0.024888
0.000000
0.010050
0.000000
0.010267
0.000000
0.000000
0.000000
0.023604
0.00000
0.00000
0.00000
Stura, E.A.
Vera, L.
Cassar-Lajeunesse, E.
Nuti, E.
Catalani, M.P.
Dive, V.
Rossello, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
111.99
90.00
40.180
97.400
45.690
C54 H66 N8 O14 S2
1115.277
N,N'-bis(4-{[(3R)-3-[(biphenyl-4-ylsulfonyl)(propan-2-yloxy)amino]-4-(hydroxyamino)-4-oxobutyl]amino}-4-oxobutyl)benzene-1,3-dicarboxamide
non-polymer
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H13 N O4
163.172
BICINE
non-polymer
Ca 2
40.078
CALCIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
N
12
N
N
N
13
N
O
N
14
N
C
N
15
N
N
N
16
N
O
N
17
R
C
N
18
N
N
N
19
N
S
N
20
N
O
Y
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
C
Y
25
N
C
Y
26
N
C
Y
27
N
C
Y
28
N
C
Y
29
N
C
Y
30
N
C
Y
31
N
C
Y
32
N
C
N
33
N
O
N
34
N
O
N
35
N
C
N
36
N
C
N
37
N
C
N
38
N
C
N
39
N
C
N
40
N
N
N
41
N
C
N
42
N
O
N
43
N
C
N
44
N
C
N
45
N
C
N
46
N
N
N
47
N
C
N
48
N
O
Y
49
N
C
Y
50
N
C
Y
51
N
C
Y
52
N
C
Y
53
N
C
Y
54
N
C
N
55
N
C
N
56
N
O
N
57
N
N
N
58
N
C
N
59
N
C
N
60
N
C
N
61
N
C
N
62
N
O
N
63
N
N
N
64
N
C
N
65
N
C
N
66
R
C
N
67
N
C
N
68
N
O
N
69
N
N
N
70
N
O
N
71
N
O
N
72
N
C
N
73
N
C
N
74
N
C
N
75
N
S
N
76
N
O
N
77
N
O
Y
78
N
C
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
C
N
146
N
O
N
147
N
O
N
148
N
C
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
S
C
N
154
N
C
N
155
N
O
N
156
N
C
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
N
N
166
S
C
N
167
N
C
N
168
N
O
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
N
N
173
N
C
N
174
N
N
N
175
N
N
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
N
197
N
C
N
198
N
O
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
O
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
N
C
N
227
N
C
N
228
N
O
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
CA
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
N
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
O
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
N
N
290
N
C
N
291
N
C
N
292
N
O
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
Y
304
N
C
Y
305
N
N
Y
306
N
C
Y
307
N
C
Y
308
N
N
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
S
C
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
N
372
N
C
N
373
N
C
N
374
N
C
N
375
N
N
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
N
N
393
S
C
N
394
N
C
N
395
N
O
N
396
N
C
N
397
N
C
N
398
N
S
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
C
N
413
N
O
N
414
N
C
N
415
N
O
N
416
N
C
N
417
N
C
N
418
N
O
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
N
440
N
O
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
N
N
453
S
C
N
454
N
C
N
455
N
O
N
456
N
C
N
457
N
C
N
458
N
C
N
459
N
O
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
N
N
470
S
C
N
471
N
C
N
472
N
O
N
473
N
C
N
474
N
O
N
475
N
O
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
N
N
484
S
C
N
485
N
C
N
486
N
O
N
487
R
C
N
488
N
O
N
489
N
C
N
490
N
O
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
N
N
501
S
C
N
502
N
C
N
503
N
O
N
504
N
C
Y
505
N
C
Y
506
N
C
Y
507
N
C
Y
508
N
N
Y
509
N
C
Y
510
N
C
Y
511
N
C
Y
512
N
C
Y
513
N
C
N
514
N
O
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
N
N
528
S
C
N
529
N
C
N
530
N
O
N
531
N
C
Y
532
N
C
Y
533
N
C
Y
534
N
C
Y
535
N
C
Y
536
N
C
Y
537
N
C
N
538
N
O
N
539
N
O
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
N
N
552
S
C
N
553
N
C
N
554
N
O
N
555
N
C
N
556
N
C
N
557
N
C
N
558
N
O
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
ZN
Y
1
N
doub
Y
2
N
sing
Y
3
N
sing
Y
4
N
doub
Y
5
N
doub
Y
6
N
sing
N
7
N
sing
N
8
N
sing
Y
9
N
doub
Y
10
N
sing
Y
11
N
sing
N
12
N
doub
N
13
N
sing
Y
14
N
doub
Y
15
N
doub
N
16
N
doub
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
doub
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
Y
27
N
doub
Y
28
N
sing
Y
29
N
sing
Y
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
doub
Y
36
N
doub
Y
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
doub
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
doub
N
68
N
sing
N
69
N
sing
Y
70
N
doub
Y
71
N
sing
Y
72
N
sing
Y
73
N
doub
Y
74
N
doub
Y
75
N
sing
N
76
N
sing
Y
77
N
doub
Y
78
N
sing
Y
79
N
sing
Y
80
N
doub
Y
81
N
doub
Y
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
sing
Y
305
N
doub
Y
306
N
doub
N
307
N
sing
Y
308
N
sing
N
309
N
sing
Y
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
Y
428
N
doub
Y
429
N
sing
Y
430
N
sing
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
doub
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
doub
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
doub
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
Y
497
N
doub
Y
498
N
sing
Y
499
N
sing
N
500
N
sing
Y
501
N
doub
Y
502
N
sing
Y
503
N
sing
N
504
N
sing
Y
505
N
sing
Y
506
N
doub
N
507
N
sing
Y
508
N
doub
N
509
N
sing
Y
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
doub
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
Y
525
N
doub
Y
526
N
sing
Y
527
N
sing
N
528
N
sing
Y
529
N
doub
N
530
N
sing
Y
531
N
doub
N
532
N
sing
Y
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
doub
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
US
J.Struct.Biol.
JSBIEM
0803
1047-8477
182
246
254
10.1016/j.jsb.2013.03.015
23567804
Crystallization of bi-functional ligand protein complexes.
2013
10.2210/pdb4h2e/pdb
pdb_00004h2e
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2010-12-20
ADSC QUANTUM 315r
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.98011
1.0
PROXIMA 1
SOLEIL
0.98011
SYNCHROTRON
SOLEIL BEAMLINE PROXIMA 1
18338.318
Matrix metalloproteinase-9
3.4.24.35,3.4.24.35
unp residues 110-214 and 391-444
E402Q,E402Q
2
man
polymer
65.409
ZINC ION
4
syn
non-polymer
40.078
CALCIUM ION
5
syn
non-polymer
106.120
DI(HYDROXYETHYL)ETHER
9
syn
non-polymer
59.044
ACETATE ION
4
syn
non-polymer
163.172
BICINE
3
syn
non-polymer
1115.277
N,N'-bis(4-{[(3R)-3-[(biphenyl-4-ylsulfonyl)(propan-2-yloxy)amino]-4-(hydroxyamino)-4-oxobutyl]amino}-4-oxobutyl)benzene-1,3-dicarboxamide
1
syn
non-polymer
18.015
water
148
nat
water
MMP-9,92 kDa gelatinase,92 kDa type IV collagenase,Gelatinase B
no
no
GFQTFEGDLKWHHHNITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKD
GLLAHAFPPGPGIQGDAHFDDDELWSLGKGVGYSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGPPLHKDDVNGIR
HLYG
GFQTFEGDLKWHHHNITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKD
GLLAHAFPPGPGIQGDAHFDDDELWSLGKGVGYSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGPPLHKDDVNGIR
HLYG
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
111
MMP9, CLG4B
9606
Homo sapiens
469008
Escherichia coli
BL21 (DE3 star)
PT7 promoter
Biological sequence
pET-14b
Human
sample
112
164
MMP9, CLG4B
9606
Homo sapiens
469008
Escherichia coli
BL21 (DE3 star)
PT7 promoter
Biological sequence
pET-14b
1
2.26
45.58
VAPOR DIFFUSION, SITTING DROP
8.5
protein: hMMP-9-WT at 2 mg/mL with 120 milli-M acetohydroxamic acid. Reservoir: 40% monomethyl PEG 5,000, 0.1 M glycine. Cryoprotectant: 35% MPEG 5K, 15% PEG 400, 15% AAB buffer at pH 8.0
, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Database references
Structure summary
Database references
Structure summary
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-04-24
1
1
2013-05-01
1
2
2014-10-08
1
3
2015-08-12
1
4
2017-05-31
1
5
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of mutant MMP-9 catalytic domain in complex with a twin inhibitor.
