0.011360 0.000000 0.005642 0.000000 0.033704 0.000000 0.000000 0.000000 0.018009 0.000000 0.000000 0.000000 Musselman, C.A. Roy, S. Nunez, J. Kutateladze, T.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 116.410 90.000 88.030 29.670 62.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H21 N2 O2 1 189.275 n N-TRIMETHYLLYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N O N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N N N 58 R C N 59 N C N 60 N O N 61 N C N 62 N S N 63 N O N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N N N 72 S C N 73 N C N 74 N O N 75 N C N 76 N C N 77 N C N 78 N O N 79 N N N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N N N 92 S C N 93 N C N 94 N O N 95 N C N 96 N C N 97 N C N 98 N O N 99 N O N 100 N O N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N N N 111 N C N 112 N C N 113 N O N 114 N O N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N N N 121 S C N 122 N C N 123 N O N 124 N C Y 125 N C Y 126 N N Y 127 N C Y 128 N C Y 129 N N N 130 N O N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N O N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 S C N 149 N C N 150 N C N 151 N C N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N C N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N C N 195 N C N 196 N N N 197 N O N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N C N 217 N C N 218 N C N 219 N N N 220 N C N 221 N O N 222 N O N 223 N C N 224 N C N 225 N C N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing Y 124 N sing Y 125 N doub Y 126 N doub N 127 N sing Y 128 N sing N 129 N sing Y 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing US Nat.Struct.Mol.Biol. 1545-9993 19 1266 1272 10.1038/nsmb.2435 23142980 Molecular basis for H3K36me3 recognition by the Tudor domain of PHF1. 2012 10.2210/pdb4hcz/pdb pdb_00004hcz 100 1 IMAGE PLATE 2011-01-20 RIGAKU RAXIS IV++ Ni Filter SINGLE WAVELENGTH M x-ray 1 1.541 1.0 1.541 ROTATING ANODE RIGAKU RUH3R 6623.570 PHD finger protein 1 Tudor domain 2 man polymer 1112.326 H3L-like histone H3K36me3 2 syn polymer 18.015 water 161 nat water Protein PHF1, Polycomb-like protein 1, hPCl1 no no RPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPG RPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPG A,B polypeptide(L) no yes STGGV(M3L)KPHR STGGVKKPHR C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample PHF1, PCL1 9606 Homo sapiens 562 Escherichia coli 1 2.34 47.51 VAPOR DIFFUSION, SITTING DROP 7.5 0.1 M HEPES pH 7.5, 20% PEG 