0.008726
0.005038
0.000000
-0.000000
0.010076
0.000000
0.000000
-0.000000
0.008084
0.00000
0.00000
0.00000
Nguyen, G.T.T.
Gertz, M.
Steegborn, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
114.600
114.600
123.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C18 H23 N3 O4
345.393
n
N~6~-acetyl-N-(4-methyl-2-oxo-2H-chromen-7-yl)-L-lysinamide
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C3 H8 O
60.095
ISOPROPYL ALCOHOL
2-PROPANOL
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C14 H12 O4
244.243
PICEATANNOL
4-[(E)-2-(3,5-DIHYDROXYPHENYL)ETHENYL]BENZENE-1,2-DIOL
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
C
N
92
N
O
N
93
N
O
Y
94
N
C
Y
95
N
C
Y
96
N
C
Y
97
N
C
Y
98
N
C
Y
99
N
C
N
100
N
N
N
101
N
C
N
102
N
O
N
103
S
C
N
104
N
N
N
105
N
C
N
106
N
C
N
107
N
C
N
108
N
C
N
109
N
N
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
N
Y
192
N
C
Y
193
N
C
Y
194
N
N
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
S
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
N
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
S
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
N
339
N
C
N
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
N
347
N
O
N
348
N
O
N
349
N
O
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
N
368
N
C
N
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
N
385
N
O
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
R
C
N
399
N
O
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
N
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
N
449
N
O
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
N
N
463
S
C
N
464
N
C
N
465
N
O
N
466
N
C
N
467
N
C
N
468
N
C
N
469
N
O
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
Y
94
N
doub
Y
95
N
sing
N
96
N
sing
N
97
N
doub
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
doub
Y
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
Y
189
N
sing
Y
190
N
doub
Y
191
N
doub
N
192
N
sing
Y
193
N
sing
N
194
N
sing
Y
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
doub
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
Y
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
N
331
N
sing
N
332
E
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
Y
336
N
sing
Y
337
N
doub
Y
338
N
doub
N
339
N
sing
N
340
N
sing
Y
341
N
sing
N
342
N
sing
Y
343
N
doub
N
344
N
sing
Y
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
doub
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
