0.008726 0.005038 0.000000 -0.000000 0.010076 0.000000 0.000000 -0.000000 0.008084 0.00000 0.00000 0.00000 Nguyen, G.T.T. Gertz, M. Steegborn, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 114.600 114.600 123.700 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C18 H23 N3 O4 345.393 n N~6~-acetyl-N-(4-methyl-2-oxo-2H-chromen-7-yl)-L-lysinamide L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C3 H8 O 60.095 ISOPROPYL ALCOHOL 2-PROPANOL non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C14 H12 O4 244.243 PICEATANNOL 4-[(E)-2-(3,5-DIHYDROXYPHENYL)ETHENYL]BENZENE-1,2-DIOL non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N C N 89 N C N 90 N C N 91 N C N 92 N O N 93 N O Y 94 N C Y 95 N C Y 96 N C Y 97 N C Y 98 N C Y 99 N C N 100 N N N 101 N C N 102 N O N 103 S C N 104 N N N 105 N C N 106 N C N 107 N C N 108 N C N 109 N N N 110 N C N 111 N O N 112 N C N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 S C N 138 N C N 139 N O N 140 N C N 141 N C N 142 N C N 143 N O N 144 N N N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 S C N 158 N C N 159 N O N 160 N C N 161 N C N 162 N C N 163 N O N 164 N O N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N N N 176 N C N 177 N C N 178 N O N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 N C Y 190 N C Y 191 N N Y 192 N C Y 193 N C Y 194 N N N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N O N 207 N H N 208 N H N 209 N N N 210 S C N 211 N C N 212 N O N 213 S C N 214 N C N 215 N C N 216 N C N 217 N O N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N C N 232 N C N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N N N 244 S C N 245 N C N 246 N O N 247 N C N 248 N C N 249 N C N 250 N C N 251 N O N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N N N 266 S C N 267 N C N 268 N O N 269 N C N 270 N C N 271 N C N 272 N C N 273 N N N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N S N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N N N 311 S C N 312 N C N 313 N O N 314 N C Y 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H Y 333 N C Y 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C N 339 N C N 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N C Y 346 N C N 347 N O N 348 N O N 349 N O N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C N 368 N C N 369 N C N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C N 385 N O N 386 N O N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 R C N 399 N O N 400 N C N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N N N 412 S C N 413 N C N 414 N O N 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N N Y 420 N C Y 421 N C Y 