MMP-9 active site mutant with trifluoromethyl hydroxamate inhibitor
RCSB
Y
RCSB
2012-09-12
REL
REL
1
B
O
HOH
461
6.41
ZN
ZINC ION
CA
CALCIUM ION
PEG
DI(HYDROXYETHYL)ETHER
ACT
ACETATE ION
BCN
BICINE
0Y3
N,N'-bis(4-{[(3R)-3-[(biphenyl-4-ylsulfonyl)(propan-2-yloxy)amino]-4-(hydroxyamino)-4-oxobutyl]amino}-4-oxobutyl)benzene-1,3-dicarboxamide
HOH
water
4H1Q
PDB
experimental model
ZN
500
2
ZN
ZN
301
A
ZN
501
2
ZN
ZN
302
A
CA
502
3
CA
CA
303
A
CA
503
3
CA
CA
304
A
PEG
4
4
PEG
PEG
305
A
PEG
5
4
PEG
PEG
306
A
PEG
6
4
PEG
PEG
307
A
PEG
7
4
PEG
PEG
308
A
PEG
8
4
PEG
PEG
309
A
PEG
9
4
PEG
PEG
310
A
ACT
10
5
ACT
ACT
311
A
ACT
11
5
ACT
ACT
312
A
ACT
12
5
ACT
ACT
313
A
BCN
20
6
BCN
BCN
314
A
BCN
21
6
BCN
BCN
315
A
ZN
500
2
ZN
ZN
301
B
ZN
501
2
ZN
ZN
302
B
CA
502
3
CA
CA
303
B
CA
503
3
CA
CA
304
B
CA
504
3
CA
CA
305
B
MPF
600
7
0Y3
0Y3
306
B
PEG
1
4
PEG
PEG
307
B
PEG
2
4
PEG
PEG
308
B
PEG
3
4
PEG
PEG
309
B
ACT
13
5
ACT
ACT
310
B
BCN
22
6
BCN
BCN
311
B
HOH
1
8
HOH
HOH
401
A
HOH
2
8
HOH
HOH
402
A
HOH
3
8
HOH
HOH
403
A
HOH
4
8
HOH
HOH
404
A
HOH
5
8
HOH
HOH
405
A
HOH
6
8
HOH
HOH
406
A
HOH
12
8
HOH
HOH
407
A
HOH
18
8
HOH
HOH
408
A
HOH
22
8
HOH
HOH
409
A
HOH
23
8
HOH
HOH
410
A
HOH
24
8
HOH
HOH
411
A
HOH
26
8
HOH
HOH
412
A
HOH
27
8
HOH
HOH
413
A
HOH
28
8
HOH
HOH
414
A
HOH
29
8
HOH
HOH
415
A
HOH
30
8
HOH
HOH
416
A
HOH
31
8
HOH
HOH
417
A
HOH
37
8
HOH
HOH
418
A
HOH
39
8
HOH
HOH
419
A
HOH
48
8
HOH
HOH
420
A
HOH
49
8
HOH
HOH
421
A
HOH
50
8
HOH
HOH
422
A
HOH
51
8
HOH
HOH
423
A
HOH
52
8
HOH
HOH
424
A
HOH
53
8
HOH
HOH
425
A
HOH
54
8
HOH
HOH
426
A
HOH
55
8
HOH
HOH
427
A
HOH
57
8
HOH
HOH
428
A
HOH
61
8
HOH
HOH
429
A
HOH
62
8
HOH
HOH
430
A
HOH
65
8
HOH
HOH
431
A
HOH
66
8
HOH
HOH
432
A
HOH
67
8
HOH
HOH
433
A
HOH
69
8
HOH
HOH
434
A
HOH
70
8
HOH
HOH
435
A
HOH
72
8
HOH
HOH
436
A
HOH
73
8
HOH
HOH
437
A
HOH
77
8
HOH
HOH
438
A
HOH
78
8
HOH
HOH
439
A
HOH
80
8
HOH
HOH
440
A
HOH
82
8
HOH
HOH
441
A
HOH
87
8
HOH
HOH
442
A
HOH
89
8
HOH
HOH
443
A
HOH
90
8
HOH
HOH
444
A
HOH
91
8
HOH
HOH
445
A
HOH
92
8
HOH
HOH
446
A
HOH
93
8
HOH
HOH
447
A
HOH
94
8
HOH
HOH
448
A
HOH
95
8
HOH
HOH
449
A
HOH
96
8
HOH
HOH
450
A
HOH
97
8
HOH
HOH
451
A
HOH
98
8
HOH
HOH
452
A
HOH
99
8
HOH
HOH
453
A
HOH
100
8
HOH
HOH
454
A
HOH
101
8
HOH
HOH
455
A
HOH
102
8
HOH
HOH
456
A
HOH
109
8
HOH
HOH
457
A
HOH
110
8
HOH
HOH
458
A
HOH
111
8
HOH
HOH
459
A
HOH
112
8
HOH
HOH
460
A
HOH
116
8
HOH
HOH
461
A
HOH
117
8
HOH
HOH
462
A
HOH
121
8
HOH
HOH
463
A
HOH
122
8
HOH
HOH
464
A
HOH
123
8
HOH
HOH
465
A
HOH
124
8
HOH
HOH
466
A
HOH
127
8
HOH
HOH
467
A
HOH
130
8
HOH
HOH
468
A
HOH
132
8
HOH
HOH
469
A
HOH
133
8
HOH
HOH
470
A
HOH
135
8
HOH
HOH
471
A
HOH
136
8
HOH
HOH
472
A
HOH
137
8
HOH
HOH
473
A
HOH
138
8
HOH
HOH
474
A
HOH
139
8
HOH
HOH
475
A
HOH
141
8
HOH
HOH
476
A
HOH
142
8
HOH
HOH
477
A
HOH
144
8
HOH
HOH
478
A
HOH
145
8
HOH
HOH
479
A
HOH
146
8
HOH
HOH
480
A
HOH
147
8
HOH
HOH
481
A
HOH
148
8
HOH
HOH
482
A
HOH
149
8
HOH
HOH
483
A
HOH
150
8
HOH
HOH
484
A
HOH
7
8
HOH
HOH
401
B
HOH
8
8
HOH
HOH
402
B
HOH
9
8
HOH
HOH
403
B
HOH
10
8
HOH
HOH
404
B
HOH
11
8
HOH
HOH
405
B
HOH
13
8
HOH
HOH
406
B
HOH
14
8
HOH
HOH
407
B
HOH
15
8
HOH
HOH
408
B
HOH
16
8
HOH
HOH
409
B
HOH
17
8
HOH
HOH
410
B
HOH
21
8
HOH
HOH
411
B
HOH
25
8
HOH
HOH
412
B
HOH
32
8
HOH
HOH
413
B
HOH
33
8
HOH
HOH
414
B
HOH
34
8
HOH
HOH
415
B
HOH
35
8
HOH
HOH
416
B
HOH
36
8
HOH
HOH
417
B
HOH
38
8
HOH
HOH
418
B
HOH
40
8
HOH
HOH
419
B
HOH
41
8
HOH
HOH
420
B
HOH
42
8
HOH
HOH
421
B
HOH
43
8
HOH
HOH
422
B
HOH
44
8
HOH
HOH
423
B
HOH
45
8
HOH
HOH
424
B
HOH
46
8
HOH
HOH
425
B
HOH
47
8
HOH
HOH
426
B
HOH
56
8
HOH
HOH
427
B
HOH
58
8
HOH
HOH
428
B
HOH
59
8
HOH
HOH
429
B
HOH
60
8
HOH
HOH
430
B
HOH
64
8
HOH
HOH
431
B
HOH
68
8
HOH
HOH
432
B
HOH
71
8
HOH
HOH
433
B
HOH
74
8
HOH
HOH
434
B
HOH
75
8
HOH
HOH
435
B
HOH
76
8
HOH
HOH
436
B
HOH
79
8
HOH
HOH
437
B
HOH
81
8
HOH
HOH
438
B
HOH
83
8
HOH
HOH
439
B
HOH
85
8
HOH
HOH
440
B
HOH
86
8
HOH
HOH
441
B
HOH
88
8
HOH
HOH
442
B
HOH
103
8
HOH
HOH
443
B
HOH
104
8
HOH
HOH
444
B
HOH
105
8
HOH
HOH
445
B
HOH
106
8
HOH
HOH
446
B
HOH
107
8
HOH
HOH
447
B
HOH
108
8
HOH
HOH
448
B
HOH
113
8
HOH
HOH
449
B
HOH
114
8
HOH
HOH
450
B
HOH
115
8
HOH
HOH
451
B
HOH
118
8
HOH
HOH
452
B
HOH
119
8
HOH
HOH
453
B
HOH
120
8
HOH
HOH
454
B
HOH
125
8
HOH
HOH
455
B
HOH
126
8
HOH
HOH
456
B
HOH
128
8
HOH
HOH
457
B
HOH
129
8
HOH
HOH
458
B
HOH
131
8
HOH
HOH
459
B
HOH
134
8
HOH
HOH
460
B
HOH
140
8
HOH
HOH
461
B
HOH
143
8
HOH
HOH
462
B
HOH
151
8
HOH
HOH
463