Y
408
N
doub
Y
409
N
sing
Y
410
N
sing
N
411
N
sing
Y
412
N
doub
Y
413
N
sing
Y
414
N
sing
N
415
N
sing
Y
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
doub
N
420
N
sing
Y
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
doub
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
US
Plos One
1932-6203
7
e49761
e49761
10.1371/journal.pone.0049761
23185430
A molecular mechanism for direct sirtuin activation by resveratrol.
2012
10.2210/pdb4hd8/pdb
pdb_00004hd8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2011-09-14
RAYONIX MX-225
SINGLE WAVELENGTH
M
x-ray
1
0.918
1.0
14.1
BESSY
0.918
SYNCHROTRON
BESSY BEAMLINE 14.1
31484.219
NAD-dependent protein deacetylase sirtuin-3, mitochondrial
3.5.1.-
UNP residues 116-399
1
man
polymer
769.913
Fluor-de-Lys peptide
1
syn
polymer
65.409
ZINC ION
1
syn
non-polymer
244.243
PICEATANNOL
1
syn
non-polymer
60.095
ISOPROPYL ALCOHOL
1
syn
non-polymer
18.015
water
102
nat
water
hSIRT3, Regulatory protein SIR2 homolog 3, SIR2-like protein 3
no
no
GSSDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTL
AKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMAD
RVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHP
RSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK
GSSDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTL
AKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMAD
RVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHP
RSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK
A
polypeptide(L)
no
yes
RHK(FDL)
RHKX
F
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
SIR2L3, SIRT3
9606
Homo sapiens
469008
Escherichia coli
BL21 (DE3) Rosetta2
plasmid
pVFT3S
1
2.42
49.24
VAPOR DIFFUSION, HANGING DROP
7
200 mM NaCl, 100 mM HEPES pH 7, 10% (v/v) isopropanol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
pdbx_struct_special_symmetry
struct_conn
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2012-12-05
1
1
2013-02-20
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-10-02
REL
REL
ZN
ZINC ION
PIT
PICEATANNOL
IPA
ISOPROPYL ALCOHOL
HOH
water
coumarin-modified tetra peptide
sample
ZN
1
3
ZN
ZN
401
A
PIT
2
4
PIT
PIT
402
A
IPA
3
5
IPA
IPA
403
A
HOH
1
6
HOH
HOH
501
A
HOH
2
6
HOH
HOH
502
A
HOH
3
6
HOH
HOH
503
A
HOH
4
6
HOH
HOH
504
A
HOH
5
6
HOH
HOH
505
A
HOH
6
6
HOH
HOH
506
A
HOH
7
6
HOH
HOH
507
A
HOH
8
6
HOH
HOH
508
A
HOH
9
6
HOH
HOH
509
A
HOH
10
6
HOH
HOH
510
A
HOH
11
6
HOH
HOH
511
A
HOH
12
6
HOH
HOH
512
A
HOH
13
6