422 N C Y 423 N C Y 424 N C N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N N N 439 S C N 440 N C N 441 N O N 442 N C Y 443 N C Y 444 N C Y 445 N C Y 446 N C Y 447 N C Y 448 N C N 449 N O N 450 N O N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N N N 463 S C N 464 N C N 465 N O N 466 N C N 467 N C N 468 N C N 469 N O N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing Y 94 N doub Y 95 N sing N 96 N sing N 97 N doub Y 98 N sing Y 99 N doub N 100 N sing Y 101 N doub Y 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing Y 189 N sing Y 190 N doub Y 191 N doub N 192 N sing Y 193 N sing N 194 N sing Y 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N doub N 313 N sing Y 314 N doub N 315 N sing Y 316 N sing N 317 N sing N 318 N sing N 319 N sing Y 320 N sing Y 321 N doub N 322 N sing Y 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing N 328 N sing N 329 N sing Y 330 N doub N 331 N sing N 332 E doub N 333 N sing N 334 N sing N 335 N sing Y 336 N sing Y 337 N doub Y 338 N doub N 339 N sing N 340 N sing Y 341 N sing N 342 N sing Y 343 N doub N 344 N sing Y 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N doub N 404 N sing N 405 N sing N 406 N sing N 407 N sing Y 408 N doub Y 409 N sing Y 410 N sing N 411 N sing Y 412 N doub Y 413 N sing Y 414 N sing N 415 N sing Y 416 N sing Y 417 N doub N 418 N sing Y 419 N doub N 420 N sing Y 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N doub N 432 N sing N 433 N sing N 434 N sing N 435 N sing Y 436 N doub Y 437 N sing Y 438 N sing N 439 N sing Y 440 N doub N 441 N sing Y 442 N doub N 443 N sing Y 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N doub N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing US Plos One 1932-6203 7 e49761 e49761 10.1371/journal.pone.0049761 23185430 A molecular mechanism for direct sirtuin activation by resveratrol. 2012 10.2210/pdb4hd8/pdb pdb_00004hd8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-09-14 RAYONIX MX-225 SINGLE WAVELENGTH M x-ray 1 0.918 1.0 14.1 BESSY 0.918 SYNCHROTRON BESSY BEAMLINE 14.1 31484.219 NAD-dependent protein deacetylase sirtuin-3, mitochondrial 3.5.1.- UNP residues 116-399 1 man polymer 769.913 Fluor-de-Lys peptide 1 syn polymer 65.409 ZINC ION 1 syn non-polymer 244.243 PICEATANNOL 1 syn non-polymer 60.095 ISOPROPYL ALCOHOL 1 syn non-polymer 18.015 water 102 nat water hSIRT3, Regulatory protein SIR2 homolog 3, SIR2-like protein 3 no no GSSDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTL AKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMAD RVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHP RSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK GSSDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTL AKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMAD RVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHP RSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK A polypeptide(L) no yes RHK(FDL) RHKX F polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample SIR2L3, SIRT3 9606 Homo sapiens 469008 Escherichia coli BL21 (DE3) Rosetta2 plasmid pVFT3S 1 2.42 49.24 VAPOR DIFFUSION, HANGING DROP 7 200 mM NaCl, 100 mM HEPES pH 7, 10% (v/v) isopropanol, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle pdbx_struct_special_symmetry struct_conn struct_site repository Initial release Database references Data collection Database references Derived calculations 1 0 2012-12-05 1 1 2013-02-20 1 2 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2012-10-02 REL REL ZN ZINC ION PIT PICEATANNOL IPA ISOPROPYL ALCOHOL HOH water coumarin-modified tetra peptide sample ZN 1 3 ZN ZN 401 A PIT 2 4 PIT PIT 402 A IPA 3 5 IPA IPA 403 A HOH 1 6 HOH HOH 501 A HOH 2 6 HOH HOH 502 A HOH 3 6 HOH HOH 503 A HOH 4 6 HOH HOH 504 A HOH 5 6 HOH HOH 505 A HOH 6 6 HOH HOH 506 A HOH 7 6 HOH HOH 507 A HOH 8 6 HOH HOH 508 A HOH 9 6 HOH HOH 509 A HOH 10 6 HOH HOH 510 A HOH 11 6 HOH HOH 511 A HOH 12 6 HOH HOH 512 A HOH 13 6 HOH HOH 513 A HOH 14 6 HOH HOH 514 A HOH 15 6 HOH HOH 515 A HOH 16 6 HOH HOH 516 A HOH 17 6 HOH HOH 517 A HOH 18 6 HOH HOH 518 A HOH 19 6 HOH HOH 519 A HOH 20 6 HOH HOH 520 A HOH 21 6 HOH HOH 521 A HOH 23 6 HOH HOH 522 A HOH 24 6 HOH HOH 523 A HOH 25 6 HOH HOH 524 A HOH 26 6 HOH HOH 525 A HOH 27 6 HOH HOH 526 A HOH 29 6 HOH HOH 528 A HOH 30 6 HOH HOH 529 A HOH 31 6 HOH HOH 530 A HOH 32 6 HOH HOH 531 A HOH 33 6 HOH HOH 532 A HOH 34 6 HOH HOH 533 A HOH 35 6 HOH HOH 534 A HOH 36 6 HOH HOH 535 A HOH 37 6 HOH HOH 536 A HOH 38 6 HOH HOH 537 A HOH 39 6 HOH HOH 538 A HOH 40 6 HOH HOH 539 A HOH 41 6 HOH HOH 540 A HOH 42 6 HOH HOH 541 A HOH 43 6 HOH HOH 542 A HOH 44 6 HOH HOH 543 A HOH 45 6 HOH HOH 544 A HOH 46 6 HOH HOH 545 A HOH 47 6 HOH HOH 546 A HOH 48 6 HOH HOH 547 A HOH 49 6 HOH HOH 548 A HOH 50 6 HOH HOH 549 A HOH 51 6 HOH HOH 550 A HOH 52 6 HOH HOH 551 A HOH 53 6 HOH HOH 552 A HOH 54 6 HOH HOH 553 A HOH 55 6 HOH HOH 554 A HOH 56 6 HOH HOH 555 A HOH 57 6 HOH HOH 556 A HOH 58 6 HOH HOH 557 A HOH 59 6 HOH HOH 558 A HOH 60 6 HOH HOH 559 A HOH 61 6 HOH HOH 560 A HOH 62 6 HOH HOH 561 A HOH 63 6 HOH HOH 562 A HOH 64 6 HOH HOH 563 A HOH 65 6 HOH HOH 564 A HOH 66 6 HOH HOH 565 A HOH 67 6 HOH HOH 566 A HOH 68 6 HOH HOH 567 A HOH 69 6 HOH HOH 568 A HOH 70 6 HOH HOH 569 A HOH 71 6 HOH HOH 570 A HOH 72 6 HOH HOH 571 A HOH 73 6 HOH