0.004436
0.000000
0.001289
0.000000
0.014373
0.000000
0.000000
0.000000
0.009975
0.000000
0.000000
0.000000
Frey, K.M.
Anderson, K.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
106.210
90.000
225.451
69.575
104.401
C21 H15 F2 N3 O4
411.358
(2E)-3-(3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-5-fluorophenyl)prop-2-enenitrile
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
C
N
3
N
N
N
4
N
C
N
5
N
O
N
6
N
C
N
7
N
C
N
8
N
N
N
9
N
C
N
10
N
C
N
11
N
O
Y
12
N
C
Y
13
N
C
Y
14
N
C
N
15
N
F
Y
16
N
C
Y
17
N
C
Y
18
N
C
N
19
N
O
Y
20
N
C
Y
21
N
C
Y
22
N
C
Y
23
N
C
N
24
N
F
Y
25
N
C
Y
26
N
C
N
27
N
C
N
28
N
C
N
29
N
C
N
30
N
N
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
N
N
47
S
C
N
48
N
C
N
49
N
O
N
50
N
C
N
51
N
O
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
N
N
60
S
C
N
61
N
C
N
62
N
O
N
63
N
C
N
64
N
C
N
65
N
C
N
66
N
N
N
67
N
C
N
68
N
N
N
69
N
N
N
70
N
O
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
N
N
87
S
C
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
C
N
92
N
O
N
93
N
N
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
S
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
C
N
109
N
O
N
110
N
O
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
R
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
S
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
N
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
N
N
173
N
C
N
174
N
C
N
175
N
O
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
N
C
Y
187
N
C
Y
188
N
N
Y
189
N
C
Y
190
N
C
Y
191
N
N
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
S
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
N
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
S
N
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
R
C
N
354
N
O
N
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
N
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
N
422
N
C
N
423
N
C
N
424
N
O
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
1
N
sing
Y
2
N
doub
Y
3
N
sing
Y
4
N
sing
Y
5
N
doub
N
6
N
doub
Y
7
N
doub
Y
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
doub
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
doub
Y
22
N
doub
Y
23
N
sing
Y
24
N
sing
N
25
N
sing
Y
26
N
doub
Y
27
N
doub
Y
28
N
sing
N
29
N
sing
N
30
E
doub
N
31
N
sing
N
32
N
trip
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
doub
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
Y
187
N
sing
Y
188
N
doub
Y
189
N
doub
N
190
N
sing
Y
191
N
sing
N
192
N
sing
Y
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
Y
295
N
doub
Y
296
N
sing
Y
297
N
sing
N
298
N
sing
Y
299
N
doub
N
300
N
sing
Y
301
N
doub
N
302
N
sing
Y
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
doub
N
376
N
sing
Y
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
Y
392
N
doub
Y
393
N
sing
Y
394
N
sing
N
395
N
sing
Y
396
N
doub
N
397
N
sing
Y
398
N
doub
N
399
N
sing
Y
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
134
19501
19503
10.1021/ja3092642
23163887
Crystal Structures of HIV-1 Reverse Transcriptase with Picomolar Inhibitors Reveal Key Interactions for Drug Design.
2012
10.2210/pdb4h4o/pdb
pdb_00004h4o
77
1
Monochromator
CCD
2012-06-13
ADSC QUANTUM 315
Cryogenically cooled double crystal monochrometer with horizontal focusing sagittal bend second mono crystal with 4:1 magnification ratio and vertically focusing mirror.
SINGLE WAVELENGTH
M
x-ray
1
1.075
1.0
X29A
NSLS
1.075
SYNCHROTRON
NSLS BEAMLINE X29A
63989.238
Reverse transcriptase/ribonuclease H, Exoribonuclease H, p66 RT
2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2
HIV-1 Reverse Transcriptase, p66 Subunit
C280S, K172A, K173A
1
man
polymer
50039.488
Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT
2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2
HIV-1 Reverse Transcriptase, p51 Subunit
C280S
1
man
polymer
411.358
(2E)-3-(3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-5-fluorophenyl)prop-2-enenitrile
1
syn
non-polymer
18.015
water
49
nat
water
Gag-Pol polyprotein
Gag-Pol polyprotein
no
no
MVPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFR
ELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPA
IFQSSMTKILEPFAAQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDK
WTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVY
YDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW
ETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTE
LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG
MVPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFR
ELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPA
IFQSSMTKILEPFAAQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDK
WTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVY
YDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW
ETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTE
LQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG
A
polypeptide(L)
no
no
PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFREL
NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWT
VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYD
PSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET
WWTEYWQATWIPEWEFVNTPPLVKLWYQ
PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFREL
NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWT
VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYD
PSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET
WWTEYWQATWIPEWEFVNTPPLVKLWYQ
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
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n
n
n
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n
n
n
n
n
n
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n
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n
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n
n
n
n
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n
n
n
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n
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n
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n
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n
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n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
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n
n
HIV-1
Genus Name: Lentivirus
Bh10 Isolate
sample
p66 RT
11678
Human immunodeficiency virus type 1 BH10
469008
Escherichia coli
BL21(DE3)
plasmid
pCDF-2
HIV-1
Genus Name: Lentivirus
Bh10 isolate
sample
p51 RT
11678
Human immunodeficiency virus type 1
469008
Escherichia coli
BL21(DE3)
plasmid
pCDF-2
1
3.45
64.32
VAPOR DIFFUSION, HANGING DROP
5.5
20% (w/v) PEG 8000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, 5 mM spermine-HCl, 50 mM HEPES pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2012-12-05
1
1
2013-01-02
1
2
2017-11-15
1
3
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-09-17
REL
REL
506
(2E)-3-(3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]-4-fluorophenoxy}-5-fluorophenyl)prop-2-enenitrile
HOH
water
1S9E
PDB Code 1S9E
PDB
experimental model
506
1
3
506
506
601
A
HOH
5
4
HOH
HOH
701
A
HOH
7
4
HOH
HOH
702
A
HOH
10
4
HOH
HOH
703
A
HOH
12
4
HOH
HOH
704
A
HOH
14
4
HOH
HOH
705
A
HOH
17
4
HOH
HOH
706
A
HOH
18
4
HOH
HOH
707
A
HOH
19
4
HOH
HOH
708
A
HOH
20
4
HOH
HOH
709
A
HOH
23
4
HOH
HOH
710
A
HOH
24
4
HOH
HOH
711
A
HOH
26
4
HOH
HOH
712
A
HOH
28
4
HOH
HOH
713
A
HOH
29
4
HOH
HOH
714
A
HOH
34
4
HOH
HOH
715
A
HOH
35
4
HOH
HOH
716
A
HOH
36
4
HOH
HOH
717
A
HOH
38
4
HOH
HOH
718
A
HOH
40
4
HOH
HOH
719
A
HOH
41
4
HOH
HOH
720
A
HOH
42
4
HOH
HOH
721
A
HOH
47
4
HOH
HOH
722
A
HOH
27
4
HOH
HOH
501
B
HOH
1
4
HOH
HOH
502
B
HOH
2
4
HOH
HOH
503
B
HOH
3
4
HOH
HOH
504
B
HOH
4
4
HOH
HOH
505
B
HOH
6
4
HOH
HOH
506
B
HOH
8
4
HOH
HOH
507
B
HOH
9
4
HOH
HOH
508
B
HOH
11
4
HOH
HOH
509
B
HOH
13
4
HOH
HOH
510
B
HOH
15
4
HOH
HOH
511
B
HOH
16
4
HOH
HOH
512
B
HOH
21
4
HOH
HOH
513
B
HOH
22
4
HOH
HOH
514
B
HOH
25
4
HOH
HOH
515
B
HOH
30
4
HOH
HOH
516
B
HOH
31
4
HOH
HOH
517
B
HOH
32
4
HOH
HOH
518
B
HOH
33
4
HOH
HOH
519
B
HOH
37
4
HOH
HOH
520
B
HOH
39
4
HOH
HOH
521
B
HOH
43
4
HOH
HOH
522
B
HOH
44
4
HOH
HOH
523
B
HOH
45
4
HOH
HOH
524
B
HOH
46
4
HOH
HOH
525
B
HOH
48
4
HOH
HOH
526
B
HOH
49
4
HOH
HOH
527
B
n
1
-1
A
VAL
0
n
2
VAL
0
A
PRO
1
n
3
PRO
1
A
ILE
2
n
4
ILE
2
A
SER
3
n
5
SER
3
A
PRO
4
n
6
PRO
4
A
ILE
5
n
7
ILE
5
A
GLU
6
n
8
GLU
6
A
THR
7
n
9
THR
7
A
VAL
8
n
10
VAL
8
A
PRO
9
n
11
PRO
9
A
VAL
10
n
12
VAL
10
A
LYS
11
n
13
LYS
11
A
LEU
12
n
14
LEU
12
A
LYS
13
n
15
LYS
13
A
PRO
14
n
16
PRO
14
A
GLY
15
n
17
GLY
15
A
MET
16
n
18
MET
16
A
ASP
17
n
19
ASP
17
A
GLY
18
n
20
GLY
18
A
PRO
19
n
21
PRO
19
A
LYS
20
n
22
LYS
20
A
VAL
21
n
23
VAL
21
A
LYS
22
n
24
LYS
22
A
GLN
23
n
25
GLN
23
A
TRP
24
n
26
TRP
24
A
PRO
25
n
27
PRO
25
A
LEU
26
n
28
LEU
26
A
THR
27
n
29
THR
27
A
GLU
28
n
30
GLU
28
A
GLU
29
n
31
GLU
29
A
LYS
30
n
32
LYS
30
A
ILE
31
n
33
ILE
31
A
LYS
32
n
34
LYS
32
A
ALA
33
n
35
ALA
33
A
LEU
34
n
36
LEU
34
A
VAL
35
n
37
VAL
35
A
GLU
36
n
38
GLU
36
A
ILE
37
n
39
ILE
37
A
CYS
38
n
40
CYS
38
A
THR
39
n
41
THR
39
A
GLU
40
n
42
GLU
40
A
MET
41
n
43
MET
41
A
GLU
42
n
44
GLU
42
A
LYS
43
n
45
LYS
43
A
GLU
44
n
46
GLU
44
A
GLY
45
n
47
GLY
45
A
LYS
46
n
48
LYS
46
A
ILE
47
n
49
ILE
47
A
SER
48
n
50
SER
48
A
LYS
49
n
51
LYS
49
A
ILE
50
n
52
ILE
50
A
GLY
51
n
53
GLY
51
A
PRO
52
n
54
PRO
52
A
GLU
53
n
55
GLU
53
A
ASN
54
n
56
ASN
54
A
PRO
55
n
57
PRO
55
A
TYR
56
n
58
TYR
56
A
ASN
57
n
59
ASN
57
A
THR
58
n
60
THR
58
A
PRO
59
n
61
PRO
59
A
VAL
60
n
62
VAL
60
A
PHE
61
n
63
PHE
61
A
ALA
62
n
64
ALA
62
A
ILE
63
n
65
ILE
63
A
LYS
64
n
66
LYS
64
A
LYS
65
n
67
LYS
65
A
LYS
66
n
68
LYS
66
A
ASP
67
n
69
ASP
67
A
SER
68
n
70
SER
68
A
THR
69
n
71
THR
69
A
LYS
70
n
72
LYS
70
A
TRP
71
n
73
TRP
71
A
ARG
72
n
74
ARG
72
A
LYS
73
n
75
LYS
73
A
LEU
74
n
76
LEU
74
A
VAL
75
n
77
VAL
75
A
ASP
76
n
78
ASP
76
A
PHE
77
n
79
PHE
77
A
ARG
78
n
80
ARG
78
A
GLU
79
n
81
GLU
79
A
LEU
80
n
82
LEU
80
A
ASN
81
n
83
ASN
81
A
LYS
82
n
84
LYS
82
A
ARG
83
n
85
ARG
83
A
THR
84
n
86
THR
84
A
GLN
85
n
87
GLN
85
A
ASP
86
n
88
ASP
86
A
PHE
87
n
89
PHE
87
A
TRP
88
n
90
TRP
88
A
GLU
89
n
91
GLU
89
A
VAL
90
n
92
VAL
90
A
GLN
91
n
93
GLN
91
A
LEU
92
n
94
LEU
92
A
GLY
93
n
95
GLY
93
A
ILE
94
n
96
ILE
94
A
PRO
95
n
97
PRO
95
A
HIS
96
n
98
HIS
96
A
PRO
97
n
99
PRO
97
A
ALA
98
n
100
ALA
98
A
GLY
99
n
101
GLY
99
A
LEU
100
n
102
LEU
100
A
LYS
101
n
103
LYS
101
A
LYS
102
n
104
LYS
102
A
LYS
103
n
105
LYS
103
A
LYS
104
n
106
LYS
104
A
SER
105
n
107
SER
105
A
VAL
106