HOH
HOH
513
A
HOH
14
6
HOH
HOH
514
A
HOH
15
6
HOH
HOH
515
A
HOH
16
6
HOH
HOH
516
A
HOH
17
6
HOH
HOH
517
A
HOH
18
6
HOH
HOH
518
A
HOH
19
6
HOH
HOH
519
A
HOH
20
6
HOH
HOH
520
A
HOH
21
6
HOH
HOH
521
A
HOH
23
6
HOH
HOH
522
A
HOH
24
6
HOH
HOH
523
A
HOH
25
6
HOH
HOH
524
A
HOH
26
6
HOH
HOH
525
A
HOH
27
6
HOH
HOH
526
A
HOH
29
6
HOH
HOH
528
A
HOH
30
6
HOH
HOH
529
A
HOH
31
6
HOH
HOH
530
A
HOH
32
6
HOH
HOH
531
A
HOH
33
6
HOH
HOH
532
A
HOH
34
6
HOH
HOH
533
A
HOH
35
6
HOH
HOH
534
A
HOH
36
6
HOH
HOH
535
A
HOH
37
6
HOH
HOH
536
A
HOH
38
6
HOH
HOH
537
A
HOH
39
6
HOH
HOH
538
A
HOH
40
6
HOH
HOH
539
A
HOH
41
6
HOH
HOH
540
A
HOH
42
6
HOH
HOH
541
A
HOH
43
6
HOH
HOH
542
A
HOH
44
6
HOH
HOH
543
A
HOH
45
6
HOH
HOH
544
A
HOH
46
6
HOH
HOH
545
A
HOH
47
6
HOH
HOH
546
A
HOH
48
6
HOH
HOH
547
A
HOH
49
6
HOH
HOH
548
A
HOH
50
6
HOH
HOH
549
A
HOH
51
6
HOH
HOH
550
A
HOH
52
6
HOH
HOH
551
A
HOH
53
6
HOH
HOH
552
A
HOH
54
6
HOH
HOH
553
A
HOH
55
6
HOH
HOH
554
A
HOH
56
6
HOH
HOH
555
A
HOH
57
6
HOH
HOH
556
A
HOH
58
6
HOH
HOH
557
A
HOH
59
6
HOH
HOH
558
A
HOH
60
6
HOH
HOH
559
A
HOH
61
6
HOH
HOH
560
A
HOH
62
6
HOH
HOH
561
A
HOH
63
6
HOH
HOH
562
A
HOH
64
6
HOH
HOH
563
A
HOH
65
6
HOH
HOH
564
A
HOH
66
6
HOH
HOH
565
A
HOH
67
6
HOH
HOH
566
A
HOH
68
6
HOH
HOH
567
A
HOH
69
6
HOH
HOH
568
A
HOH
70
6
HOH
HOH
569
A
HOH
71
6
HOH
HOH
570
A
HOH
72
6
HOH
HOH
571
A
HOH
73
6
HOH
HOH
572
A
HOH
74
6
HOH
HOH
573
A
HOH
75
6
HOH
HOH
574
A
HOH
76
6
HOH
HOH
575
A
HOH
77
6
HOH
HOH
576
A
HOH
78
6
HOH
HOH
577
A
HOH
80
6
HOH
HOH
578
A
HOH
81
6
HOH
HOH
579
A
HOH
82
6
HOH
HOH
580
A
HOH
84
6
HOH
HOH
581
A
HOH
85
6
HOH
HOH
582
A
HOH
86
6
HOH
HOH
583
A
HOH
87
6
HOH
HOH
584
A
HOH
88
6
HOH
HOH
585
A
HOH
89
6
HOH
HOH
586
A
HOH
90
6
HOH
HOH
587
A
HOH
91
6
HOH
HOH
588
A
HOH
92
6
HOH
HOH
589
A
HOH
93
6
HOH
HOH
590
A
HOH
95
6
HOH
HOH
591
A
HOH
96
6
HOH
HOH
592
A
HOH
97
6
HOH
HOH
593
A
HOH
98
6
HOH
HOH
594
A
HOH
99
6
HOH
HOH
595
A
HOH
100
6
HOH
HOH
596
A
HOH
101
6
HOH
HOH
597
A
HOH
102
6
HOH
HOH
598
A
HOH
103
6
HOH
HOH
599
A
HOH
104
6
HOH
HOH
600
A
HOH
79
6
HOH
HOH
101
F
HOH
83
6
HOH
HOH
102
F
HOH
94
6
HOH
HOH
103
F
n
1
116
A
n
2
117
A
n
3
118
A
n
4
119
A
n
5
120
A
n
6
121
A
LYS
122
n
7
LYS
122
A
LEU
123
n
8
LEU
123
A
SER
124
n
9
SER
124
A
LEU
125
n
10
LEU
125
A
GLN
126
n
11
GLN
126
A
ASP
127
n
12
ASP
127
A
VAL
128
n
13
VAL
128
A
ALA
129
n
14
ALA
129
A
GLU
130
n
15
GLU
130
A
LEU
131
n
16
LEU
131
A
ILE
132
n
17
ILE
132
A
ARG
133
n
18
ARG
133
A
ALA
134
n
19
ALA
134
A
ARG
135
n
20
ARG
