56
A
LEU
57
n
77
LEU
57
A
TRP
58
n
78
TRP
58
A
GLN
59
n
79
GLN
59
A
PHE
60
n
80
PHE
60
A
VAL
61
n
81
VAL
61
A
GLN
62
n
82
GLN
62
A
THR
63
n
83
THR
63
A
LEU
64
n
84
LEU
64
A
LEU
65
n
85
LEU
65
A
GLN
66
n
86
GLN
66
A
GLU
67
n
87
GLU
67
A
THR
68
n
88
THR
68
A
GLN
69
n
89
GLN
69
A
ALA
70
n
90
ALA
70
A
LYS
71
n
91
LYS
71
A
LYS
72
n
92
LYS
72
A
VAL
73
n
93
VAL
73
A
ASN
74
n
94
ASN
74
A
PHE
75
n
95
PHE
75
A
ILE
76
n
96
ILE
76
A
GLY
77
n
97
GLY
77
A
HIS
78
n
98
HIS
78
A
SER
79
n
99
SER
79
A
GLN
80
n
100
GLN
80
A
GLY
81
n
101
GLY
81
A
PRO
82
n
102
PRO
82
A
LEU
83
n
103
LEU
83
A
ALA
84
n
104
ALA
84
A
CYS
85
n
105
CYS
85
A
ARG
86
n
106
ARG
86
A
TYR
87
n
107
TYR
87
A
VAL
88
n
108
VAL
88
A
ALA
89
n
109
ALA
89
A
ALA
90
n
110
ALA
90
A
ASN
91
n
111
ASN
91
A
TYR
92
n
112
TYR
92
A
PRO
93
n
113
PRO
93
A
ASP
94
n
114
ASP
94
A
SER
95
n
115
SER
95
A
VAL
96
n
116
VAL
96
A
ALA
97
n
117
ALA
97
A
SER
98
n
118
SER
98
A
VAL
99
n
119
VAL
99
A
THR
100
n
120
THR
100
A
SER
101
n
121
SER
101
A
ILE
102
n
122
ILE
102
A
ASN
103
n
123
ASN
103
A
GLY
104
n
124
GLY
104
A
VAL
105
n
125
VAL
105
A
ASN
106
n
126
ASN
106
A
HIS
107
n
127
HIS
107
A
GLY
108
n
128
GLY
108
A
SER
109
n
129
SER
109
A
GLU
110
n
130
GLU
110
A
ILE
111
n
131
ILE
111
A
ALA
112
n
132
ALA
112
A
ASP
113
n
133
ASP
113
A
LEU
114
n
134
LEU
114
A
TYR
115
n
135
TYR
115
A
ARG
116
n
136
ARG
116
A
ARG
117
n
137
ARG
117
A
ILE
118
n
138
ILE
118
A
MET
119
n
139
MET
119
A
ARG
120
n
140
ARG
120
A
LYS
121
n
141
LYS
121
A
ASP
122
n
142
ASP
122
A
SER
123
n
143
SER
123
A
ILE
124
n
144
ILE
124
A
PRO
125
n
145
PRO
125
A
GLU
126
n
146
GLU
126
A
TYR
127
n
147
TYR
127
A
ILE
128
n
148
ILE
128
A
VAL
129
n
149
VAL
129
A
GLU
130
n
150
GLU
130
A
LYS
131
n
151
LYS
131
A
VAL
132
n
152
VAL
132
A
LEU
133
n
153
LEU
133
A
ASN
134
n
154
ASN
134
A
ALA
135
n
155
ALA
135
A
PHE
136
n
156
PHE
136
A
GLY
137
n
157
GLY
137
A
THR
138
n
158
THR
138
A
ILE
139
n
159
ILE
139
A
ILE
140
n
160
ILE
140
A
SER
141
n
161
SER
141
A
THR
142
n
162
THR
142
A
PHE
143
n
163
PHE
143
A
SER
144
n
164
SER
144
A
GLY
145
n
165
GLY
145
A
HIS
146
n
166
HIS
146
A
ARG
147
n
167
ARG
147
A
GLY
148
n
168
GLY
148
A
n
169
149
A
n
170
150
A
GLN
151
n
171
GLN
151
A
ASP
152
n
172
ASP
152
A
ALA
153
n
173
ALA
153
A
ILE