n
108
VAL
106
A
THR
107
n
109
THR
107
A
VAL
108
n
110
VAL
108
A
LEU
109
n
111
LEU
109
A
ASP
110
n
112
ASP
110
A
VAL
111
n
113
VAL
111
A
GLY
112
n
114
GLY
112
A
ASP
113
n
115
ASP
113
A
ALA
114
n
116
ALA
114
A
TYR
115
n
117
TYR
115
A
PHE
116
n
118
PHE
116
A
SER
117
n
119
SER
117
A
VAL
118
n
120
VAL
118
A
PRO
119
n
121
PRO
119
A
LEU
120
n
122
LEU
120
A
ASP
121
n
123
ASP
121
A
GLU
122
n
124
GLU
122
A
ASP
123
n
125
ASP
123
A
PHE
124
n
126
PHE
124
A
ARG
125
n
127
ARG
125
A
LYS
126
n
128
LYS
126
A
TYR
127
n
129
TYR
127
A
THR
128
n
130
THR
128
A
ALA
129
n
131
ALA
129
A
PHE
130
n
132
PHE
130
A
THR
131
n
133
THR
131
A
ILE
132
n
134
ILE
132
A
PRO
133
n
135
PRO
133
A
SER
134
n
136
SER
134
A
ILE
135
n
137
ILE
135
A
ASN
136
n
138
ASN
136
A
ASN
137
n
139
ASN
137
A
GLU
138
n
140
GLU
138
A
THR
139
n
141
THR
139
A
PRO
140
n
142
PRO
140
A
GLY
141
n
143
GLY
141
A
ILE
142
n
144
ILE
142
A
ARG
143
n
145
ARG
143
A
TYR
144
n
146
TYR
144
A
GLN
145
n
147
GLN
145
A
TYR
146
n
148
TYR
146
A
ASN
147
n
149
ASN
147
A
VAL
148
n
150
VAL
148
A
LEU
149
n
151
LEU
149
A
PRO
150
n
152
PRO
150
A
GLN
151
n
153
GLN
151
A
GLY
152
n
154
GLY
152
A
TRP
153
n
155
TRP
153
A
LYS
154
n
156
LYS
154
A
GLY
155
n
157
GLY
155
A
SER
156
n
158
SER
156
A
PRO
157
n
159
PRO
157
A
ALA
158
n
160
ALA
158
A
ILE
159
n
161
ILE
159
A
PHE
160
n
162
PHE
160
A
GLN
161
n
163
GLN
161
A
SER
162
n
164
SER
162
A
SER
163
n
165
SER
163
A
MET
164
n
166
MET
164
A
THR
165
n
167
THR
165
A
LYS
166
n
168
LYS
166
A
ILE
167
n
169
ILE
167
A
LEU
168
n
170
LEU
168
A
GLU
169
n
171
GLU
169
A
PRO
170
n
172
PRO
170
A
PHE
171
n
173
PHE
171
A
ALA
172
n
174
ALA
172
A
ALA
173
n
175
ALA
173
A
GLN
174
n
176
GLN
174
A
ASN
175
n
177
ASN
175
A
PRO
176
n
178
PRO
176
A
ASP
177
n
179
ASP
177
A
ILE
178
n
180
ILE
178
A
VAL
179
n
181
VAL
179
A
ILE
180
n
182
ILE
180
A
TYR
181
n
183
TYR
181
A
GLN
182
n
184
GLN
182
A
TYR
183
n
185
TYR
183
A
MET
184
n
186
MET
184
A
ASP
185
n
187
ASP
185
A
ASP
186
n
188
ASP
186
A
LEU
187
n
189
LEU
187
A
TYR
188
n
190
TYR
188
A
VAL
189
n
191
VAL
189
A
GLY
190
n
192
GLY
190
A
SER
191
n
193
SER
191
A
ASP
192
n
194
ASP
192
A
LEU
193
n
195
LEU
193
A
GLU
194
n
196
GLU
194
A
ILE
195
n
197
ILE
195
A
GLY
196
n
198
GLY
196
A
GLN
197
n
199
GLN
197
A
HIS
198
n
200
HIS
198
A
ARG
199
n
201
ARG
199
A
THR
200
n
202
THR
200
A
LYS
201
n
203
LYS
201
A
ILE
202
n
204
ILE
202
A
GLU
203
n
205
GLU
203
A
GLU
204
n
206
GLU
204
A
LEU
205
n
207
LEU
205
A
ARG
206
n
208
ARG
206
A
GLN
207
n
209
GLN
207
A
HIS
208
n
210
HIS
208
A
LEU
209
n
211
LEU
209
A
LEU
210
n
212
LEU
210
A
ARG
211
n
213
ARG
211
A
TRP
212
n
214
TRP
212
A
GLY
213
n
215
GLY
213
A
LEU
214
n
216
LEU
214
A
THR
215
n
217
THR
215
A
THR
216
n
218
THR
216
A
PRO
217
n
219
PRO
217
A
ASP
218
n
220
ASP
218
A
LYS
219
n
221
LYS
219
A
LYS
220
n
222
LYS
220
A
HIS
221
n
223
HIS
221
A
GLN
222
n
224
GLN
222
A
LYS
223
n
225
LYS
223
A
GLU
224
n
226
GLU
224
A
PRO
225
n
227
PRO
225
A
PRO
226
n
228
PRO
226
A
PHE
227
n
229
PHE
227
A
LEU
228
n
230
LEU
228
A
TRP
229
n
231
TRP
229
A
MET
230
n
232
MET
230
A
GLY
231
n
233
GLY
231
A
TYR
232
n
234
TYR
232
A
GLU
233
n
235
GLU
233
A
LEU
234
n
236
LEU
234
A
HIS
235
n
237
HIS
235
A
PRO
236
n
238
PRO
236
A
ASP
237
n
239
ASP
237
A
LYS
238
n
240
LYS
238
A
TRP
239
n
241
TRP
239
A
THR
240
n
242
THR
240
A
VAL
241
n
243
VAL
241
A
GLN
242
n
244
GLN
242
A
PRO
243
n
245
PRO
243
A
ILE
244
n
246
ILE
244
A
VAL
245
n
247
VAL
245
A
LEU
246
n
248
LEU
246
A
PRO
247
n
249
PRO
247
A
GLU
248
n
250
GLU
248
A
LYS
249
n
251
LYS
249
A
ASP
250
n
252
ASP
250
A
SER
251
n
253
SER
251
A
TRP
252
n
254
TRP
252
A
THR
253
n
255
THR
253
A
VAL
254
n
256
VAL
254
A
ASN
255
n
257
ASN
255
A
ASP
256
n
258
ASP
256
A
ILE
257
n
259
ILE
257
A
GLN
258
n
260
GLN
258
A
LYS
259
n
261
LYS
259
A
LEU
260
n
262
LEU
260
A
VAL
261
n
263
VAL
261
A
GLY
262
n
264
GLY
262
A
LYS
263
n
265
LYS
263
A
LEU
264
n
266
LEU
264
A
ASN
265
n
267
ASN
265
A
TRP
266
n
268
TRP
266
A
ALA
267
n
269
ALA
267
A
SER
268
n
270
SER
268
A
GLN
269
n
271
GLN
269
A
ILE
270
n
272
ILE
270
A
TYR
271
n
273
TYR
271
A
PRO
272
n
274
PRO
272
A
GLY
273
n
275
GLY
273
A
ILE
274
n
276
ILE
274
A
LYS
275
n
277
LYS
275
A
VAL
276
n
278
VAL
276
A
ARG
277
n
279
ARG
277
A
GLN
278
n
280
GLN
278
A
LEU
279
n
281
LEU
279
A
SER
280
n
282
SER
280
A
LYS
281
n
283
LYS
281
A
LEU
282
n
284
LEU
282
A
LEU
283
n
285
LEU
283
A
ARG
284
n
286
ARG
284
A
GLY
285
n
287
GLY
285
A
THR
286
n
288
THR
286
A
LYS
287
n
289
LYS
287
A
ALA
288
n
290
ALA
288
A
LEU
289
n
291
LEU
289
A
THR
290
n
292
THR
290
A
GLU
291
n
293
GLU
291
A
VAL
292
n
294
VAL
292
A
ILE
293
n
295
ILE
293
A
PRO
294
n
296
PRO
294
A
LEU
295
n
297
LEU
295
A
THR
296
n
298
THR
296
A
GLU
297
n
299
GLU
297
A
GLU
298
n
300
GLU
298
A
ALA
299
n
301
ALA
299
A
GLU
300
n
302
GLU
300
A
LEU
301
n
303
LEU
301
A
GLU
302
n
304
GLU
302
A
LEU
303
n
305
LEU
303
A
ALA
304
n
306
ALA
304
A
GLU
305
n
307
GLU
305
A
ASN
306
n
308
ASN
306
A
ARG
307
n
309
ARG
307
A
GLU
308
n
310
GLU
308
A
ILE
309
n
311
ILE
309
A
LEU
310
n
312
LEU
310
A
LYS
311
n
313
LYS
311
A
GLU
312
n
314
GLU
312
A
PRO
313
n
315
PRO
313
A
VAL
314
n
316
VAL
314
A
HIS
315
n
317
HIS
315
A
GLY
316
n
318
GLY
316
A
VAL
317
n
319
VAL
317
A
TYR
318
n
320
TYR
318
A
TYR
319
n
321
TYR
319
A
ASP
320
n
322
ASP
320
A
PRO
321
n
323
PRO
321
A