HOH 572 A HOH 74 6 HOH HOH 573 A HOH 75 6 HOH HOH 574 A HOH 76 6 HOH HOH 575 A HOH 77 6 HOH HOH 576 A HOH 78 6 HOH HOH 577 A HOH 80 6 HOH HOH 578 A HOH 81 6 HOH HOH 579 A HOH 82 6 HOH HOH 580 A HOH 84 6 HOH HOH 581 A HOH 85 6 HOH HOH 582 A HOH 86 6 HOH HOH 583 A HOH 87 6 HOH HOH 584 A HOH 88 6 HOH HOH 585 A HOH 89 6 HOH HOH 586 A HOH 90 6 HOH HOH 587 A HOH 91 6 HOH HOH 588 A HOH 92 6 HOH HOH 589 A HOH 93 6 HOH HOH 590 A HOH 95 6 HOH HOH 591 A HOH 96 6 HOH HOH 592 A HOH 97 6 HOH HOH 593 A HOH 98 6 HOH HOH 594 A HOH 99 6 HOH HOH 595 A HOH 100 6 HOH HOH 596 A HOH 101 6 HOH HOH 597 A HOH 102 6 HOH HOH 598 A HOH 103 6 HOH HOH 599 A HOH 104 6 HOH HOH 600 A HOH 79 6 HOH HOH 101 F HOH 83 6 HOH HOH 102 F HOH 94 6 HOH HOH 103 F n 1 116 A n 2 117 A n 3 118 A n 4 119 A n 5 120 A n 6 121 A LYS 122 n 7 LYS 122 A LEU 123 n 8 LEU 123 A SER 124 n 9 SER 124 A LEU 125 n 10 LEU 125 A GLN 126 n 11 GLN 126 A ASP 127 n 12 ASP 127 A VAL 128 n 13 VAL 128 A ALA 129 n 14 ALA 129 A GLU 130 n 15 GLU 130 A LEU 131 n 16 LEU 131 A ILE 132 n 17 ILE 132 A ARG 133 n 18 ARG 133 A ALA 134 n 19 ALA 134 A ARG 135 n 20 ARG 135 A ALA 136 n 21 ALA 136 A CYS 137 n 22 CYS 137 A GLN 138 n 23 GLN 138 A ARG 139 n 24 ARG 139 A VAL 140 n 25 VAL 140 A VAL 141 n 26 VAL 141 A VAL 142 n 27 VAL 142 A MET 143 n 28 MET 143 A VAL 144 n 29 VAL 144 A GLY 145 n 30 GLY 145 A ALA 146 n 31 ALA 146 A GLY 147 n 32 GLY 147 A ILE 148 n 33 ILE 148 A SER 149 n 34 SER 149 A THR 150 n 35 THR 150 A PRO 151 n 36 PRO 151 A SER 152 n 37 SER 152 A GLY 153 n 38 GLY 153 A ILE 154 n 39 ILE 154 A PRO 155 n 40 PRO 155 A ASP 156 n 41 ASP 156 A PHE 157 n 42 PHE 157 A n 43 158 A n 44 159 A n 45 160 A n 46 161 A n 47 162 A n 48 163 A n 49 164 A n 50 165 A n 51 166 A n 52 167 A n 53 168 A n 54 169 A GLN 170 n 55 GLN 170 A TYR 171 n 56 TYR 171 A ASP 172 n 57 ASP 172 A LEU 173 n 58 LEU 173 A PRO 174 n 59 PRO 174 A TYR 175 n 60 TYR 175 A PRO 176 n 61 PRO 176 A GLU 177 n 62 GLU 177 A ALA 178 n 63 ALA 178 A ILE 179 n 64 ILE 179 A PHE 180 n 65 PHE 180 A GLU 181 n 66 GLU 181 A LEU 182 n 67 LEU 182 A PRO 183 n 68 PRO 183 A PHE 184 n 69 PHE 184 A PHE 185 n 70 PHE 185 A PHE 186 n 71 PHE 186 A HIS 187 n 72 HIS 187 A ASN 188 n 73 ASN 188 A PRO 189 n 74 PRO 189 A LYS 190 n 75 LYS 190 A PRO 191 n 76 PRO 191 A PHE 192 n 77 PHE 192 A PHE 193 n 78 PHE 193 A THR 194 n 79 THR 194 A LEU 195 n 80 LEU 195 A ALA 196 n 81 ALA 196 A LYS 197 n 82 LYS 197 A GLU 198 n 83 GLU 198 A LEU 199 n 84 LEU 199 A TYR 200 n 85 TYR 200 A PRO 201 n 86 PRO 201 A GLY 202 n 87 GLY 202 A ASN 203 n 88 ASN 203 A TYR 204 n 89 TYR 204 A LYS 205 n 90 LYS 205 A PRO 206 n 91 PRO 206 A ASN 207 n 92 ASN 207 A VAL 208 n 93 VAL 208 