B
HOH
152
8
HOH
HOH
464
B
GLY
106
n
1
GLY
106
A
PHE
107
n
2
PHE
107
A
GLN
108
n
3
GLN
108
A
THR
109
n
4
THR
109
A
PHE
110
n
5
PHE
110
A
GLU
111
n
6
GLU
111
A
GLY
112
n
7
GLY
112
A
ASP
113
n
8
ASP
113
A
LEU
114
n
9
LEU
114
A
LYS
115
n
10
LYS
115
A
TRP
116
n
11
TRP
116
A
HIS
117
n
12
HIS
117
A
HIS
118
n
13
HIS
118
A
HIS
119
n
14
HIS
119
A
ASN
120
n
15
ASN
120
A
ILE
121
n
16
ILE
121
A
THR
122
n
17
THR
122
A
TYR
123
n
18
TYR
123
A
TRP
124
n
19
TRP
124
A
ILE
125
n
20
ILE
125
A
GLN
126
n
21
GLN
126
A
ASN
127
n
22
ASN
127
A
TYR
128
n
23
TYR
128
A
SER
129
n
24
SER
129
A
GLU
130
n
25
GLU
130
A
ASP
131
n
26
ASP
131
A
LEU
132
n
27
LEU
132
A
PRO
133
n
28
PRO
133
A
ARG
134
n
29
ARG
134
A
ALA
135
n
30
ALA
135
A
VAL
136
n
31
VAL
136
A
ILE
137
n
32
ILE
137
A
ASP
138
n
33
ASP
138
A
ASP
139
n
34
ASP
139
A
ALA
140
n
35
ALA
140
A
PHE
141
n
36
PHE
141
A
ALA
142
n
37
ALA
142
A
ARG
143
n
38
ARG
143
A
ALA
144
n
39
ALA
144
A
PHE
145
n
40
PHE
145
A
ALA
146
n
41
ALA
146
A
LEU
147
n
42
LEU
147
A
TRP
148
n
43
TRP
148
A
SER
149
n
44
SER
149
A
ALA
150
n
45
ALA
150
A
VAL
151
n
46
VAL
151
A
THR
152
n
47
THR
152
A
PRO
153
n
48
PRO
153
A
LEU
154
n
49
LEU
154
A
THR
155
n
50
THR
155
A
PHE
156
n
51
PHE
156
A
THR
157
n
52
THR
157
A
ARG
158
n
53
ARG
158
A
VAL
159
n
54
VAL
159
A
TYR
160
n
55
TYR
160
A
SER
161
n
56
SER
161
A
ARG
162
n
57
ARG
162
A
ASP
163
n
58
ASP
163
A
ALA
164
n
59
ALA
164
A
ASP
165
n
60
ASP
165
A
ILE
166
n
61
ILE
166
A
VAL
167
n
62
VAL
167
A
ILE
168
n
63
ILE
168
A
GLN
169
n
64
GLN
169
A
PHE
170
n
65
PHE
170
A
GLY
171
n
66
GLY
171
A
VAL
172
n
67
VAL
172
A
ALA
173
n
68
ALA
173
A
GLU
174
n
69
GLU
174
A
HIS
175
n
70
HIS
175
A
GLY
176
n
71
GLY
176
A
ASP
177
n
72
ASP
177
A
GLY
178
n
73
GLY
178
A
TYR
179
n
74
TYR
179
A
PRO
180
n
75
PRO
180
A
PHE
181
n
76
PHE
181
A
ASP
182
n
77
ASP
182
A
GLY
183
n
78
GLY
183
A
LYS
184
n
79
LYS
184
A
ASP
185
n
80
ASP
185
A
GLY
186
n
81
GLY
186
A
LEU
187
n
82
LEU
187
A
LEU
188
n
83
LEU
188
A
ALA
189
n
84
ALA
189
A
HIS
190
n
85
HIS
190
A
ALA
191
n
86
ALA
191
A
PHE
192
n
87
PHE
192
A
PRO
193
n
88
PRO
193
A
PRO
194
n
89
PRO
194
A
GLY
195
n
90
GLY
195
A
PRO
196
n
91
PRO
196
A
GLY
197
n
92
GLY
197
A
ILE
198
n
93
ILE
198
A
GLN
199
n
94
GLN
199
A
GLY
200
n
95
GLY
200
A
ASP
201
n
96
ASP
201
A
ALA
202
n
97
ALA
202
A
HIS
203
n
98
HIS
203
A
PHE
204
n
99
PHE
204
A
ASP
205
n
100
ASP
205
A
ASP
206
n
101
ASP
206
A
ASP
207
n
102
ASP
207
A
GLU
208
n
103
GLU
208
A
LEU
209
n
104
LEU
209
A
TRP
210
n
105
TRP
210
A
SER
211
n
106
SER
211
A
LEU
212
n
107
LEU
212
A
GLY
213
n
108
GLY
213
A
LYS
214
n
109
LYS
214
A
GLY
215
n
110
GLY
215
A
VAL
216
n
111
VAL
216
A
GLY
217
n
112
GLY
217
A
TYR
218
n
113
TYR
218
A
SER
219
n
114
SER
219
A
LEU
220
n
115
LEU
220
A
PHE
221
n
116
PHE
221
A
LEU
222
n
117
LEU
222
A
VAL
223
n
118
VAL
223
A
ALA
224
n
119
ALA
224
A
ALA
225
n
120
ALA
225
A
HIS
226
n
121
HIS
226
A
GLU
227
n
122
GLU
227
A
PHE
228
n
123
PHE
228
A
GLY
229
n
124
GLY
229
A
HIS
230
n
125
HIS
230
A
ALA
231
n
126
ALA
231
A
LEU
232
n
127
LEU
232
A
GLY
233
n
128
GLY
233
A
LEU
234
n
129
LEU
234
A
ASP
235
n
130
ASP
235
A
HIS
236
n
131
HIS
236
A
SER
237
n
132
SER
237
A
SER
238
n
133
SER
238
A
VAL
239
n
134
VAL
239
A
PRO
240
n
135
PRO
240
A
GLU
241
n
136
GLU
241
A
ALA
242
n
137
ALA
242
A
LEU
243
n
138
LEU
243
A
MET
244
n
139
MET
244
A
TYR
245
n
140
TYR
245
A
PRO
246
n
141
PRO
246
A
MET
247
n
142
MET
247
A
TYR
248
n
143
TYR
248
A
ARG
249
n
144
ARG
249
A
PHE
250
n
145
PHE
250
A
THR
251
n
146
THR
251
A
GLU
252
n
147
GLU
252
A
GLY
253
n
148
GLY
253
A
PRO
254
n
149
PRO
254
A
PRO
255
n
150
PRO
255
A
LEU
256
n
151
LEU
256
A
HIS
257
n
152
HIS
257
A
LYS
258
n
153
LYS
258
A
ASP
259
n
154
ASP
259
A
ASP
260
n
155
ASP
260
A
VAL
261
n
156
VAL
261
A
ASN
262
n
157
ASN
262
A
GLY
263
n
158
GLY
263
A
ILE
264
n
159
ILE
264
A
ARG
265
n
160
ARG
265
A
HIS
266
n
161
HIS
266
A
LEU
267
n
162
LEU
267
A
TYR
268
n
163
TYR
268
A
GLY
269
n
164
GLY
269
A
GLY
106
n
1
GLY
106
B
PHE
107
n
2
PHE
107
B
GLN
108
n
3
GLN
108
B
THR
109
n
4
THR
109
B
PHE
110
n
5
PHE
110
B
GLU
111
n
6
GLU
111
B
GLY
112
n
7
GLY
112
B
ASP
113
n
8
ASP
113
B
LEU
114
n
9
LEU
114
B
LYS
115
n
10
LYS
115
B
TRP
116
n
11
TRP
116
B
HIS
117
n
12
HIS
117
B
HIS
118
n
13
HIS
118
B
HIS
119
n
14
HIS
119
B
ASN
120
n
15
ASN
120
B
ILE
121
n
16
ILE
121
B
THR
122
n
17
THR
122
B
TYR
123
n
18
TYR
123
B
TRP
124
n
19
TRP
124
B
ILE
125
n
20
ILE
125
B
GLN
126
n
21
GLN
126
B
ASN
127
n
22
ASN
127
B
TYR
128
n
23
TYR
