0.015510
0.000000
0.000000
0.000000
0.010001
0.000000
0.000000
0.000000
0.014354
0.00000
0.00000
0.00000
Springer, T.
Yu, Y.
Zhu, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
64.476
99.988
69.668
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
TO BE PUBLISHED
0353
A Different Fold with an Integrin-Binding Loop Specialized for Flexibility in Mucosal Addressin Cell Adhesion Molecule-1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2003-03-31
ADSC QUANTUM 315
Cryogenically-cooled double crystal Si(111)
monochromator.
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
24-ID-C
APS
1.000
SYNCHROTRON
APS BEAMLINE 24-ID-C
22348.314
Mucosal addressin cell adhesion molecule 1
1
man
polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
18.015
water
247
nat
water
MAdCAM-1, hMAdCAM-1
no
no
VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT
FQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVL
FRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHHHHHHH
VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT
FQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVL
FRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLHHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Chinese hamster
sample
MADCAM1
9606
Homo sapiens
10029
OVARY
Cricetulus griseus
Lec3.2.8.1
1
2.51
51.04
VAPOR DIFFUSION, HANGING DROP
7.5
10% PEG4K, 0.5M Li2SO4, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Data collection
Database references
Derived calculations
Structure summary
1
0
2013-01-23
1
1
2020-07-29
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_ref_seq_dif.details
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
RCSB
Y
RCSB
2012-10-02
REL
REL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
HOH
water
NAG
2061
2
NAG
NAG
2061
A
HOH
1
3
HOH
HOH
401
A
HOH
2
3
HOH
HOH
402
A
HOH
3
3
HOH
HOH
403
A
HOH
4
3
HOH
HOH
404
A
HOH
5
3
HOH
HOH
405
A
HOH
6
3
HOH
HOH
406
A
HOH
7
3
HOH
HOH
407
A
HOH
8
3
HOH
HOH
408
A
HOH
9
3
HOH
HOH
409
A
HOH
10
3
HOH
HOH
410
A
HOH
11
3
HOH
HOH
411
A
HOH
12
3
HOH
HOH
412
A
HOH
13
3
HOH
HOH
413
A
HOH
14
3
HOH
HOH
414
A
HOH
15
3
HOH