A THR 209 n 94 THR 209 A HIS 210 n 95 HIS 210 A TYR 211 n 96 TYR 211 A PHE 212 n 97 PHE 212 A LEU 213 n 98 LEU 213 A ARG 214 n 99 ARG 214 A LEU 215 n 100 LEU 215 A LEU 216 n 101 LEU 216 A HIS 217 n 102 HIS 217 A ASP 218 n 103 ASP 218 A LYS 219 n 104 LYS 219 A GLY 220 n 105 GLY 220 A LEU 221 n 106 LEU 221 A LEU 222 n 107 LEU 222 A LEU 223 n 108 LEU 223 A ARG 224 n 109 ARG 224 A LEU 225 n 110 LEU 225 A TYR 226 n 111 TYR 226 A THR 227 n 112 THR 227 A GLN 228 n 113 GLN 228 A ASN 229 n 114 ASN 229 A ILE 230 n 115 ILE 230 A ASP 231 n 116 ASP 231 A GLY 232 n 117 GLY 232 A LEU 233 n 118 LEU 233 A GLU 234 n 119 GLU 234 A ARG 235 n 120 ARG 235 A VAL 236 n 121 VAL 236 A SER 237 n 122 SER 237 A GLY 238 n 123 GLY 238 A ILE 239 n 124 ILE 239 A PRO 240 n 125 PRO 240 A ALA 241 n 126 ALA 241 A SER 242 n 127 SER 242 A LYS 243 n 128 LYS 243 A LEU 244 n 129 LEU 244 A VAL 245 n 130 VAL 245 A GLU 246 n 131 GLU 246 A ALA 247 n 132 ALA 247 A HIS 248 n 133 HIS 248 A GLY 249 n 134 GLY 249 A THR 250 n 135 THR 250 A PHE 251 n 136 PHE 251 A ALA 252 n 137 ALA 252 A SER 253 n 138 SER 253 A ALA 254 n 139 ALA 254 A THR 255 n 140 THR 255 A CYS 256 n 141 CYS 256 A THR 257 n 142 THR 257 A VAL 258 n 143 VAL 258 A CYS 259 n 144 CYS 259 A GLN 260 n 145 GLN 260 A ARG 261 n 146 ARG 261 A PRO 262 n 147 PRO 262 A PHE 263 n 148 PHE 263 A PRO 264 n 149 PRO 264 A GLY 265 n 150 GLY 265 A GLU 266 n 151 GLU 266 A ASP 267 n 152 ASP 267 A ILE 268 n 153 ILE 268 A ARG 269 n 154 ARG 269 A ALA 270 n 155 ALA 270 A ASP 271 n 156 ASP 271 A VAL 272 n 157 VAL 272 A MET 273 n 158 MET 273 A ALA 274 n 159 ALA 274 A ASP 275 n 160 ASP 275 A ARG 276 n 161 ARG 276 A VAL 277 n 162 VAL 277 A PRO 278 n 163 PRO 278 A ARG 279 n 164 ARG 279 A CYS 280 n 165 CYS 280 A PRO 281 n 166 PRO 281 A VAL 282 n 167 VAL 282 A CYS 283 n 168 CYS 283 A THR 284 n 169 THR 284 A GLY 285 n 170 GLY 285 A VAL 286 n 171 VAL 286 A VAL 287 n 172 VAL 287 A LYS 288 n 173 LYS 288 A PRO 289 n 174 PRO 289 A ASP 290 n 175 ASP 290 A ILE 291 n 176 ILE 291 A VAL 292 n 177 VAL 292 A PHE 293 n 178 PHE 293 A PHE 294 n 179 PHE 294 A GLY 295 n 180 GLY 295 A GLU 296 n 181 GLU 296 A PRO 297 n 182 PRO 297 A LEU 298 n 183 LEU 298 A PRO 299 n 184 PRO 299 A GLN 300 n 185 GLN 300 A ARG 301 n 186 ARG 301 A PHE 302 n 187 PHE 302 A LEU 303 n 188 LEU 303 A LEU 304 n 189 LEU 304 A HIS 305 n 190 HIS 305 A VAL 306 n 191 VAL 306 A VAL 307 n 192 VAL 307 A ASP 308 n 193 ASP 308 A PHE 309 n 194 PHE 309 A PRO 310 n 195 PRO 310 A MET 311 n 196 MET 311 A ALA 312 n 197 ALA 312 A ASP 313 n 198 ASP 313 A LEU 314 n 199 LEU 314 A LEU 315 n 200 LEU 315 A LEU 316 n 201 LEU 316 A ILE 317 n 202 ILE 317 A LEU 318 n 203 LEU 318 A GLY 