SER
322
n
324
SER
322
A
LYS
323
n
325
LYS
323
A
ASP
324
n
326
ASP
324
A
LEU
325
n
327
LEU
325
A
ILE
326
n
328
ILE
326
A
ALA
327
n
329
ALA
327
A
GLU
328
n
330
GLU
328
A
ILE
329
n
331
ILE
329
A
GLN
330
n
332
GLN
330
A
LYS
331
n
333
LYS
331
A
GLN
332
n
334
GLN
332
A
GLY
333
n
335
GLY
333
A
GLN
334
n
336
GLN
334
A
GLY
335
n
337
GLY
335
A
GLN
336
n
338
GLN
336
A
TRP
337
n
339
TRP
337
A
THR
338
n
340
THR
338
A
TYR
339
n
341
TYR
339
A
GLN
340
n
342
GLN
340
A
ILE
341
n
343
ILE
341
A
TYR
342
n
344
TYR
342
A
GLN
343
n
345
GLN
343
A
GLU
344
n
346
GLU
344
A
PRO
345
n
347
PRO
345
A
PHE
346
n
348
PHE
346
A
LYS
347
n
349
LYS
347
A
ASN
348
n
350
ASN
348
A
LEU
349
n
351
LEU
349
A
LYS
350
n
352
LYS
350
A
THR
351
n
353
THR
351
A
GLY
352
n
354
GLY
352
A
LYS
353
n
355
LYS
353
A
TYR
354
n
356
TYR
354
A
ALA
355
n
357
ALA
355
A
ARG
356
n
358
ARG
356
A
MET
357
n
359
MET
357
A
ARG
358
n
360
ARG
358
A
GLY
359
n
361
GLY
359
A
ALA
360
n
362
ALA
360
A
HIS
361
n
363
HIS
361
A
THR
362
n
364
THR
362
A
ASN
363
n
365
ASN
363
A
ASP
364
n
366
ASP
364
A
VAL
365
n
367
VAL
365
A
LYS
366
n
368
LYS
366
A
GLN
367
n
369
GLN
367
A
LEU
368
n
370
LEU
368
A
THR
369
n
371
THR
369
A
GLU
370
n
372
GLU
370
A
ALA
371
n
373
ALA
371
A
VAL
372
n
374
VAL
372
A
GLN
373
n
375
GLN
373
A
LYS
374
n
376
LYS
374
A
ILE
375
n
377
ILE
375
A
THR
376
n
378
THR
376
A
THR
377
n
379
THR
377
A
GLU
378
n
380
GLU
378
A
SER
379
n
381
SER
379
A
ILE
380
n
382
ILE
380
A
VAL
381
n
383
VAL
381
A
ILE
382
n
384
ILE
382
A
TRP
383
n
385
TRP
383
A
GLY
384
n
386
GLY
384
A
LYS
385
n
387
LYS
385
A
THR
386
n
388
THR
386
A
PRO
387
n
389
PRO
387
A
LYS
388
n
390
LYS
388
A
PHE
389
n
391
PHE
389
A
LYS
390
n
392
LYS
390
A
LEU
391
n
393
LEU
391
A
PRO
392
n
394
PRO
392
A
ILE
393
n
395
ILE
393
A
GLN
394
n
396
GLN
394
A
LYS
395
n
397
LYS
395
A
GLU
396
n
398
GLU
396
A
THR
397
n
399
THR
397
A
TRP
398
n
400
TRP
398
A
GLU
399
n
401
GLU
399
A
THR
400
n
402
THR
400
A
TRP
401
n
403
TRP
401
A
TRP
402
n
404
TRP
402
A
THR
403
n
405
THR
403
A
GLU
404
n
406
GLU
404
A
TYR
405
n
407
TYR
405
A
TRP
406
n
408
TRP
406
A
GLN
407
n
409
GLN
407
A
ALA
408
n
410
ALA
408
A
THR
409
n
411
THR
409
A
TRP
410
n
412
TRP
410
A
ILE
411
n
413
ILE
411
A
PRO
412
n
414
PRO
412
A
GLU
413
n
415
GLU
413
A
TRP
414
n
416
TRP
414
A
GLU
415
n
417
GLU
415
A
PHE
416
n
418
PHE
416
A
VAL
417
n
419
VAL
417
A
ASN
418
n
420
ASN
418
A
THR
419
n
421
THR
419
A
PRO
420
n
422
PRO
420
A
PRO
421
n
423
PRO
421
A
LEU
422
n
424
LEU
422
A
VAL
423
n
425
VAL
423
A
LYS
424
n
426
LYS
424
A
LEU
425
n
427
LEU
425
A
TRP
426
n
428
TRP
426
A
TYR
427
n
429
TYR
427
A
GLN
428
n
430
GLN
428
A
LEU
429
n
431
LEU
429
A
GLU
430
n
432
GLU
430
A
LYS
431
n
433
LYS
431
A
GLU
432
n
434
GLU
432
A
PRO
433
n
435
PRO
433
A
ILE
434
n
436
ILE
434
A
VAL
435
n
437
VAL
435
A
GLY
436
n
438
GLY
436
A
ALA
437
n
439
ALA
437
A
GLU
438
n
440
GLU
438
A
THR
439
n
441
THR
439
A
PHE
440
n
442
PHE
440
A
TYR
441
n
443
TYR
441
A
VAL
442
n
444
VAL
442
A
ASP
443
n
445
ASP
443
A
GLY
444
n
446
GLY
444
A
ALA
445
n
447
ALA
445
A
ALA
446
n
448
ALA
446
A
ASN
447
n
449
ASN
447
A
ARG
448
n
450
ARG
448
A
GLU
449
n
451
GLU
449
A
THR
450
n
452
THR
450
A
LYS
451
n
453
LYS
451
A
LEU
452
n
454
LEU
452
A
GLY
453
n
455
GLY
453
A
LYS
454
n
456
LYS
454
A
ALA
455
n
457
ALA
455
A
GLY
456
n
458
GLY
456
A
TYR
457
n
459
TYR
457
A
VAL
458
n
460
VAL
458
A
THR
459
n
461
THR
459
A
ASN
460
n
462
ASN
460
A
LYS
461
n
463
LYS
461
A
GLY
462
n
464
GLY
462
A
ARG
463
n
465
ARG
463
A
GLN
464
n
466
GLN
464
A
LYS
465
n
467
LYS
465
A
VAL
466
n
468
VAL
466
A
VAL
467
n
469
VAL
467
A
PRO
468
n
470
PRO
468
A
LEU
469
n
471
LEU
469
A
THR
470
n
472
THR
470
A
ASN
471
n
473
ASN
471
A
THR
472
n
474
THR
472
A
THR
473
n
475
THR
473
A
ASN
474
n
476
ASN
474
A
GLN
475
n
477
GLN
475
A
LYS
476
n
478
LYS
476
A
THR
477
n
479
THR
477
A
GLU
478
n
480
GLU
478
A
LEU
479
n
481
LEU
479
A
GLN
480
n
482
GLN
480
A
ALA
481
n
483
ALA
481
A
ILE
482
n
484
ILE
482
A
TYR
483
n
485
TYR
483
A
LEU
484
n
486
LEU
484
A
ALA
485
n
487
ALA
485
A
LEU
486
n
488
LEU
486
A
GLN
487
n
489
GLN
487
A
ASP
488
n
490
ASP
488
A
SER
489
n
491
SER
489
A
GLY
490
n
492
GLY
490
A
LEU
491
n
493
LEU
491
A
GLU
492
n
494
GLU
492
A
VAL
493
n
495
VAL
493
A
ASN
494
n
496
ASN
494
A
ILE
495
n
497
ILE
495
A
VAL
496
n
498
VAL
496
A
THR
497
n
499
THR
497
A
ASP
498
n
500
ASP
498
A
SER
499
n
501
SER
499
A
GLN
500
n
502
GLN
500
A
TYR
501
n
503
TYR
501
A
ALA
502
n
504
ALA
502
A
LEU
503
n
505
LEU
503
A
GLY
504
n
506
GLY
504
A
ILE
505
n
507
ILE
505
A
ILE
506
n
508
ILE
506
A
GLN
507
n
509
GLN
507
A
ALA
508
n
510
ALA
508
A
GLN
509
n
511
GLN
509
A
PRO
510
n
512
PRO
510
A
ASP
511
n
513
ASP
511
A
LYS
512
n
514
LYS
512
A
SER
513
n
515
SER
513
A
GLU
514
n
516
GLU
514
A
SER
515
n
517
SER
515
A
GLU
516
n
518
GLU
516
A
LEU
517
n
519
LEU
517
A
VAL
518
n
520
VAL
518
A
ASN
519
n
521
ASN
519
A
GLN
520
n
522
GLN
520
A
ILE
521
n
523
ILE
521
A
ILE
522
n
524
ILE
522
A
GLU
523
n
525
GLU
523
A
GLN
524
n
526
GLN
524
A
LEU
525
n
527
LEU
525
A
ILE
526
n
528
ILE
526
A
LYS
527
n
529
LYS
527
A
LYS
528
n
530
LYS
528
A
GLU
529
n
531
GLU
529
A
LYS
530
n
532
LYS
530
A
VAL
531
n
533
VAL
531
A
TYR
532
n
534
TYR
532
A
LEU
533
n
535
LEU
533
A
ALA
534
n
536
ALA
534
A
TRP
535
n
537
TRP
535
A
VAL
536
n
538
VAL
536
A
PRO
537
n
539
PRO