HOH
415
A
HOH
16
3
HOH
HOH
416
A
HOH
17
3
HOH
HOH
417
A
HOH
18
3
HOH
HOH
418
A
HOH
19
3
HOH
HOH
419
A
HOH
20
3
HOH
HOH
420
A
HOH
21
3
HOH
HOH
421
A
HOH
22
3
HOH
HOH
422
A
HOH
23
3
HOH
HOH
423
A
HOH
24
3
HOH
HOH
424
A
HOH
25
3
HOH
HOH
425
A
HOH
26
3
HOH
HOH
426
A
HOH
27
3
HOH
HOH
427
A
HOH
28
3
HOH
HOH
428
A
HOH
29
3
HOH
HOH
429
A
HOH
30
3
HOH
HOH
430
A
HOH
31
3
HOH
HOH
431
A
HOH
32
3
HOH
HOH
432
A
HOH
33
3
HOH
HOH
433
A
HOH
34
3
HOH
HOH
434
A
HOH
35
3
HOH
HOH
435
A
HOH
36
3
HOH
HOH
436
A
HOH
37
3
HOH
HOH
437
A
HOH
38
3
HOH
HOH
438
A
HOH
39
3
HOH
HOH
439
A
HOH
40
3
HOH
HOH
440
A
HOH
41
3
HOH
HOH
441
A
HOH
42
3
HOH
HOH
442
A
HOH
43
3
HOH
HOH
443
A
HOH
44
3
HOH
HOH
444
A
HOH
45
3
HOH
HOH
445
A
HOH
46
3
HOH
HOH
446
A
HOH
47
3
HOH
HOH
447
A
HOH
48
3
HOH
HOH
448
A
HOH
49
3
HOH
HOH
449
A
HOH
50
3
HOH
HOH
450
A
HOH
51
3
HOH
HOH
451
A
HOH
52
3
HOH
HOH
452
A
HOH
53
3
HOH
HOH
453
A
HOH
54
3
HOH
HOH
454
A
HOH
55
3
HOH
HOH
455
A
HOH
56
3
HOH
HOH
456
A
HOH
57
3
HOH
HOH
457
A
HOH
58
3
HOH
HOH
458
A
HOH
59
3
HOH
HOH
459
A
HOH
60
3
HOH
HOH
460
A
HOH
61
3
HOH
HOH
461
A
HOH
62
3
HOH
HOH
462
A
HOH
63
3
HOH
HOH
463
A
HOH
64
3
HOH
HOH
464
A
HOH
65
3
HOH
HOH
465
A
HOH
66
3
HOH
HOH
466
A
HOH
67
3
HOH
HOH
467
A
HOH
68
3
HOH
HOH
468
A
HOH
69
3
HOH
HOH
469
A
HOH
70
3
HOH
HOH
470
A
HOH
71
3
HOH
HOH
471
A
HOH
72
3
HOH
HOH
472
A
HOH
73
3
HOH
HOH
473
A
HOH
74
3
HOH
HOH
474
A
HOH
75
3
HOH
HOH
475
A
HOH
77
3
HOH
HOH
476
A
HOH
78
3
HOH
HOH
477
A
HOH
79
3
HOH
HOH
478
A
HOH
80
3
HOH
HOH
479
A
HOH
81
3
HOH
HOH
480
A
HOH
82
3
HOH
HOH
481
A
HOH
83
3
HOH
HOH
482
A
HOH
84
3
HOH
HOH
483
A
HOH
85
3
HOH
HOH
484
A
HOH
86
3
HOH
HOH
485
A
HOH
87
3
HOH
HOH
486
A
HOH
88
3
HOH
HOH
487
A
HOH
89
3
HOH
HOH
488
A
HOH
90
3
HOH
HOH
489
A
HOH
91
3
HOH
HOH
490
A
HOH
92
3
HOH
HOH
491
A
HOH
93
3
HOH
HOH
492
A
HOH
94
3
HOH
HOH
493
A
HOH
95
3
HOH
HOH
494
A
HOH
96
3
HOH
HOH
495
A
HOH
97
3
HOH
HOH
496
A
HOH
98
3
HOH
HOH
497
A
HOH
99
3
HOH
HOH
498
A
HOH
100
3
HOH
HOH
499
A
HOH
101
3
HOH
HOH
500
A
HOH
102
3
HOH
HOH
501
A
HOH
103
3
HOH
HOH
502
A
HOH
104
3
HOH
HOH
503
A
HOH
105
3
HOH
HOH
504
A
HOH
107
3
HOH
HOH
505
A
HOH
108
3
HOH
HOH
506
A