319 n 204 GLY 319 A THR 320 n 205 THR 320 A SER 321 n 206 SER 321 A LEU 322 n 207 LEU 322 A GLU 323 n 208 GLU 323 A VAL 324 n 209 VAL 324 A GLU 325 n 210 GLU 325 A PRO 326 n 211 PRO 326 A PHE 327 n 212 PHE 327 A ALA 328 n 213 ALA 328 A SER 329 n 214 SER 329 A LEU 330 n 215 LEU 330 A THR 331 n 216 THR 331 A GLU 332 n 217 GLU 332 A ALA 333 n 218 ALA 333 A VAL 334 n 219 VAL 334 A ARG 335 n 220 ARG 335 A SER 336 n 221 SER 336 A SER 337 n 222 SER 337 A VAL 338 n 223 VAL 338 A PRO 339 n 224 PRO 339 A ARG 340 n 225 ARG 340 A LEU 341 n 226 LEU 341 A LEU 342 n 227 LEU 342 A ILE 343 n 228 ILE 343 A ASN 344 n 229 ASN 344 A ARG 345 n 230 ARG 345 A ASP 346 n 231 ASP 346 A LEU 347 n 232 LEU 347 A VAL 348 n 233 VAL 348 A GLY 349 n 234 GLY 349 A PRO 350 n 235 PRO 350 A LEU 351 n 236 LEU 351 A ALA 352 n 237 ALA 352 A TRP 353 n 238 TRP 353 A HIS 354 n 239 HIS 354 A PRO 355 n 240 PRO 355 A ARG 356 n 241 ARG 356 A SER 357 n 242 SER 357 A ARG 358 n 243 ARG 358 A ASP 359 n 244 ASP 359 A VAL 360 n 245 VAL 360 A ALA 361 n 246 ALA 361 A GLN 362 n 247 GLN 362 A LEU 363 n 248 LEU 363 A GLY 364 n 249 GLY 364 A ASP 365 n 250 ASP 365 A VAL 366 n 251 VAL 366 A VAL 367 n 252 VAL 367 A HIS 368 n 253 HIS 368 A GLY 369 n 254 GLY 369 A VAL 370 n 255 VAL 370 A GLU 371 n 256 GLU 371 A SER 372 n 257 SER 372 A LEU 373 n 258 LEU 373 A VAL 374 n 259 VAL 374 A GLU 375 n 260 GLU 375 A LEU 376 n 261 LEU 376 A LEU 377 n 262 LEU 377 A GLY 378 n 263 GLY 378 A TRP 379 n 264 TRP 379 A THR 380 n 265 THR 380 A GLU 381 n 266 GLU 381 A GLU 382 n 267 GLU 382 A MET 383 n 268 MET 383 A ARG 384 n 269 ARG 384 A ASP 385 n 270 ASP 385 A LEU 386 n 271 LEU 386 A VAL 387 n 272 VAL 387 A GLN 388 n 273 GLN 388 A ARG 389 n 274 ARG 389 A GLU 390 n 275 GLU 390 A THR 391 n 276 THR 391 A GLY 392 n 277 GLY 392 A LYS 393 n 278 LYS 393 A n 279 394 A n 280 395 A n 281 396 A n 282 397 A n 283 398 A n 284 399 A ARG 1 n 1 ARG 1 F HIS 2 n 2 HIS 2 F LYS 3 n 3 LYS 3 F FDL 4 n 4 FDL 4 F author_defined_assembly 2 dimeric A CYS 256 A SG CYS 141 1_555 A ZN 401 C ZN ZN 1_555 A CYS 259 A SG CYS 144 1_555 110.2 A CYS 256 A SG CYS 141 1_555 A ZN 401 C ZN ZN 1_555 A CYS 280 A SG CYS 165 1_555 107.8 A CYS 259 A SG CYS 144 1_555 A ZN 401 C ZN ZN 1_555 A CYS 280 A SG CYS 165 1_555 107.7 A CYS 256 A SG CYS 141 1_555 A ZN 401 C ZN ZN 1_555 A CYS 283 A SG CYS 168 1_555 94.4 A CYS 259 A SG CYS 144 1_555 A ZN 401 C ZN ZN 1_555 A CYS 283 A SG CYS 168 1_555 120.2 A CYS 280 A SG CYS 165 1_555 A ZN 401 C ZN ZN 1_555 A CYS 283 A SG CYS 168 1_555 115.2 F FDL 4 B FDL 4 LYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 245 A O VAL 130 A N LEU 225 A N LEU 110 A O TYR 226 A O TYR 111 A N VAL 142 