135
A
ALA
136
n
21
ALA
136
A
CYS
137
n
22
CYS
137
A
GLN
138
n
23
GLN
138
A
ARG
139
n
24
ARG
139
A
VAL
140
n
25
VAL
140
A
VAL
141
n
26
VAL
141
A
VAL
142
n
27
VAL
142
A
MET
143
n
28
MET
143
A
VAL
144
n
29
VAL
144
A
GLY
145
n
30
GLY
145
A
ALA
146
n
31
ALA
146
A
GLY
147
n
32
GLY
147
A
ILE
148
n
33
ILE
148
A
SER
149
n
34
SER
149
A
THR
150
n
35
THR
150
A
PRO
151
n
36
PRO
151
A
SER
152
n
37
SER
152
A
GLY
153
n
38
GLY
153
A
ILE
154
n
39
ILE
154
A
PRO
155
n
40
PRO
155
A
ASP
156
n
41
ASP
156
A
PHE
157
n
42
PHE
157
A
n
43
158
A
n
44
159
A
n
45
160
A
n
46
161
A
n
47
162
A
n
48
163
A
n
49
164
A
n
50
165
A
n
51
166
A
n
52
167
A
n
53
168
A
n
54
169
A
GLN
170
n
55
GLN
170
A
TYR
171
n
56
TYR
171
A
ASP
172
n
57
ASP
172
A
LEU
173
n
58
LEU
173
A
PRO
174
n
59
PRO
174
A
TYR
175
n
60
TYR
175
A
PRO
176
n
61
PRO
176
A
GLU
177
n
62
GLU
177
A
ALA
178
n
63
ALA
178
A
ILE
179
n
64
ILE
179
A
PHE
180
n
65
PHE
180
A
GLU
181
n
66
GLU
181
A
LEU
182
n
67
LEU
182
A
PRO
183
n
68
PRO
183
A
PHE
184
n
69
PHE
184
A
PHE
185
n
70
PHE
185
A
PHE
186
n
71
PHE
186
A
HIS
187
n
72
HIS
187
A
ASN
188
n
73
ASN
188
A
PRO
189
n
74
PRO
189
A
LYS
190
n
75
LYS
190
A
PRO
191
n
76
PRO
191
A
PHE
192
n
77
PHE
192
A
PHE
193
n
78
PHE
193
A
THR
194
n
79
THR
194
A
LEU
195
n
80
LEU
195
A
ALA
196
n
81
ALA
196
A
LYS
197
n
82
LYS
197
A
GLU
198
n
83
GLU
198
A
LEU
199
n
84
LEU
199
A
TYR
200
n
85
TYR
200
A
PRO
201
n
86
PRO
201
A
GLY
202
n
87
GLY
202
A
ASN
203
n
88
ASN
203
A
TYR
204
n
89
TYR
204
A
LYS
205
n
90
LYS
205
A
PRO
206
n
91
PRO
206
A
ASN
207
n
92
ASN
207
A
VAL
208
n
93
VAL
208
A
THR
209
n
94
THR
209
A
HIS
210
n
95
HIS
210
A
TYR
211
n
96
TYR
211
A
PHE
212
n
97
PHE
212
A
LEU
213
n
98
LEU
213
A
ARG
214
n
99
ARG
214
A
LEU
215
n
100
LEU
215
A
LEU
216
n
101
LEU
216
A
HIS
217
n
102
HIS
217
A
ASP
218
n
103
ASP
218
A
LYS
219
n
104
LYS
219
A
GLY
220
n
105
GLY
220
A
LEU
221
n
106
LEU
221
A
LEU
222
n
107
LEU
222
A
LEU
223
n
108
LEU
223
A
ARG
224
n
109
ARG
224
A
LEU
225
n
110
LEU
225
A
TYR
226
n
111
TYR
226
A
THR
227
n
112
THR
227
A
GLN
228
n
113
GLN
228
A
ASN
229
n
114
ASN
229
A
ILE
230
n
115
ILE
230
A
ASP
231
n
116
ASP
231
A
GLY
232
n
117
GLY
232
A
LEU
233
n
118
LEU
233
A
GLU
234
n
119
GLU
234
A
ARG
235
n
120
ARG
235
A
VAL
236
n
121
VAL
236
A
SER
237
n
122
SER
237
A
GLY
238
n
123
GLY
238
A
ILE
239
n
124
ILE
239
A
PRO
240
n
125
PRO
240
A
ALA
241
n
126
ALA
241
A
SER
242
n
127
SER
242
A
LYS
243
n
128
LYS
243
A
LEU
244
n
129
LEU
244
A
VAL
245
n
130
VAL
245
A
GLU
246
n
131