HOH
109
3
HOH
HOH
507
A
HOH
110
3
HOH
HOH
508
A
HOH
111
3
HOH
HOH
509
A
HOH
112
3
HOH
HOH
510
A
HOH
113
3
HOH
HOH
511
A
HOH
114
3
HOH
HOH
512
A
HOH
115
3
HOH
HOH
513
A
HOH
116
3
HOH
HOH
514
A
HOH
118
3
HOH
HOH
515
A
HOH
120
3
HOH
HOH
516
A
HOH
121
3
HOH
HOH
517
A
HOH
122
3
HOH
HOH
518
A
HOH
123
3
HOH
HOH
519
A
HOH
124
3
HOH
HOH
520
A
HOH
125
3
HOH
HOH
521
A
HOH
126
3
HOH
HOH
522
A
HOH
127
3
HOH
HOH
523
A
HOH
128
3
HOH
HOH
524
A
HOH
129
3
HOH
HOH
525
A
HOH
130
3
HOH
HOH
526
A
HOH
131
3
HOH
HOH
527
A
HOH
132
3
HOH
HOH
528
A
HOH
133
3
HOH
HOH
529
A
HOH
134
3
HOH
HOH
530
A
HOH
135
3
HOH
HOH
531
A
HOH
136
3
HOH
HOH
532
A
HOH
137
3
HOH
HOH
533
A
HOH
138
3
HOH
HOH
534
A
HOH
139
3
HOH
HOH
535
A
HOH
140
3
HOH
HOH
536
A
HOH
141
3
HOH
HOH
537
A
HOH
142
3
HOH
HOH
538
A
HOH
143
3
HOH
HOH
539
A
HOH
144
3
HOH
HOH
540
A
HOH
145
3
HOH
HOH
541
A
HOH
146
3
HOH
HOH
542
A
HOH
147
3
HOH
HOH
543
A
HOH
148
3
HOH
HOH
544
A
HOH
149
3
HOH
HOH
545
A
HOH
150
3
HOH
HOH
546
A
HOH
151
3
HOH
HOH
547
A
HOH
152
3
HOH
HOH
548
A
HOH
153
3
HOH
HOH
549
A
HOH
154
3
HOH
HOH
550
A
HOH
155
3
HOH
HOH
551
A
HOH
156
3
HOH
HOH
552
A
HOH
157
3
HOH
HOH
553
A
HOH
158
3
HOH
HOH
554
A
HOH
159
3
HOH
HOH
555
A
HOH
161
3
HOH
HOH
556
A
HOH
162
3
HOH
HOH
557
A
HOH
163
3
HOH
HOH
558
A
HOH
164
3
HOH
HOH
559
A
HOH
165
3
HOH
HOH
560
A
HOH
166
3
HOH
HOH
561
A
HOH
167
3
HOH
HOH
562
A
HOH
168
3
HOH
HOH
563
A
HOH
169
3
HOH
HOH
564
A
HOH
170
3
HOH
HOH
565
A
HOH
171
3
HOH
HOH
566
A
HOH
172
3
HOH
HOH
567
A
HOH
173
3
HOH
HOH
568
A
HOH
174
3
HOH
HOH
569
A
HOH
175
3
HOH
HOH
570
A
HOH
176
3
HOH
HOH
571
A
HOH
177
3
HOH
HOH
572
A
HOH
178
3
HOH
HOH
573
A
HOH
180
3
HOH
HOH
574
A
HOH
181
3
HOH
HOH
575
A
HOH
182
3
HOH
HOH
576
A
HOH
183
3
HOH
HOH
577
A
HOH
184
3
HOH
HOH
578
A
HOH
185
3
HOH
HOH
579
A
HOH
186
3
HOH
HOH
580
A
HOH
187
3
HOH
HOH
581
A
HOH
188
3
HOH
HOH
582
A
HOH
189
3
HOH
HOH
583
A
HOH
190
3
HOH
HOH
584
A
HOH
192
3
HOH
HOH
585
A
HOH
193
3
HOH
HOH
586
A
HOH
194
3
HOH
HOH
587
A
HOH
195
3
HOH
HOH
588
A
HOH
196
3
HOH
HOH
589
A
HOH
197
3
HOH
HOH
590
A
HOH
198
3
HOH
HOH
591
A
HOH
199
3
HOH
HOH
592
A
HOH
200
3
HOH
HOH
593
A
HOH
201
3
HOH
HOH
594
