0.009747
0.005628
0.000000
0.000000
0.011255
0.000000
0.000000
0.000000
0.007743
0.00000
0.00000
0.00000
Zaehringer, F.
Schirmer, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
102.593
102.593
129.156
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C20 H24 N10 O14 P2
690.411
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
c-di-GMP; Cyclic diguanosine monophosphate
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H16 N5 O13 P3 S
539.246
GUANOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
P
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
C
N
102
R
C
N
103
N
O
N
104
S
C
N
105
N
O
N
106
R
C
N
107
N
O
N
108
R
C
Y
109
N
N
Y
110
N
C
Y
111
N
N
Y
112
N
C
N
113
N
C
N
114
N
O
N
115
N
N
N
116
N
C
N
117
N
N
N
118
N
N
Y
119
N
C
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
R
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
S
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
C
Y
160
N
C
Y
161
N
C
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
N
Y
166
N
N
Y
167
N
C
Y
168
N
N
N
169
R
C
N
170
R
C
N
171
N
O
N
172
S
C
N
173
N
O
N
174
N
O
N
175
R
C
N
176
N
C
N
177
N
O
N
178
R
P
N
179
N
S
N
180
N
O
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
P
N
187
N
O
N
188
N
O
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
O
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
O
N
234
N
O
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
N
C
N
247
N
C
N
248
N
O
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
Y
260
N
C
Y
261
N
N
Y
262
N
C
Y
263
N
C
Y
264
N
N
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
S
C
N
281
N
C
N
282
N
C
N
283
N
C
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
N
N
321
S
C
N
322
N
C
N
323
N
O
N
324
N
C
N
325
N
C
N
326
N
C
N
327
N
C
N
328
N
N
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
S
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
MG
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
N
411
N
O
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
N
N
421
S
C
N
422
N
C
N
423
N
O
N
424
R
C
N
425
N
O
N
426
N
C
N
427
N
O
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
N
N
438
S
C
N
439
N
C
N
440
N
O
N
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
N
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
Y
450
N
C
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
N
475
N
O
N
476
N
O
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
N
493
N
C
N
494
N
C
N
495
N
O
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
Y
84
N
sing
Y
85
N
sing
Y
86
N
doub
Y
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
Y
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
Y
110
N
sing
Y
111
N
doub
Y
112
N
sing
Y
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
Y
161
N
doub
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
Y
167
N
sing
Y
168
N
doub
Y
169
N
sing
Y
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
Y
266
N
sing
Y
267
N
doub
Y
268
N
doub
N
269
N
sing
Y
270
N
sing
N
271
N
sing
Y
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
doub
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
Y
441
N
doub
Y
442
N
sing
Y
443
N
sing
N
444
N
sing
Y
445
N
doub
Y
446
N
sing
Y
447
N
sing
N
448
N
sing
Y
449
N
sing
Y
450
N
doub
N
451
N
sing
Y
452
N
doub
N
453
N
sing
Y
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
doub
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
Y
469
N
doub
Y
470
N
sing
Y
471
N
sing
N
472
N
sing
Y
473
N
doub
N
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
doub
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
UK
Structure
STRUE6
2005
0969-2126
21
1149
1157
10.1016/j.str.2013.04.026
23769666
Structure and signaling mechanism of a zinc-sensory diguanylate cyclase.
2013
10.2210/pdb4h54/pdb
pdb_00004h54
100
1
CCD
2011-08-14
MARMOSAIC 225 mm CCD
Bartels Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
X06DA
SLS
1.0000
SYNCHROTRON
SLS BEAMLINE X06DA
34884.426
Diguanylate cyclase YdeH
2.7.7.65
C52A
2
man
polymer
65.409
ZINC ION
2
syn
non-polymer
539.246
GUANOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE
4
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
690.411
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
1
syn
non-polymer
DgcZ, DGC
no
no
AIKKTTEIDAILLNLNKAIDAHYQWLVSMFHSVVARDASKPEITDNHSYGLAQFGRWIDHLGPLDNDELPYVRLMDSAHQ
HMHNCGRELMLAIVENHWQDAHFDAFQEGLLSFTAALTDYKIYLLTIRSNMDVLTGLPGRRVLDESFDHQLRNAEPLNLY
LMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITH
SEGHINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCMFIDEQNVINRVLEHHHHHH
AIKKTTEIDAILLNLNKAIDAHYQWLVSMFHSVVARDASKPEITDNHSYGLAQFGRWIDHLGPLDNDELPYVRLMDSAHQ