10000, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K 277.15 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2012-11-14 1 1 2012-12-19 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag RCSB Y RCSB 2012-10-01 REL REL HOH water Synthetic human H3K36me3 peptide 9606 human Homo sapiens sample 2E5P PDB ENTRY 2E5P PDB experimental model HOH 1 3 HOH HOH 101 A HOH 2 3 HOH HOH 102 A HOH 3 3 HOH HOH 103 A HOH 11 3 HOH HOH 104 A HOH 12 3 HOH HOH 105 A HOH 13 3 HOH HOH 106 A HOH 17 3 HOH HOH 107 A HOH 19 3 HOH HOH 108 A HOH 22 3 HOH HOH 109 A HOH 23 3 HOH HOH 110 A HOH 26 3 HOH HOH 111 A HOH 27 3 HOH HOH 112 A HOH 28 3 HOH HOH 113 A HOH 31 3 HOH HOH 114 A HOH 32 3 HOH HOH 115 A HOH 35 3 HOH HOH 116 A HOH 36 3 HOH HOH 117 A HOH 39 3 HOH HOH 118 A HOH 43 3 HOH HOH 119 A HOH 44 3 HOH HOH 120 A HOH 46 3 HOH HOH 121 A HOH 48 3 HOH HOH 122 A HOH 51 3 HOH HOH 123 A HOH 52 3 HOH HOH 124 A HOH 53 3 HOH HOH 125 A HOH 57 3 HOH HOH 126 A HOH 58 3 HOH HOH 127 A HOH 60 3 HOH HOH 128 A HOH 61 3 HOH HOH 129 A HOH 66 3 HOH HOH 130 A HOH 70 3 HOH HOH 131 A HOH 71 3 HOH HOH 132 A HOH 72 3 HOH HOH 133 A HOH 73 3 HOH HOH 134 A HOH 74 3 HOH HOH 135 A HOH 75 3 HOH HOH 136 A HOH 76 3 HOH HOH 137 A HOH 77 3 HOH HOH 138 A HOH 78 3 HOH HOH 139 A HOH 79 3 HOH HOH 140 A HOH 80 3 HOH HOH 141 A HOH 84 3 HOH HOH 142 A HOH 85 3 HOH HOH 143 A HOH 86 3 HOH HOH 144 A HOH 87 3 HOH HOH 145 A HOH 88 3 HOH HOH 146 A HOH 89 3 HOH HOH 147 A HOH 90 3 HOH HOH 148 A HOH 92 3 HOH HOH 149 A HOH 93 3 HOH HOH 150 A HOH 94 3 HOH HOH 151 A HOH 95 3 HOH HOH 152 A HOH 96 3 HOH HOH 153 A HOH 97 3 HOH HOH 154 A HOH 98 3 HOH HOH 155 A HOH 99 3 HOH HOH 156 A HOH 133 3 HOH HOH 157 A HOH 134 3 HOH HOH 158 A HOH 135 3 HOH HOH 159 A HOH 136 3 HOH HOH 160 A HOH 137 3 HOH HOH 161 A HOH 138 3 HOH HOH 162 A HOH 141 3 HOH HOH 163 A HOH 142 3 HOH HOH 164 A HOH 143 3 HOH HOH 165 A HOH 144 3 HOH HOH 166 A HOH 145 3 HOH HOH 167 A HOH 146 3 HOH HOH 168 A HOH 147 3 HOH HOH 169 A HOH 4 3 HOH HOH 101 B HOH 5 3 HOH HOH 102 B HOH 6 3 HOH HOH 103 B HOH 7 3 HOH HOH 104 B HOH 8 3 HOH HOH 105 B HOH 9 3 HOH HOH 106 B HOH 10 3 HOH HOH 107 B HOH 14 3 HOH HOH 108 B HOH 16 3 HOH HOH 109 B HOH 18 3 HOH HOH 110 B HOH 20 3 HOH HOH 111 B HOH 21 3 HOH HOH 112 B HOH 24 3 HOH HOH 113 B HOH 25 3 HOH HOH 114 B HOH 29 3 HOH HOH 115 B HOH 30 3 HOH HOH 116 B HOH 33 3 HOH HOH 117 B HOH 34 3 HOH HOH 118 B HOH 37 3 HOH HOH 119 B HOH 38 3 HOH HOH 120 B HOH 40 3 HOH HOH 121 B HOH 41 3 HOH HOH 122 B HOH 42 3 HOH HOH 123 B HOH 45 3 HOH HOH 124 B HOH 47 3 HOH