A
HOH
202
3
HOH
HOH
595
A
HOH
203
3
HOH
HOH
596
A
HOH
204
3
HOH
HOH
597
A
HOH
205
3
HOH
HOH
598
A
HOH
206
3
HOH
HOH
599
A
HOH
207
3
HOH
HOH
600
A
HOH
208
3
HOH
HOH
601
A
HOH
209
3
HOH
HOH
602
A
HOH
210
3
HOH
HOH
603
A
HOH
211
3
HOH
HOH
604
A
HOH
212
3
HOH
HOH
605
A
HOH
213
3
HOH
HOH
606
A
HOH
214
3
HOH
HOH
607
A
HOH
215
3
HOH
HOH
608
A
HOH
217
3
HOH
HOH
609
A
HOH
219
3
HOH
HOH
610
A
HOH
221
3
HOH
HOH
611
A
HOH
222
3
HOH
HOH
612
A
HOH
223
3
HOH
HOH
613
A
HOH
224
3
HOH
HOH
614
A
HOH
225
3
HOH
HOH
615
A
HOH
226
3
HOH
HOH
616
A
HOH
228
3
HOH
HOH
617
A
HOH
229
3
HOH
HOH
618
A
HOH
230
3
HOH
HOH
619
A
HOH
231
3
HOH
HOH
620
A
HOH
232
3
HOH
HOH
621
A
HOH
233
3
HOH
HOH
622
A
HOH
234
3
HOH
HOH
623
A
HOH
235
3
HOH
HOH
624
A
HOH
236
3
HOH
HOH
625
A
HOH
237
3
HOH
HOH
626
A
HOH
238
3
HOH
HOH
627
A
HOH
239
3
HOH
HOH
628
A
HOH
240
3
HOH
HOH
629
A
HOH
241
3
HOH
HOH
630
A
HOH
242
3
HOH
HOH
631
A
HOH
243
3
HOH
HOH
632
A
HOH
244
3
HOH
HOH
633
A
HOH
245
3
HOH
HOH
634
A
HOH
246
3
HOH
HOH
635
A
HOH
247
3
HOH
HOH
636
A
HOH
248
3
HOH
HOH
637
A
HOH
249
3
HOH
HOH
638
A
HOH
250
3
HOH
HOH
639
A
HOH
251
3
HOH
HOH
640
A
HOH
252
3
HOH
HOH
641
A
HOH
253
3
HOH
HOH
642
A
HOH
254
3
HOH
HOH
643
A
HOH
255
3
HOH
HOH
644
A
HOH
256
3
HOH
HOH
645
A
HOH
257
3
HOH
HOH
646
A
HOH
258
3
HOH
HOH
647
A
VAL
1
n
1
VAL
1
A
LYS
2
n
2
LYS
2
A
PRO
3
n
3
PRO
3
A
LEU
4
n
4
LEU
4
A
GLN
5
n
5
GLN
5
A
VAL
6
n
6
VAL
6
A
GLU
7
n
7
GLU
7
A
PRO
8
n
8
PRO
8
A
PRO
9
n
9
PRO
9
A
GLU
10
n
10
GLU
10
A
PRO
11
n
11
PRO
11
A
VAL
12
n
12
VAL
12
A
VAL
13
n
13
VAL
13
A
ALA
14
n
14
ALA
14
A
VAL
15
n
15
VAL
15
A
ALA
16
n
16
ALA
16
A
LEU
17
n
17
LEU
17
A
GLY
18
n
18
GLY
18
A
ALA
19
n
19
ALA
19
A
SER
20
n
20
SER
20
A
ARG
21
n
21
ARG
21
A
GLN
22
n
22
GLN
22
A
LEU
23
n
23
LEU
23
A
THR
24
n
24
THR
24
A
CYS
25
n
25
CYS
25
A
ARG
26
n
26
ARG
26
A
LEU
27
n
27
LEU
27
A
ALA
28
n
28
ALA
28
A
CYS
29
n
29
CYS
29
A
ALA
30
n
30
ALA
30
A
ASP
31
n
31
ASP
31
A
ARG
32
n
32
ARG
32
A
GLY
33
n
33
GLY
33
A
ALA
34
n
34
ALA
34
A
SER
35
n
35
SER
35
A
VAL
36
n
36
VAL
36
A
GLN
37
n
37
GLN
37
A
TRP
38
n
38
TRP
38
A
ARG
39
n
39
ARG
39
A
GLY
40
n
40
GLY
40
A
LEU
41
n
41
LEU
41
A