154
n
174
ILE
154
A
ALA
155
n
175
ALA
155
A
ALA
156
n
176
ALA
156
A
LEU
157
n
177
LEU
157
A
GLU
158
n
178
GLU
158
A
SER
159
n
179
SER
159
A
LEU
160
n
180
LEU
160
A
THR
161
n
181
THR
161
A
THR
162
n
182
THR
162
A
GLU
163
n
183
GLU
163
A
GLN
164
n
184
GLN
164
A
VAL
165
n
185
VAL
165
A
THR
166
n
186
THR
166
A
GLU
167
n
187
GLU
167
A
PHE
168
n
188
PHE
168
A
ASN
169
n
189
ASN
169
A
ASN
170
n
190
ASN
170
A
LYS
171
n
191
LYS
171
A
TYR
172
n
192
TYR
172
A
PRO
173
n
193
PRO
173
A
GLN
174
n
194
GLN
174
A
ALA
175
n
195
ALA
175
A
LEU
176
n
196
LEU
176
A
PRO
177
n
197
PRO
177
A
LYS
178
n
198
LYS
178
A
THR
179
n
199
THR
179
A
PRO
180
n
200
PRO
180
A
GLY
181
n
201
GLY
181
A
GLY
182
n
202
GLY
182
A
GLU
183
n
203
GLU
183
A
GLY
184
n
204
GLY
184
A
ASP
185
n
205
ASP
185
A
GLU
186
n
206
GLU
186
A
ILE
187
n
207
ILE
187
A
VAL
188
n
208
VAL
188
A
ASN
189
n
209
ASN
189
A
GLY
190
n
210
GLY
190
A
VAL
191
n
211
VAL
191
A
HIS
192
n
212
HIS
192
A
TYR
193
n
213
TYR
193
A
TYR
194
n
214
TYR
194
A
CYS
195
n
215
CYS
195
A
PHE
196
n
216
PHE
196
A
GLY
197
n
217
GLY
197
A
SER
198
n
218
SER
198
A
TYR
199
n
219
TYR
199
A
ILE
200
n
220
ILE
200
A
GLN
201
n
221
GLN
201
A
GLY
202
n
222
GLY
202
A
LEU
203
n
223
LEU
203
A
ILE
204
n
224
ILE
204
A
ALA
205
n
225
ALA
205
A
GLY
206
n
226
GLY
206
A
GLU
207
n
227
GLU
207
A
LYS
208
n
228
LYS
208
A
GLY
209
n
229
GLY
209
A
ASN
210
n
230
ASN
210
A
LEU
211
n
231
LEU
211
A
LEU
212
n
232
LEU
212
A
ASP
213
n
233
ASP
213
A
PRO
214
n
234
PRO
214
A
THR
215
n
235
THR
215
A
HIS
216
n
236
HIS
216
A
ALA
217
n
237
ALA
217
A
ALA
218
n
238
ALA
218
A
MET
219
n
239
MET
219
A
ARG
220
n
240
ARG
220
A
VAL
221
n
241
VAL
221
A
LEU
222
n
242
LEU
222
A
ASN
223
n
243
ASN
223
A
THR
224
n
244
THR
224
A
PHE
225
n
245
PHE
225
A
PHE
226
n
246
PHE
226
A
THR
227
n
247
THR
227
A
GLU
228
n
248
GLU
228
A
LYS
229
n
249
LYS
229
A
GLN
230
n
250
GLN
230
A
ASN
231
n
251
ASN
231
A
ASP
232
n
252
ASP
232
A
GLY
233
n
253
GLY
233
A
LEU
234
n
254
LEU
234
A
VAL
235
n
255
VAL
235
A
GLY
236
n
256
GLY
236
A
ARG
237
n
257
ARG
237
A
SER
238
n
258
SER
238
A
SER
239
n
259
SER
239
A
MET
240
n
260
MET
240
A
ARG
241
n
261
ARG
241
A
LEU
242
n
262
LEU
242
A
GLY
243
n
263
GLY
243
A
LYS
244
n
264
LYS
244
A
LEU
245
n
265
LEU
245
A
ILE