537
A
ALA
538
n
540
ALA
538
A
HIS
539
n
541
HIS
539
A
LYS
540
n
542
LYS
540
A
GLY
541
n
543
GLY
541
A
ILE
542
n
544
ILE
542
A
GLY
543
n
545
GLY
543
A
GLY
544
n
546
GLY
544
A
ASN
545
n
547
ASN
545
A
GLU
546
n
548
GLU
546
A
GLN
547
n
549
GLN
547
A
VAL
548
n
550
VAL
548
A
n
551
549
A
n
552
550
A
n
553
551
A
n
554
552
A
n
555
553
A
n
556
554
A
n
557
555
A
PRO
1
n
1
PRO
1
B
ILE
2
n
2
ILE
2
B
SER
3
n
3
SER
3
B
PRO
4
n
4
PRO
4
B
ILE
5
n
5
ILE
5
B
GLU
6
n
6
GLU
6
B
THR
7
n
7
THR
7
B
VAL
8
n
8
VAL
8
B
PRO
9
n
9
PRO
9
B
VAL
10
n
10
VAL
10
B
LYS
11
n
11
LYS
11
B
LEU
12
n
12
LEU
12
B
LYS
13
n
13
LYS
13
B
PRO
14
n
14
PRO
14
B
GLY
15
n
15
GLY
15
B
MET
16
n
16
MET
16
B
ASP
17
n
17
ASP
17
B
GLY
18
n
18
GLY
18
B
PRO
19
n
19
PRO
19
B
LYS
20
n
20
LYS
20
B
VAL
21
n
21
VAL
21
B
LYS
22
n
22
LYS
22
B
GLN
23
n
23
GLN
23
B
TRP
24
n
24
TRP
24
B
PRO
25
n
25
PRO
25
B
LEU
26
n
26
LEU
26
B
THR
27
n
27
THR
27
B
GLU
28
n
28
GLU
28
B
GLU
29
n
29
GLU
29
B
LYS
30
n
30
LYS
30
B
ILE
31
n
31
ILE
31
B
LYS
32
n
32
LYS
32
B
ALA
33
n
33
ALA
33
B
LEU
34
n
34
LEU
34
B
VAL
35
n
35
VAL
35
B
GLU
36
n
36
GLU
36
B
ILE
37
n
37
ILE
37
B
CYS
38
n
38
CYS
38
B
THR
39
n
39
THR
39
B
GLU
40
n
40
GLU
40
B
MET
41
n
41
MET
41
B
GLU
42
n
42
GLU
42
B
LYS
43
n
43
LYS
43
B
GLU
44
n
44
GLU
44
B
GLY
45
n
45
GLY
45
B
LYS
46
n
46
LYS
46
B
ILE
47
n
47
ILE
47
B
SER
48
n
48
SER
48
B
LYS
49
n
49
LYS
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
PRO
52
n
52
PRO
52
B
GLU
53
n
53
GLU
53
B
ASN
54
n
54
ASN
54
B
PRO
55
n
55
PRO
55
B
TYR
56
n
56
TYR
56
B
ASN
57
n
57
ASN
57
B
THR
58
n
58
THR
58
B
PRO
59
n
59
PRO
59
B
VAL
60
n
60
VAL
60
B
PHE
61
n
61
PHE
61
B
ALA
62
n
62
ALA
62
B
ILE
63
n
63
ILE
63
B
LYS
64
n
64
LYS
64
B
LYS
65
n
65
LYS
65
B
LYS
66
n
66
LYS
66
B
ASP
67
n
67
ASP
67
B
SER
68
n
68
SER
68
B
THR
69
n
69
THR
69
B
LYS
70
n
70
LYS
70
B
TRP
71
n
71
TRP
71
B
ARG
72
n
72
ARG
72
B
LYS
73
n
73
LYS
73
B
LEU
74
n
74
LEU
74
B
VAL
75
n
75
VAL
75
B
ASP
76
n
76
ASP
76
B
PHE
77
n
77
PHE
77
B
ARG
78
n
78
ARG
78
B
GLU
79
n
79
GLU
79
B
LEU
80
n
80
LEU
80
B
ASN
81
n
81
ASN
81
B
LYS
82
n
82
LYS
82
B
ARG
83
n
83
ARG
83
B
THR
84
n
84
THR
84
B
GLN
85
n
85
GLN
85
B
ASP
86
n
86
ASP
86
B
PHE
87
n
87
PHE
87
B
TRP
88
n
88
TRP
88
B
GLU
89
n
89
GLU
89
B
VAL
90
n
90
VAL
90
B
GLN
91
n
91
GLN
91
B
LEU
92
n
92
LEU
92
B
GLY
93
n
93
GLY
93
B
ILE
94
n
94
ILE
94
B
PRO
95
n
95
PRO
95
B
HIS
96
n
96
HIS
96
B
PRO
97
n
97
PRO
97
B
ALA
98
n
98
ALA
98
B
GLY
99
n
99
GLY
99
B
LEU
100
n
100
LEU
100
B
LYS
101
n
101
LYS
101
B
LYS
102
n
102
LYS
102
B
LYS
103
n
103
LYS
103
B
LYS
104
n
104
LYS
104
B
SER
105
n
105
SER
105
B
VAL
106
n
106
VAL
106
B
THR
107
n
107
THR
107
B
VAL
108
n
108
VAL
108
B
LEU
109
n
109
LEU
109
B
ASP
110
n
110
ASP
110
B
VAL
111
n
111
VAL
111
B
GLY
112
n
112
GLY
112
B
ASP
113
n
113
ASP
113
B
ALA
114
n
114
ALA
114
B
TYR
115
n
115
TYR
115
B
PHE
116
n
116
PHE
116
B
SER
117
n
117
SER
117
B
VAL
118
n
118
VAL
118
B
PRO
119
n
119
PRO
119
B
LEU
120
n
120
LEU
120
B
ASP
121
n
121
ASP
121
B
GLU
122
n
122
GLU
122
B
ASP
123
n
123
ASP
123
B
PHE
124
n
124
PHE
124
B
ARG
125
n
125
ARG
125
B
LYS
126
n
126
LYS
126
B
TYR
127
n
127
TYR
127
B
THR
128
n
128
THR
128
B
ALA
129
n
129
ALA
129
B
PHE
130
n
130
PHE
130
B
THR
131
n
131
THR
131
B
ILE
132
n
132
ILE
132
B
PRO
133
n
133
PRO
133
B
SER
134
n
134
SER
134
B
ILE
135
n
135
ILE
135
B
ASN
136
n
136
ASN
136
B
ASN
137
n
137
ASN
137
B
GLU
138
n
138
GLU
138
B
THR
139
n
139
THR
139
B
PRO
140
n
140
PRO
140
B
GLY
141
n
141
GLY
141
B
ILE
142
n
142
ILE
142
B
ARG
143
n
143
ARG
143
B
TYR
144
n
144
TYR
144
B
GLN
145
n
145
GLN
145
B
TYR
146
n
146
TYR
146
B
ASN
147
n
147
ASN
147
B
VAL
148
n
148
VAL
148
B
LEU
149
n
149
LEU
149
B
PRO
150
n
150
PRO
150
B
GLN
151
n
151
GLN
151
B
GLY
152
n
152
GLY
152
B
TRP
153
n
153
TRP
153
B
LYS
154
n
154
LYS
154
B
GLY
155
n
155
GLY
155
B
SER
156
n
156
SER
156
B
PRO
157
n
157
PRO
157
B
ALA
158
n
158
ALA
158
B
ILE
159
n
159
ILE
159
B
PHE
160
n
160
PHE
160
B
GLN
161
n
161
GLN
161
B
SER
162
n
162
SER
162
B
SER
163
n
163
SER
163
B
MET
164
n
164
MET
164
B
THR
165
n
165
THR
165
B
LYS
166
n
166
LYS
166
B
ILE
167
n
167
ILE
167
B
LEU
168
n
168
LEU
168
B
GLU
169
n
169
GLU
169
B
PRO
170
n
170
PRO
170
B
PHE
171
n
171
PHE
171
B
LYS
172
n
172
LYS
172
B
LYS
173
n
173
LYS
173
B
GLN
174
n
174
GLN
174
B
ASN
175
n
175
ASN
175
B
PRO
176
n
176
PRO
176
B
ASP
177
n
177
ASP
177
B
ILE
178
n
178
ILE
178
B
VAL
179
n
179
VAL
179
B
ILE
180
n
180
ILE
180
B
TYR
181
n
181
TYR
181
B
GLN
182
n
182
GLN
182
B
TYR
183
n
183
TYR
183
B
MET
184
n
184
MET
184
B
ASP
185
n
185
ASP
185
B
ASP
186
n
186
ASP
186
B
LEU
187
n
187
LEU
187
B
TYR
188
n
188
TYR
188
B
VAL
189
n
189
VAL
189
B
GLY
190
n
190
GLY
190
B
SER
191
n
191
SER
191
B
ASP
192
n
192
ASP
192
B
LEU
193
n
193
LEU
193
B
GLU
194
n
194
GLU
194
B
ILE
195
n
195
ILE
195
B
GLY
196
n
196
GLY
196
B
GLN
197
n
197
GLN
197
B
HIS
198
n
198
HIS
198
B
ARG
199
n
199
ARG
199
B
THR
200
n
200
THR
200
B
LYS
201
n
201
LYS
201
B
ILE
202
n
202
ILE
202
B
GLU
203
n
203
GLU
203
B
GLU
204
n
204
GLU
204
B
LEU
205
n
205
LEU
205
B
ARG
206
n
206
ARG
206
B
GLN
207
n
207
GLN
207
B
HIS
208
n
208
HIS
208
B
LEU
209
n
209
LEU
209
B
LEU
210
n
210
LEU
210
B
ARG
211
n
211
ARG
211
B
TRP
212
n
212
TRP
212
B
GLY
213
n
213
GLY
213
B
LEU
214
n
214
LEU
214
B
THR
215