GLU
246
A
ALA
247
n
132
ALA
247
A
HIS
248
n
133
HIS
248
A
GLY
249
n
134
GLY
249
A
THR
250
n
135
THR
250
A
PHE
251
n
136
PHE
251
A
ALA
252
n
137
ALA
252
A
SER
253
n
138
SER
253
A
ALA
254
n
139
ALA
254
A
THR
255
n
140
THR
255
A
CYS
256
n
141
CYS
256
A
THR
257
n
142
THR
257
A
VAL
258
n
143
VAL
258
A
CYS
259
n
144
CYS
259
A
GLN
260
n
145
GLN
260
A
ARG
261
n
146
ARG
261
A
PRO
262
n
147
PRO
262
A
PHE
263
n
148
PHE
263
A
PRO
264
n
149
PRO
264
A
GLY
265
n
150
GLY
265
A
GLU
266
n
151
GLU
266
A
ASP
267
n
152
ASP
267
A
ILE
268
n
153
ILE
268
A
ARG
269
n
154
ARG
269
A
ALA
270
n
155
ALA
270
A
ASP
271
n
156
ASP
271
A
VAL
272
n
157
VAL
272
A
MET
273
n
158
MET
273
A
ALA
274
n
159
ALA
274
A
ASP
275
n
160
ASP
275
A
ARG
276
n
161
ARG
276
A
VAL
277
n
162
VAL
277
A
PRO
278
n
163
PRO
278
A
ARG
279
n
164
ARG
279
A
CYS
280
n
165
CYS
280
A
PRO
281
n
166
PRO
281
A
VAL
282
n
167
VAL
282
A
CYS
283
n
168
CYS
283
A
THR
284
n
169
THR
284
A
GLY
285
n
170
GLY
285
A
VAL
286
n
171
VAL
286
A
VAL
287
n
172
VAL
287
A
LYS
288
n
173
LYS
288
A
PRO
289
n
174
PRO
289
A
ASP
290
n
175
ASP
290
A
ILE
291
n
176
ILE
291
A
VAL
292
n
177
VAL
292
A
PHE
293
n
178
PHE
293
A
PHE
294
n
179
PHE
294
A
GLY
295
n
180
GLY
295
A
GLU
296
n
181
GLU
296
A
PRO
297
n
182
PRO
297
A
LEU
298
n
183
LEU
298
A
PRO
299
n
184
PRO
299
A
GLN
300
n
185
GLN
300
A
ARG
301
n
186
ARG
301
A
PHE
302
n
187
PHE
302
A
LEU
303
n
188
LEU
303
A
LEU
304
n
189
LEU
304
A
HIS
305
n
190
HIS
305
A
VAL
306
n
191
VAL
306
A
VAL
307
n
192
VAL
307
A
ASP
308
n
193
ASP
308
A
PHE
309
n
194
PHE
309
A
PRO
310
n
195
PRO
310
A
MET
311
n
196
MET
311
A
ALA
312
n
197
ALA
312
A
ASP
313
n
198
ASP
313
A
LEU
314
n
199
LEU
314
A
LEU
315
n
200
LEU
315
A
LEU
316
n
201
LEU
316
A
ILE
317
n
202
ILE
317
A
LEU
318
n
203
LEU
318
A
GLY
319
n
204
GLY
319
A
THR
320
n
205
THR
320
A
SER
321
n
206
SER
321
A
LEU
322
n
207
LEU
322
A
GLU
323
n
208
GLU
323
A
VAL
324
n
209
VAL
324
A
GLU
325
n
210
GLU
325
A
PRO
326
n
211
PRO
326
A
PHE
327
n
212
PHE
327
A
ALA
328
n
213
ALA
328
A
SER
329
n
214
SER
329
A
LEU
330
n
215
LEU
330
A
THR
331
n
216
THR
331
A
GLU
332
n
217
GLU
332
A
ALA
333
n
218
ALA
333
A
VAL
334
n
219
VAL
334
A
ARG
335
n
220
ARG
335
A
SER
336
n
221
SER
336
A
SER
337
n
222
SER
337
A
VAL
338
n
223
VAL
338
A
PRO
339
n
224
PRO
339
A
ARG
340
n
225
ARG
340
A
LEU
341
n
226
LEU
341
A
LEU
342
n
227
LEU
342
A
ILE
343
n
228
ILE
343
A
ASN
344
n
229
ASN
344
A
ARG
345
n
230
ARG
345
A
ASP
346
n
231
ASP
346
A
LEU
347
n
232
LEU
347
A
VAL