246
n
266
ILE
246
A
LYS
247
n
267
LYS
247
A
ASP
248
n
268
ASP
248
A
ASP
249
n
269
ASP
249
A
TYR
250
n
270
TYR
250
A
ALA
251
n
271
ALA
251
A
GLN
252
n
272
GLN
252
A
ASP
253
n
273
ASP
253
A
HIS
254
n
274
HIS
254
A
ILE
255
n
275
ILE
255
A
ASP
256
n
276
ASP
256
A
MET
257
n
277
MET
257
A
VAL
258
n
278
VAL
258
A
ASN
259
n
279
ASN
259
A
GLN
260
n
280
GLN
260
A
VAL
261
n
281
VAL
261
A
ALA
262
n
282
ALA
262
A
GLY
263
n
283
GLY
263
A
LEU
264
n
284
LEU
264
A
VAL
265
n
285
VAL
265
A
GLY
266
n
286
GLY
266
A
TYR
267
n
287
TYR
267
A
ASN
268
n
288
ASN
268
A
GLU
269
n
289
GLU
269
A
ASP
270
n
290
ASP
270
A
ILE
271
n
291
ILE
271
A
VAL
272
n
292
VAL
272
A
ALA
273
n
293
ALA
273
A
ILE
274
n
294
ILE
274
A
TYR
275
n
295
TYR
275
A
THR
276
n
296
THR
276
A
GLN
277
n
297
GLN
277
A
HIS
278
n
298
HIS
278
A
ALA
279
n
299
ALA
279
A
LYS
280
n
300
LYS
280
A
TYR
281
n
301
TYR
281
A
LEU
282
n
302
LEU
282
A
ALA
283
n
303
ALA
283
A
SER
284
n
304
SER
284
A
LYS
285
n
305
LYS
285
A
GLN
286
n
306
GLN
286
A
LEU
287
n
307
LEU
287
A
2.8512
-0.6006
-1.0058
1.3992
0.4167
3.0733
-0.0511
-0.1358
0.0032
-0.0671
-0.1226
0.4764
0.1680
-0.2018
0.1736
0.0472
-0.0435
-0.0377
0.0990
-0.0463
0.1889
refined
1.3650
14.1550
-0.3730
X-RAY DIFFRACTION
4.8764
-1.4645
2.3597
3.4195
-1.3114
2.2552
-0.0140
0.1685
-0.0383
0.0568
-0.1670
0.1004
0.0339
-0.0503
0.1810
0.1213
-0.0077
-0.0055
0.0984
-0.0318
0.0541
refined
7.5710
8.2230
-3.4940
X-RAY DIFFRACTION
2.5543
-0.0810
1.9684
1.3764
0.4836
2.3853
-0.0012
0.1909
0.0414
-0.0979
-0.0320
0.0021
-0.0227
0.0114
0.0331
0.0986
-0.0149
0.0345
0.1058
0.0170
0.0366
refined
12.5750
10.3980
-7.2780
X-RAY DIFFRACTION
12.2233
-6.8090
3.4983
19.0885
-1.9791
33.0055
0.8868
-0.1509
-0.3760
0.1461
-0.8485
-0.7340
1.4524
-0.3263
-0.0383
0.2634
-0.0873
-0.0251
0.1035
0.0912
0.1304
refined
25.8950
1.8880
17.6730
X-RAY DIFFRACTION
7.0624
-6.7069
3.4005
6.5217
-3.2019
7.4462
0.8078
-0.4254
-0.6170
-0.4518
0.1324
0.5881
1.2602
-0.9710
-0.9402
0.9212
-0.7009
-0.1528
0.5525
0.1128
0.1227
refined
14.6000
7.4200
21.5310
X-RAY DIFFRACTION
4.1833
0.5614
-2.8831
1.9884
-1.8988
8.9710
-0.1259
0.0056
-0.3030
-0.0645
-0.0621
-0.2346
0.3657
0.2177
0.1880
0.1039
-0.0008
-0.0025
0.0991
0.0073
0.1410
refined
24.1480