HMHNCGRELMLAIVENHWQDAHFDAFQEGLLSFTAALTDYKIYLLTIRSNMDVLTGLPGRRVLDESFDHQLRNAEPLNLY
LMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITH
SEGHINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCMFIDEQNVINRVLEHHHHHH
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
K12
sample
b1535, JW1528, ydeG, ydeH
83333
Escherichia coli
511693
Escherichia coli
Rosetta
plasmid
pET28b
1
2.81
56.22
VAPOR DIFFUSION, HANGING DROP
8.0
200 mM calcium acetate, 20.0% PEG4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
Structure summary
1
0
2013-07-03
1
1
2013-07-17
1
2
2023-09-20
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CZB domain of DgcZ
GGDEF domain of DgcZ
RCSB
Y
RCSB
2012-09-18
REL
REL
ZN
ZINC ION
GAV
GUANOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE
MG
MAGNESIUM ION
C2E
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)
3T90
PDB ENTRIES 3T90 AND 3TVK
PDB
experimental model
3TVK
PDB ENTRIES 3T90 AND 3TVK
PDB
experimental model
ZN
400
2
ZN
ZN
401
A
GAV
600
3
GAV
GAV
402
A
MG
601
4
MG
MG
403
A
GAV
700
3
GAV
GAV
404
A
C2E
701
5
C2E
C2E
405
A
ZN
400
2
ZN
ZN
401
B
GAV
600
3
GAV
GAV
402
B
MG
601
4
MG
MG
403
B
GAV
700
3
GAV
GAV
404
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
THR
5
n
5
THR
5
A
THR
6
n
6
THR
6
A
GLU
7
n
7
GLU
7
A
ILE
8
n
8
ILE
8
A
ASP
9
n
9
ASP
9
A
ALA
10
n
10
ALA
10
A
ILE
11
n
11
ILE
11
A
LEU
12
n
12
LEU
12
A
LEU
13
n
13
LEU
13
A
ASN
14
n
14
ASN
14
A
LEU
15
n
15
LEU
15
A
ASN
16
n
16
ASN
16
A
LYS
17
n
17
LYS
17
A
ALA
18
n
18
ALA
18
A
ILE
19
n
19
ILE
19
A
ASP
20
n
20
ASP
20
A
ALA
21
n
21
ALA
21
A
HIS
22
n
22
HIS
22
A
TYR
23
n
23
TYR
23
A
GLN
24
n
24
GLN
24
A
TRP
25
n
25
TRP
25
A
LEU
26
n
26
LEU
26
A
VAL
27
n
27
VAL
27
A
SER
28
n
28
SER
28
A
MET
29
n
29
MET
29
A
PHE
30
n
30
PHE
30
A
HIS
31
n
31
HIS
31
A
SER
32
n
32
SER
32
A
VAL
33
n
33
VAL
33
A
VAL
34
n
34
VAL
34
A
ALA
35
n
35
ALA
35
A
n
36
36
A
n
37
37
A
n
38
38
A
n
39
39
A
n
40
40
A
n
41
41
A
n
42
42
A
n
43
43
A
n
44
44
A
n
45
45
A
n
46
46
A
n
47
47
A
n
48
48
A
n
49
49
A
n
50
50
A
n
51
51
A
n
52
52
A
n
53
53
A
PHE
54
n
54
PHE
54
A
GLY
55
n
55
GLY
55
A
ARG
56
n
56
ARG
56
A
TRP
57
n
57
TRP
57
A
ILE
58
n
58
ILE
58
A
ASP
59
n
59
ASP
59
A
HIS
60
n
60
HIS
60
A
LEU
61
n
61
LEU
61
A
GLY
62
n
62
GLY
62
A
PRO
63
n
63
PRO
63
A
LEU
64
n
64
LEU
64
A
ASP
65
n
65
ASP
65
A
ASN
66
n
66
ASN
66
A
ASP
67
n
67
ASP
67
A
GLU
68
n
68
GLU
68
A
LEU
69
n
69
LEU
69
A
PRO
70
n
70
PRO
70
A
TYR
71
n
71
TYR
71
A
VAL
72
n
72
VAL
72
A
ARG
73
n
73
ARG
73
A
LEU
74
n
74
LEU
74
A
MET
75
n
75
MET
75
A
ASP
76
n
76
ASP
76
A
SER
77
n
77
SER
77
A
ALA
78
n
78
ALA
78
A
HIS
79
n
79
HIS
79
A
GLN
80
n
80
GLN
80
A
HIS
81
n
81
HIS
81
A
MET
82
n
82
MET
82
A
HIS
83
n
83
HIS
83
A
ASN
84
n
84
ASN
84
A
CYS
85
n
85
CYS
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
GLU
88
n
88
GLU
88
A
LEU
89
n
89
LEU
89
A
MET
90
n
90
MET
90
A
LEU
91
n
91
LEU
91
A
ALA
92
n
92
ALA
92
A
ILE
93
n
93
ILE
93
A
VAL
94
n
94
VAL
94
A
GLU
95
n
95
GLU
95
A
ASN
96
n
96
ASN
96
A
HIS
97
n
97
HIS
97
A
TRP
98
n
98
TRP
98
A
GLN
99
n
99
GLN
99
A
ASP
100
n
100
ASP
100
A
ALA
101
n
101
ALA
101
A
HIS
102
n
102
HIS
102
A
PHE
103
n
103
PHE
103
A
ASP
104
n
104
ASP
104
A
ALA
105
n
105
ALA
105
A
PHE
106
n
106
PHE
106
A
GLN
107
n
107
GLN
107
A
GLU
108
n
108
GLU
108
A
GLY
109
n
109
GLY
109
A
LEU
110
n
110
LEU
110
A
LEU
111
n
111
LEU
111
A
SER
112
n
112
SER
112
A
PHE
113
n
113
PHE
113
A
THR
114
n
114
THR
114
A
ALA
115
n
115
ALA
115
A
ALA
116
n
116
ALA
116
A
LEU
117
n
117
LEU
117
A
THR
118
n
118
THR
118
A
ASP
119
n
119
ASP
119
A
TYR
120
n
120
TYR
120
A
LYS
121
n
121
LYS
121
A
ILE
122
n
122
ILE
122
A
TYR
123
n
123
TYR
123
A
LEU
124
n
124
LEU
124
A
LEU
125
n
125
LEU
125
A
THR
126
n
126
THR
126
A
ILE
127
n
127
ILE
127
A
ARG
128
n
128
ARG
128
A
SER
129
n
129
SER
129
A
ASN
130
n
130
ASN
130
A
MET
131
n
131
MET
131
A
ASP
132
n
132
ASP
132
A
VAL
133
n
133
VAL
133
A
LEU
134
n
134
LEU
134
A
THR
135
n
135
THR
135
A
GLY
136
n
136
GLY
136
A
LEU
137
n
137
LEU
137
A
PRO
138
n
138
PRO
138
A
GLY
139
n
139
GLY
139
A
ARG
140
n
140
ARG
140
A
ARG
141
n
141
ARG
141
A
VAL
142
n
142
VAL
142
A
LEU
143
n
143
LEU
143
A
ASP
144
n
144
ASP
144
A
GLU
145
n
145
GLU
145
A
SER
146
n
146
SER
146
A
PHE
147
n
147
PHE
147
A
ASP
148
n
148
ASP
148
A
HIS
149
n
149
HIS
149
A
GLN
150
n
150
GLN
150
A
LEU
151
n
151
LEU
151
A
ARG
152
n
152
ARG
152
A
ASN
153
n
153
ASN
153
A
ALA
154
n
154
ALA
154
A
GLU
155
n
155
GLU
155
A
PRO
156
n
156
PRO
156
A
LEU
157
n
157
LEU
157
A
ASN
158
n
158
ASN
158
A
LEU
159
n
159
LEU
159
A
TYR
160
n
160
TYR
160
A
LEU
161
n
161
LEU
161
A
MET
162
n
162
MET
162
A
LEU
163
n
163
LEU
163
A
LEU
164
n
164
LEU
164
A
ASP
165
n
165
ASP
165
A
ILE
166
n
166
ILE
166
A
ASP
167
n
167