128
B
SER
129
n
24
SER
129
B
GLU
130
n
25
GLU
130
B
ASP
131
n
26
ASP
131
B
LEU
132
n
27
LEU
132
B
PRO
133
n
28
PRO
133
B
ARG
134
n
29
ARG
134
B
ALA
135
n
30
ALA
135
B
VAL
136
n
31
VAL
136
B
ILE
137
n
32
ILE
137
B
ASP
138
n
33
ASP
138
B
ASP
139
n
34
ASP
139
B
ALA
140
n
35
ALA
140
B
PHE
141
n
36
PHE
141
B
ALA
142
n
37
ALA
142
B
ARG
143
n
38
ARG
143
B
ALA
144
n
39
ALA
144
B
PHE
145
n
40
PHE
145
B
ALA
146
n
41
ALA
146
B
LEU
147
n
42
LEU
147
B
TRP
148
n
43
TRP
148
B
SER
149
n
44
SER
149
B
ALA
150
n
45
ALA
150
B
VAL
151
n
46
VAL
151
B
THR
152
n
47
THR
152
B
PRO
153
n
48
PRO
153
B
LEU
154
n
49
LEU
154
B
THR
155
n
50
THR
155
B
PHE
156
n
51
PHE
156
B
THR
157
n
52
THR
157
B
ARG
158
n
53
ARG
158
B
VAL
159
n
54
VAL
159
B
TYR
160
n
55
TYR
160
B
SER
161
n
56
SER
161
B
ARG
162
n
57
ARG
162
B
ASP
163
n
58
ASP
163
B
ALA
164
n
59
ALA
164
B
ASP
165
n
60
ASP
165
B
ILE
166
n
61
ILE
166
B
VAL
167
n
62
VAL
167
B
ILE
168
n
63
ILE
168
B
GLN
169
n
64
GLN
169
B
PHE
170
n
65
PHE
170
B
GLY
171
n
66
GLY
171
B
VAL
172
n
67
VAL
172
B
ALA
173
n
68
ALA
173
B
GLU
174
n
69
GLU
174
B
HIS
175
n
70
HIS
175
B
GLY
176
n
71
GLY
176
B
ASP
177
n
72
ASP
177
B
GLY
178
n
73
GLY
178
B
TYR
179
n
74
TYR
179
B
PRO
180
n
75
PRO
180
B
PHE
181
n
76
PHE
181
B
ASP
182
n
77
ASP
182
B
GLY
183
n
78
GLY
183
B
LYS
184
n
79
LYS
184
B
ASP
185
n
80
ASP
185
B
GLY
186
n
81
GLY
186
B
LEU
187
n
82
LEU
187
B
LEU
188
n
83
LEU
188
B
ALA
189
n
84
ALA
189
B
HIS
190
n
85
HIS
190
B
ALA
191
n
86
ALA
191
B
PHE
192
n
87
PHE
192
B
PRO
193
n
88
PRO
193
B
PRO
194
n
89
PRO
194
B
GLY
195
n
90
GLY
195
B
PRO
196
n
91
PRO
196
B
GLY
197
n
92
GLY
197
B
ILE
198
n
93
ILE
198
B
GLN
199
n
94
GLN
199
B
GLY
200
n
95
GLY
200
B
ASP
201
n
96
ASP
201
B
ALA
202
n
97
ALA
202
B
HIS
203
n
98
HIS
203
B
PHE
204
n
99
PHE
204
B
ASP
205
n
100
ASP
205
B
ASP
206
n
101
ASP
206
B
ASP
207
n
102
ASP
207
B
GLU
208
n
103
GLU
208
B
LEU
209
n
104
LEU
209
B
TRP
210
n
105
TRP
210
B
SER
211
n
106
SER
211
B
LEU
212
n
107
LEU
212
B
GLY
213
n
108
GLY
213
B
LYS
214
n
109
LYS
214
B
GLY
215
n
110
GLY
215
B
VAL
216
n
111
VAL
216
B
GLY
217
n
112
GLY
217
B
TYR
218
n
113
TYR
218
B
SER
219
n
114
SER
219
B
LEU
220
n
115
LEU
220
B
PHE
221
n
116
PHE
221
B
LEU
222
n
117
LEU
222
B
VAL
223
n
118
VAL
223
B
ALA
224
n
119
ALA
224
B
ALA
225
n
120
ALA
225
B
HIS
226
n
121
HIS
226
B
GLU
227
n
122
GLU
227
B
PHE
228
n
123
PHE
228
B
GLY
229
n
124
GLY
229
B
HIS
230
n
125
HIS
230
B
ALA
231
n
126
ALA
231
B
LEU
232
n
127
LEU
232
B
GLY
233
n
128
GLY
233
B
LEU
234
n
129
LEU
234
B
ASP
235
n
130
ASP
235
B
HIS
236
n
131
HIS
236
B
SER
237
n
132
SER
237
B
SER
238
n
133
SER
238
B
VAL
239
n
134
VAL
239
B
PRO
240
n
135
PRO
240
B
GLU
241
n
136
GLU
241
B
ALA
242
n
137
ALA
242
B
LEU
243
n
138
LEU
243
B
MET
244
n
139
MET
244
B
TYR
245
n
140
TYR
245
B
PRO
246
n
141
PRO
246
B
MET
247
n
142
MET
247
B
TYR
248
n
143
TYR
248
B
ARG
249
n
144
ARG
249
B
PHE
250
n
145
PHE
250
B
THR
251
n
146
THR
251
B
GLU
252
n
147
GLU
252
B
GLY
253
n
148
GLY
253
B
PRO
254
n
149
PRO
254
B
PRO
255
n
150
PRO
255
B
LEU
256
n
151
LEU
256
B
HIS
257
n
152
HIS
257
B
LYS
258
n
153
LYS
258
B
ASP
259
n
154
ASP
259
B
ASP
260
n
155
ASP
260
B
VAL
261
n
156
VAL
261
B
ASN
262
n
157
ASN
262
B
GLY
263
n
158
GLY
263
B
ILE
264
n
159
ILE
264
B
ARG
265
n
160
ARG
265
B
HIS
266
n
161
HIS
266
B
LEU
267
n
162
LEU
267
B
TYR
268
n
163
TYR
268
B
GLY
269
n
164
GLY
269
B
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
165
A
O
ASP
60
1_555
A
CA
303
E
CA
CA
1_555
A
GLY
197
A
O
GLY
92
1_555
163.9
A
ASP
165
A
O
ASP
60
1_555
A
CA
303
E
CA
CA
1_555
A
GLN
199
A
O
GLN
94
1_555
95.8
A
GLY
197
A
O
GLY
92
1_555
A
CA
303
E
CA
CA
1_555
A
GLN
199
A
O
GLN
94
1_555
88.3
A
ASP
165
A
O
ASP
60
1_555
A
CA
303
E
CA
CA
1_555
A
ASP
201
A
OD1
ASP
96
1_555
82.9
A
GLY
197
A
O
GLY
92
1_555
A
CA
303
E
CA
CA
1_555
A
ASP
201
A
OD1
ASP
96
1_555
81.7
A
GLN
199
A
O
GLN
94
1_555
A
CA
303
E
CA
CA
1_555
A
ASP
201
A
OD1
ASP
96
1_555
87.0
A
HIS
175
A
NE2
HIS
70
1_555
A
ZN
302
D
ZN
ZN
1_555
A
ASP
177
A
OD1
ASP
72
1_555
139.7
A
HIS
175
A
NE2
HIS
70
1_555
A
ZN
302
D
ZN
ZN
1_555
A
HIS
190
A
NE2
HIS
85
1_555
120.5
A
ASP
177
A
OD1
ASP
72
1_555
A
ZN
302
D
ZN
ZN
1_555
A
HIS
190
A
NE2
HIS
85
1_555
87.8
A
HIS
175
A
NE2
HIS
70
1_555
A
ZN
302
D
ZN
ZN
1_555
A
HIS
203
A
ND1
HIS
98
1_555
108.7
A
ASP
177
A
OD1
ASP
72
1_555
A
ZN
302
D
ZN
ZN
1_555
A
HIS
203
A
ND1
HIS
98
1_555
88.7
A
HIS
190
A
NE2
HIS
85
1_555
A
ZN
302
D
ZN
ZN
1_555
A
HIS
203
A
ND1
HIS
98
1_555