HOH 125 B HOH 49 3 HOH HOH 126 B HOH 50 3 HOH HOH 127 B HOH 54 3 HOH HOH 128 B HOH 55 3 HOH HOH 129 B HOH 56 3 HOH HOH 130 B HOH 62 3 HOH HOH 131 B HOH 63 3 HOH HOH 132 B HOH 64 3 HOH HOH 133 B HOH 65 3 HOH HOH 134 B HOH 68 3 HOH HOH 135 B HOH 100 3 HOH HOH 136 B HOH 101 3 HOH HOH 137 B HOH 102 3 HOH HOH 138 B HOH 103 3 HOH HOH 139 B HOH 104 3 HOH HOH 140 B HOH 105 3 HOH HOH 141 B HOH 106 3 HOH HOH 142 B HOH 107 3 HOH HOH 143 B HOH 108 3 HOH HOH 144 B HOH 109 3 HOH HOH 145 B HOH 110 3 HOH HOH 146 B HOH 111 3 HOH HOH 147 B HOH 112 3 HOH HOH 148 B HOH 113 3 HOH HOH 149 B HOH 114 3 HOH HOH 150 B HOH 115 3 HOH HOH 151 B HOH 116 3 HOH HOH 152 B HOH 117 3 HOH HOH 153 B HOH 118 3 HOH HOH 154 B HOH 119 3 HOH HOH 155 B HOH 120 3 HOH HOH 156 B HOH 121 3 HOH HOH 157 B HOH 122 3 HOH HOH 158 B HOH 123 3 HOH HOH 159 B HOH 124 3 HOH HOH 160 B HOH 125 3 HOH HOH 161 B HOH 126 3 HOH HOH 162 B HOH 127 3 HOH HOH 163 B HOH 128 3 HOH HOH 164 B HOH 129 3 HOH HOH 165 B HOH 130 3 HOH HOH 166 B HOH 131 3 HOH HOH 167 B HOH 148 3 HOH HOH 168 B HOH 149 3 HOH HOH 169 B HOH 150 3 HOH HOH 170 B HOH 151 3 HOH HOH 171 B HOH 152 3 HOH HOH 172 B HOH 153 3 HOH HOH 173 B HOH 154 3 HOH HOH 174 B HOH 155 3 HOH HOH 175 B HOH 156 3 HOH HOH 176 B HOH 157 3 HOH HOH 177 B HOH 158 3 HOH HOH 178 B HOH 59 3 HOH HOH 101 C HOH 69 3 HOH HOH 102 C HOH 81 3 HOH HOH 103 C HOH 82 3 HOH HOH 104 C HOH 83 3 HOH HOH 105 C HOH 91 3 HOH HOH 106 C HOH 132 3 HOH HOH 107 C HOH 139 3 HOH HOH 108 C HOH 140 3 HOH HOH 109 C HOH 15 3 HOH HOH 101 D HOH 67 3 HOH HOH 102 D HOH 159 3 HOH HOH 103 D HOH 160 3 HOH HOH 104 D HOH 161 3 HOH HOH 105 D ARG 28 n 1 ARG 28 A PRO 29 n 2 PRO 29 A ARG 30 n 3 ARG 30 A LEU 31 n 4 LEU 31 A TRP 32 n 5 TRP 32 A GLU 33 n 6 GLU 33 A GLY 34 n 7 GLY 34 A GLN 35 n 8 GLN 35 A ASP 36 n 9 ASP 36 A VAL 37 n 10 VAL 37 A LEU 38 n 11 LEU 38 A ALA 39 n 12 ALA 39 A ARG 40 n 13 ARG 40 A TRP 41 n 14 TRP 41 A THR 42 n 15 THR 42 A ASP 43 n 16 ASP 43 A GLY 44 n 17 GLY 44 A LEU 45 n 18 LEU 45 A LEU 46 n 19 LEU 46 A TYR 47 n 20 TYR 47 A LEU 48 n 21 LEU 48 A GLY 49 n 22 GLY 49 A THR 50 n 23 THR 50 A ILE 51 n 24 ILE 51 A LYS 52 n 25 LYS 52 A LYS 53 n 26 LYS 53 A VAL 54 n 27 VAL 54 A ASP 55 n 28 ASP 55 A SER 56 n 29 SER 56 A ALA 57 n 30 ALA 57 A ARG 58 n 31 ARG 58 A GLU 59 n 32 GLU 59 A VAL 60 n 33 VAL 60 A CYS 61 n 34 CYS 61 A LEU 62 n 35 LEU 62 A VAL 63 n 36 VAL 63 A GLN 64 n 37 GLN 64 A PHE 65 n 38 PHE 65 A GLU 66 n 39 GLU 66 A ASP 67 n 40 ASP 67 A ASP 68 n 41 ASP 68 A SER 69 n 42 SER 69 A GLN 70 n 43 GLN 70 A PHE 71 n 44 