0.016053 0.009268 0.000000 0.000000 0.018536 0.000000 0.000000 0.000000 0.011898 0.00000 0.00000 0.00000 Dewdney, T.G. Wang, Y. Kovari, I.A. Brunzelle, J.S. Reiter, S.J. Kovari, L.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 62.294 62.294 84.049 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C15 H24 N2 O2 264.363 N-[(2S)-2-amino-4-methylpentyl]-L-phenylalanine peptide-like C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H13 N O2 131.173 n NORLEUCINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N C N 92 N C N 93 N C N 94 N C N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C Y 100 N C Y 101 N C Y 102 N C Y 103 N C Y 104 N C Y 105 N C N 106 N O N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 N C N 136 N C N 137 N C N 138 N O N 139 N N N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C N 156 N C N 157 N C N 158 N O N 159 N O N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 N C N 172 N C N 173 N O N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C Y 185 N C Y 186 N N Y 187 N C Y 188 N C Y 189 N N N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N O N 202 N H N 203 N H N 204 N N N 205 S C N 206 N C N 207 N O N 208 S C N 209 N C N 210 N C N 211 N C N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N C N 232 N C N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N C N 255 N C N 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N S N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N O N 298 N C N 299 N C N 300 N C N 301 N C N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C Y 320 N C Y 321 N C Y 322 N C Y 323 N C Y 324 N C Y 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C N 343 N C N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 R C N 360 N O N 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N N Y 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C N 386 N O N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C N 410 N O N 411 N O N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N N N 424 S C N 425 N C N 426 N O N 427 N C N 428 N C N 429 N C N 430 N O N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing Y 113 N doub Y 114 N sing Y 115 N sing N 116 N sing Y 117 N doub N 118 N sing Y 119 N doub N 120 N sing Y 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing Y 183 N sing Y 184 N doub Y 185 N doub N 186 N sing Y 187 N sing N 188 N sing Y 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N doub N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing Y 312 N doub Y 313 N sing Y 314 N sing N 315 N sing Y 316 N doub N 317 N sing Y 318 N doub N 319 N sing Y 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing Y 368 N doub Y 369 N sing Y 370 N sing N 371 N sing Y 372 N doub Y 373 N sing Y 374 N sing N 375 N sing Y 376 N sing Y 377 N doub N 378 N sing Y 379 N doub N 380 N sing Y 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N doub N 392 N sing N 393 N sing N 394 N sing N 395 N sing Y 396 N doub Y 397 N sing Y 398 N sing N 399 N sing Y 400 N doub N 401 N sing Y 402 N doub N 403 N sing Y 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing UK Bioorg.Med.Chem. BMECEP 1200 0968-0896 21 7430 7434 10.1016/j.bmc.2013.09.045 24128815 Ligand modifications to reduce the relative resistance of multi-drug resistant HIV-1 protease. 