ASP
167
A
ARG
168
n
168
ARG
168
A
PHE
169
n
169
PHE
169
A
LYS
170
n
170
LYS
170
A
LEU
171
n
171
LEU
171
A
VAL
172
n
172
VAL
172
A
ASN
173
n
173
ASN
173
A
ASP
174
n
174
ASP
174
A
THR
175
n
175
THR
175
A
TYR
176
n
176
TYR
176
A
GLY
177
n
177
GLY
177
A
HIS
178
n
178
HIS
178
A
LEU
179
n
179
LEU
179
A
ILE
180
n
180
ILE
180
A
GLY
181
n
181
GLY
181
A
ASP
182
n
182
ASP
182
A
VAL
183
n
183
VAL
183
A
VAL
184
n
184
VAL
184
A
LEU
185
n
185
LEU
185
A
ARG
186
n
186
ARG
186
A
THR
187
n
187
THR
187
A
LEU
188
n
188
LEU
188
A
ALA
189
n
189
ALA
189
A
THR
190
n
190
THR
190
A
TYR
191
n
191
TYR
191
A
LEU
192
n
192
LEU
192
A
ALA
193
n
193
ALA
193
A
SER
194
n
194
SER
194
A
TRP
195
n
195
TRP
195
A
THR
196
n
196
THR
196
A
ARG
197
n
197
ARG
197
A
ASP
198
n
198
ASP
198
A
TYR
199
n
199
TYR
199
A
GLU
200
n
200
GLU
200
A
THR
201
n
201
THR
201
A
VAL
202
n
202
VAL
202
A
TYR
203
n
203
TYR
203
A
ARG
204
n
204
ARG
204
A
TYR
205
n
205
TYR
205
A
GLY
206
n
206
GLY
206
A
GLY
207
n
207
GLY
207
A
GLU
208
n
208
GLU
208
A
GLU
209
n
209
GLU
209
A
PHE
210
n
210
PHE
210
A
ILE
211
n
211
ILE
211
A
ILE
212
n
212
ILE
212
A
ILE
213
n
213
ILE
213
A
VAL
214
n
214
VAL
214
A
LYS
215
n
215
LYS
215
A
ALA
216
n
216
ALA
216
A
ALA
217
n
217
ALA
217
A
ASN
218
n
218
ASN
218
A
ASP
219
n
219
ASP
219
A
GLU
220
n
220
GLU
220
A
GLU
221
n
221
GLU
221
A
ALA
222
n
222
ALA
222
A
CYS
223
n
223
CYS
223
A
ARG
224
n
224
ARG
224
A
ALA
225
n
225
ALA
225
A
GLY
226
n
226
GLY
226
A
VAL
227
n
227
VAL
227
A
ARG
228
n
228
ARG
228
A
ILE
229
n
229
ILE
229
A
CYS
230
n
230
CYS
230
A
GLN
231
n
231
GLN
231
A
LEU
232
n
232
LEU
232
A
VAL
233
n
233
VAL
233
A
ASP
234
n
234
ASP
234
A
ASN
235
n
235
ASN
235
A
HIS
236
n
236
HIS
236
A
ALA
237
n
237
ALA
237
A
ILE
238
n
238
ILE
238
A
THR
239
n
239
THR
239
A
HIS
240
n
240
HIS
240
A
SER
241
n
241
SER
241
A
GLU
242
n
242
GLU
242
A
GLY
243
n
243
GLY
243
A
HIS
244
n
244
HIS
244
A
ILE
245
n
245
ILE
245
A
ASN
246
n
246
ASN
246
A
ILE
247
n
247
ILE
247
A
THR
248
n
248
THR
248
A
VAL
249
n
249
VAL
249
A
THR
250
n
250
THR
250
A
ALA
251
n
251
ALA
251
A
GLY
252
n
252
GLY
252
A
VAL
253
n
253
VAL
253
A
SER
254
n
254
SER
254
A
ARG
255
n
255
ARG
255
A
ALA
256
n
256
ALA
256
A
PHE
257
n
257
PHE
257
A
PRO
258
n
258
PRO
258
A
GLU
259
n
259
GLU
259
A
GLU
260
n
260
GLU
260
A
PRO
261
n
261
PRO
261
A
LEU
262
n
262
LEU
262
A
ASP
263
n
263
ASP
263
A
VAL
264
n
264
VAL
264
A
VAL
265
n
265
VAL
265
A
ILE
266
n
266
ILE
266
A
GLY
267
n
267
GLY
267
A
ARG
268
n
268
ARG
268
A
ALA
269
n
269
ALA
269
A
ASP
270
n
270
ASP
270
A
ARG
271
n
271
ARG
271
A
ALA
272
n
272
ALA
272
A
MET
273
n
273
MET
273
A
TYR
274
n
274
TYR
274
A
GLU
275
n
275
GLU
275
A
GLY
276
n
276
GLY
276
A
LYS
277
n
277
LYS
277
A
GLN
278
n
278
GLN
278
A
THR
279
n
279
THR
279
A
GLY
280
n
280
GLY
280
A
ARG
281
n
281
ARG
281
A
ASN
282
n
282
ASN
282
A
ARG
283
n
283
ARG
283
A
CYS
284
n
284
CYS
284
A
MET
285
n
285
MET
285
A
PHE
286
n
286
PHE
286
A
ILE
287
n
287
ILE
287
A
ASP
288
n
288
ASP
288
A
GLU
289
n
289
GLU
289
A
GLN
290
n
290
GLN
290
A
ASN
291
n
291
ASN
291
A
VAL
292
n
292
VAL
292
A
ILE
293
n
293
ILE
293
A
ASN
294
n
294
ASN
294
A
ARG
295
n
295
ARG
295
A
VAL
296
n
296
VAL
296
A
n
297
297
A
n
298
298
A
n
299
299
A
n
300
300
A
n
301
301
A
n
302
302
A
n
303
303
A
n
304
304
A
ALA
1
n
1
ALA
1
B
ILE
2
n
2
ILE
2
B
LYS
3
n
3
LYS
3
B
LYS
4
n
4
LYS
4
B
THR
5
n
5
THR
5
B
THR
6
n
6
THR
6
B
GLU
7
n
7
GLU
7
B
ILE
8
n
8
ILE
8
B
ASP
9
n
9
ASP
9
B
ALA
10
n
10
ALA
10
B
ILE
11
n
11
ILE
11
B
LEU
12
n
12
LEU
12
B
LEU
13
n
13
LEU
13
B
ASN
14
n
14
ASN
14
B
LEU
15
n
15
LEU
15
B
ASN
16
n
16
ASN
16
B
LYS
17
n
17
LYS
17
B
ALA
18
n
18
ALA
18
B
ILE
19
n
19
ILE
19
B
ASP
20
n
20
ASP
20
B
ALA
21
n
21
ALA
21
B
HIS
22
n
22
HIS
22
B
TYR
23
n
23
TYR
23
B
GLN
24
n
24
GLN
24
B
TRP
25
n
25
TRP
25
B
LEU
26
n
26
LEU
26
B
VAL
27
n
27
VAL
27
B
SER
28
n
28
SER
28
B
MET
29
n
29
MET
29
B
PHE
30
n
30
PHE
30
B
HIS
31
n
31
HIS
31
B
SER
32
n
32
SER
32
B
VAL
33
n
33
VAL
33
B
VAL
34
n
34
VAL
34
B
ALA
35
n
35
ALA
35
B
ARG
36
n
36
ARG
36
B
n
37
37
B
n
38
38
B
n
39
39
B
n
40
40
B
n
41
41
B
n
42
42
B
n
43
43
B
n
44
44
B
n
45
45
B
n
46
46
B
n
47
47
B
n
48
48
B
n
49
49
B
n
50
50
B
n
51
51
B
n
52
52
B
n
53
53
B
n
54
54
B
n
55
55
B
n
56
56
B
n
57
57
B
n
58
58
B
n
59
59
B
n
60
60
B
n
61
61
B
n
62
62
B
n
63
63
B
n
64
64
B
ASP
65
n
65
ASP
65
B
ASN
66
n
66
ASN
66
B
ASP
67
n
67
ASP
67
B
GLU
68
n
68
GLU
68
B
LEU
69
n
69
LEU
69
B
PRO
70
n
70
PRO
70
B
TYR
71
n
71
TYR
71
B
VAL
72
n
72
VAL
72
B
ARG
73
n
73
ARG
73
B
LEU
74
n
74
LEU
74
B
MET
75
n
75
MET
75
B
ASP
76
n
76
ASP
76
B
SER
77
n
77
SER
77
B
ALA
78
n
78
ALA
78
B
HIS
79
n
79
HIS
79
B
GLN
80
n
80
GLN
80
B
HIS
81
n
81
HIS
81
B
MET
82
n
82
MET
82
B
HIS
83
n
83
HIS
83