PHE 71 A LEU 72 n 45 LEU 72 A VAL 73 n 46 VAL 73 A LEU 74 n 47 LEU 74 A TRP 75 n 48 TRP 75 A LYS 76 n 49 LYS 76 A ASP 77 n 50 ASP 77 A ILE 78 n 51 ILE 78 A SER 79 n 52 SER 79 A PRO 80 n 53 PRO 80 A ALA 81 n 54 ALA 81 A ALA 82 n 55 ALA 82 A LEU 83 n 56 LEU 83 A PRO 84 n 57 PRO 84 A GLY 85 n 58 GLY 85 A ARG 28 n 1 ARG 28 B PRO 29 n 2 PRO 29 B ARG 30 n 3 ARG 30 B LEU 31 n 4 LEU 31 B TRP 32 n 5 TRP 32 B GLU 33 n 6 GLU 33 B GLY 34 n 7 GLY 34 B GLN 35 n 8 GLN 35 B ASP 36 n 9 ASP 36 B VAL 37 n 10 VAL 37 B LEU 38 n 11 LEU 38 B ALA 39 n 12 ALA 39 B ARG 40 n 13 ARG 40 B TRP 41 n 14 TRP 41 B THR 42 n 15 THR 42 B ASP 43 n 16 ASP 43 B GLY 44 n 17 GLY 44 B LEU 45 n 18 LEU 45 B LEU 46 n 19 LEU 46 B TYR 47 n 20 TYR 47 B LEU 48 n 21 LEU 48 B GLY 49 n 22 GLY 49 B THR 50 n 23 THR 50 B ILE 51 n 24 ILE 51 B LYS 52 n 25 LYS 52 B LYS 53 n 26 LYS 53 B VAL 54 n 27 VAL 54 B ASP 55 n 28 ASP 55 B SER 56 n 29 SER 56 B ALA 57 n 30 ALA 57 B ARG 58 n 31 ARG 58 B GLU 59 n 32 GLU 59 B VAL 60 n 33 VAL 60 B CYS 61 n 34 CYS 61 B LEU 62 n 35 LEU 62 B VAL 63 n 36 VAL 63 B GLN 64 n 37 GLN 64 B PHE 65 n 38 PHE 65 B GLU 66 n 39 GLU 66 B ASP 67 n 40 ASP 67 B ASP 68 n 41 ASP 68 B SER 69 n 42 SER 69 B GLN 70 n 43 GLN 70 B PHE 71 n 44 PHE 71 B LEU 72 n 45 LEU 72 B VAL 73 n 46 VAL 73 B LEU 74 n 47 LEU 74 B TRP 75 n 48 TRP 75 B LYS 76 n 49 LYS 76 B ASP 77 n 50 ASP 77 B ILE 78 n 51 ILE 78 B SER 79 n 52 SER 79 B PRO 80 n 53 PRO 80 B ALA 81 n 54 ALA 81 B ALA 82 n 55 ALA 82 B LEU 83 n 56 LEU 83 B PRO 84 n 57 PRO 84 B n 58 85 B SER 31 n 1 SER 31 C THR 32 n 2 THR 32 C GLY 33 n 3 GLY 33 C GLY 34 n 4 GLY 34 C VAL 35 n 5 VAL 35 C M3L 36 n 6 M3L 36 C LYS 37 n 7 LYS 37 C PRO 38 n 8 PRO 38 C HIS 39 n 9 HIS 39 C ARG 40 n 10 ARG 40 C n 1 31 D n 2 32 D n 3 33 D GLY 34 n 4 GLY 34 D VAL 35 n 5 VAL 35 D M3L 36 n 6 M3L 36 D LYS 37 n 7 LYS 37 D PRO 38 n 8 PRO 38 D HIS 39 n 9 HIS 39 D ALA 40 n 10 ARG 40 D 1.2675 0.2667 0.6046 1.3977 0.8212 0.6479 -0.0042 0.0173 0.1757 -0.0297 0.0397 0.1476 -0.0169 -0.0492 -0.0000 0.1690 0.0084 0.0061 0.1649 0.0177 0.1609 refined -0.3947 -1.4904 24.6741 X-RAY DIFFRACTION A 28 A 85 X-RAY DIFFRACTION 1 Chain A author_and_software_defined_assembly PISA 2 dimeric author_and_software_defined_assembly PISA 2 dimeric 970 -6 4920 820 -7 4540 C M3L 36 N-TRIMETHYLLYSINE C M3L 6 LYS D M3L 36 N-TRIMETHYLLYSINE D M3L 6 LYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 71 A O PHE 44 A N VAL 63 A N VAL 36 A O LEU 62 A O LEU 35 A N LYS 52 A N LYS 25 A O GLY 49 A O GLY 22 A N VAL 37 A N VAL 10 A N LEU 38 A N