2013 10.2210/pdb4gzf/pdb pdb_00004gzf 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 CCD 2012-04-10 RAYONIX MX-300 KOHZU SINGLE WAVELENGTH M x-ray 1 0.979 1.0 21-ID-D APS 0.979 SYNCHROTRON APS BEAMLINE 21-ID-D 10770.686 Protease UNP RESIDUES 1-99 Q7K, D25N, M36V, A82T, I84V 2 man polymer 834.037 LrF peptide 1 syn polymer 18.015 water 146 nat water no no PQITLWKRPIVTIKIGGQLKEALLNTGADDTVLEEVNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPT PTNVIGRNLMTQIGCTLNF PQITLWKRPIVTIKIGGQLKEALLNTGADDTVLEEVNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPT PTNVIGRNLMTQIGCTLNF A,B polypeptide(L) no yes RV(DC0)EA(NLE) RVXEAL C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n The sequence is a clinical isolate with mutations introduced sample 1 99 pol 11676 Human immunodeficiency virus 1 562 Escherichia coli Biological sequence 1 2.10 41.54 VAPOR DIFFUSION, HANGING DROP 5.2 0.1 M citric acid and 2.4 M ammonium sulfate at pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 atom_site chem_comp database_2 entity entity_poly entity_poly_seq entity_src_gen pdbx_entity_src_syn pdbx_poly_seq_scheme pdbx_validate_rmsd_angle pdbx_validate_rmsd_bond struct_conn struct_ref struct_ref_seq struct_ref_seq_dif chem_comp_atom chem_comp_bond pdbx_initial_refinement_model atom_site chem_comp_atom chem_comp_bond pdbx_validate_main_chain_plane pdbx_validate_peptide_omega pdbx_validate_rmsd_angle repository Initial release Database references Atomic model Data collection Database references Derived calculations Non-polymer description Polymer sequence Source and taxonomy Structure summary Data collection Refinement description Atomic model Data collection 1 0 2013-10-30 1 1 2013-11-13 2 0 2023-02-22 2 1 2023-09-20 3 0 2023-11-15 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.group_PDB _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.type_symbol _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.formula_weight _entity.pdbx_ec _entity.pdbx_mutation _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly_seq.mon_id _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.pdbx_seq_type _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.pdb_mon_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref.db_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref_seq.pdbx_db_accession _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_seq_db_accession_code _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp_atom.atom_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 MDR HIV-1 Protease 769 with reduced P1F peptide RCSB Y RCSB 2012-09-06 REL REL HOH water 32630 synthetic construct sample 1 6 3SO9 PDB experimental model Inhibitor N-[(2S)-2-({N~5~-[(1E)-ethanimidoyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucine Peptide-like HOH 201 3 HOH HOH 201 A HOH 202 3 HOH HOH 202 A HOH 204 3 HOH HOH 203 A HOH 205 3 HOH HOH 204 A HOH 206 3 HOH HOH 205 A HOH 207 3 HOH HOH 206 A HOH 208 3 HOH HOH 207 A HOH 209 3 HOH HOH 208 A HOH 