6.3420
-0.4840
X-RAY DIFFRACTION
4.5658
1.7991
-0.1610
7.0889
0.9633
4.2772
-0.2187
0.3419
0.5230
-0.2290
-0.0249
-0.5026
-0.3089
0.4752
0.2436
0.1193
-0.0661
-0.0083
0.1671
0.1127
0.1851
refined
22.9510
20.6400
-9.0130
X-RAY DIFFRACTION
4.3480
0.4043
0.7903
1.9540
-0.9284
2.8306
-0.0222
-0.5571
0.4801
0.2591
-0.2217
0.1464
-0.1653
-0.1843
0.2439
0.1259
-0.0425
0.0159
0.1455
-0.1185
0.1016
refined
11.9390
23.7230
16.9140
X-RAY DIFFRACTION
2.0860
-0.6256
0.5193
2.0873
0.3008
2.9014
-0.1036
-0.0823
0.2821
0.1091
-0.0160
-0.2177
-0.2268
0.0751
0.1196
0.0904
-0.0512
-0.0317
0.0709
-0.0162
0.0908
refined
18.6210
21.8740
7.3680
X-RAY DIFFRACTION
2.6107
-0.1715
0.5339
1.5400
-0.3415
7.6056
-0.1428
-0.0474
0.8004
-0.1434
-0.0991
0.2300
-0.5034
-0.1240
0.2419
0.0927
0.0103
-0.0899
0.0751
-0.0414
0.3033
refined
6.1550
26.2480
-0.4220
X-RAY DIFFRACTION
A
2
A
33
X-RAY DIFFRACTION
1
A
34
A
55
X-RAY DIFFRACTION
2
A
56
A
114
X-RAY DIFFRACTION
3
A
115
A
123
X-RAY DIFFRACTION
4
A
124
A
154
X-RAY DIFFRACTION
5
A
155
A
175
X-RAY DIFFRACTION
6
A
176
A
195
X-RAY DIFFRACTION
7
A
196
A
223
X-RAY DIFFRACTION
8
A
224
A
259
X-RAY DIFFRACTION
9
A
260
A
287
X-RAY DIFFRACTION
10
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
256
A
OD1
ASP
276
1_555
A
CA
301
B
CA
CA
1_555
A
LEU
264
A
O
LEU
284
1_555
97.7
A
ASP
256
A
OD1
ASP
276
1_555
A
CA
301
B
CA
CA
1_555
A
ASP
213
A
OD2
ASP
233
1_555
168.1
A
LEU
264
A
O
LEU
284
1_555
A
CA
301
B
CA
CA
1_555
A
ASP
213
A
OD2
ASP
233
1_555
93.8
A
ASP
256
A
OD1
ASP
276
1_555
A
CA
301
B
CA
CA
1_555
A
ASN
210
A
OD1
ASN
230
1_555
86.9
A
LEU
264
A
O
LEU
284
1_555
A
CA
301
B
CA
CA
1_555
A
ASN
210
A
OD1
ASN
230
1_555
89.7
A
ASP
213
A
OD2
ASP
233
1_555
A
CA
301
B
CA
CA
1_555
A
ASN
210
A
OD1
ASN
230
1_555
96.0
A
ASP
256
A
OD1
ASP
276
1_555
A
CA
301
B
CA
CA
1_555
A
GLN
260
A
O
GLN
280
1_555
88.6
A
LEU
264
A
O
LEU
284
1_555
A
CA
301
B
CA
CA
1_555
A
GLN
260
A
O
GLN
280
1_555
77.1
A
ASP
213
A
OD2
ASP
233
1_555
A
CA
301
B
CA
CA
1_555
A
GLN
260
A
O
GLN
280
1_555
91.2
A
ASN
210
A
OD1
ASN
230
1_555
A
CA
301
B
CA
CA
1_555
A
GLN
260
A
O
GLN
280
1_555
165.3
A
ASP
256
A
OD1
ASP
276
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
411
E
O
HOH
1_555
91.8
A
LEU
264
A
O
LEU
284