ASP
42
n
42
ASP
42
A
THR
43
n
43
THR
43
A
SER
44
n
44
SER
44
A
LEU
45
n
45
LEU
45
A
GLY
46
n
46
GLY
46
A
ALA
47
n
47
ALA
47
A
VAL
48
n
48
VAL
48
A
GLN
49
n
49
GLN
49
A
SER
50
n
50
SER
50
A
ASP
51
n
51
ASP
51
A
THR
52
n
52
THR
52
A
GLY
53
n
53
GLY
53
A
ARG
54
n
54
ARG
54
A
SER
55
n
55
SER
55
A
VAL
56
n
56
VAL
56
A
LEU
57
n
57
LEU
57
A
THR
58
n
58
THR
58
A
VAL
59
n
59
VAL
59
A
ARG
60
n
60
ARG
60
A
ASN
61
n
61
ASN
61
A
ALA
62
n
62
ALA
62
A
SER
63
n
63
SER
63
A
LEU
64
n
64
LEU
64
A
SER
65
n
65
SER
65
A
ALA
66
n
66
ALA
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
THR
69
n
69
THR
69
A
ARG
70
n
70
ARG
70
A
VAL
71
n
71
VAL
71
A
CYS
72
n
72
CYS
72
A
VAL
73
n
73
VAL
73
A
GLY
74
n
74
GLY
74
A
SER
75
n
75
SER
75
A
CYS
76
n
76
CYS
76
A
GLY
77
n
77
GLY
77
A
GLY
78
n
78
GLY
78
A
ARG
79
n
79
ARG
79
A
THR
80
n
80
THR
80
A
PHE
81
n
81
PHE
81
A
GLN
82
n
82
GLN
82
A
HIS
83
n
83
HIS
83
A
THR
84
n
84
THR
84
A
VAL
85
n
85
VAL
85
A
GLN
86
n
86
GLN
86
A
LEU
87
n
87
LEU
87
A
LEU
88
n
88
LEU
88
A
VAL
89
n
89
VAL
89
A
TYR
90
n
90
TYR
90
A
ALA
91
n
91
ALA
91
A
PHE
92
n
92
PHE
92
A
PRO
93
n
93
PRO
93
A
ASN
94
n
94
ASN
94
A
GLN
95
n
95
GLN
95
A
LEU
96
n
96
LEU
96
A
THR
97
n
97
THR
97
A
VAL
98
n
98
VAL
98
A
SER
99
n
99
SER
99
A
PRO
100
n
100
PRO
100
A
ALA
101
n
101
ALA
101
A
ALA
102
n
102
ALA
102
A
LEU
103
n
103
LEU
103
A
VAL
104
n
104
VAL
104
A
PRO
105
n
105
PRO
105
A
GLY
106
n
106
GLY
106
A
ASP
107
n
107
ASP
107
A
PRO
108
n
108
PRO
108
A
GLU
109
n
109
GLU
109
A
VAL
110
n
110
VAL
110
A
ALA
111
n
111
ALA
111
A
CYS
112
n
112
CYS
112
A
THR
113
n
113
THR
113
A
ALA
114
n
114
ALA
114
A
HIS
115
n
115
HIS
115
A
LYS
116
n
116
LYS
116
A
VAL
117
n
117
VAL
117
A
THR
118
n
118
THR
118
A
PRO
119
n
119
PRO
119
A
VAL
120
n
120
VAL
120
A
ASP
121
n
121
ASP
121
A
PRO
122
n
122
PRO
122
A
ASN
123
n
123
ASN
123
A
ALA
124
n
124
ALA
124
A
LEU
125
n
125
LEU
125
A
SER
126
n
126
SER
126
A
PHE
127
n
127
PHE
127
A
SER
128
n
128
SER
128
A
LEU
129
n
129
LEU
129
A
LEU
130
n
130
LEU
130
A
VAL
131
n
131
VAL
131
A
GLY
132
n
132
GLY
132
A
GLY
133
n
133
GLY
133
A
GLN
134
n
134
GLN
134
A
GLU
135
n
135
GLU
135
A
LEU
136
n
136
LEU
136