348
n
233
VAL
348
A
GLY
349
n
234
GLY
349
A
PRO
350
n
235
PRO
350
A
LEU
351
n
236
LEU
351
A
ALA
352
n
237
ALA
352
A
TRP
353
n
238
TRP
353
A
HIS
354
n
239
HIS
354
A
PRO
355
n
240
PRO
355
A
ARG
356
n
241
ARG
356
A
SER
357
n
242
SER
357
A
ARG
358
n
243
ARG
358
A
ASP
359
n
244
ASP
359
A
VAL
360
n
245
VAL
360
A
ALA
361
n
246
ALA
361
A
GLN
362
n
247
GLN
362
A
LEU
363
n
248
LEU
363
A
GLY
364
n
249
GLY
364
A
ASP
365
n
250
ASP
365
A
VAL
366
n
251
VAL
366
A
VAL
367
n
252
VAL
367
A
HIS
368
n
253
HIS
368
A
GLY
369
n
254
GLY
369
A
VAL
370
n
255
VAL
370
A
GLU
371
n
256
GLU
371
A
SER
372
n
257
SER
372
A
LEU
373
n
258
LEU
373
A
VAL
374
n
259
VAL
374
A
GLU
375
n
260
GLU
375
A
LEU
376
n
261
LEU
376
A
LEU
377
n
262
LEU
377
A
GLY
378
n
263
GLY
378
A
TRP
379
n
264
TRP
379
A
THR
380
n
265
THR
380
A
GLU
381
n
266
GLU
381
A
GLU
382
n
267
GLU
382
A
MET
383
n
268
MET
383
A
ARG
384
n
269
ARG
384
A
ASP
385
n
270
ASP
385
A
LEU
386
n
271
LEU
386
A
VAL
387
n
272
VAL
387
A
GLN
388
n
273
GLN
388
A
ARG
389
n
274
ARG
389
A
GLU
390
n
275
GLU
390
A
THR
391
n
276
THR
391
A
GLY
392
n
277
GLY
392
A
LYS
393
n
278
LYS
393
A
n
279
394
A
n
280
395
A
n
281
396
A
n
282
397
A
n
283
398
A
n
284
399
A
ARG
1
n
1
ARG
1
F
HIS
2
n
2
HIS
2
F
LYS
3
n
3
LYS
3
F
FDL
4
n
4
FDL
4
F
author_defined_assembly
2
dimeric
A
CYS
256
A
SG
CYS
141
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
259
A
SG
CYS
144
1_555
110.2
A
CYS
256
A
SG
CYS
141
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
280
A
SG
CYS
165
1_555
107.8
A
CYS
259
A
SG
CYS
144
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
280
A
SG
CYS
165
1_555
107.7
A
CYS
256
A
SG
CYS
141
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
168
1_555
94.4
A
CYS
259
A
SG
CYS
144
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
168
1_555
120.2
A
CYS
280
A
SG
CYS
165
1_555
A
ZN
401
C
ZN
ZN
1_555
A
CYS
283
A
SG
CYS
168
1_555
115.2
F
FDL
4
B
FDL
4
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
245
A
O
VAL
130
A
N
LEU
225
A
N
LEU
110
A
O
TYR
226
A
O
TYR
111
A
N
VAL
142
A
N
VAL
27
A
N
MET
143
A
N
MET
28
A
O
LEU
316
A
O
LEU
201
A
N
LEU
315
A
N
LEU
200
A
O
LEU
341
A
O
LEU
226
A
N
LEU
342
A
N
LEU
227
A
O
GLN
362
A
O
GLN
247
A
O
PHE
263
A
O
PHE
148
A
N
ALA
254
A
N
ALA
139
A
N
SER
253
A
N
SER
138
A
O
ASP
290
A
O
ASP
175
1
A
PIT
402
D
PIT
1
A
GLY
116
A
GLY
1
1
Y
1
A
SER
117
A
SER
2
1
Y
1
A
SER
118
A
SER
3
1
Y
1
A
ASP
119
A
ASP
4
1
Y
1
A
LYS
120
A
LYS
5
1
Y
1
A
GLY
121
A
GLY
6
1
Y
1
A
ARG
158