B
ASN
84
n
84
ASN
84
B
CYS
85
n
85
CYS
85
B
GLY
86
n
86
GLY
86
B
ARG
87
n
87
ARG
87
B
GLU
88
n
88
GLU
88
B
LEU
89
n
89
LEU
89
B
MET
90
n
90
MET
90
B
LEU
91
n
91
LEU
91
B
ALA
92
n
92
ALA
92
B
ILE
93
n
93
ILE
93
B
VAL
94
n
94
VAL
94
B
GLU
95
n
95
GLU
95
B
ASN
96
n
96
ASN
96
B
HIS
97
n
97
HIS
97
B
TRP
98
n
98
TRP
98
B
GLN
99
n
99
GLN
99
B
ASP
100
n
100
ASP
100
B
ALA
101
n
101
ALA
101
B
HIS
102
n
102
HIS
102
B
PHE
103
n
103
PHE
103
B
ASP
104
n
104
ASP
104
B
ALA
105
n
105
ALA
105
B
PHE
106
n
106
PHE
106
B
GLN
107
n
107
GLN
107
B
GLU
108
n
108
GLU
108
B
GLY
109
n
109
GLY
109
B
LEU
110
n
110
LEU
110
B
LEU
111
n
111
LEU
111
B
SER
112
n
112
SER
112
B
PHE
113
n
113
PHE
113
B
THR
114
n
114
THR
114
B
ALA
115
n
115
ALA
115
B
ALA
116
n
116
ALA
116
B
LEU
117
n
117
LEU
117
B
THR
118
n
118
THR
118
B
ASP
119
n
119
ASP
119
B
TYR
120
n
120
TYR
120
B
LYS
121
n
121
LYS
121
B
ILE
122
n
122
ILE
122
B
TYR
123
n
123
TYR
123
B
LEU
124
n
124
LEU
124
B
LEU
125
n
125
LEU
125
B
THR
126
n
126
THR
126
B
ILE
127
n
127
ILE
127
B
ARG
128
n
128
ARG
128
B
SER
129
n
129
SER
129
B
ASN
130
n
130
ASN
130
B
MET
131
n
131
MET
131
B
ASP
132
n
132
ASP
132
B
VAL
133
n
133
VAL
133
B
LEU
134
n
134
LEU
134
B
THR
135
n
135
THR
135
B
GLY
136
n
136
GLY
136
B
LEU
137
n
137
LEU
137
B
PRO
138
n
138
PRO
138
B
GLY
139
n
139
GLY
139
B
ARG
140
n
140
ARG
140
B
ARG
141
n
141
ARG
141
B
VAL
142
n
142
VAL
142
B
LEU
143
n
143
LEU
143
B
ASP
144
n
144
ASP
144
B
GLU
145
n
145
GLU
145
B
SER
146
n
146
SER
146
B
PHE
147
n
147
PHE
147
B
ASP
148
n
148
ASP
148
B
HIS
149
n
149
HIS
149
B
GLN
150
n
150
GLN
150
B
LEU
151
n
151
LEU
151
B
ARG
152
n
152
ARG
152
B
ASN
153
n
153
ASN
153
B
ALA
154
n
154
ALA
154
B
GLU
155
n
155
GLU
155
B
PRO
156
n
156
PRO
156
B
LEU
157
n
157
LEU
157
B
ASN
158
n
158
ASN
158
B
LEU
159
n
159
LEU
159
B
TYR
160
n
160
TYR
160
B
LEU
161
n
161
LEU
161
B
MET
162
n
162
MET
162
B
LEU
163
n
163
LEU
163
B
LEU
164
n
164
LEU
164
B
ASP
165
n
165
ASP
165
B
ILE
166
n
166
ILE
166
B
ASP
167
n
167
ASP
167
B
ARG
168
n
168
ARG
168
B
PHE
169
n
169
PHE
169
B
LYS
170
n
170
LYS
170
B
LEU
171
n
171
LEU
171
B
VAL
172
n
172
VAL
172
B
ASN
173
n
173
ASN
173
B
ASP
174
n
174
ASP
174
B
THR
175
n
175
THR
175
B
TYR
176
n
176
TYR
176
B
GLY
177
n
177
GLY
177
B
HIS
178
n
178
HIS
178
B
LEU
179
n
179
LEU
179
B
ILE
180
n
180
ILE
180
B
GLY
181
n
181
GLY
181
B
ASP
182
n
182
ASP
182
B
VAL
183
n
183
VAL
183
B
VAL
184
n
184
VAL
184
B
LEU
185
n
185
LEU
185
B
ARG
186
n
186
ARG
186
B
THR
187
n
187
THR
187
B
LEU
188
n
188
LEU
188
B
ALA
189
n
189
ALA
189
B
THR
190
n
190
THR
190
B
TYR
191
n
191
TYR
191
B
LEU
192
n
192
LEU
192
B
ALA
193
n
193
ALA
193
B
SER
194
n
194
SER
194
B
TRP
195
n
195
TRP
195
B
THR
196
n
196
THR
196
B
ARG
197
n
197
ARG
197
B
ASP
198
n
198
ASP
198
B
TYR
199
n
199
TYR
199
B
GLU
200
n
200
GLU
200
B
THR
201
n
201
THR
201
B
VAL
202
n
202
VAL
202
B
TYR
203
n
203
TYR
203
B
ARG
204
n
204
ARG
204
B
TYR
205
n
205
TYR
205
B
GLY
206
n
206
GLY
206
B
GLY
207
n
207
GLY
207
B
GLU
208
n
208
GLU
208
B
GLU
209
n
209
GLU
209
B
PHE
210
n
210
PHE
210
B
ILE
211
n
211
ILE
211
B
ILE
212
n
212
ILE
212
B
ILE
213
n
213
ILE
213
B
VAL
214
n
214
VAL
214
B
LYS
215
n
215
LYS
215
B
ALA
216
n
216
ALA
216
B
ALA
217
n
217
ALA
217
B
ASN
218
n
218
ASN
218
B
ASP
219
n
219
ASP
219
B
GLU
220
n
220
GLU
220
B
GLU
221
n
221
GLU
221
B
ALA
222
n
222
ALA
222
B
CYS
223
n
223
CYS
223
B
ARG
224
n
224
ARG
224
B
ALA
225
n
225
ALA
225
B
GLY
226
n
226
GLY
226
B
VAL
227
n
227
VAL
227
B
ARG
228
n
228
ARG
228
B
ILE
229
n
229
ILE
229
B
CYS
230
n
230
CYS
230
B
GLN
231
n
231
GLN
231
B
LEU
232
n
232
LEU
232
B
VAL
233
n
233
VAL
233
B
ASP
234
n
234
ASP
234
B
ASN
235
n
235
ASN
235
B
HIS
236
n
236
HIS
236
B
ALA
237
n
237
ALA
237
B
ILE
238
n
238
ILE
238
B
THR
239
n
239
THR
239
B
HIS
240
n
240
HIS
240
B
SER
241
n
241
SER
241
B
GLU
242
n
242
GLU
242
B
GLY
243
n
243
GLY
243
B
HIS
244
n
244
HIS
244
B
ILE
245
n
245
ILE
245
B
ASN
246
n
246
ASN
246
B
ILE
247
n
247
ILE
247
B
THR
248
n
248
THR
248
B
VAL
249
n
249
VAL
249
B
THR
250
n
250
THR
250
B
ALA
251
n
251
ALA
251
B
GLY
252
n
252
GLY
252
B
VAL
253
n
253
VAL
253
B
SER
254
n
254
SER
254
B
ARG
255
n
255
ARG
255
B
ALA
256
n
256
ALA
256
B
PHE
257
n
257
PHE
257
B
PRO
258
n
258
PRO
258
B
GLU
259
n
259
GLU
259
B
GLU
260
n
260
GLU
260
B
PRO
261
n
261
PRO
261
B
LEU
262
n
262
LEU
262
B
ASP
263
n
263
ASP
263
B
VAL
264
n
264
VAL
264
B
VAL
265
n
265
VAL
265
B
ILE
266
n
266
ILE
266
B
GLY
267
n
267
GLY
267
B
ARG
268
n
268
ARG
268
B
ALA
269
n
269
ALA
269
B
ASP
270
n
270
ASP
270
B
ARG
271
n
271
ARG
271
B
ALA
272
n
272
ALA
272
B
MET
273
n
273
MET
273
B
TYR
274
n
274
TYR
274
B
GLU
275
n
275
GLU
275
B
GLY
276
n
276
GLY
276
B
LYS
277
n
277
LYS
277