n
215
THR
215
B
THR
216
n
216
THR
216
B
PRO
217
n
217
PRO
217
B
ASP
218
n
218
ASP
218
B
LYS
219
n
219
LYS
219
B
LYS
220
n
220
LYS
220
B
HIS
221
n
221
HIS
221
B
GLN
222
n
222
GLN
222
B
LYS
223
n
223
LYS
223
B
GLU
224
n
224
GLU
224
B
PRO
225
n
225
PRO
225
B
PRO
226
n
226
PRO
226
B
PHE
227
n
227
PHE
227
B
LEU
228
n
228
LEU
228
B
TRP
229
n
229
TRP
229
B
MET
230
n
230
MET
230
B
GLY
231
n
231
GLY
231
B
TYR
232
n
232
TYR
232
B
GLU
233
n
233
GLU
233
B
LEU
234
n
234
LEU
234
B
HIS
235
n
235
HIS
235
B
PRO
236
n
236
PRO
236
B
ASP
237
n
237
ASP
237
B
LYS
238
n
238
LYS
238
B
TRP
239
n
239
TRP
239
B
THR
240
n
240
THR
240
B
VAL
241
n
241
VAL
241
B
GLN
242
n
242
GLN
242
B
PRO
243
n
243
PRO
243
B
ILE
244
n
244
ILE
244
B
VAL
245
n
245
VAL
245
B
LEU
246
n
246
LEU
246
B
PRO
247
n
247
PRO
247
B
GLU
248
n
248
GLU
248
B
LYS
249
n
249
LYS
249
B
ASP
250
n
250
ASP
250
B
SER
251
n
251
SER
251
B
TRP
252
n
252
TRP
252
B
THR
253
n
253
THR
253
B
VAL
254
n
254
VAL
254
B
ASN
255
n
255
ASN
255
B
ASP
256
n
256
ASP
256
B
ILE
257
n
257
ILE
257
B
GLN
258
n
258
GLN
258
B
LYS
259
n
259
LYS
259
B
LEU
260
n
260
LEU
260
B
VAL
261
n
261
VAL
261
B
GLY
262
n
262
GLY
262
B
LYS
263
n
263
LYS
263
B
LEU
264
n
264
LEU
264
B
ASN
265
n
265
ASN
265
B
TRP
266
n
266
TRP
266
B
ALA
267
n
267
ALA
267
B
SER
268
n
268
SER
268
B
GLN
269
n
269
GLN
269
B
ILE
270
n
270
ILE
270
B
TYR
271
n
271
TYR
271
B
PRO
272
n
272
PRO
272
B
GLY
273
n
273
GLY
273
B
ILE
274
n
274
ILE
274
B
LYS
275
n
275
LYS
275
B
VAL
276
n
276
VAL
276
B
ARG
277
n
277
ARG
277
B
GLN
278
n
278
GLN
278
B
LEU
279
n
279
LEU
279
B
SER
280
n
280
SER
280
B
LYS
281
n
281
LYS
281
B
LEU
282
n
282
LEU
282
B
LEU
283
n
283
LEU
283
B
ARG
284
n
284
ARG
284
B
GLY
285
n
285
GLY
285
B
THR
286
n
286
THR
286
B
LYS
287
n
287
LYS
287
B
ALA
288
n
288
ALA
288
B
LEU
289
n
289
LEU
289
B
THR
290
n
290
THR
290
B
GLU
291
n
291
GLU
291
B
VAL
292
n
292
VAL
292
B
ILE
293
n
293
ILE
293
B
PRO
294
n
294
PRO
294
B
LEU
295
n
295
LEU
295
B
THR
296
n
296
THR
296
B
GLU
297
n
297
GLU
297
B
GLU
298
n
298
GLU
298
B
ALA
299
n
299
ALA
299
B
GLU
300
n
300
GLU
300
B
LEU
301
n
301
LEU
301
B
GLU
302
n
302
GLU
302
B
LEU
303
n
303
LEU
303
B
ALA
304
n
304
ALA
304
B
GLU
305
n
305
GLU
305
B
ASN
306
n
306
ASN
306
B
ARG
307
n
307
ARG
307
B
GLU
308
n
308
GLU
308
B
ILE
309
n
309
ILE
309
B
LEU
310
n
310
LEU
310
B
LYS
311
n
311
LYS
311
B
GLU
312
n
312
GLU
312
B
PRO
313
n
313
PRO
313
B
VAL
314
n
314
VAL
314
B
HIS
315
n
315
HIS
315
B
GLY
316
n
316
GLY
316
B
VAL
317
n
317
VAL
317
B
TYR
318
n
318
TYR
318
B
TYR
319
n
319
TYR
319
B
ASP
320
n
320
ASP
320
B
PRO
321
n
321
PRO
321
B
SER
322
n
322
SER
322
B
LYS
323
n
323
LYS
323
B
ASP
324
n
324
ASP
324
B
LEU
325
n
325
LEU
325
B
ILE
326
n
326
ILE
326
B
ALA
327
n
327
ALA
327
B
GLU
328
n
328
GLU
328
B
ILE
329
n
329
ILE
329
B
GLN
330
n
330
GLN
330
B
LYS
331
n
331
LYS
331
B
GLN
332
n
332
GLN
332
B
GLY
333
n
333
GLY
333
B
GLN
334
n
334
GLN
334
B
GLY
335
n
335
GLY
335
B
GLN
336
n
336
GLN
336
B
TRP
337
n
337
TRP
337
B
THR
338
n
338
THR
338
B
TYR
339
n
339
TYR
339
B
GLN
340
n
340
GLN
340
B
ILE
341
n
341
ILE
341
B
TYR
342
n
342
TYR
342
B
GLN
343
n
343
GLN
343
B
GLU
344
n
344
GLU
344
B
PRO
345
n
345
PRO
345
B
PHE
346
n
346
PHE
346
B
LYS
347
n
347
LYS
347
B
ASN
348
n
348
ASN
348
B
LEU
349
n
349
LEU
349
B
LYS
350
n
350
LYS
350
B
THR
351
n
351
THR
351
B
GLY
352
n
352
GLY
352
B
LYS
353
n
353
LYS
353
B
TYR
354
n
354
TYR
354
B
ALA
355
n
355
ALA
355
B
ARG
356
n
356
ARG
356
B
MET
357
n
357
MET
357
B
ARG
358
n
358
ARG
358
B
GLY
359
n
359
GLY
359
B
ALA
360
n
360
ALA
360
B
HIS
361
n
361
HIS
361
B
THR
362
n
362
THR
362
B
ASN
363
n
363
ASN
363
B
ASP
364
n
364
ASP
364
B
VAL
365
n
365
VAL
365
B
LYS
366
n
366
LYS
366
B
GLN
367
n
367
GLN
367
B
LEU
368
n
368
LEU
368
B
THR
369
n
369
THR
369
B
GLU
370
n
370
GLU
370
B
ALA
371
n
371
ALA
371
B
VAL
372
n
372
VAL
372
B
GLN
373
n
373
GLN
373
B
LYS
374
n
374
LYS
374
B
ILE
375
n
375
ILE
375
B
THR
376
n
376
THR
376
B
THR
377
n
377
THR
377
B
GLU
378
n
378
GLU
378
B
SER
379
n
379
SER
379
B
ILE
380
n
380
ILE
380
B
VAL
381
n
381
VAL
381
B
ILE
382
n
382
ILE
382
B
TRP
383
n
383
TRP
383
B
GLY
384
n
384
GLY
384
B
LYS
385
n
385
LYS
385
B
THR
386
n
386
THR
386
B
PRO
387
n
387
PRO
387
B
LYS
388
n
388
LYS
388
B
PHE
389
n
389
PHE
389
B
LYS
390
n
390
LYS
390
B
LEU
391
n
391
LEU
391
B
PRO
392
n
392
PRO
392
B
ILE
393
n
393
ILE
393
B
GLN
394
n
394
GLN
394
B
LYS
395
n
395
LYS
395
B
GLU
396
n
396
GLU
396
B
THR
397
n
397
THR
397
B
TRP
398
n
398
TRP
398
B
GLU
399
n
399
GLU
399
B
THR
400
n
400
THR
400
B
TRP
401
n
401
TRP
401
B
TRP
402
n
402
TRP
402
B
THR
403
n
403
THR
403
B
GLU
404
n
404
GLU
404
B
TYR
405
n
405
TYR
405
B
TRP
406
n
406
TRP
406
B
GLN
407
n
407
GLN
407
B
ALA
408
n
408
ALA
408
B
THR
409
n
409
THR
409
B
TRP
410
n
410
TRP
410
B
ILE
411
n
411
ILE
411
B
PRO
412
n
412
PRO
412
B
GLU
413
n
413
GLU
413
B
TRP
414
n
414
TRP
414
B
GLU
415
n
415
GLU
415
B
PHE
416
n
416
PHE
416
B
VAL
417
n
417
VAL
417
B
ASN
418
n
418
ASN
418
B
THR
419
n
419
THR
419
B
PRO
420
n
420
PRO
420
B
PRO
421
n
421
PRO
421
B
LEU
422
n
422
LEU
422
B
VAL
423
n
423
VAL
423
B
LYS
424
n
424
LYS
424
B
LEU
425
n
425
LEU
425
B
TRP
426
n
426
TRP
426
B
TYR
427
n
427
TYR
427
B
GLN
428
n
428
GLN
428
B
author_and_software_defined_assembly
PISA
2
dimeric