A
GLU
137
n
137
GLU
137
A
GLY
138
n
138
GLY
138
A
ALA
139
n
139
ALA
139
A
GLN
140
n
140
GLN
140
A
ALA
141
n
141
ALA
141
A
LEU
142
n
142
LEU
142
A
GLY
143
n
143
GLY
143
A
PRO
144
n
144
PRO
144
A
GLU
145
n
145
GLU
145
A
VAL
146
n
146
VAL
146
A
GLN
147
n
147
GLN
147
A
GLU
148
n
148
GLU
148
A
GLU
149
n
149
GLU
149
A
GLU
150
n
150
GLU
150
A
GLU
151
n
151
GLU
151
A
n
152
152
A
n
153
153
A
n
154
154
A
n
155
155
A
n
156
156
A
GLU
157
n
157
GLU
157
A
ASP
158
n
158
ASP
158
A
VAL
159
n
159
VAL
159
A
LEU
160
n
160
LEU
160
A
PHE
161
n
161
PHE
161
A
ARG
162
n
162
ARG
162
A
VAL
163
n
163
VAL
163
A
THR
164
n
164
THR
164
A
GLU
165
n
165
GLU
165
A
ARG
166
n
166
ARG
166
A
TRP
167
n
167
TRP
167
A
ARG
168
n
168
ARG
168
A
LEU
169
n
169
LEU
169
A
PRO
170
n
170
PRO
170
A
PRO
171
n
171
PRO
171
A
LEU
172
n
172
LEU
172
A
GLY
173
n
173
GLY
173
A
THR
174
n
174
THR
174
A
PRO
175
n
175
PRO
175
A
VAL
176
n
176
VAL
176
A
PRO
177
n
177
PRO
177
A
PRO
178
n
178
PRO
178
A
ALA
179
n
179
ALA
179
A
LEU
180
n
180
LEU
180
A
TYR
181
n
181
TYR
181
A
CYS
182
n
182
CYS
182
A
GLN
183
n
183
GLN
183
A
ALA
184
n
184
ALA
184
A
THR
185
n
185
THR
185
A
MET
186
n
186
MET
186
A
ARG
187
n
187
ARG
187
A
LEU
188
n
188
LEU
188
A
PRO
189
n
189
PRO
189
A
GLY
190
n
190
GLY
190
A
LEU
191
n
191
LEU
191
A
GLU
192
n
192
GLU
192
A
LEU
193
n
193
LEU
193
A
SER
194
n
194
SER
194
A
HIS
195
n
195
HIS
195
A
ARG
196
n
196
ARG
196
A
GLN
197
n
197
GLN
197
A
ALA
198
n
198
ALA
198
A
ILE
199
n
199
ILE
199
A
PRO
200
n
200
PRO
200
A
VAL
201
n
201
VAL
201
A
LEU
202
n
202
LEU
202
A
HIS
203
n
203
HIS
203
A
n
204
204
A
n
205
205
A
n
206
206
A
n
207
207
A
n
208
208
A
n
209
209
A
7.5499
-1.9417
4.2119
2.3823
-1.8114
6.1738
-0.0784
0.4824
0.2820
0.0725
-0.1205
-0.3967
-0.3896
1.0310
0.1681
0.1473
-0.0523
-0.0173
0.2362
0.0388
0.1534
refined
48.7540
64.9727
31.5211
X-RAY DIFFRACTION
5.4713
-0.8653
0.6907
7.3440
0.4575
5.7867
-0.0233
-0.1102
-0.1591
0.3286
-0.0435
0.0281
0.1113
0.4314
0.0638
0.1361
-0.0042
-0.0144
0.1775
0.0238
0.1137
refined
53.3419
54.3180
37.8851
X-RAY DIFFRACTION
5.7936
-0.3693
5.0566
2.7987
-0.2008
6.4959
0.2335
0.0358
-0.3225
-0.1408
0.0267