B
GLN
278
n
278
GLN
278
B
THR
279
n
279
THR
279
B
GLY
280
n
280
GLY
280
B
ARG
281
n
281
ARG
281
B
ASN
282
n
282
ASN
282
B
ARG
283
n
283
ARG
283
B
CYS
284
n
284
CYS
284
B
MET
285
n
285
MET
285
B
PHE
286
n
286
PHE
286
B
ILE
287
n
287
ILE
287
B
ASP
288
n
288
ASP
288
B
GLU
289
n
289
GLU
289
B
GLN
290
n
290
GLN
290
B
ASN
291
n
291
ASN
291
B
VAL
292
n
292
VAL
292
B
ILE
293
n
293
ILE
293
B
ASN
294
n
294
ASN
294
B
ARG
295
n
295
ARG
295
B
VAL
296
n
296
VAL
296
B
LEU
297
n
297
LEU
297
B
n
298
298
B
n
299
299
B
n
300
300
B
n
301
301
B
n
302
302
B
n
303
303
B
n
304
304
B
22.0220
2.6762
-0.2496
1.8834
5.6069
6.5377
0.5997
-1.2916
-1.6904
1.6391
-1.1793
-1.0037
-0.1124
0.6492
0.5797
-0.2413
0.5825
0.1972
-0.1783
-0.0543
-0.1768
refined
75.1225
-28.0243
-0.0934
X-RAY DIFFRACTION
9.5482
-0.3882
-0.2998
16.3911
0.1041
11.9367
0.2104
0.2438
-0.6238
-1.0938
-0.1676
0.6109
1.8571
0.4205
-0.0428
-1.0546
-0.8601
-0.3722
-0.4067
0.0293
-1.0341
refined
32.3592
-41.5974
6.2266
X-RAY DIFFRACTION
30.4169
4.3169
-0.1060
-5.1543
6.9736
1.6239
0.7992
-1.1560
2.9013
2.1379
-1.9526
-1.1317
-1.3915
2.3174
1.1535
-0.4696
0.7201
0.2998
-1.1023
-0.0760
0.2237
refined
69.1571
-11.1277
-3.9320
X-RAY DIFFRACTION
7.0653
1.7620
-1.5672
15.7840
-0.7662
9.9917
0.2270
-0.2160
0.8827
-1.5795
0.3185
0.5167
0.3619
-1.1263
-0.5455
-0.2507
-0.4411
-0.2855
-0.4045
-0.2478
-1.4479
refined
29.9366
-18.6675
-9.5784
X-RAY DIFFRACTION
A
5
A
35
X-RAY DIFFRACTION
1
{ A|5 - A|35 A|54 - A|126 A|400 }
A
54
A
126
X-RAY DIFFRACTION
1
{ A|5 - A|35 A|54 - A|126 A|400 }
A
400
A
401
X-RAY DIFFRACTION
1
{ A|5 - A|35 A|54 - A|126 A|400 }
A
127
A
296
X-RAY DIFFRACTION
2
{ A|127 - A|296 A|600 A|601 A|700 A|701 }
A
402
A
600
X-RAY DIFFRACTION
2
{ A|127 - A|296 A|600 A|601 A|700 A|701 }
A
403
A
601
X-RAY DIFFRACTION
2
{ A|127 - A|296 A|600 A|601 A|700 A|701 }
A
404
A
700
X-RAY DIFFRACTION
2
{ A|127 - A|296 A|600 A|601 A|700 A|701 }
A
405
A
701
X-RAY DIFFRACTION
2
{ A|127 - A|296 A|600 A|601 A|700 A|701 }
B
2
B
35
X-RAY DIFFRACTION
3
{ B|2 - B|35 B|65 - B|126 B|400 }
B
65
B
126
X-RAY DIFFRACTION
3
{ B|2 - B|35 B|65 - B|126 B|400 }
B
400
B
401
X-RAY DIFFRACTION
3
{ B|2 - B|35 B|65 - B|126 B|400 }
B
127
B
296
X-RAY DIFFRACTION
4
{ B|127 - B|296 B|600 B|601 B|700}
B
402
B
600
X-RAY DIFFRACTION
4
{ B|127 - B|296 B|600 B|601 B|700}
B
403
B
601
X-RAY DIFFRACTION
4
{ B|127 - B|296 B|600 B|601 B|700}
B
404
B
700
X-RAY DIFFRACTION
4
{ B|127 - B|296 B|600 B|601 B|700}
author_and_software_defined_assembly
PISA
2
dimeric
7750
-109
26060
A
HIS
22
A
NE2
HIS
22
1_555
A
ZN
401
C
ZN
ZN
1_555
A
HIS
79
A
NE2
HIS
79
1_555
79.3
A
HIS
22
A
NE2
HIS
22
1_555
A
ZN
401
C
ZN
ZN
1_555
A
HIS
83
A
NE2
HIS
83
1_555
88.6
A
HIS
79
A
NE2
HIS
79
1_555
A
ZN
401
C
ZN
ZN
1_555
A
HIS
83
A
NE2
HIS
83
1_555
81.3
A
ASP
165
A
OD2
ASP
165
1_555
A
MG
403
E
MG
MG
1_555
A
ILE
166
A
O
ILE
166
1_555
94.4
A
ASP
165
A
OD2
ASP
165
1_555
A
MG
403
E
MG
MG
1_555
A
GLU
208
A
OE2
GLU
208
1_555
72.3
A
ILE
166
A
O
ILE
166
1_555
A
MG
403
E
MG
MG
1_555
A
GLU
208
A
OE2
GLU
208
1_555
120.7
A
ASP
165
A
OD2
ASP
165
1_555
A
MG
403
E
MG
MG
1_555
A
GLU
208
A
OE1
GLU
208
1_555
91.6
A
ILE
166
A
O
ILE
166
1_555
A
MG
403
E
MG
MG
1_555
A
GLU
208
A
OE1
GLU
208
1_555
71.7
A
GLU
208
A
OE2
GLU
208
1_555
A
MG
403
E
MG
MG
1_555
A
GLU
208
A
OE1
GLU
208
1_555
52.1
A
ASP
165
A
OD2
ASP
165
1_555
A
MG
403
E
MG
MG
1_555
A
GAV
402
D
O3G
GAV
1_555
121.1
A
ILE
166
A
O
ILE
166
1_555
A
MG
403
E
MG
MG
1_555
A
GAV
402
D
O3G
GAV
1_555
97.4
A
GLU
208
A
OE2
GLU
208
1_555
A
MG
403
E
MG
MG
1_555
A
GAV
402
D
O3G
GAV
1_555
139.5
A
GLU
208
A
OE1
GLU
208
1_555
A
MG
403
E
MG
MG
1_555
A
GAV
402
D
O3G
GAV
1_555
146.7
A
ASP
165
A
OD2
ASP
165
1_555
A
MG
403
E
MG
MG
1_555
A
GAV
402
D
O2B
GAV
1_555
161.8
A
ILE
166
A
O
ILE
166
1_555
A
MG
403
E
MG
MG
1_555
A
GAV
402
D
O2B
GAV
1_555
72.1
A
GLU
208
A
OE2
GLU
208
1_555
A
MG
403
E
MG
MG
1_555
A
GAV
402
D
O2B
GAV
1_555
103.7
A
GLU
208
A
OE1
GLU
208
1_555
A
MG
403
E
MG
MG
1_555
A
GAV
402
D
O2B
GAV
1_555
72.9
A
GAV
402
D
O3G
GAV
1_555
A
MG
403
E
MG
MG
1_555
A
GAV
402
D
O2B
GAV
1_555
73.8
B
HIS
22
B
NE2
HIS
22
1_555
B
ZN
401
H
ZN
ZN
1_555
B
HIS
79
B
NE2
HIS
79
1_555
86.6
B
HIS
22
B
NE2
HIS
22
1_555
B
ZN
401
H
ZN
ZN
1_555
B
HIS
83
B
NE2
HIS
83
1_555
94.3
B
HIS
79
B
NE2
HIS
79
1_555
B
ZN
401
H
ZN
ZN
1_555
B
HIS
83
B
NE2
HIS
83
1_555
87.3
B
ASP
165
B
OD2
ASP
165
1_555
B
MG
403
J
MG
MG
1_555
B
ILE
166
B
O
ILE
166
1_555
88.1
B
ASP
165
B
OD2
ASP
165
1_555
B
MG
403
J
MG
MG
1_555
B
GLU
208
B
OE1
GLU
208
1_555
80.8
B
ILE
166
B
O
ILE
166
1_555
B
MG
403
J
MG
MG
1_555
B
GLU
208
B
OE1
GLU
208
1_555
74.4
B
ASP
165
B
OD2
ASP
165
1_555
B
MG
403
J
MG
MG
1_555
B
GLU
208
B
OE2