4850
-23
49540
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
48
A
N
SER
50
A
O
GLN
145
A
O
GLN
147
A
O
ILE
142
A
O
ILE
144
A
N
ILE
132
A
N
ILE
134
A
N
PHE
61
A
N
PHE
63
A
O
LEU
74
A
O
LEU
76
A
N
LEU
109
A
N
LEU
111
A
O
LEU
187
A
O
LEU
189
A
O
TYR
188
A
O
TYR
190
A
N
TYR
181
A
N
TYR
183
A
N
TRP
229
A
N
TRP
231
A
O
TYR
232
A
O
TYR
234
A
N
GLU
233
A
N
GLU
235
A
O
THR
240
A
O
THR
242
A
O
LYS
350
A
O
LYS
352
A
N
ILE
341
A
N
ILE
343
A
O
THR
338
A
O
THR
340
A
N
GLN
330
A
N
GLN
332
A
N
ALA
327
A
N
ALA
329
A
O
LYS
388
A
O
LYS
390
A
N
LEU
391
A
N
LEU
393
A
O
GLU
415
A
O
GLU
417
A
N
THR
362
A
N
THR
364
A
O
LYS
512
A
O
LYS
514
A
O
VAL
467
A
O
VAL
469
A
N
ALA
455
A
N
ALA
457
A
O
GLY
456
A
O
GLY
458
A
N
ASP
443
A
N
ASP
445
A
N
PHE
440
A
N
PHE
442
A
O
ASN
494
A
O
ASN
496
A
N
ILE
495
A
N
ILE
497
A
O
TYR
532
A
O
TYR
534
B
N
SER
48
B
N
SER
48
B
O
GLN
145
B
O
GLN
145
B
O
ILE
142
B
O
ILE
142
B
N
ILE
132
B
N
ILE
132
B
N
ILE
63
B
N
ILE
63
B
O
ARG
72
B
O
ARG
72
B
N
TYR
181
B
N
TYR
181
B
O
TYR
188
B
O
TYR
188
B
O
VAL
189
B
O
VAL
189
B
N
THR
107
B
N
THR
107
B
N
VAL
106
B
N
VAL
106
B
O
LEU
234
B
O
LEU
234
B
O
LYS
350
B
O
LYS
350
B
N
ILE
341
B
N
ILE
341
B
O
THR
338
B
O
THR
338
B
N
GLN
330
B
N
GLN
330
B
N
ALA
327
B
N
ALA
327
B
O
LYS
390
B
O
LYS
390
B
N
LEU
391
B
N
LEU
391
B
O
GLU
415
B
O
GLU
415
1
A
MET
-1
A
MET
1
1
Y
1
A
ASP
549
A
ASP
551
1
Y
1
A
LYS
550
A
LYS
552
1
Y
1
A
LEU
551
A
LEU
553
1
Y
1
A
VAL
552
A
VAL
554
1
Y
1
A
SER
553
A
SER
555
1
Y
1
A
ALA
554
A
ALA
556
1
Y
1
A
GLY
555
A
GLY
557
1
Y
1
B
B
O
O
ASN
HOH
137
505
2.15
1
A
B
NE2
O
GLN
HOH
91
505
2.19
1
A
A
LYS
HIS
220
221
-139.98
1
B
B
THR
PRO
419
420
-147.80
1
9.46
1.50
119.30
128.76
B
B
B
C
N
CA
HIS
PRO
PRO
96
97
97
Y
1
13.62
1.50
119.30
132.92
B
B
B
C
N
CA
PRO
PRO
PRO
420
421
421
Y
1
A
A
O
O
HOH
HOH
718
718
2.16
1_555
2_756
1
A
PRO
4
-90.30
49.72
1
A
LEU
26
-133.06
-68.60
1
A
ASN
54
31.47
56.07
1
A
ASP
67
58.54
76.76
1
A
SER
68
-59.65
-3.60
1
A
VAL
90
-82.14
-77.82
1
A
LEU
92
-63.77
-73.84
1
A
ASN
136
45.32
-146.44
1
A
ASN
137
42.81
24.03
1
A
GLU
138
39.81
38.42
1
A
MET
184
53.08
-119.37
1
A
LYS
220
59.90
-88.86
1
A
HIS
221
108.95
0.63
1
A
GLN
222
57.42
-113.84
1
A
PHE
227
62.27
64.02
1
A
ILE
270
-125.32
-58.76
1
A
THR
286
-54.56
-8.23
1
A
GLN
343
-127.68
-52.82
1
A
PRO
412
-69.81
-171.08
1
A
LEU
452
-83.06
-77.14
1
A
HIS
539
67.59
-5.14
1
A
ILE
542
-58.70
-75.24
1
B
GLU
6
-78.51
-73.86
1
B
LYS
65
-48.65
-73.47
1
B
LYS
66
-126.83
-79.53
1
B
THR
84
-130.33
-64.52
1
B
GLU
89
-143.99
-53.71
1
B
MET
184
53.00
-118.89
1
B
GLN
222
68.80
-124.46
1
B
ILE
270
-99.72
-62.62
1
B
PHE
346
69.85
-4.97
1
B
ARG
356
-62.00
-71.32
1
B
ALA
360
58.29
19.63
1
B
HIS
361
-135.11
-63.69
381.260
164.0865
87.890
0.2650
0.2324
0.2343
0.2324
2.90
41.7220
1999
35694
34760
5.7500
99.7500
1.000
0.200
0.7413
0.3800
Random
1
1.890
1.890
MOLECULAR REPLACEMENT
31.9700
0.9000
1.1100
PDB Code 1S9E
Maximum Likelihood (ML)
FLAT BULK SOLVENT MODEL
2.90
41.7220
49
8082
30
0
8003
0.003
8258
0.876
11226
0.065
1211
0.004
1413
13.534
3137
0.3640
0.3317
2.9706
138
2252
2390
2252
14
98.0000
0.3540
0.3176
3.0509
143
2339
2482
2339
14
100.0000
0.3737
0.2984
3.1407
141
2334
2475
2334
14
100.0000
0.3666
0.2726
3.2420
140
2294
2434
2294
14
100.0000
0.2848
0.2804
3.3578
143
2342
2485
2342
14
100.0000
0.3116
0.2611
3.4922
144
2354
2498
2354
14
100.0000
0.2941
0.2636
3.6510
141
2329
2470
2329
14
100.0000
0.2856
0.2515
3.8434
144
2339
2483
2339
14
100.0000
0.2912
0.2310
4.0840
142
2338
2480
2338
14
100.0000
0.2302
0.2060
4.3990
142
2339
2481
2339
14
100.0000
0.2396
0.2011
4.8411
144
2349
2493
2349
14
100.0000
0.2620
0.2121
5.5403
145
2359
2504
2359
14
100.0000
0.2629
0.2424
6.9749
146
2393
2539
2393
14
100.0000
0.2094
0.2004
41.7264
146
2400
2546
2400
14
99.0000
79.02
2.900
41.722
4H4O
34778
34778
1.50
1.50
0.072
0.073
1.576
1
10.200
3.800
99.900
0.596
2.900
2.950
2.6
1693
0.470
0.826
1
3.700
99.900
0.517
2.950
3.000
1740
0.839
1
3.700
100.000
0.477
3.000
3.060
1711
0.868
1
3.800
100.000
0.389
3.060
3.120
1708
0.874
1
3.800
100.000
0.319
3.120
3.190
1746
0.998
1
3.800
100.000
0.300
3.190
3.270
1721
1.661
1
3.800
100.000
0.218
3.270
3.350
1744
1.060
1
3.800
100.000
0.191
3.350
3.440
1703
1.177
1
3.800
100.000
0.161
3.440
3.540
1731
1.415
1
3.800
100.000
0.128
3.540
3.650
1756
1.291
1
3.800
100.000
0.141
3.650
3.780
1731
2.585
1
3.800
100.000
0.103
3.780
3.940
1747
2.047
1
3.800
100.000
0.076
3.940
4.110
1715
1.604
1
3.800
99.900
0.066
4.110
4.330
1764
1.792
1
3.800
100.000
0.060
4.330
4.600
1735
1.948
1
3.800
99.900
0.061
4.600
4.960
1754
2.200
1
3.800
100.000
0.065
4.960
5.460
1745
2.607
1
3.800
100.000
0.066
5.460
6.240
1755
2.573
1
3.700
100.000
0.043
6.240
7.860
1784
1.684
1
3.600
99.900
0.028
7.860
50.000
1795
1.419
1
3.600
98.400
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8_1069
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
CBASS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
Crystal Structure of HIV-1 Reverse Transcriptase (RT) in Complex with (E)-3-(3-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)- 4-fluorophenoxy)-5-fluorophenyl)acrylonitrile (JLJ506), A Non-nucleoside inhibitor
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
THR
27
A
THR
29
HELX_P