210 3 HOH HOH 209 A HOH 211 3 HOH HOH 210 A HOH 212 3 HOH HOH 211 A HOH 213 3 HOH HOH 212 A HOH 214 3 HOH HOH 213 A HOH 215 3 HOH HOH 214 A HOH 216 3 HOH HOH 215 A HOH 217 3 HOH HOH 216 A HOH 218 3 HOH HOH 217 A HOH 219 3 HOH HOH 218 A HOH 220 3 HOH HOH 219 A HOH 221 3 HOH HOH 220 A HOH 222 3 HOH HOH 221 A HOH 223 3 HOH HOH 222 A HOH 224 3 HOH HOH 223 A HOH 225 3 HOH HOH 224 A HOH 226 3 HOH HOH 225 A HOH 227 3 HOH HOH 226 A HOH 228 3 HOH HOH 227 A HOH 229 3 HOH HOH 228 A HOH 230 3 HOH HOH 229 A HOH 231 3 HOH HOH 230 A HOH 232 3 HOH HOH 231 A HOH 233 3 HOH HOH 232 A HOH 234 3 HOH HOH 233 A HOH 235 3 HOH HOH 234 A HOH 236 3 HOH HOH 235 A HOH 237 3 HOH HOH 236 A HOH 238 3 HOH HOH 237 A HOH 239 3 HOH HOH 238 A HOH 240 3 HOH HOH 239 A HOH 241 3 HOH HOH 240 A HOH 242 3 HOH HOH 241 A HOH 243 3 HOH HOH 242 A HOH 244 3 HOH HOH 243 A HOH 245 3 HOH HOH 244 A HOH 246 3 HOH HOH 245 A HOH 247 3 HOH HOH 246 A HOH 248 3 HOH HOH 247 A HOH 249 3 HOH HOH 248 A HOH 250 3 HOH HOH 249 A HOH 252 3 HOH HOH 250 A HOH 253 3 HOH HOH 251 A HOH 255 3 HOH HOH 252 A HOH 256 3 HOH HOH 253 A HOH 257 3 HOH HOH 254 A HOH 258 3 HOH HOH 255 A HOH 259 3 HOH HOH 256 A HOH 260 3 HOH HOH 257 A HOH 261 3 HOH HOH 258 A HOH 262 3 HOH HOH 259 A HOH 263 3 HOH HOH 260 A HOH 265 3 HOH HOH 261 A HOH 266 3 HOH HOH 262 A HOH 267 3 HOH HOH 263 A HOH 268 3 HOH HOH 264 A HOH 269 3 HOH HOH 265 A HOH 270 3 HOH HOH 266 A HOH 271 3 HOH HOH 267 A HOH 272 3 HOH HOH 268 A HOH 273 3 HOH HOH 269 A HOH 274 3 HOH HOH 270 A HOH 275 3 HOH HOH 271 A HOH 276 3 HOH HOH 272 A HOH 277 3 HOH HOH 273 A HOH 101 3 HOH HOH 274 A HOH 102 3 HOH HOH 101 B HOH 103 3 HOH HOH 102 B HOH 104 3 HOH HOH 103 B HOH 105 3 HOH HOH 104 B HOH 106 3 HOH HOH 105 B HOH 107 3 HOH HOH 106 B HOH 108 3 HOH HOH 107 B HOH 109 3 HOH HOH 108 B HOH 110 3 HOH HOH 109 B HOH 111 3 HOH HOH 110 B HOH 112 3 HOH HOH 111 B HOH 113 3 HOH HOH 112 B HOH 114 3 HOH HOH 113 B HOH 115 3 HOH HOH 114 B HOH 116 3 HOH HOH 115 B HOH 117 3 HOH HOH 116 B HOH 118 3 HOH HOH 117 B HOH 119 3 HOH HOH 118 B HOH 120 3 HOH HOH 119 B HOH 121 3 HOH HOH 120 B HOH 122 3 HOH HOH 121 B HOH 123 3 HOH HOH 122 B HOH 124 3 HOH HOH 123 B HOH 125 3 HOH HOH 124 B HOH 126 3 HOH HOH 125 B HOH 127 3 HOH HOH 126 B HOH 128 3 HOH HOH 127 B HOH 129 3 HOH HOH 128 B HOH 130 3 HOH HOH 129 B HOH 131 3 HOH HOH 130 B HOH 132 3 HOH HOH 131 B HOH 133 3 HOH HOH 132 B HOH 134 3 HOH HOH 133 B HOH 135 3 HOH HOH 134 B HOH 136 3 HOH HOH 135 B HOH 137 3 HOH HOH 136 B HOH 138 3 HOH HOH 137 B HOH 139 3 HOH HOH 138 B HOH 140 3 HOH HOH 139 B HOH 141 3 HOH HOH 140 B HOH 142 3 HOH HOH 141 B HOH 143 3 HOH HOH 142 B HOH 144 3 HOH HOH 143 B HOH 145 3 HOH HOH 144 B HOH 146 3 HOH HOH 145 B HOH 147 3 HOH HOH 146 B HOH 148 3 HOH HOH 147 B HOH 149 3 HOH HOH 148 B HOH 150 3 HOH HOH 149 B HOH 151 3 HOH HOH 150 B HOH 152 3 HOH HOH 151 B HOH 153 3 HOH HOH 152 B HOH 154 3 HOH HOH 153 B HOH 155 3 HOH HOH 154 B HOH 156 3 HOH HOH 155 B HOH 157 3 HOH HOH 156 B HOH 158 3 HOH HOH 157 B HOH 159 3 HOH HOH 158 B HOH 160 3 HOH HOH 159 B HOH 161 3 HOH HOH 160 B HOH 162 3 HOH HOH 161 B HOH 163 3 HOH HOH 162 B HOH 164 3 HOH HOH 163 B HOH 165 3 HOH HOH 164 B HOH 166 3 HOH HOH 165 B HOH 