A N VAL 27 A N MET 143 A N MET 28 A O LEU 316 A O LEU 201 A N LEU 315 A N LEU 200 A O LEU 341 A O LEU 226 A N LEU 342 A N LEU 227 A O GLN 362 A O GLN 247 A O PHE 263 A O PHE 148 A N ALA 254 A N ALA 139 A N SER 253 A N SER 138 A O ASP 290 A O ASP 175 1 A PIT 402 D PIT 1 A GLY 116 A GLY 1 1 Y 1 A SER 117 A SER 2 1 Y 1 A SER 118 A SER 3 1 Y 1 A ASP 119 A ASP 4 1 Y 1 A LYS 120 A LYS 5 1 Y 1 A GLY 121 A GLY 6 1 Y 1 A ARG 158 A ARG 43 1 Y 1 A SER 159 A SER 44 1 Y 1 A PRO 160 A PRO 45 1 Y 1 A GLY 161 A GLY 46 1 Y 1 A SER 162 A SER 47 1 Y 1 A GLY 163 A GLY 48 1 Y 1 A LEU 164 A LEU 49 1 Y 1 A TYR 165 A TYR 50 1 Y 1 A SER 166 A SER 51 1 Y 1 A ASN 167 A ASN 52 1 Y 1 A LEU 168 A LEU 53 1 Y 1 A GLN 169 A GLN 54 1 Y 1 A LEU 394 A LEU 279 1 Y 1 A ASP 395 A ASP 280 1 Y 1 A GLY 396 A GLY 281 1 Y 1 A PRO 397 A PRO 282 1 Y 1 A ASP 398 A ASP 283 1 Y 1 A LYS 399 A LYS 284 1 Y 1 A VAL 258 -104.95 -60.03 1 A THR 284 69.41 -6.03 1 A PRO 289 -45.36 152.67 1 A ASP 290 -83.80 49.07 98.450 31.3997 11.880 0.3100 0.3100 -0.0000 0.3100 0.0000 -1.0000 0.9520 0.9270 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U VALUES: REFINED INDIVIDUALLY 0.2405 0.1736 0.1769 2.3000 38.7400 704 13365 14069 5.0000 99.8800 1.000 0.500 6.0660 0.1490 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.2910 0.2310 0.8000 0.8000 1.2000 MAXIMUM LIKELIHOOD MASK 2.3000 38.7400 102 2227 23 0 2102 0.017 0.019 2203 1.892 2.006 3004 6.333 5.000 269 38.312 22.737 95 16.568 15.000 356 17.168 15.000 19 0.111 0.200 338 0.010 0.022 1689 0.3390 0.2040 2.3600 52 979 1031 20 99.8100 2.3 38.7 4HD8 14077 14069 0.084 1 20.0 6.9 99.9 0.487 2.3 2.4 4.3 1 7.0 99.9 data scaling XDS phasing MOLREP refinement REFMAC 5.7.0029 data reduction XDS data scaling XSCALE Crystal structure of human Sirt3 in complex with Fluor-de-Lys peptide and piceatannol 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 6 N N A SER 124 A SER 9 HELX_P A ALA 134 A ALA 19 1 1 11 A ALA 146 A ALA 31 HELX_P A GLY 153 A GLY 38 5 2 8 A TYR 175 A TYR 60 HELX_P A PHE 180 A PHE 65 5 3 6 A GLU 181 A GLU 66 HELX_P A ASN 188 A ASN 73 1 4 8 A PRO 189 A PRO 74 HELX_P A TYR 200 A TYR 85 1 5 12 A ASN 207 A ASN 92 HELX_P A LYS 219 A LYS 104 1 6 13 A GLY 232 A GLY 117 HELX_P A SER 237 A SER 122 1 7 6 A PRO 240 A PRO 125 HELX_P A SER 242 A SER 127 5 8 3 A GLY 265 A GLY 150 HELX_P A ALA 274 A ALA 159 1 9 10 A PRO 299 A PRO 184 HELX_P A LEU 303 A LEU 188 5 10 5 A LEU 304 A LEU 189 HELX_P A ALA 312 A ALA 197 1 11 9 A PRO 326 A PRO 211 HELX_P A GLU 332 A GLU 217 1 12 7 A GLY 349 A GLY 234 HELX_P A HIS 354 A HIS 239 1 13 6 A ASP 365 A ASP 250 HELX_P A GLY 378 A GLY 263 1 14 14 A TRP 379 A TRP 264 HELX_P A