GLU
208
1_555
58.5
B
ILE
166
B
O
ILE
166
1_555
B
MG
403
J
MG
MG
1_555
B
GLU
208
B
OE2
GLU
208
1_555
113.6
B
GLU
208
B
OE1
GLU
208
1_555
B
MG
403
J
MG
MG
1_555
B
GLU
208
B
OE2
GLU
208
1_555
47.1
B
ASP
165
B
OD2
ASP
165
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O2B
GAV
1_555
151.9
B
ILE
166
B
O
ILE
166
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O2B
GAV
1_555
86.8
B
GLU
208
B
OE1
GLU
208
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O2B
GAV
1_555
71.2
B
GLU
208
B
OE2
GLU
208
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O2B
GAV
1_555
98.8
B
ASP
165
B
OD2
ASP
165
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O3B
GAV
1_555
119.9
B
ILE
166
B
O
ILE
166
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O3B
GAV
1_555
149.6
B
GLU
208
B
OE1
GLU
208
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O3B
GAV
1_555
97.2
B
GLU
208
B
OE2
GLU
208
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O3B
GAV
1_555
76.5
B
GAV
402
I
O2B
GAV
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O3B
GAV
1_555
63.0
B
ASP
165
B
OD2
ASP
165
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O3G
GAV
1_555
110.1
B
ILE
166
B
O
ILE
166
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O3G
GAV
1_555
118.1
B
GLU
208
B
OE1
GLU
208
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O3G
GAV
1_555
162.7
B
GLU
208
B
OE2
GLU
208
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O3G
GAV
1_555
126.6
B
GAV
402
I
O2B
GAV
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O3G
GAV
1_555
96.6
B
GAV
402
I
O3B
GAV
1_555
B
MG
403
J
MG
MG
1_555
B
GAV
402
I
O3G
GAV
1_555
66.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
203
A
N
TYR
203
A
O
ILE
211
A
O
ILE
211
A
O
VAL
214
A
O
VAL
214
A
N
TYR
160
A
N
TYR
160
A
N
LEU
163
A
N
LEU
163
A
O
GLY
252
A
O
GLY
252
A
N
VAL
253
A
N
VAL
253
A
O
MET
285
A
O
MET
285
A
N
PHE
286
A
N
PHE
286
A
O
ASN
294
A
O
ASN
294
A
N
HIS
240
A
N
HIS
240
A
O
GLY
243
A
O
GLY
243
B
N
TYR
203
B
N
TYR
203
B
O
ILE
211
B
O
ILE
211
B
O
VAL
214
B
O
VAL
214
B
N
TYR
160
B
N
TYR
160
B
N
LEU
163
B
N
LEU
163
B
O
GLY
252
B
O
GLY
252
B
N
VAL
253
B
N
VAL
253
B
O
MET
285
B
O
MET
285
B
N
PHE
286
B
N
PHE
286
B
O
ASN
294
B
O
ASN
294
B
N
HIS
240
B
N
HIS
240
B
O
GLY
243
B
O
GLY
243
1
A
CG
GLU
7
A
CG
GLU
7
1
Y
1
A
CD
GLU
7
A
CD
GLU
7
1
Y
1
A
OE1
GLU
7
A
OE1
GLU
7
1
Y
1
A
OE2
GLU
7
A
OE2
GLU
7
1
Y
1
A
CG
ARG
56
A
CG
ARG
56
1
Y
1
A
CD
ARG
56
A
CD
ARG
56
1
Y
1
A
NE
ARG
56
A
NE
ARG
56
1
Y
1
A
CZ
ARG
56
A
CZ
ARG
56
1
Y
1
A
NH1
ARG
56
A
NH1
ARG
56
1
Y
1
A
NH2
ARG
56
A
NH2
ARG
56
1
Y
1
A
CG
GLU
108
A
CG
GLU
108
1
Y
1
A
CD
GLU
108
A
CD
GLU
108
1
Y
1
A
OE1
GLU
108
A
OE1
GLU
108
1
Y
1
A
OE2
GLU
108
A
OE2
GLU
108
1
Y
1
B
CG
GLU
108
B
CG
GLU
108
1
Y
1
B
CD
GLU
108
B
CD
GLU
108
1
Y
1
B
OE1
GLU
108
B
OE1
GLU
108
1
Y
1
B
OE2
GLU
108
B
OE2
GLU
108
1
Y
1
B
CG
LEU
179
B
CG
LEU
179
1
Y
1
B
CD1
LEU
179
B
CD1
LEU
179
1
Y
1
B
CD2
LEU
179
B
CD2
LEU
179
1
Y
1
A
PB
GAV
404
F
PB
GAV
1
1
N
1
A
O1B
GAV
404
F
O1B
GAV
1
1
N
1
A
O2B
GAV
404
F
O2B
GAV
1
1
N
1
A
O3B
GAV
404
F
O3B
GAV
1
1
N
1
A
PG
GAV
404
F
PG
GAV
1
1
N
1
A
O1G
GAV
404
F
O1G
GAV
1
1
N
1
A
O3G
GAV
404
F
O3G
GAV
1
1
N
1
A
O2G
GAV
404
F
O2G
GAV
1
1
N
1
B
PB
GAV
404
K
PB
GAV
1
1
N
1
B
O1B
GAV
404
K
O1B
GAV
1
1
N
1
B
O2B
GAV
404
K
O2B
GAV
1
1
N
1
B
O3B
GAV
404
K
O3B
GAV
1
1
N
1
B
PG
GAV
404
K
PG
GAV
1
1
N
1
B
O1G
GAV
404
K
O1G
GAV
1
1
N
1
B
O3G
GAV
404
K
O3G
GAV
1
1
N
1
B
O2G
GAV
404
K
O2G
GAV
1
1
N
1
A
ALA
1
A
ALA
1
1
Y
1
A
ILE
2
A
ILE
2
1
Y
1
A
LYS
3
A
LYS
3
1
Y
1
A
LYS
4
A
LYS
4
1
Y
1
A
ARG
36
A
ARG
36
1
Y
1
A
ASP
37
A
ASP
37
1
Y
1
A
ALA
38
A
ALA
38
1
Y
1
A
SER
39
A
SER
39
1
Y
1
A
LYS
40
A
LYS
40
1
Y
1
A
PRO
41
A
PRO
41
1
Y
1
A
GLU
42
A
GLU
42
1
Y
1
A
ILE
43
A
ILE
43
1
Y
1
A
THR
44
A
THR
44
1
Y
1
A
ASP
45
A
ASP
45
1
Y
1
A
ASN
46
A
ASN
46
1
Y
1
A
HIS
47
A
HIS
47
1
Y
1
A
SER
48
A
SER
48
1
Y
1
A
TYR
49
A
TYR
49
1
Y
1
A
GLY
50
A
GLY
50
1
Y
1
A
LEU
51
A
LEU
51
1
Y
1
A
ALA
52
A
ALA
52
1
Y
1
A
GLN
53
A
GLN
53
1
Y
1
A
LEU
297
A
LEU
297
1
Y
1
A
GLU
298
A
GLU
298
1
Y
1
A
HIS
299
A
HIS
299
1
Y
1
A
HIS
300
A
HIS
300
1
Y
1
A
HIS
301
A
HIS
301
1
Y
1
A
HIS
302
A
HIS
302
1
Y
1
A
HIS
303
A
HIS
303
1
Y
1
A
HIS
304
A
HIS
304
1
Y
1
B
ASP
37
B
ASP
37
1
Y
1
B
ALA
38
B
ALA
38
1
Y
1
B
SER
39
B
SER
39
1
Y
1
B
LYS
40
B
LYS
40
1
Y
1
B
PRO
41
B
PRO
41
1
Y
1
B
GLU
42
B
GLU
42
1
Y
1
B
ILE
43
B
ILE
43
1
Y
1
B
THR
44
B
THR
44
1
Y
1
B
ASP
45
B
ASP
45
1
Y
1
B
ASN
46
B
ASN
46
1
Y
1
B
HIS
47
B
HIS
47
1
Y
1
B
SER
48
B
SER
48
1
Y
1
B
TYR
49
B
TYR
49
1
Y
1
B
GLY
50
B
GLY
50
1
Y
1
B
LEU
51
B
LEU
51
1
Y
1
B
ALA
52
B
ALA
52
1
Y
1
B
GLN
53
B
GLN
53
1
Y
1
B
PHE
54
B
PHE
54
1
Y
1
B
GLY
55
B
GLY
55
1
Y
1
B
ARG
56
B
ARG
56
1
Y
1