167 3 HOH HOH 166 B HOH 168 3 HOH HOH 167 B HOH 169 3 HOH HOH 168 B HOH 203 3 HOH HOH 101 C HOH 251 3 HOH HOH 102 C HOH 254 3 HOH HOH 103 C HOH 264 3 HOH HOH 104 C PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A ILE 10 n 10 ILE 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASN 25 n 25 ASN 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A VAL 36 n 36 VAL 36 A ASN 37 n 37 ASN 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A LEU 46 n 46 LEU 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A VAL 54 n 54 VAL 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A VAL 62 n 62 VAL 62 A PRO 63 n 63 PRO 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A VAL 71 n 71 VAL 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A THR 82 n 82 THR 82 A ASN 83 n 83 ASN 83 A VAL 84 n 84 VAL 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A MET 90 n 90 MET 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B LYS 7 n 7 LYS 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B ILE 10 n 10 ILE 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASN 25 n 25 ASN 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B LEU 33 n 33 LEU 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B VAL 36 n 36 VAL 36 B ASN 37 n 37 ASN 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B LEU 46 n 46 LEU 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B VAL 54 n 54 VAL 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B VAL 62 n 62 VAL 62 B PRO 63 n 63 PRO 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B VAL 71 n 71 VAL 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B THR 82 n 82 THR 82 B ASN 83 n 83 ASN 83 B VAL 84 n 84 VAL 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B MET 90 n 90 MET 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B ILO 1 n 1 ARG 1 C VAL 2 n 2 VAL 2 C DC0 3 n 3 DC0 3 C GLU 4 n 4 GLU 4 C ALA 5 n 5 ALA 5 C NLE 6 n 6 NLE 6 C author_and_software_defined_assembly PISA 3 trimeric 5360 -28 10100 C NLE 6 NORLEUCINE C NLE 6 LEU 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 97 B O LEU 97 B O THR 96 B O THR 96 A N ASN 98 A N ASN 98 A N LEU 97 A N LEU 97 B O ILE 3 B O ILE 3 A N LYS 45 A N LYS 45 A O VAL 56 A O VAL 56 A N VAL 62 A N VAL 62 A O GLY 73 A O GLY 73 A O LEU 76 A O LEU 76 A N LEU 33 A N LEU 33 A N VAL 32 A N VAL 32 A O VAL 84 A O VAL 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O GLN 18 A O GLN 18 A N ILE 15 A N ILE 15 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 B N LYS 45 B N LYS 45 B O VAL 56 B O VAL 56 B N ARG 57 B N ARG 57 B O VAL 77 B O VAL 77 B O LEU 76 B O LEU 76 B N LEU 33 B N LEU 33 B N VAL 32 B N VAL 32 B O VAL 84 B O VAL 84 B O ILE 85 B O ILE 85 B N LEU 23 B N LEU 23 B O ALA 22 B O ALA 22 B N VAL 11 B N VAL 11 B N LYS 14 B N LYS 14 B O GLU 65 B O GLU 65 1 A A O O HOH HOH 220 268 1.62 1 A A CB O THR HOH 12 251 1.80 1 A A O O HOH HOH 201 267 1.89 1 A A ND2 O ASN HOH 37 227 1.97 1 A A N O GLY HOH 51 274 2.00 1 B A O O ILE HOH 50 274 2.03 1 A A CB O GLU HOH 65 214 2.09 1 B B OE1 O GLU HOH 65 149 2.18 1 A A O O HOH HOH 248 254 2.18 1 C DC0 3 51.11 1 C C DC0 GLU 3 4 -85.84 1 -20.12 2.20 111.40 91.28 A