A
ARG
43
1
Y
1
A
SER
159
A
SER
44
1
Y
1
A
PRO
160
A
PRO
45
1
Y
1
A
GLY
161
A
GLY
46
1
Y
1
A
SER
162
A
SER
47
1
Y
1
A
GLY
163
A
GLY
48
1
Y
1
A
LEU
164
A
LEU
49
1
Y
1
A
TYR
165
A
TYR
50
1
Y
1
A
SER
166
A
SER
51
1
Y
1
A
ASN
167
A
ASN
52
1
Y
1
A
LEU
168
A
LEU
53
1
Y
1
A
GLN
169
A
GLN
54
1
Y
1
A
LEU
394
A
LEU
279
1
Y
1
A
ASP
395
A
ASP
280
1
Y
1
A
GLY
396
A
GLY
281
1
Y
1
A
PRO
397
A
PRO
282
1
Y
1
A
ASP
398
A
ASP
283
1
Y
1
A
LYS
399
A
LYS
284
1
Y
1
A
VAL
258
-104.95
-60.03
1
A
THR
284
69.41
-6.03
1
A
PRO
289
-45.36
152.67
1
A
ASP
290
-83.80
49.07
98.450
31.3997
11.880
0.3100
0.3100
-0.0000
0.3100
0.0000
-1.0000
0.9520
0.9270
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U VALUES: REFINED INDIVIDUALLY
0.2405
0.1736
0.1769
2.3000
38.7400
704
13365
14069
5.0000
99.8800
1.000
0.500
6.0660
0.1490
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.2910
0.2310
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
2.3000
38.7400
102
2227
23
0
2102
0.017
0.019
2203
1.892
2.006
3004
6.333
5.000
269
38.312
22.737
95
16.568
15.000
356
17.168
15.000
19
0.111
0.200
338
0.010
0.022
1689
0.3390
0.2040
2.3600
52
979
1031
20
99.8100
2.3
38.7
4HD8
14077
14069
0.084
1
20.0
6.9
99.9
0.487
2.3
2.4
4.3
1
7.0
99.9
data scaling
XDS
phasing
MOLREP
refinement
REFMAC
5.7.0029
data reduction
XDS
data scaling
XSCALE
Crystal structure of human Sirt3 in complex with Fluor-de-Lys peptide and piceatannol
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
A
SER
124
A
SER
9
HELX_P
A
ALA
134
A
ALA
19
1
1
11
A
ALA
146
A
ALA
31
HELX_P
A
GLY
153
A
GLY
38
5
2
8
A
TYR
175
A
TYR
60
HELX_P
A
PHE
180
A
PHE
65
5
3
6
A
GLU
181
A
GLU
66
HELX_P
A
ASN
188
A
ASN
73
1
4
8
A
PRO
189
A
PRO
74
HELX_P
A
TYR
200
A
TYR
85
1
5
12
A
ASN
207
A
ASN
92
HELX_P
A
LYS
219
A
LYS
104
1
6
13
A
GLY
232
A
GLY
117
HELX_P
A
SER
237
A
SER
122
1
7
6
A
PRO
240
A
PRO
125
HELX_P
A
SER
242
A
SER
127
5
8
3
A
GLY
265
A
GLY
150
HELX_P
A
ALA
274
A
ALA
159
1
9
10
A
PRO
299
A
PRO
184
HELX_P
A
LEU
303
A
LEU
188
5
10
5
A
LEU
304
A
LEU
189
HELX_P
A
ALA
312
A
ALA
197
1
11
9
A
PRO
326
A
PRO
211
HELX_P
A
GLU
332
A
GLU
217
1
12
7
A
GLY
349
A
GLY
234
HELX_P
A
HIS
354
A
HIS
239
1
13
6
A
ASP
365
A
ASP
250
HELX_P
A
GLY
378
A
GLY
263
1
14
14
A
TRP
379
A
TRP
264
HELX_P
A
GLY
392
A
GLY
277
1
15
14
metalc
2.386
A
CYS
256
A
SG
CYS
141
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.267
A
CYS
259
A
SG
CYS
144
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.316
A
CYS
280
A
SG