104.4
A
ASP
182
A
OD2
ASP
77
1_555
A
CA
304
F
CA
CA
1_555
A
GLY
183
A
O
GLY
78
1_555
109.2
A
ASP
182
A
OD2
ASP
77
1_555
A
CA
304
F
CA
CA
1_555
A
ASP
185
A
O
ASP
80
1_555
83.9
A
GLY
183
A
O
GLY
78
1_555
A
CA
304
F
CA
CA
1_555
A
ASP
185
A
O
ASP
80
1_555
87.4
A
ASP
182
A
OD2
ASP
77
1_555
A
CA
304
F
CA
CA
1_555
A
LEU
187
A
O
LEU
82
1_555
73.5
A
GLY
183
A
O
GLY
78
1_555
A
CA
304
F
CA
CA
1_555
A
LEU
187
A
O
LEU
82
1_555
169.2
A
ASP
185
A
O
ASP
80
1_555
A
CA
304
F
CA
CA
1_555
A
LEU
187
A
O
LEU
82
1_555
82.5
A
ASP
182
A
OD2
ASP
77
1_555
A
CA
304
F
CA
CA
1_555
A
ASP
205
A
OD2
ASP
100
1_555
112.4
A
GLY
183
A
O
GLY
78
1_555
A
CA
304
F
CA
CA
1_555
A
ASP
205
A
OD2
ASP
100
1_555
84.6
A
ASP
185
A
O
ASP
80
1_555
A
CA
304
F
CA
CA
1_555
A
ASP
205
A
OD2
ASP
100
1_555
163.5
A
LEU
187
A
O
LEU
82
1_555
A
CA
304
F
CA
CA
1_555
A
ASP
205
A
OD2
ASP
100
1_555
104.3
A
ASP
182
A
OD2
ASP
77
1_555
A
CA
304
F
CA
CA
1_555
A
GLU
208
A
OE2
GLU
103
1_555
167.7
A
GLY
183
A
O
GLY
78
1_555
A
CA
304
F
CA
CA
1_555
A
GLU
208
A
OE2
GLU
103
1_555
76.0
A
ASP
185
A
O
ASP
80
1_555
A
CA
304
F
CA
CA
1_555
A
GLU
208
A
OE2
GLU
103
1_555
85.3
A
LEU
187
A
O
LEU
82
1_555
A
CA
304
F
CA
CA
1_555
A
GLU
208
A
OE2
GLU
103
1_555
99.4
A
ASP
205
A
OD2
ASP
100
1_555
A
CA
304
F
CA
CA
1_555
A
GLU
208
A
OE2
GLU
103
1_555
78.8
A
HIS
226
A
NE2
HIS
121
1_555
A
ZN
301
C
ZN
ZN
1_555
A
HIS
230
A
NE2
HIS
125
1_555
105.0
A
HIS
226
A
NE2
HIS
121
1_555
A
ZN
301
C
ZN
ZN
1_555
A
HIS
236
A
NE2
HIS
131
1_555
104.9
A
HIS
230
A
NE2
HIS
125
1_555
A
ZN
301
C
ZN
ZN
1_555
A
HIS
236
A
NE2
HIS
131
1_555
87.8
A
HIS
226
A
NE2
HIS
121
1_555
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
O23
0Y3
1_555
89.2
A
HIS
230
A
NE2
HIS
125
1_555
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
O23
0Y3
1_555
83.9
A
HIS
236
A
NE2
HIS
131
1_555
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
O23
0Y3
1_555
165.0
A
HIS
226
A
NE2
HIS
121
1_555
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
O25
0Y3
1_555
128.8
A
HIS
230
A
NE2
HIS
125
1_555
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
O25
0Y3
1_555
123.5
A
HIS
236
A
NE2
HIS
131
1_555
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
O25
0Y3
1_555
93.2
B
0Y3
306
W
O23
0Y3
1_555
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
O25
0Y3
1_555
81.1
A
HIS
226
A
NE2
HIS
121
1_555
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
N22
0Y3
1_555
97.7
A
HIS
230
A
NE2
HIS
125
1_555
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
N22
0Y3
1_555
109.0
A
HIS
236
A
NE2
HIS
131
1_555
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
N22
0Y3
1_555
147.2
B
0Y3
306
W
O23
0Y3
1_555
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
N22
0Y3
1_555
29.8
B
0Y3
306
W
O25
0Y3
1_555
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
N22
0Y3
1_555
54.0
B
SER
129
B
OG
SER
24
1_555
B
CA
305
V
CA
CA
1_555
B
ASP
131
B
OD2
ASP
26
1_555
85.4
B
SER
129
B
OG
SER
24
1_555
B
CA
305
V
CA
CA
1_555
B
ASP
206
B
OD1
ASP
101
1_555
51.8
B
ASP
131
B
OD2
ASP
26
1_555
B
CA
305
V
CA
CA
1_555
B
ASP
206
B
OD1
ASP
101
1_555
134.2
B
SER
129
B
OG
SER
24
1_555
B
CA
305
V
CA
CA
1_555
B
ASP
206
B
O
ASP
101
1_555
118.4
B
ASP
131
B
OD2
ASP
26
1_555
B
CA
305
V
CA
CA
1_555
B
ASP
206
B
O
ASP
101
1_555
152.7
B
ASP
206
B
OD1
ASP
101
1_555
B
CA
305
V
CA
CA
1_555
B
ASP
206
B
O
ASP
101
1_555
66.7
B
SER
129
B
OG
SER
24
1_555
B
CA
305
V
CA
CA
1_555
B
GLU
208
B
O
GLU
103
1_555
140.7
B
ASP
131
B
OD2
ASP
26
1_555
B
CA
305
V
CA
CA
1_555
B
GLU
208
B
O
GLU
103
1_555
84.9
B
ASP
206
B
OD1
ASP
101
1_555
B
CA
305
V
CA
CA
1_555
B
GLU
208
B
O
GLU
103
1_555
137.6
B
ASP
206
B
O
ASP
101
1_555
B
CA
305
V
CA
CA
1_555
B
GLU
208
B
O
GLU
103
1_555
83.8
B
ASP
165
B
O
ASP
60
1_555
B
CA
303
T
CA
CA
1_555
B
GLY
197
B
O
GLY
92
1_555
168.8
B
ASP
165
B
O
ASP
60
1_555
B
CA
303
T
CA
CA
1_555
B
GLN
199
B
O
GLN
94
1_555
83.8
B
GLY
197
B
O
GLY
92
1_555
B
CA
303
T
CA
CA
1_555
B
GLN
199
B
O
GLN
94
1_555
87.9
B
ASP
165
B
O
ASP
60
1_555
B
CA
303
T
CA
CA
1_555
B
ASP
201
B
OD1
ASP
96
1_555
77.8
B
GLY
197
B
O
GLY
92
1_555
B
CA
303
T
CA
CA
1_555
B
ASP
201
B
OD1
ASP
96
1_555
94.3
B
GLN
199
B
O
GLN
94
1_555
B
CA
303
T
CA
CA
1_555
B
ASP
201
B
OD1
ASP
96
1_555
87.7
B
HIS
175
B
NE2
HIS
70
1_555
B
ZN
302
S
ZN
ZN
1_555
B
ASP
177
B
OD1
ASP
72
1_555
122.1
B
HIS
175
B
NE2
HIS
70
1_555
B
ZN
302
S
ZN
ZN
1_555
B
HIS
190
B
NE2
HIS
85
1_555
115.9
B
ASP
177
B
OD1
ASP
72
1_555
B
ZN
302
S
ZN
ZN
1_555
B
HIS
190