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
411
E
O
HOH
1_555
170.4
A
ASP
213
A
OD2
ASP
233
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
411
E
O
HOH
1_555
76.6
A
ASN
210
A
OD1
ASN
230
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
411
E
O
HOH
1_555
91.4
A
GLN
260
A
O
GLN
280
1_555
A
CA
301
B
CA
CA
1_555
A
HOH
411
E
O
HOH
1_555
102.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
42
A
O
ALA
62
A
N
LEU
9
A
N
LEU
29
A
N
VAL
8
A
N
VAL
28
A
O
ASN
74
A
O
ASN
94
A
N
PHE
75
A
N
PHE
95
A
O
SER
98
A
O
SER
118
A
N
SER
101
A
N
SER
121
A
O
TYR
194
A
O
TYR
214
A
O
VAL
191
A
O
VAL
211
A
N
VAL
188
A
N
VAL
208
A
O
ALA
42
A
O
ALA
62
A
N
LEU
9
A
N
LEU
29
A
N
VAL
8
A
N
VAL
28
A
O
ASN
74
A
O
ASN
94
A
N
PHE
75
A
N
PHE
95
A
O
SER
98
A
O
SER
118
A
N
SER
101
A
N
SER
121
A
O
TYR
194
A
O
TYR
214
A
N
CYS
195
A
N
CYS
215
A
O
ILE
246
A
O
ILE
266
1
A
MET
-19
A
MET
1
1
Y
1
A
GLY
-18
A
GLY
2
1
Y
1
A
SER
-17
A
SER
3
1
Y
1
A
SER
-16
A
SER
4
1
Y
1
A
HIS
-15
A
HIS
5
1
Y
1
A
HIS
-14
A
HIS
6
1
Y
1
A
HIS
-13
A
HIS
7
1
Y
1
A
HIS
-12
A
HIS
8
1
Y
1
A
HIS
-11
A
HIS
9
1
Y
1
A
HIS
-10
A
HIS
10
1
Y
1
A
SER
-9
A
SER
11
1
Y
1
A
SER
-8
A
SER
12
1
Y
1
A
GLY
-7
A
GLY
13
1
Y
1
A
LEU
-6
A
LEU
14
1
Y
1
A
VAL
-5
A
VAL
15
1
Y
1
A
PRO
-4
A
PRO
16
1
Y
1
A
ARG
-3
A
ARG
17
1
Y
1
A
GLY
-2
A
GLY
18
1
Y
1
A
SER
-1
A
SER
19
1
Y
1
A
HIS
0
A
HIS
20
1
Y
1
A
MET
1
A
MET
21
1
Y
1
A
ASP
149
A
ASP
169
1
Y
1
A
PRO
150
A
PRO
170
1
Y
1
A
LEU
13
87.97
75.41
1
A
PHE
47
-96.28
51.41
1
A
SER
79
61.17
-117.14
1
A
LYS
208
52.02
-114.90
1
A
ILE
246
-95.28
-64.68
58.390
32.802
9.540
-0.0600
-0.0600
-0.0000
-0.0600
0.0000
0.1900
0.9330
0.8990
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY
0.2490
0.1954
0.1982
2.2000
32.7900
715
15495
13875
5.2000
89.5500
0.2453
0.1894
1.000
1.000
0.8367
12.8540
0.1750
0.3731
0.2471
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.3730
0.2470
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
2.2000
32.7900
175
2405
19
0
2211
0.005
0.019
2273
0.001
0.020
2144
0.872
1.948
3066
0.703
3.000
4914
5.101
5.000
282
35.826
24.815
108
12.073
15.000
365
15.574
15.000
9
0.053
0.200
337
0.003
0.020
2617
0.001
0.020
542
0.3500
0.2390
2.2570
53
863
916
20
82.0800
2.000
50.000
4GXN
20700