CYS
165
1_555
A
ZN
401
C
ZN
ZN
1_555
metalc
2.330
A
CYS
283
A
SG
CYS
168
1_555
A
ZN
401
C
ZN
ZN
1_555
HYDROLASE/HYDROLASE INHIBITOR
NAD-dependent deacetylase, Sirtuin, mitochondrial, inhibitor complex, piceatannol, resveratrol-like compound, HYDROLASE-HYDROLASE INHIBITOR complex
A
GLU
325
A
GLU
210
1
A
PRO
326
A
PRO
211
-2.17
SIR3_HUMAN
UNP
1
116
Q9NTG7
GSSDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTL
AKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMAD
RVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHP
RSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK
4HD8
PDB
2
1
4HD8
RHKK
116
399
4HD8
116
399
Q9NTG7
A
1
1
284
1
4
4HD8
1
4
4HD8
F
2
1
4
6
3
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
A
LEU
244
A
LEU
129
A
GLU
246
A
GLU
131
A
LEU
222
A
LEU
107
A
THR
227
A
THR
112
A
VAL
140
A
VAL
25
A
VAL
144
A
VAL
29
A
LEU
314
A
LEU
199
A
LEU
318
A
LEU
203
A
ARG
340
A
ARG
225
A
ASN
344
A
ASN
229
A
ASP
359
A
ASP
244
A
LEU
363
A
LEU
248
A
PRO
262
A
PRO
147
A
PRO
264
A
PRO
149
A
GLY
249
A
GLY
134
A
CYS
256
A
CYS
141
A
VAL
287
A
VAL
172
A
ILE
291
A
ILE
176
BINDING SITE FOR RESIDUE ZN A 401
A
ZN
401
Software
4
BINDING SITE FOR RESIDUE PIT A 402
A
PIT
402
Software
13
BINDING SITE FOR RESIDUE IPA A 403
A
IPA
403
Software
2
BINDING SITE FOR CHAIN F OF FLUOR-DE-LYS PEPTIDE
Software
21
A
CYS
256
A
CYS
141
4
1_555
A
CYS
259
A
CYS
144
4
1_555
A
CYS
280
A
CYS
165
4
1_555
A
CYS
283
A
CYS
168
4
1_555
A
GLU
181
A
GLU
66
13
1_555
A
GLU
181
A
GLU
66
13
12_555
A
PHE
294
A
PHE
179
13
1_555
A
PHE
294
A
PHE
179
13
12_555
A
GLY
295
A
GLY
180
13
12_555
A
GLY
295
A
GLY
180
13
1_555
A
HOH
596
F
HOH
13
12_555
A
HOH
600
F
HOH
13
1_555
A
HOH
600
F
HOH
13
12_555
F
LYS
3
B
LYS
3
13
12_555
F
LYS
3
B
LYS
3
13
1_555
F
FDL
4
B
FDL
4
13
12_555
F
FDL
4
B
FDL
4
13
1_555
A
GLN
300
A
GLN
185
2
1_555
A
LEU
304
A
LEU
189
2
4_555
A
TYR
175
A
TYR
60
21
12_555
A
GLU
177
A
GLU
62
21
12_555
A
PHE
180
A
PHE
65
21
1_555
A
GLU
181
A
GLU
66
21
12_555
A
HIS
248
A
HIS
133
21
1_555
A
ILE
291
A
ILE
176
21
1_555
A
VAL
292
A
VAL
177
21
1_555
A
PHE
293
A
PHE
178
21
1_555
A
PHE
294
A
PHE
179
21
1_555
A
GLY
295
A
GLY
180
21
1_555
A
GLU
296
A
GLU
181
21
1_555
A
PRO
297
A
PRO
182
21
1_555
A
LEU
298
A
LEU
183
21
1_555
A
GLU
325
A
GLU
210
21
12_555
A
PRO
326
A
PRO
211
21
1_555
A
PIT
402
D
PIT
21
1_555
A
PIT
402
D
PIT
21
12_555
A
HOH
564
F
HOH
21
1_555
F
HOH
101
G
HOH
21
1_555
F
HOH
102
G
HOH
21
1_555
F
HOH
103
G
HOH
21
1_555
155
H 3 2