B
NE2
HIS
85
1_555
99.0
B
HIS
175
B
NE2
HIS
70
1_555
B
ZN
302
S
ZN
ZN
1_555
B
HIS
203
B
ND1
HIS
98
1_555
123.5
B
ASP
177
B
OD1
ASP
72
1_555
B
ZN
302
S
ZN
ZN
1_555
B
HIS
203
B
ND1
HIS
98
1_555
85.9
B
HIS
190
B
NE2
HIS
85
1_555
B
ZN
302
S
ZN
ZN
1_555
B
HIS
203
B
ND1
HIS
98
1_555
104.5
B
GLY
183
B
O
GLY
78
1_555
B
CA
304
U
CA
CA
1_555
B
ASP
185
B
O
ASP
80
1_555
93.4
B
GLY
183
B
O
GLY
78
1_555
B
CA
304
U
CA
CA
1_555
B
LEU
187
B
O
LEU
82
1_555
158.4
B
ASP
185
B
O
ASP
80
1_555
B
CA
304
U
CA
CA
1_555
B
LEU
187
B
O
LEU
82
1_555
87.9
B
GLY
183
B
O
GLY
78
1_555
B
CA
304
U
CA
CA
1_555
B
ASP
205
B
OD2
ASP
100
1_555
76.4
B
ASP
185
B
O
ASP
80
1_555
B
CA
304
U
CA
CA
1_555
B
ASP
205
B
OD2
ASP
100
1_555
164.8
B
LEU
187
B
O
LEU
82
1_555
B
CA
304
U
CA
CA
1_555
B
ASP
205
B
OD2
ASP
100
1_555
97.5
B
GLY
183
B
O
GLY
78
1_555
B
CA
304
U
CA
CA
1_555
B
GLU
208
B
OE2
GLU
103
1_555
74.6
B
ASP
185
B
O
ASP
80
1_555
B
CA
304
U
CA
CA
1_555
B
GLU
208
B
OE2
GLU
103
1_555
62.7
B
LEU
187
B
O
LEU
82
1_555
B
CA
304
U
CA
CA
1_555
B
GLU
208
B
OE2
GLU
103
1_555
87.0
B
ASP
205
B
OD2
ASP
100
1_555
B
CA
304
U
CA
CA
1_555
B
GLU
208
B
OE2
GLU
103
1_555
103.3
B
HIS
226
B
NE2
HIS
121
1_555
B
ZN
301
R
ZN
ZN
1_555
B
HIS
230
B
NE2
HIS
125
1_555
103.7
B
HIS
226
B
NE2
HIS
121
1_555
B
ZN
301
R
ZN
ZN
1_555
B
HIS
236
B
NE2
HIS
131
1_555
102.2
B
HIS
230
B
NE2
HIS
125
1_555
B
ZN
301
R
ZN
ZN
1_555
B
HIS
236
B
NE2
HIS
131
1_555
90.1
B
HIS
226
B
NE2
HIS
121
1_555
B
ZN
301
R
ZN
ZN
1_555
B
0Y3
306
W
O78
0Y3
1_555
126.6
B
HIS
230
B
NE2
HIS
125
1_555
B
ZN
301
R
ZN
ZN
1_555
B
0Y3
306
W
O78
0Y3
1_555
128.2
B
HIS
236
B
NE2
HIS
131
1_555
B
ZN
301
R
ZN
ZN
1_555
B
0Y3
306
W
O78
0Y3
1_555
90.3
B
HIS
226
B
NE2
HIS
121
1_555
B
ZN
301
R
ZN
ZN
1_555
B
0Y3
306
W
O77
0Y3
1_555
94.9
B
HIS
230
B
NE2
HIS
125
1_555
B
ZN
301
R
ZN
ZN
1_555
B
0Y3
306
W
O77
0Y3
1_555
81.5
B
HIS
236
B
NE2
HIS
131
1_555
B
ZN
301
R
ZN
ZN
1_555
B
0Y3
306
W
O77
0Y3
1_555
162.3
B
0Y3
306
W
O78
0Y3
1_555
B
ZN
301
R
ZN
ZN
1_555
B
0Y3
306
W
O77
0Y3
1_555
82.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
THR
155
A
O
THR
50
A
N
ILE
121
A
N
ILE
16
A
N
THR
122
A
N
THR
17
A
O
ILE
166
A
O
ILE
61
A
N
GLN
169
A
N
GLN
64
A
O
PHE
204
A
O
PHE
99
A
O
HIS
203
A
O
HIS
98
A
N
HIS
190
A
N
HIS
85
A
N
SER
211
A
N
SER
106
A
O
TYR
218
A
O
TYR
113
B
O
THR
155
B
O
THR
50
B
N
ILE
121
B
N
ILE
16
B
N
TRP
124
B
N
TRP
19
B
O
ILE
168
B
O
ILE
63
B
N
GLY
171
B
N
GLY
66
B
O
PHE
204
B
O
PHE
99
B
O
HIS
203
B
O
HIS
98
B
N
HIS
190
B
N
HIS
85
B
N
SER
211
B
N
SER
106
B
O
TYR
218
B
O
TYR
113
1
A
ALA
173
51.59
-125.58
1
A
HIS
175
-150.09
-156.43
1
A
ASP
185
67.11
-160.62
1
A
TYR
268
-122.89
-57.76
1
B
ARG
134
A
-36.33
-37.65
1
B
ARG
134
B
-23.35
-36.07
1
B
ALA
173
56.70
-130.52
1
B
HIS
175
-133.66
-121.99
1
B
ASP
185
68.27
-166.18
1
B
PRO
246
-54.83
-4.00
19.01
0.73
0.00
1.07
-1.10
0.00
1.17
Both REFMAC and PHENIX used
0.3114
0.2771
0.2790
2.902
38.850
357
7158
7128
5.01
98.03
0.45
RANDOM
1
grouped/Isotropic
THROUGHOUT
2.00
-3
MOLREP
30.80
0.90
1.11
4H1Q
ML
FLAT BULK SOLVENT MODEL
2.902
38.850
148
2955
199
0
2608
0.011
2910
1.458
3928
26.662
1056
0.084
368
0.008
519
0.3009
0.2665
3.3223
118
2238
2238
97.00
0.3218
0.2621
4.1849
119
2260
2260
99.00
0.3083
0.2979
38.8534
120
2273
2273
98.00
26.65
2.9
50.0
4H2E
7301
7158
0
-3
0.195
0.170
1
7.01
4.15
98.0
0.530
2.90
3.08
2.90
1189
0.463
1
4.12
96.5
0.335
3.08
3.29
4.40
1093
0.293
1
4.22
98.2
0.274
3.29
3.55
5.52
1012
0.240
1
4.23
98.4
0.186
3.55
3.89
7.36
947
0.162
1
4.19
98.6
0.146
3.89
4.34
8.78
851
0.127
1
4.16
98.7
0.136
4.34
5.01
10.04
770
0.118
1
4.10
97.8
0.149
5.01
6.12
8.77
633
0.130
1
4.10
99.1
0.114
6.12
8.58
10.06
510
0.099
1
4.01
97.8
0.073
8.58
50.0
14.84
296
0.063
1
4.00
97.6
data collection
DNA
phasing
MOLREP
refinement
PHENIX
(phenix.refine: 1.8_1069)/REFMAC
data reduction
XDS
data scaling
XDS
Crystal structure of an MMP twin inhibitor complexing two MMP-9 catalytic domains
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
6
N
N
6
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
7
N
N
4
N
N
4
N
N
4
N
N
5
N
N
6
N
N
8
N
N
8
N
N
A
PRO
133
A
PRO
28
HELX_P
A
THR
152
A
THR
47
1
1
20
A
LEU
220
A
LEU
115
HELX_P
A
LEU
232
A
LEU
127
1
2
13
A
HIS
257
A
HIS
152
HELX_P
A
TYR
268
A
TYR
163
1
3
12
B
PRO
133
B
PRO
28
HELX_P
B
ALA
150
B
ALA
45
1
4
18
B
LEU
220
B
LEU
115
HELX_P
B
LEU
232
B
LEU
127
1
5
13
B
HIS
257
B
HIS
152
HELX_P
B
TYR
268
B
TYR
163
1
6
12
metalc
2.622
A
ASP
165