A
GLU
44
A
GLU
46
1
1
18
A
PHE
77
A
PHE
79
HELX_P
A
THR
84
A
THR
86
1
2
8
A
HIS
96
A
HIS
98
HELX_P
A
LEU
100
A
LEU
102
5
3
5
A
ALA
114
A
ALA
116
HELX_P
A
VAL
118
A
VAL
120
5
4
5
A
ASP
121
A
ASP
123
HELX_P
A
ALA
129
A
ALA
131
5
5
9
A
GLY
155
A
GLY
157
HELX_P
A
ASN
175
A
ASN
177
1
6
21
A
GLU
194
A
GLU
196
HELX_P
A
TRP
212
A
TRP
214
1
7
19
A
THR
253
A
THR
255
HELX_P
A
GLN
269
A
GLN
271
1
8
17
A
VAL
276
A
VAL
278
HELX_P
A
LEU
282
A
LEU
284
1
9
7
A
LEU
283
A
LEU
285
HELX_P
A
GLY
285
A
GLY
287
5
10
3
A
THR
296
A
THR
298
HELX_P
A
LEU
310
A
LEU
312
1
11
15
A
ASN
363
A
ASN
365
HELX_P
A
GLY
384
A
GLY
386
1
12
22
A
GLN
394
A
GLN
396
HELX_P
A
TYR
405
A
TYR
407
1
13
12
A
THR
473
A
THR
475
HELX_P
A
SER
489
A
SER
491
1
14
17
A
SER
499
A
SER
501
HELX_P
A
ALA
508
A
ALA
510
1
15
10
A
SER
515
A
SER
517
HELX_P
A
LYS
528
A
LYS
530
1
16
14
B
THR
27
B
THR
27
HELX_P
B
GLU
44
B
GLU
44
1
17
18
B
PHE
77
B
PHE
77
HELX_P
B
THR
84
B
THR
84
1
18
8
B
GLY
99
B
GLY
99
HELX_P
B
LYS
103
B
LYS
103
5
19
5
B
GLY
112
B
GLY
112
HELX_P
B
VAL
118
B
VAL
118
5
20
7
B
PHE
124
B
PHE
124
HELX_P
B
ALA
129
B
ALA
129
5
21
6
B
SER
134
B
SER
134
HELX_P
B
GLU
138
B
GLU
138
5
22
5
B
LYS
154
B
LYS
154
HELX_P
B
ASN
175
B
ASN
175
1
23
22
B
GLU
194
B
GLU
194
HELX_P
B
TRP
212
B
TRP
212
1
24
19
B
HIS
235
B
HIS
235
HELX_P
B
TRP
239
B
TRP
239
5
25
5
B
THR
253
B
THR
253
HELX_P
B
SER
268
B
SER
268
1
26
16
B
VAL
276
B
VAL
276
HELX_P
B
LYS
281
B
LYS
281
1
27
6
B
LEU
282
B
LEU
282
HELX_P
B
ARG
284
B
ARG
284
5
28
3
B
THR
296
B
THR
296
HELX_P
B
LYS
311
B
LYS
311
1
29
16
B
ASN
363
B
ASN
363
HELX_P
B
GLY
384
B
GLY
384
1
30
22
B
GLN
394
B
GLN
394
HELX_P
B
TRP
402
B
TRP
402
1
31
9
B
THR
403
B
THR
403
HELX_P
B
TYR
405
B
TYR
405
5
32
3
B
PRO
421
B
PRO
421
HELX_P
B
GLN
428
B
GLN
428
5
33
8
Hydrolase/Hydrolase inhibitor
Polymerase, Transferase, Hydrolase/inhibitor, Rnase, Hydrolase-Hydrolase inhibitor complex
A
PRO
25
A
PRO
27
1
A
LEU
26
A
LEU
28
-4.88
A
PRO
225
A
PRO
227
1
A
PRO
226
A
PRO
228
-7.50
A
PRO
226
A
PRO
228
1
A
PHE
227
A
PHE
229
21.15
A
PRO
420
A
PRO
422
1
A
PRO
421
A
PRO
423
2.52
POL_HV1B1
UNP
1
600
P03366
PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFREL
NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWT
VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYD
PSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET
WWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQ
AIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG
POL_HV1B1
UNP
2
600
P03366
PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFREL
NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF
QSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWT
VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYD
PSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET
WWTEYWQATWIPEWEFVNTPPLVKLWYQ
600
1154
4H4O
1
555
P03366
A
1
3
557
600
1027
4H4O
1
428
P03366
B
2
1
428
1
initiating methionine
MET
-1
4H4O
A
P03366
UNP
1
1
expression tag
VAL
0
4H4O
A
P03366
UNP
2
1
LYS
engineered mutation
ALA
172
4H4O
A
P03366
UNP
771
174
1
LYS
engineered mutation
ALA
173
4H4O
A
P03366
UNP
772
175
1
CYS
engineered mutation
SER
280
4H4O
A
P03366
UNP
879
282
2
CYS
engineered mutation
SER
280
4H4O
B
P03366
UNP
879
280
3
2
3
3
5
2
5
3
2
4
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
A
ILE
47
A
ILE
49
A
LYS
49
A
LYS
51
A
ILE
142
A
ILE
144
A
TYR
146
A
TYR
148
A
PHE
130
A
PHE
132
A
ILE
132
A
ILE
134
A
VAL
60
A
VAL
62
A
LYS
64
A
LYS
66
A
TRP
71
A
TRP
73
A
VAL
75
A
VAL
77
A
SER
105
A
SER
107
A
ASP
110
A
ASP
112
A
ASP
186
A
ASP
188
A
SER
191
A
SER
193
A
ILE
178
A
ILE
180
A
TYR
183
A
TYR
185
A
LEU
228
A
LEU
230
A
TRP
229
A
TRP
231
A
TYR
232
A
TYR
234
A
LEU
234
A
LEU
236
A
TRP
239
A
TRP
241
A
VAL
241
A
VAL
243
A
LYS
350
A
LYS
352
A
ALA
355
A
ALA
357
A
GLN
336
A
GLN
338
A
TYR
342
A
TYR
344
A
ILE
326
A
ILE
328
A
LYS
331
A
LYS
333
A
LYS
388
A
LYS
390
A
LEU
391
A
LEU
393
A
TRP
414
A
TRP
416
A
PHE
416
A
PHE
418
A
HIS
361
A
HIS
363
A
THR
362
A
THR
364
A
LYS
512
A
LYS
514
A
SER
513
A
SER
515
A
GLN
464
A
GLN
466
A
PRO
468
A
PRO
470
A
LYS
454
A
LYS
456
A
THR
459
A
THR
461
A
GLU
438
A
GLU
440
A
ALA
445
A
ALA
447
A
GLU
492
A
GLU
494
A
THR
497
A
THR
499
A
LYS
530
A
LYS
532
A
TRP
535
A
TRP
537
B
ILE
47
B
ILE
47
B
LYS
49
B
LYS
49
B
ILE
142
B
ILE
142
B
TYR
146
B
TYR
146
B
PHE
130
B
PHE
130
B
ILE
132
B
ILE
132
B
VAL
60
B
VAL
60
B
LYS
64
B
LYS
64
B
TRP
71
B
TRP
71
B
VAL
75
B
VAL
75
B
VAL
179
B
VAL
179
B
TYR
183
B
TYR
183
B
ASP
186
B
ASP
186
B
SER
191
B
SER
191
B
SER
105
B
SER
105
B
ASP
110
B
ASP
110
B
GLU
233
B
GLU
233
B
LEU
234
B
LEU
234
B
ASN
348
B
ASN
348
B
ALA
355
B
ALA
355
B
GLN
336
B
GLN
336
B
TYR
342
B
TYR
342
B
ILE
326
B
ILE
326
B
GLY
333
B
GLY
333
B
LYS
388
B
LYS
388
B
LEU
391
B
LEU
391
B
GLU
413
B
GLU
413
B
PHE
416
B
PHE
416
BINDING SITE FOR RESIDUE 506 A 601
A
506
601
Software
14
A
PRO
95
A
PRO
97
14
1_555
A
LEU
100
A
LEU
102
14
1_555
A
LYS
101
A
LYS
103
14
1_555
A
LYS
102
A
LYS
104
14
1_555
A
LYS
103
A
LYS
105
14
1_555
A
VAL
106
A
VAL
108
14
1_555
A
VAL
108
A
VAL
110
14
1_555
A
VAL
179
A
VAL
181
14
1_555
A
TYR
188
A
TYR
190
14
1_555
A
GLY
190
A
GLY
192
14
1_555
A
TRP
229
A
TRP
231
14
1_555
A
LEU
234
A
LEU
236
14
1_555
A
PRO
236
A
PRO
238
14
1_555
A
TYR
318
A
TYR
320
14
1_555
5
C 1 2 1