LEU 11 A O SER 79 A O SER 52 B O PHE 71 B O PHE 44 B N VAL 63 B N VAL 36 B O LEU 62 B O LEU 35 B N LYS 52 B N LYS 25 B O GLY 49 B O GLY 22 B N VAL 37 B N VAL 10 B N LEU 38 B N LEU 11 B O SER 79 B O SER 52 1 D CG ARG 40 D CG ARG 10 1 Y 1 D CD ARG 40 D CD ARG 10 1 Y 1 D NE ARG 40 D NE ARG 10 1 Y 1 D CZ ARG 40 D CZ ARG 10 1 Y 1 D NH1 ARG 40 D NH1 ARG 10 1 Y 1 D NH2 ARG 40 D NH2 ARG 10 1 Y 1 B GLY 85 B GLY 58 1 Y 1 D SER 31 D SER 1 1 Y 1 D THR 32 D THR 2 1 Y 1 D GLY 33 D GLY 3 1 Y 1 A ASP 68 77.54 -2.30 1 B ASP 68 74.44 -0.60 83.090 30.1275 13.770 -3.3304 -0.0000 -1.2310 -5.0827 -0.0000 8.4130 0.2439 0.2038 0.2058 1.8500 23.4130 580 12091 12073 4.8000 96.2300 1.000 1.000 0.7729 0.3000 Random 1 0.000 MOLECULAR REPLACEMENT 28.7700 0.6100 0.9000 PDB ENTRY 2E5P ML FLAT BULK SOLVENT MODEL 60.8670 0.3940 1.8500 23.4130 161 1222 0 0 1061 0.007 1085 1.060 1473 0.071 161 0.004 183 14.919 409 0.3932 0.2898 2.0361 144 2667 2811 4 91.0000 0.2511 0.2061 2.3305 156 2932 3088 4 99.0000 0.2705 0.2031 2.9353 129 2977 3106 4 99.0000 0.2066 0.1886 23.4144 151 2917 3068 4 95.0000 25.160 1.85 23.413 4HCZ 12091 12091 0.00 -3.00 1 96.4 1.85 1.92 1 81.1 phasing Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.6.4_486 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection CrystalClear data reduction d*TREK data scaling d*TREK PHF1 Tudor in complex with H3K36me3 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N covale 1.330 both C VAL 35 C C VAL 5 1_555 C M3L 36 C N M3L 6 1_555 covale 1.326 both C M3L 36 C C M3L 6 1_555 C LYS 37 C N LYS 7 1_555 covale 1.324 both D VAL 35 D C VAL 5 1_555 D M3L 36 D N M3L 6 1_555 covale 1.324 both D M3L 36 D C M3L 6 1_555 D LYS 37 D N LYS 7 1_555 TRANSCRIPTION Protein-peptide complex, Tudor, Histone binding, H3K36me3, NA, Nucleus, TRANSCRIPTION B LEU 83 B LEU 56 1 B PRO 84 B PRO 57 3.84 PHF1_HUMAN UNP 1 28 O43189 RPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPG Q6TXQ4_HUMAN UNP 2 17 Q6TXQ4 STGGVKKPHR 28 85 4HCZ 28 85 O43189 A 1 1 58 28 85 4HCZ 28 85 O43189 B 1 1 58 17 26 4HCZ 31 40 Q6TXQ4 C 2 1 10 17 26 4HCZ 31 40 Q6TXQ4 D 2 1 10 5 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLN 70 A GLN 43 A LEU 74 A LEU 47 A VAL 60 A VAL 33 A PHE 65 A PHE 38 A LEU 46 A LEU 19 A ASP 55 A ASP 28 A ASP 36 A ASP 9 A ARG 40 A ARG 13 A ILE 78 A ILE 51 A PRO 80 A PRO 53 B GLN 70 B GLN 43 B LEU 74 B LEU 47 B VAL 60 B VAL 33 B PHE 65 B PHE 38 B LEU 46 B LEU 19 B ASP 55 B ASP 28 B ASP 36 B ASP 9 B ARG 40 B ARG 13 B ILE 78 B ILE 51 B PRO 80 B PRO 53 5 C 1 2 1