20659
-3
0.125
1.058
1
9.200
3.100
99.800
0.532
2.000
2.070
2078
1.088
1
3.100
99.900
0.414
2.070
2.150
2042
1.082
1
3.100
99.900
0.324
2.150
2.250
2082
1.100
1
3.100
100.000
0.262
2.250
2.370
2074
1.119
1
3.100
100.000
0.207
2.370
2.520
2066
1.033
1
3.100
99.900
0.174
2.520
2.710
2077
1.046
1
3.200
99.900
0.141
2.710
2.990
2070
1.027
1
3.200
99.900
0.109
2.990
3.420
2036
1.063
1
3.200
100.000
0.099
3.420
4.310
2077
0.997
1
3.200
99.900
0.087
4.310
50.000
2057
1.036
1
3.200
99.000
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
CrystalClear
data reduction
DENZO
Putative lipase (E.C.3.1.1.3)
Diethylphosphonate Inhibited Structure of the Proteus mirabilis Lipase
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
GLY
15
A
GLY
35
HELX_P
A
GLY
21
A
GLY
41
1
1
7
A
GLY
27
A
GLY
47
HELX_P
A
ASP
35
A
ASP
55
1
2
9
A
SER
49
A
SER
69
HELX_P
A
GLN
69
A
GLN
89
1
3
21
A
GLN
80
A
GLN
100
HELX_P
A
TYR
92
A
TYR
112
1
4
13
A
SER
109
A
SER
129
HELX_P
A
ARG
120
A
ARG
140
1
5
12
A
PRO
125
A
PRO
145
HELX_P
A
GLY
145
A
GLY
165
1
6
21
A
ALA
153
A
ALA
173
HELX_P
A
GLU
158
A
GLU
178
1
7
6
A
THR
161
A
THR
181
HELX_P
A
TYR
172
A
TYR
192
1
8
12
A
LEU
203
A
LEU
223
HELX_P
A
LEU
212
A
LEU
232
5
9
10
A
ASP
213
A
ASP
233
HELX_P
A
THR
224
A
THR
244
1
10
12
A
GLY
236
A
GLY
256
HELX_P
A
ARG
241
A
ARG
261
5
11
6
A
ILE
255
A
ILE
275
HELX_P
A
ASN
259
A
ASN
279
5
12
5
A
ASP
270
A
ASP
290
HELX_P
A
LYS
285
A
LYS
305
1
13
16
metalc
2.310
A
ASP
256
A
OD1
ASP
276
1_555
A
CA
301
B
CA
CA
1_555
metalc
2.313
A
LEU
264
A
O
LEU
284
1_555
A
CA
301
B
CA
CA
1_555
metalc
2.317
A
ASP
213
A
OD2
ASP
233
1_555
A
CA
301
B
CA
CA
1_555
metalc
2.328
A
ASN
210
A
OD1
ASN
230
1_555
A
CA
301
B
CA
CA
1_555
metalc
2.329
A
GLN
260
A
O
GLN
280
1_555
A
CA
301
B
CA
CA
1_555
covale
1.606
A
SER
79
A
OG
SER
99
1_555
A
DEP
302
C
P
DEP
1_555
metalc
2.403
A
CA
301
B
CA
CA
1_555
A
HOH
411
E
O
HOH
1_555
HYDROLASE/HYDROLASE INHIBITOR
lipase, hydrolase, a/b hydrolase fold, HYDROLASE-HYDROLASE INHIBITOR complex
A
GLN
260
A
GLN
280
1
A
VAL
261
A
VAL
281
2.18
B4EVM3_PROMH
UNP
1
1
B4EVM3
MSTKYPIVLVHGLAGFNEIVGFPYFYGIADALRQDGHQVFTASLSAFNSNEVRGKQLWQFVQTLLQETQAKKVNFIGHSQ
GPLACRYVAANYPDSVASVTSINGVNHGSEIADLYRRIMRKDSIPEYIVEKVLNAFGTIISTFSGHRGDPQDAIAALESL