GLY 392 A GLY 277 1 15 14 metalc 2.386 A CYS 256 A SG CYS 141 1_555 A ZN 401 C ZN ZN 1_555 metalc 2.267 A CYS 259 A SG CYS 144 1_555 A ZN 401 C ZN ZN 1_555 metalc 2.316 A CYS 280 A SG CYS 165 1_555 A ZN 401 C ZN ZN 1_555 metalc 2.330 A CYS 283 A SG CYS 168 1_555 A ZN 401 C ZN ZN 1_555 HYDROLASE/HYDROLASE INHIBITOR NAD-dependent deacetylase, Sirtuin, mitochondrial, inhibitor complex, piceatannol, resveratrol-like compound, HYDROLASE-HYDROLASE INHIBITOR complex A GLU 325 A GLU 210 1 A PRO 326 A PRO 211 -2.17 SIR3_HUMAN UNP 1 116 Q9NTG7 GSSDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTL AKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMAD RVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHP RSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK 4HD8 PDB 2 1 4HD8 RHKK 116 399 4HD8 116 399 Q9NTG7 A 1 1 284 1 4 4HD8 1 4 4HD8 F 2 1 4 6 3 parallel parallel parallel parallel parallel anti-parallel anti-parallel A LEU 244 A LEU 129 A GLU 246 A GLU 131 A LEU 222 A LEU 107 A THR 227 A THR 112 A VAL 140 A VAL 25 A VAL 144 A VAL 29 A LEU 314 A LEU 199 A LEU 318 A LEU 203 A ARG 340 A ARG 225 A ASN 344 A ASN 229 A ASP 359 A ASP 244 A LEU 363 A LEU 248 A PRO 262 A PRO 147 A PRO 264 A PRO 149 A GLY 249 A GLY 134 A CYS 256 A CYS 141 A VAL 287 A VAL 172 A ILE 291 A ILE 176 BINDING SITE FOR RESIDUE ZN A 401 A ZN 401 Software 4 BINDING SITE FOR RESIDUE PIT A 402 A PIT 402 Software 13 BINDING SITE FOR RESIDUE IPA A 403 A IPA 403 Software 2 BINDING SITE FOR CHAIN F OF FLUOR-DE-LYS PEPTIDE Software 21 A CYS 256 A CYS 141 4 1_555 A CYS 259 A CYS 144 4 1_555 A CYS 280 A CYS 165 4 1_555 A CYS 283 A CYS 168 4 1_555 A GLU 181 A GLU 66 13 1_555 A GLU 181 A GLU 66 13 12_555 A PHE 294 A PHE 179 13 1_555 A PHE 294 A PHE 179 13 12_555 A GLY 295 A GLY 180 13 12_555 A GLY 295 A GLY 180 13 1_555 A HOH 596 F HOH 13 12_555 A HOH 600 F HOH 13 1_555 A HOH 600 F HOH 13 12_555 F LYS 3 B LYS 3 13 12_555 F LYS 3 B LYS 3 13 1_555 F FDL 4 B FDL 4 13 12_555 F FDL 4 B FDL 4 13 1_555 A GLN 300 A GLN 185 2 1_555 A LEU 304 A LEU 189 2 4_555 A TYR 175 A TYR 60 21 12_555 A GLU 177 A GLU 62 21 12_555 A PHE 180 A PHE 65 21 1_555 A GLU 181 A GLU 66 21 12_555 A HIS 248 A HIS 133 21 1_555 A ILE 291 A ILE 176 21 1_555 A VAL 292 A VAL 177 21 1_555 A PHE 293 A PHE 178 21 1_555 A PHE 294 A PHE 179 21 1_555 A GLY 295 A GLY 180 21 1_555 A GLU 296 A GLU 181 21 1_555 A PRO 297 A PRO 182 21 1_555 A LEU 298 A LEU 183 21 1_555 A GLU 325 A GLU 210 21 12_555 A PRO 326 A PRO 211 21 1_555 A PIT 402 D PIT 21 1_555 A PIT 402 D PIT 21 12_555 A HOH 564 F HOH 21 1_555 F HOH 101 G HOH 21 1_555 F HOH 102 G HOH 21 1_555 F HOH 103 G HOH 21 1_555 155 H 3 2