B
TRP
57
B
TRP
57
1
Y
1
B
ILE
58
B
ILE
58
1
Y
1
B
ASP
59
B
ASP
59
1
Y
1
B
HIS
60
B
HIS
60
1
Y
1
B
LEU
61
B
LEU
61
1
Y
1
B
GLY
62
B
GLY
62
1
Y
1
B
PRO
63
B
PRO
63
1
Y
1
B
LEU
64
B
LEU
64
1
Y
1
B
GLU
298
B
GLU
298
1
Y
1
B
HIS
299
B
HIS
299
1
Y
1
B
HIS
300
B
HIS
300
1
Y
1
B
HIS
301
B
HIS
301
1
Y
1
B
HIS
302
B
HIS
302
1
Y
1
B
HIS
303
B
HIS
303
1
Y
1
B
HIS
304
B
HIS
304
1
Y
1
A
HIS
60
-97.41
38.12
1
A
PRO
63
-22.22
113.07
1
A
LEU
64
-86.14
-144.85
1
A
HIS
97
-153.32
46.81
1
A
ARG
281
84.59
176.26
1
B
LYS
3
47.24
174.79
1
B
LYS
4
52.34
113.39
1
B
HIS
97
-152.88
46.11
1
B
ASN
130
-78.30
20.63
1
B
ARG
281
84.36
176.25
68.05
-21.3747
0.0000
0.0000
-21.3747
0.0000
42.7495
0.7059
0.6601
0.2411
0.2422
0.2421
3.90
73.20
335
7096
7072
4.74
99.76
1.00
0.50
RANDOM
1
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
0.7160
PDB ENTRIES 3T90 AND 3TVK
Engh & Huber
0.846
3.90
73.20
0
4510
162
0
4348
0.016
4613
HARMONIC
2.00
1.04
6297
HARMONIC
2.00
1613
SINUSOIDAL
2.00
120
HARMONIC
2.00
656
HARMONIC
5.00
4613
HARMONIC
20.00
4
SEMIHARMONIC
5.00
4.690
15.600
605
SEMIHARMONIC
5.000
5723
SEMIHARMONIC
4.000
0.2411
0.2390
0.2391
4.36
102
1892
1994
5
5.12
99.76
104.93
3.9
89
4H54
7096
7076
0
0
1
99.9
0.77
3.9
4.11
1.00
0.83
1
7.93
99.87
0.57
4.11
4.36
1.31
0.59
1
12.27
99.96
0.40
4.36
4.66
1.81
0.42
1
14.30
99.96
0.31
4.66
4.66
2.36
0.32
1
14.31
99.96
0.26
4.66
5.52
2.88
0.27
1
14.36
99.96
0.25
5.52
6.17
2.93
0.26
1
14.19
99.95
0.17
6.17
7.12
4.13
0.17
1
14.28
99.97
0.07
7.12
8.72
9.54
0.07
1
14.21
99.94
0.04
8.72
12.33
15.53
0.04
1
13.98
99.92
0.03
12.33
89.05
15.45
0.04
1
13.38
99.06
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
help@deposit.rcsb.org
June 11, 2008
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.006
data collection
MARMOSAIC
225
data reduction
MOSFLM
data scaling
SCALA
phasing
PHASER
refinement
BUSTER
2.10.0
Crystal structure of the diguanylate cyclase DgcZ
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
5
N
N
2
N
N
3
N
N
4
N
N
3
N
N
A
THR
5
A
THR
5
HELX_P
A
ALA
35
A
ALA
35
1
1
31
A
ILE
58
A
ILE
58
HELX_P
A
GLY
62
A
GLY
62
5
2
5
A
GLU
68
A
GLU
68
HELX_P
A
GLU
95
A
GLU
95
1
3
28
A
GLN
99
A
GLN
99
HELX_P
A
ASN
130
A
ASN
130
1
4
32
A
GLY
139
A
GLY
139
HELX_P
A
ASN
153
A
ASN
153
1
5
15
A
ARG
168
A
ARG
168
HELX_P
A
GLY
177
A
GLY
177
1
6
10
A
GLY
177
A
GLY
177
HELX_P
A
THR
196
A
THR
196
1
7
20
A
ASN
218
A
ASN
218
HELX_P
A
HIS
236
A
HIS
236
1
8
19
A
PRO
261
A
PRO
261
HELX_P
A
GLY
280
A
GLY
280
1
9
20
B
THR
5
B
THR
5
HELX_P
B
ARG
36
B
ARG
36
1
10
32
B
GLU
68
B
GLU
68
HELX_P
B
GLU
95
B
GLU
95
1
11
28
B
GLN
99
B
GLN
99
HELX_P
B
ASN
130
B
ASN
130
1
12
32
B
GLY
139
B
GLY
139
HELX_P
B
ASN
153
B
ASN
153
1
13
15
B
ARG
168
B
ARG
168
HELX_P
B
GLY
177
B
GLY
177
1
14
10
B
GLY
177
B
GLY
177
HELX_P
B
THR
196
B
THR
196
1
15
20
B
ASN
218
B
ASN
218
HELX_P
B
HIS
236
B
HIS
236
1
16
19
B
PRO
261
B
PRO
261
HELX_P
B
GLY
280
B
GLY
280
1
17
20
metalc
2.209
A
HIS
22
A
NE2
HIS
22
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.310
A
HIS
79
A
NE2
HIS
79
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.120
A
HIS
83
A
NE2
HIS
83
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
1.727
A
ASP
165
A
OD2
ASP
165
1_555
A
MG
403
E
MG
MG
1_555
metalc
1.976
A
ILE
166
A
O
ILE
166
1_555
A
MG
403
E
MG
MG
1_555
metalc
2.446
A
GLU
208
A
OE2
GLU
208
1_555
A
MG
403
E
MG
MG
1_555
metalc
2.528
A
GLU
208
A
OE1
GLU
208
1_555
A
MG
403
E
MG
MG
1_555
metalc
1.856
A
GAV
402
D
O3G
GAV
1_555
A
MG
403
E
MG
MG
1_555
metalc
2.562
A
GAV
402
D
O2B
GAV
1_555
A
MG
403
E
MG
MG
1_555
metalc
2.226
B
HIS
22
B
NE2
HIS
22
1_555
B
ZN
401
H
ZN
ZN
1_555
metalc
2.096
B
HIS
79
B
NE2
HIS
79
1_555
B
ZN
401
H
ZN
ZN
1_555
metalc
2.017
B
HIS
83
B
NE2
HIS
83
1_555
B
ZN
401
H
ZN
ZN
1_555
metalc
2.196
B
ASP
165
B
OD2
ASP
165
1_555
B
MG
403
J
MG
MG
1_555
metalc
1.677
B
ILE
166
B
O
ILE
166
1_555
B
MG
403
J
MG
MG
1_555
metalc
2.589
B
GLU
208
B
OE1
GLU
208
1_555
B
MG
403
J
MG
MG
1_555
metalc
2.874
B
GLU
208
B
OE2
GLU
208
1_555
B
MG
403
J
MG
MG
1_555
metalc
2.141
B
GAV
402
I
O2B
GAV
1_555
B
MG
403
J
MG
MG
1_555
metalc
2.709
B
GAV
402
I
O3B
GAV
1_555
B
MG
403
J
MG
MG
1_555
metalc
1.672
B
GAV
402
I
O3G
GAV
1_555
B
MG
403
J
MG
MG
1_555
TRANSFERASE
zinc sensor, c-di-GMP, CZB domain, TRANSFERASE
A
GLU
155
A
GLU
155
1
A
PRO
156
A
PRO
156
-0.35
B
ALA
1
B
ALA
1
1
B
ILE
2
B
ILE
2
-2.83
B
GLU
155
B
GLU
155
1
B
PRO
156
B
PRO
156
0.06
YDEH_ECOLI
UNP
1
2
P31129
IKKTTEIDAILLNLNKAIDAHYQWLVSMFHSVVARDASKPEITDNHSYGLCQFGRWIDHLGPLDNDELPYVRLMDSAHQH
MHNCGRELMLAIVENHWQDAHFDAFQEGLLSFTAALTDYKIYLLTIRSNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYL
MLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKAANDEEACRAGVRICQLVDNHAITHS