0.0514
0.2559
0.2016
-0.2551
0.1688
-0.0458
-0.0193
0.1149
0.0311
0.1361
refined
47.9051
58.4656
37.1132
X-RAY DIFFRACTION
5.1885
-0.8446
2.4305
0.3203
-0.8099
4.3620
0.0372
0.1243
0.0893
0.0714
-0.0872
0.0390
-0.0859
-0.3672
0.0194
0.1597
-0.0029
-0.0163
0.1089
-0.0315
0.1591
refined
21.5943
69.2982
19.0947
X-RAY DIFFRACTION
2.6877
-1.9539
0.7282
3.9277
-0.6264
1.9271
-0.0248
-0.1241
-0.0409
0.2080
-0.0131
0.1375
-0.1819
-0.1926
0.0614
0.1181
-0.0018
0.0272
0.1242
-0.0135
0.0916
refined
20.5246
75.9852
23.6972
X-RAY DIFFRACTION
7.5341
-4.5095
2.6752
3.0616
-2.9110
4.6085
-0.1022
-0.4424
-0.7398
0.0201
0.3421
0.5991
0.3585
-0.4072
-0.1328
0.1667
-0.0522
0.0448
0.1743
0.0011
0.1730
refined
16.7166
67.5962
25.1133
X-RAY DIFFRACTION
5.1489
-2.1577
2.2202
2.6424
-1.7409
4.5480
-0.0607
0.2093
0.2013
-0.0626
0.0121
0.0886
-0.4905
-0.3316
0.0522
0.1631
0.0407
0.0055
0.1104
0.0044
0.1169
refined
23.4961
77.4720
16.4713
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain A and resseq 1:20)
X-RAY DIFFRACTION
2
(chain A and resseq 21:59)
X-RAY DIFFRACTION
3
(chain A and resseq 60:86)
X-RAY DIFFRACTION
4
(chain A and resseq 87:107)
X-RAY DIFFRACTION
5
(chain A and resseq 108:143)
X-RAY DIFFRACTION
6
(chain A and resseq 144:172)
X-RAY DIFFRACTION
7
(chain A and resseq 173:203)
author_and_software_defined_assembly
PISA
1
monomeric
A
ASN
61
GLYCOSYLATION SITE
A
ASN
61
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
5
A
N
GLN
5
A
O
ARG
26
A
O
ARG
26
A
N
LEU
23
A
N
LEU
23
A
O
LEU
57
A
O
LEU
57
A
N
VAL
15
A
N
VAL
15
A
O
LEU
88
A
O
LEU
88
A
O
VAL
85
A
O
VAL
85
A
N
ARG
70
A
N
ARG
70
A
O
VAL
73
A
O
VAL
73
A
N
GLN
37
A
N
GLN
37
A
N
TRP
38
A
N
TRP
38
A
O
VAL
48
A
O
VAL
48
A
N
THR
97
A
N
THR
97
A
O
THR
113
A
O
THR
113
A
N
ALA
114
A
N
ALA
114
A
O
VAL
163
A
O
VAL
163
A
O
ARG
168
A
O
ARG
168
A
N
GLN
140
A
N
GLN
140
A
N
THR
97
A
N
THR
97
A
O
THR
113
A
O
THR
113
A
N
ALA
114
A
N
ALA
114
A
O
VAL
163
A
O
VAL
163
A
O
ARG
162
A
O
ARG
162
A
N
GLN
147
A
N
GLN
147
A
O
GLN
134
A
O
GLN
134
A
N
VAL
131
A
N
VAL
131
A
N
SER
126
A
N
SER
126
A
O
THR
185
A
O
THR
185
A
N
LEU
180
A
N
LEU
180
A
O
ILE
199
A
O