TTEQVTEFNNKYPQALPKTPGGEGDEIVNGVHYYCFGSYIQGLIAGEKGNLLDPTHAAMRVLNTFFTEKQNDGLVGRSSM
RLGKLIKDDYAQDHIDMVNQVAGLVGYNEDIVAIYTQHAKYLASKQL
1
287
4GXN
1
287
B4EVM3
A
1
21
307
1
EXPRESSION TAG
MET
-19
4GXN
A
B4EVM3
UNP
1
1
EXPRESSION TAG
GLY
-18
4GXN
A
B4EVM3
UNP
2
1
EXPRESSION TAG
SER
-17
4GXN
A
B4EVM3
UNP
3
1
EXPRESSION TAG
SER
-16
4GXN
A
B4EVM3
UNP
4
1
EXPRESSION TAG
HIS
-15
4GXN
A
B4EVM3
UNP
5
1
EXPRESSION TAG
HIS
-14
4GXN
A
B4EVM3
UNP
6
1
EXPRESSION TAG
HIS
-13
4GXN
A
B4EVM3
UNP
7
1
EXPRESSION TAG
HIS
-12
4GXN
A
B4EVM3
UNP
8
1
EXPRESSION TAG
HIS
-11
4GXN
A
B4EVM3
UNP
9
1
EXPRESSION TAG
HIS
-10
4GXN
A
B4EVM3
UNP
10
1
EXPRESSION TAG
SER
-9
4GXN
A
B4EVM3
UNP
11
1
EXPRESSION TAG
SER
-8
4GXN
A
B4EVM3
UNP
12
1
EXPRESSION TAG
GLY
-7
4GXN
A
B4EVM3
UNP
13
1
EXPRESSION TAG
LEU
-6
4GXN
A
B4EVM3
UNP
14
1
EXPRESSION TAG
VAL
-5
4GXN
A
B4EVM3
UNP
15
1
EXPRESSION TAG
PRO
-4
4GXN
A
B4EVM3
UNP
16
1
EXPRESSION TAG
ARG
-3
4GXN
A
B4EVM3
UNP
17
1
EXPRESSION TAG
GLY
-2
4GXN
A
B4EVM3
UNP
18
1
EXPRESSION TAG
SER
-1
4GXN
A
B4EVM3
UNP
19
1
EXPRESSION TAG
HIS
0
4GXN
A
B4EVM3
UNP
20
6
6
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
parallel
A
VAL
39
A
VAL
59
A
LEU
44
A
LEU
64
A
ILE
7
A
ILE
27
A
GLY
12
A
GLY
32
A
VAL
73
A
VAL
93
A
SER
79
A
SER
99
A
VAL
96
A
VAL
116
A
GLY
104
A
GLY
124
A
VAL
191
A
VAL
211
A
SER
198
A
SER
218
A
ILE
187
A
ILE
207
A
VAL
188
A
VAL
208
A
VAL
39
A
VAL
59
A
LEU
44
A
LEU
64
A
ILE
7
A
ILE
27
A
GLY
12
A
GLY
32
A
VAL
73
A
VAL
93
A
SER
79
A
SER
99
A
VAL
96
A
VAL
116
A
GLY
104
A
GLY
124
A
VAL
191
A
VAL
211
A
SER
198
A
SER
218
A
LYS
244
A
LYS
264
A
TYR
250
A
TYR
270
BINDING SITE FOR RESIDUE CA A 301
Software
7
BINDING SITE FOR RESIDUE DEP A 302
Software
6
BINDING SITE FOR RESIDUE PGE A 303
Software
5
A
ASN
210
A
ASN
230
7
1_555
A
ASP
213
A
ASP
233
7
1_555
A
ASP
256
A
ASP
276
7
1_555
A
GLN
260
A
GLN
280
7
1_555
A
VAL
261
A
VAL
281
7
1_555
A
LEU
264
A
LEU
284
7
1_555
A
HOH
411
E
HOH
7
1_555
A
TYR
24
A
TYR
44
6
1_555
A
SER
79
A
SER
99
6
1_555
A
GLN
80
A
GLN
100
6
1_555
A
LEU
160
A
LEU
180
6
1_555
A
HIS
254
A
HIS
274
6
1_555
A
HOH
553
E
HOH
6
1_555
A
ILE
19
A
ILE
39
5
1_555
A
PHE
47
A
PHE
67
5
1_555
A
GLU
67
A
GLU
87
5
3_555
A
HOH
462
E
HOH
5
3_555
A
HOH
520
E
HOH
5
3_555
145
P 32