EGHINITVTAGVSRAFPEEPLDVVIGRADRAMYEGKQTGRNRCMFIDEQNVINRV
2
296
4H54
2
296
P31129
A
1
2
296
2
296
4H54
2
296
P31129
B
1
2
296
1
expression tag
ALA
1
4H54
A
P31129
UNP
1
1
CYS
engineered mutation
ALA
52
4H54
A
P31129
UNP
52
52
1
expression tag
LEU
297
4H54
A
P31129
UNP
297
1
expression tag
GLU
298
4H54
A
P31129
UNP
298
1
expression tag
HIS
299
4H54
A
P31129
UNP
299
1
expression tag
HIS
300
4H54
A
P31129
UNP
300
1
expression tag
HIS
301
4H54
A
P31129
UNP
301
1
expression tag
HIS
302
4H54
A
P31129
UNP
302
1
expression tag
HIS
303
4H54
A
P31129
UNP
303
1
expression tag
HIS
304
4H54
A
P31129
UNP
304
2
expression tag
ALA
1
4H54
B
P31129
UNP
1
2
CYS
engineered mutation
ALA
52
4H54
B
P31129
UNP
52
52
2
expression tag
LEU
297
4H54
B
P31129
UNP
297
2
expression tag
GLU
298
4H54
B
P31129
UNP
298
2
expression tag
HIS
299
4H54
B
P31129
UNP
299
2
expression tag
HIS
300
4H54
B
P31129
UNP
300
2
expression tag
HIS
301
4H54
B
P31129
UNP
301
2
expression tag
HIS
302
4H54
B
P31129
UNP
302
2
expression tag
HIS
303
4H54
B
P31129
UNP
303
2
expression tag
HIS
304
4H54
B
P31129
UNP
304
6
2
6
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
VAL
202
A
VAL
202
A
ARG
204
A
ARG
204
A
GLU
209
A
GLU
209
A
ALA
216
A
ALA
216
A
ASN
158
A
ASN
158
A
ILE
166
A
ILE
166
A
VAL
249
A
VAL
249
A
ALA
256
A
ALA
256
A
CYS
284
A
CYS
284
A
ILE
287
A
ILE
287
A
ILE
293
A
ILE
293
A
ARG
295
A
ARG
295
A
ILE
238
A
ILE
238
A
HIS
240
A
HIS
240
A
GLY
243
A
GLY
243
A
ILE
245
A
ILE
245
B
VAL
202
B
VAL
202
B
ARG
204
B
ARG
204
B
GLU
209
B
GLU
209
B
ALA
216
B
ALA
216
B
ASN
158
B
ASN
158
B
ILE
166
B
ILE
166
B
VAL
249
B
VAL
249
B
ALA
256
B
ALA
256
B
CYS
284
B
CYS
284
B
ILE
287
B
ILE
287
B
ILE
293
B
ILE
293
B
ARG
295
B
ARG
295
B
ILE
238
B
ILE
238
B
HIS
240
B
HIS
240
B
GLY
243
B
GLY
243
B
ILE
245
B
ILE
245
BINDING SITE FOR RESIDUE ZN A 401
A
ZN
401
Software
3
BINDING SITE FOR RESIDUE GAV A 402
A
GAV
402
Software
19
BINDING SITE FOR RESIDUE MG A 403
A
MG
403
Software
5
BINDING SITE FOR RESIDUE GAV A 404
A
GAV
404
Software
5
BINDING SITE FOR RESIDUE C2E A 405
A
C2E
405
Software
14
BINDING SITE FOR RESIDUE ZN B 401
B
ZN
401
Software
3
BINDING SITE FOR RESIDUE GAV B 402
B
GAV
402
Software
19
BINDING SITE FOR RESIDUE MG B 403
B
MG
403
Software
6
BINDING SITE FOR RESIDUE GAV B 404
B
GAV
404
Software
8
A
HIS
22
A
HIS
22
3
1_555
A
HIS
79
A
HIS
79
3
1_555
A
HIS
83
A
HIS
83
3
1_555
A
LEU
134
A
LEU
134
19
1_555
A
ASP
165
A
ASP
165
19
1_555
A
ILE
166
A
ILE
166
19
1_555
A
ASP
167
A
ASP
167
19
1_555
A
ARG
168
A
ARG
168
19
1_555
A
PHE
169
A
PHE
169
19
1_555
A
LYS
170
A
LYS
170
19
1_555
A
ASN
173
A
ASN
173
19
1_555
A
HIS
178
A
HIS
178
19
1_555
A
ASP
182
A
ASP
182
19
1_555
A
LEU
185
A
LEU
185
19
1_555
A
ARG
204
A
ARG
204
19
1_555
A
GLY
207
A
GLY
207
19
1_555
A
GLU
208
A
GLU
208
19
1_555
A
LYS
277
A
LYS
277
19
1_555
A
ARG
281
A
ARG
281
19
1_555
A
MG
403
E
MG
19
1_555
B
ARG
140
B
ARG
140
19
1_555
B
TYR
205
B
TYR
205
19
1_555
A
ASP
165
A
ASP
165
5
1_555
A
ILE
166
A
ILE
166
5
1_555
A
GLU
208
A
GLU
208
5
1_555
A
LYS
277
A
LYS
277
5
1_555
A
GAV
402
D
GAV
5
1_555
A
GLU
200
A
GLU
200
5
1_555
A
LYS
215
A
LYS
215
5
1_555
A
ALA
225
A
ALA
225
5
1_555
A
ARG
228
A
ARG
228
5
1_555
A
C2E
405
G
C2E
5
1_555
A
SER
194
A
SER
194
14
1_555
A
TRP
195
A
TRP
195
14
1_555
A
THR
196
A
THR
196
14
1_555
A
ARG
197
A
ARG
197
14
1_555
A
ASP
198
A
ASP
198
14
1_555
A
ARG
228
A
ARG
228
14
1_555
A
GAV
404
F
GAV
14
1_555
B
SER
194
B
SER
194
14
2_545
B
TRP
195
B
TRP
195
14
2_545
B
THR
196
B
THR
196
14
2_545
B
ARG
197
B
ARG
197
14
2_545
B
ASP
198
B
ASP
198
14
2_545
B
ARG
228
B
ARG
228
14
2_545
B
GAV
404
K
GAV
14
2_545
B
HIS
22
B
HIS
22
3
1_555
B
HIS
79
B
HIS
79
3
1_555
B
HIS
83
B
HIS
83
3
1_555
A
ARG
140
A
ARG
140
19
1_555
A
GLU
209
A
GLU
209
19
1_555
B
LEU
134
B
LEU
134
19
1_555
B
ASP
165
B
ASP
165
19
1_555
B
ILE
166
B
ILE
166
19
1_555
B
ASP
167
B
ASP
167
19
1_555
B
ARG
168
B
ARG
168
19
1_555
B
PHE
169
B
PHE
169
19
1_555
B
LYS
170
B
LYS
170
19
1_555
B
ASN
173
B
ASN
173
19
1_555
B
HIS
178
B
HIS
178
19
1_555
B
ASP
182
B
ASP
182
19
1_555
B
LEU
185
B
LEU
185
19
1_555
B
ARG
204
B
ARG
204
19
1_555
B
GLY
207
B
GLY
207
19
1_555
B
GLU
208
B
GLU
208
19
1_555
B
LYS
277
B
LYS
277
19
1_555
B
ARG
281
B
ARG
281
19
1_555
B
MG
403
J
MG
19
1_555
B
ASP
165
B
ASP
165
6
1_555
B
ILE
166
B
ILE
166
6
1_555
B
ASP
167
B
ASP
167
6
1_555
B
GLU
208
B
GLU
208
6
1_555
B
LYS
277
B
LYS
277
6
1_555
B
GAV
402
I
GAV
6
1_555
A
C2E
405
G
C2E
8
3_654
B
ARG
197
B
ARG
197
8
1_555
B
TYR
199
B
TYR
199
8
1_555
B
GLU
200
B
GLU
200
8
1_555
B
LYS
215
B
LYS
215
8
1_555
B
ARG
224
B
ARG
224
8
1_555
B
ALA
225
B
ALA
225
8
1_555
B
ARG
228
B
ARG
228
8
1_555
169
P 61