A
O
ASP
60
1_555
A
CA
303
E
CA
CA
1_555
metalc
2.090
A
HIS
175
A
NE2
HIS
70
1_555
A
ZN
302
D
ZN
ZN
1_555
metalc
2.016
A
ASP
177
A
OD1
ASP
72
1_555
A
ZN
302
D
ZN
ZN
1_555
metalc
2.540
A
ASP
182
A
OD2
ASP
77
1_555
A
CA
304
F
CA
CA
1_555
metalc
2.104
A
GLY
183
A
O
GLY
78
1_555
A
CA
304
F
CA
CA
1_555
metalc
2.432
A
ASP
185
A
O
ASP
80
1_555
A
CA
304
F
CA
CA
1_555
metalc
2.213
A
LEU
187
A
O
LEU
82
1_555
A
CA
304
F
CA
CA
1_555
metalc
2.276
A
HIS
190
A
NE2
HIS
85
1_555
A
ZN
302
D
ZN
ZN
1_555
metalc
2.589
A
GLY
197
A
O
GLY
92
1_555
A
CA
303
E
CA
CA
1_555
metalc
2.509
A
GLN
199
A
O
GLN
94
1_555
A
CA
303
E
CA
CA
1_555
metalc
2.670
A
ASP
201
A
OD1
ASP
96
1_555
A
CA
303
E
CA
CA
1_555
metalc
1.965
A
HIS
203
A
ND1
HIS
98
1_555
A
ZN
302
D
ZN
ZN
1_555
metalc
2.278
A
ASP
205
A
OD2
ASP
100
1_555
A
CA
304
F
CA
CA
1_555
metalc
2.486
A
GLU
208
A
OE2
GLU
103
1_555
A
CA
304
F
CA
CA
1_555
metalc
1.879
A
HIS
226
A
NE2
HIS
121
1_555
A
ZN
301
C
ZN
ZN
1_555
metalc
2.212
A
HIS
230
A
NE2
HIS
125
1_555
A
ZN
301
C
ZN
ZN
1_555
metalc
1.911
A
HIS
236
A
NE2
HIS
131
1_555
A
ZN
301
C
ZN
ZN
1_555
metalc
2.001
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
O23
0Y3
1_555
metalc
2.143
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
O25
0Y3
1_555
metalc
2.692
A
ZN
301
C
ZN
ZN
1_555
B
0Y3
306
W
N22
0Y3
1_555
metalc
3.125
B
SER
129
B
OG
SER
24
1_555
B
CA
305
V
CA
CA
1_555
metalc
2.851
B
ASP
131
B
OD2
ASP
26
1_555
B
CA
305
V
CA
CA
1_555
metalc
2.721
B
ASP
165
B
O
ASP
60
1_555
B
CA
303
T
CA
CA
1_555
metalc
2.479
B
HIS
175
B
NE2
HIS
70
1_555
B
ZN
302
S
ZN
ZN
1_555
metalc
1.995
B
ASP
177
B
OD1
ASP
72
1_555
B
ZN
302
S
ZN
ZN
1_555
metalc
2.303
B
GLY
183
B
O
GLY
78
1_555
B
CA
304
U
CA
CA
1_555
metalc
2.367
B
ASP
185
B
O
ASP
80
1_555
B
CA
304
U
CA
CA
1_555
metalc
2.182
B
LEU
187
B
O
LEU
82
1_555
B
CA
304
U
CA
CA
1_555
metalc
2.366
B
HIS
190
B
NE2
HIS
85
1_555
B
ZN
302
S
ZN
ZN
1_555
metalc
2.445
B
GLY
197
B
O
GLY
92
1_555
B
CA
303
T
CA
CA
1_555
metalc
2.685
B
GLN
199
B
O
GLN
94
1_555
B
CA
303
T
CA
CA
1_555
metalc
2.517
B
ASP
201
B
OD1
ASP
96
1_555
B
CA
303
T
CA
CA
1_555
metalc
2.154
B
HIS
203
B
ND1
HIS
98
1_555
B
ZN
302
S
ZN
ZN
1_555
metalc
2.307
B
ASP
205
B
OD2
ASP
100
1_555
B
CA
304
U
CA
CA
1_555
metalc
2.551
B
ASP
206
B
OD1
ASP
101
1_555
B
CA
305
V
CA
CA
1_555
metalc
2.616
B
ASP
206
B
O
ASP
101
1_555
B
CA
305
V
CA
CA
1_555
metalc
2.690
B
GLU
208
B
OE2
GLU
103
1_555
B
CA
304
U
CA
CA
1_555
metalc
2.376
B
GLU
208
B
O
GLU
103
1_555
B
CA
305
V
CA
CA
1_555
metalc
2.119
B
HIS
226
B
NE2
HIS
121
1_555
B
ZN
301
R
ZN
ZN
1_555
metalc
2.336
B
HIS
230
B
NE2
HIS
125
1_555
B
ZN
301
R
ZN
ZN
1_555
metalc
1.984
B
HIS
236
B
NE2
HIS
131
1_555
B
ZN
301
R
ZN
ZN
1_555
metalc
1.993
B
ZN
301
R
ZN
ZN
1_555
B
0Y3
306
W
O78
0Y3
1_555
metalc
1.995
B
ZN
301
R
ZN
ZN
1_555
B
0Y3
306
W
O77
0Y3
1_555
HYDROLASE/HYDROLASE INHIBITOR
HYDROLASE/TWIN INHIBITOR, Zincin-like, Gelatinase, Collagenase (Catalytic Domain), HYDROLASE-HYDROLASE INHIBITOR complex
A
GLY
253
A
GLY
148
1
A
PRO
254
A
PRO
149
16.06
B
TYR
268
B
TYR
163
1
B
GLY
269
B
GLY
164
2.09
MMP9_HUMAN
UNP
1
107
P14780
FQTFEGDLKWHHHNITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDG
LLAHAFPPGPGIQGDAHFDDDELWSLGKGV
MMP9_HUMAN
UNP
1
392
P14780
GYSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGPPLHKDDVNGIRHLYG
107
216
4H2E
107
216
P14780
A
1
2
111
392
444
4H2E
217
269
P14780
A
2
112
164
107
216
4H2E
107
216
P14780
B
1
2
111
392
444
4H2E
217
269
P14780
B
2
112
164
1
expression tag
GLY
106
4H2E
A
P14780
UNP
1
3
expression tag
GLY
106
4H2E
B
P14780
UNP
1
5
2
5
2
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
A
THR
155
A
THR
50
A
ARG
158
A
ARG
53
A
ASN
120
A
ASN
15
A
ILE
125
A
ILE
20
A
ILE
166
A
ILE
61
A
GLY
171
A
GLY
66
A
ALA
202
A
ALA
97
A
ASP
205
A
ASP
100
A
ALA
189
A
ALA
84
A
ALA
191
A
ALA
86
A
TRP
210
A
TRP
105
A
SER
211
A
SER
106
A
TYR
218
A
TYR
113
A
SER
219
A
SER
114
B
THR
155
B
THR
50
B
ARG
158
B
ARG
53
B
ASN
120
B
ASN
15
B
ILE
125
B
ILE
20
B
ILE
166
B
ILE
61
B
GLY
171
B
GLY
66
B
ALA
202
B
ALA
97
B
ASP
205
B
ASP
100
B
ALA
189
B
ALA
84
B
ALA
191
B
ALA
86
B
TRP
210
B
TRP
105
B
SER
211
B
SER
106
B
TYR
218
B
TYR
113
B
SER
219
B
SER
114
BINDING SITE FOR RESIDUE ZN A 301
A
ZN
301
Software
4
BINDING SITE FOR RESIDUE ZN A 302
A
ZN
302
Software
4
BINDING SITE FOR RESIDUE CA A 303
A
CA
303
Software
4
BINDING SITE FOR RESIDUE CA A 304
A
CA
304
Software
6
BINDING SITE FOR RESIDUE PEG A 305
A
PEG
305