A A CG1 CB CG2 ILE ILE ILE 72 72 72 N 1 -14.90 2.20 111.40 96.50 B B B CG1 CB CG2 ILE ILE ILE 72 72 72 N 1 4.02 0.50 120.30 124.32 C C C NE CZ NH2 ARG ARG ARG 1 1 1 N 1 32.44 2.20 117.20 149.64 C C C CA C N DC0 DC0 GLU 3 3 4 Y 1 C C CZ NH1 ARG ARG 1 1 0.187 0.013 1.326 1.513 N 1 C C CD OE1 GLU GLU 4 4 0.092 0.011 1.252 1.344 N 1 A B SG O CYS HOH 67 167 1.33 1_555 6_665 1 A B O O HOH HOH 204 135 1.79 1_555 6_665 1 B PRO 79 -65.62 86.94 20.649 0.77 0.38 0.00 0.77 0.00 -1.15 0.940 0.898 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.26319 0.19588 0.19924 2.05 42.02 555 11053 4.8 99.96 5.486 0.154 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.265 0.217 0.80 0.80 1.40 3SO9 MAXIMUM LIKELIHOOD MASK 2.05 42.02 146 1719 0 0 1573 0.022 0.022 1601 2.038 2.019 2173 7.403 5.000 196 43.421 24.815 54 17.215 15.000 276 19.646 15.000 8 0.144 0.200 261 0.011 0.021 1151 1.133 1.500 978 1.936 2.000 1600 3.169 3.000 623 5.152 4.500 573 0.292 0.205 2.106 40 827 20 99.88 2.053 42.02 4GZF 11642 1 2.05 2.16 1 97.7 data collection HKL-2000 refinement REFMAC 5.5.0109 Multi-drug resistant HIV-1 protease 769 variant with reduced LrF peptide 1 N N 1 N N 2 N N 3 N N 3 N N 3 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 B GLY 86 B GLY 86 HELX_P B THR 91 B THR 91 1 2 6 covale 1.327 both sing C ARG 1 C C ARG 1 1_555 C VAL 2 C N VAL 2 1_555 covale 1.344 both sing C VAL 2 C C VAL 2 1_555 C DC0 3 C N DC0 3 1_555 covale 1.351 both sing C DC0 3 C C DC0 3 1_555 C GLU 4 C N GLU 4 1_555 covale 1.360 both sing C ALA 5 C C ALA 5 1_555 C NLE 6 C N NLE 6 1_555 HYDROLASE/HYDROLASE INHIBITOR Multi-drug resistance, Protease inhibitor, Drug resistance, substrate peptides, HYDROLASE-HYDROLASE INHIBITOR complex Q5RTL1_9HIV1 UNP 1 1 Q5RTL1 PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPT PANIIGRNLMTQIGCTLNF 4GZF PDB 2 1 4GZF 1 99 4GZF 1 99 Q5RTL1 A 1 1 99 1 99 4GZF 1 99 Q5RTL1 B 1 1 99 1 6 4GZF 1 6 4GZF C 2 1 6 1 GLN engineered mutation LYS 7 4GZF A Q5RTL1 UNP 7 7 1 ASP engineered mutation ASN 25 4GZF A Q5RTL1 UNP 25 25 1 MET engineered mutation VAL 36 4GZF A Q5RTL1 UNP 36 36 1 ALA engineered mutation THR 82 4GZF A Q5RTL1 UNP 82 82 1 ILE engineered mutation VAL 84 4GZF A Q5RTL1 UNP 84 84 2 GLN engineered mutation LYS 7 4GZF B Q5RTL1 UNP 7 7 2 ASP engineered mutation ASN 25 4GZF B Q5RTL1 UNP 25 25 2 MET engineered mutation VAL 36 4GZF B Q5RTL1 UNP 36 36 2 ALA engineered mutation THR 82 4GZF B Q5RTL1 UNP 82 82 2 ILE engineered mutation VAL 84 4GZF B Q5RTL1 UNP 84 84 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B THR 4 B THR 4 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A LYS 70 A LYS 70 A VAL 77 A VAL 77 A VAL 32 A VAL 32 A LEU 33 A LEU 33 A VAL 84 A VAL 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A ILE 10 A ILE 10 A ILE 15 A ILE 15 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 43 B LYS 43 B GLY 49 B GLY 49 B GLY 52 B GLY 52 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B VAL 32 B VAL 32 B LEU 33 B LEU 33 B VAL 84 B VAL 84 B ILE 85 B ILE 85 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B ILE 10 B ILE 10 B ILE 15 B ILE 15 B GLY 52 B GLY 52 B ILE 66 B ILE 66 169 P 61