Software
2
BINDING SITE FOR RESIDUE PEG A 306
A
PEG
306
Software
4
BINDING SITE FOR RESIDUE PEG A 307
A
PEG
307
Software
1
BINDING SITE FOR RESIDUE PEG A 308
A
PEG
308
Software
3
BINDING SITE FOR RESIDUE PEG A 309
A
PEG
309
Software
5
BINDING SITE FOR RESIDUE PEG A 310
A
PEG
310
Software
2
BINDING SITE FOR RESIDUE ACT A 311
A
ACT
311
Software
1
BINDING SITE FOR RESIDUE ACT A 312
A
ACT
312
Software
1
BINDING SITE FOR RESIDUE ACT A 313
A
ACT
313
Software
1
BINDING SITE FOR RESIDUE BCN A 314
A
BCN
314
Software
4
BINDING SITE FOR RESIDUE BCN A 315
A
BCN
315
Software
1
BINDING SITE FOR RESIDUE ZN B 301
B
ZN
301
Software
4
BINDING SITE FOR RESIDUE ZN B 302
B
ZN
302
Software
4
BINDING SITE FOR RESIDUE CA B 303
B
CA
303
Software
5
BINDING SITE FOR RESIDUE CA B 304
B
CA
304
Software
6
BINDING SITE FOR RESIDUE CA B 305
B
CA
305
Software
5
BINDING SITE FOR RESIDUE 0Y3 B 306
B
0Y3
306
Software
33
BINDING SITE FOR RESIDUE PEG B 307
B
PEG
307
Software
1
BINDING SITE FOR RESIDUE PEG B 308
B
PEG
308
Software
4
BINDING SITE FOR RESIDUE PEG B 309
B
PEG
309
Software
3
BINDING SITE FOR RESIDUE ACT B 310
B
ACT
310
Software
4
BINDING SITE FOR RESIDUE BCN B 311
B
BCN
311
Software
6
A
HIS
226
A
HIS
121
4
1_555
A
HIS
230
A
HIS
125
4
1_555
A
HIS
236
A
HIS
131
4
1_555
B
0Y3
306
W
0Y3
4
1_555
A
HIS
175
A
HIS
70
4
1_555
A
ASP
177
A
ASP
72
4
1_555
A
HIS
190
A
HIS
85
4
1_555
A
HIS
203
A
HIS
98
4
1_555
A
ASP
165
A
ASP
60
4
1_555
A
GLY
197
A
GLY
92
4
1_555
A
GLN
199
A
GLN
94
4
1_555
A
ASP
201
A
ASP
96
4
1_555
A
ASP
182
A
ASP
77
6
1_555
A
GLY
183
A
GLY
78
6
1_555
A
ASP
185
A
ASP
80
6
1_555
A
LEU
187
A
LEU
82
6
1_555
A
ASP
205
A
ASP
100
6
1_555
A
GLU
208
A
GLU
103
6
1_555
A
LYS
258
A
LYS
153
2
1_555
B
ALA
146
B
ALA
41
2
1_554
A
GLU
241
A
GLU
136
4
1_555
A
HOH
425
CA
HOH
4
1_555
B
PEG
308
Y
PEG
4
1_555
B
HOH
460
DA
HOH
4
1_555
A
PEG
308
J
PEG
1
1_555
A
TYR
179
A
TYR
74
3
1_555
A
PEG
307
I
PEG
3
1_555
A
HOH
420
CA
HOH
3
1_555
A
ALA
173
A
ALA
68
5
1_555
A
GLU
174
A
GLU
69
5
1_555
A
PHE
181
A
PHE
76
5
1_555
A
ACT
312
N
ACT
5
1_555
A
BCN
314
P
BCN
5
1_555
A
ASN
127
A
ASN
22
2
1_555
A
VAL
172
A
VAL
67
2
1_555
A
HOH
440
CA
HOH
1
1_555
A
PEG
309
K
PEG
1
1_555
A
HOH
463
CA
HOH
1
1_555
A
ASP
182
A
ASP
77
4
1_555
A
PEG
309
K
PEG
4
1_555
B
ARG
249
B
ARG
144
4
1_555
B
GLU
252
B
GLU
147
4
1_555
A
HOH
473
CA
HOH
1
1_555
B
HIS
226
B
HIS
121
4
1_555
B
HIS
230
B
HIS
125
4
1_555
B
HIS
236
B
HIS
131
4
1_555
B
0Y3
306
W
0Y3
4
1_555
B
HIS
175
B
HIS
70
4
1_555
B
ASP
177
B
ASP
72
4
1_555
B
HIS
190
B
HIS
85
4
1_555
B
HIS
203
B
HIS
98
4
1_555
B
ALA
164
B
ALA
59
5
1_555
B
ASP
165
B
ASP
60
5
1_555
B
GLY
197
B
GLY
92
5
1_555
B
GLN
199
B
GLN
94
5
1_555
B
ASP
201
B
ASP
96
5
1_555
B
ASP
182
B
ASP
77
6
1_555
B
GLY
183
B
GLY
78
6
1_555
B
ASP
185
B
ASP
80
6
1_555
B
LEU
187
B
LEU
82
6
1_555
B
ASP
205
B
ASP
100
6
1_555
B
GLU
208
B
GLU
103
6
1_555
B
SER
129
B
SER
24
5
1_555
B
ASP
131
B
ASP
26
5
1_555
B
ASP
206
B
ASP
101
5
1_555
B
GLU
208
B
GLU
103
5
1_555
B
TRP
210
B
TRP
105
5
1_555
A
LEU
187
A
LEU
82
33
1_555
A
LEU
188
A
LEU
83
33
1_555
A
ALA
189
A
ALA
84
33
1_555
A
LEU
222
A
LEU
117
33
1_555
A
HIS
226
A
HIS
121
33
1_555
A
GLU
227
A
GLU
122
33
1_555
A
HIS
230
A
HIS
125
33
1_555
A
ASP
235
A
ASP
130
33
1_555
A
HIS
236
A
HIS
131
33
1_555
A
LEU
243
A
LEU
138
33
1_555
A
TYR
245
A
TYR
140
33
1_555
A
PRO
246
A
PRO
141
33
1_555
A
TYR
248
A
TYR
143
33
1_555
A
ZN
301
C
ZN
33
1_555
B
GLY
106
B
GLY
1
33
1_555
B
PHE
107
B
PHE
2
33
1_555
B
LEU
188
B
LEU
83
33
1_555
B
ALA
189
B
ALA
84
33
1_555
B
LEU
222
B
LEU
117
33
1_555
B
VAL
223
B
VAL
118
33
1_555
B
HIS
226
B
HIS
121
33
1_555
B
GLU
227
B
GLU
122
33
1_555
B
HIS
230
B
HIS
125
33
1_555
B
ASP
235
B
ASP
130
33
1_555
B
HIS
236
B
HIS
131
33
1_555
B
LEU
243
B
LEU
138
33
1_555
B
TYR
245
B
TYR
140
33
1_555
B
PRO
246
B
PRO
141
33
1_555
B
MET
247
B
MET
142
33
1_555
B
TYR
248
B
TYR
143
33
1_555
B
ZN
301
R
ZN
33
1_555
B
HOH
437
DA
HOH
33
1_555
B
HOH
459
DA
HOH
33
1_555
B
PEG
308
Y
PEG
1
1_556
A
PEG
306
H
PEG
4
1_555
B
PRO
180
B
PRO
75
4
1_555
B
PEG
307
X
PEG
4
1_554
B
PEG
309
Z
PEG
4
1_555
B
GLY
178
B
GLY
73
3
1_555
B
TYR
179
B
TYR
74
3
1_555
B
PEG
308
Y
PEG
3
1_555
B
PHE
250
B
PHE
145
4
1_555
B
THR
251
B
THR
146
4
1_555
B
GLU
252
B
GLU
147
4
1_555
B
HOH
458
DA
HOH
4
1_555
B
ALA
173
B
ALA
68
6
1_555
B
GLU
174
B
GLU
69
6
1_555
B
PRO
180
B
PRO
75
6
1_555
B
PHE
181
B
PHE
76
6
1_555
B
HOH
449
DA
HOH
6
1_555
B
HOH
457
DA
HOH
6
1_555
4
P 1 21 1