ILE
199
1
A
HOH
599
C
HOH
1
A
HOH
602
C
HOH
1
A
HOH
623
C
HOH
1
A
HOH
645
C
HOH
1
A
HOH
646
C
HOH
1
A
N
GLU
157
A
N
GLU
157
1
Y
1
A
CB
GLU
157
A
CB
GLU
157
1
Y
1
A
CG
GLU
157
A
CG
GLU
157
1
Y
1
A
CD
GLU
157
A
CD
GLU
157
1
Y
1
A
OE1
GLU
157
A
OE1
GLU
157
1
Y
1
A
OE2
GLU
157
A
OE2
GLU
157
1
Y
1
A
GLU
152
A
GLU
152
1
Y
1
A
PRO
153
A
PRO
153
1
Y
1
A
GLN
154
A
GLN
154
1
Y
1
A
GLY
155
A
GLY
155
1
Y
1
A
ASP
156
A
ASP
156
1
Y
1
A
HIS
204
A
HIS
204
1
Y
1
A
HIS
205
A
HIS
205
1
Y
1
A
HIS
206
A
HIS
206
1
Y
1
A
HIS
207
A
HIS
207
1
Y
1
A
HIS
208
A
HIS
208
1
Y
1
A
HIS
209
A
HIS
209
1
Y
1
A
A
O
O
HOH
HOH
630
631
1.63
1
A
A
OE2
O
GLU
HOH
7
604
1.83
B
1
A
A
O
O
HOH
HOH
606
619
1.92
1
A
A
O
O
HOH
HOH
549
631
1.98
1
A
A
O
O
HOH
HOH
603
620
1.99
1
A
A
NH1
O
ARG
HOH
54
640
2.01
1
A
A
O
O
HOH
HOH
634
635
2.01
1
A
A
O
O
GLY
HOH
40
644
2.08
A
1
A
A
O
O
HOH
HOH
526
589
2.10
1
A
A
O
O
HOH
HOH
580
608
2.14
1
A
A
O
O
HOH
HOH
627
630
2.16
1
A
A
O
O
HOH
HOH
625
626
2.17
1
A
A
O
O
HOH
HOH
516
579
2.17
1
A
A
O
O
HOH
HOH
419
632
1.39
1_555
3_655
1
A
A
O
O
HOH
HOH
512
628
1.43
1_555
3_655
1
A
A
O
O
HOH
HOH
517
624
1.50
1_555
3_655
1
A
A
O
O
HOH
HOH
402
633
1.55
1_555
3_655
1
A
A
O
O
HOH
HOH
434
627
1.62
1_555
3_655
1
A
A
O
O
HOH
HOH
515
631
1.65
1_555
3_655
1
A
A
O
O
HOH
HOH
552
629
1.68
1_555
3_655
1
A
A
O
O
HOH
HOH
549
630
1.72
1_555
3_655
1
A
A
O
O
HOH
HOH
513
625
1.74
1_555
3_655
1
A
A
O
O
HOH
HOH
605
626
1.75
1_555
3_655
1
A
A
O
O
HOH
HOH
626
632
1.82
1_555
3_655
1
A
A
O
O
HOH
HOH
600
622
1.86
1_555
8_466
1
A
A
O
O
HOH
HOH
598
598
1.94
1_555
3_655
1
A
A
OD2
O
ASP
HOH
51
642
2.17
1_555
4_566
1
A
A
O
O
HOH
HOH
552
630
2.18
1_555
3_655
1
A
LEU
41
A
-119.97
57.60
1
A
SER
44
A
-135.19
-110.93
1
A
SER
44
B
-179.19
22.46
1
A
LEU
45
B
-145.96
-64.19
0.2144
0.1711
0.1770
0.1753
1.700
22.560
2232
22754
22754
9.81
90.65
0.16
Random
1
1.35
MOLECULAR REPLACEMENT
20.95
0.90
1.10
ML
FLAT BULK SOLVENT MODEL
1.700
22.560
247
1727
14
0
1466
0.009
1692
1.341
2335
14.350
648
0.072
277
0.007
315
0.2885
0.2357
1.7371
51
490
36.00
0.3667
0.2568
1.7775
85
787
57.00
0.2384
0.2378
1.8219
111
1134
80.00
0.2641
0.2237
1.8712
164
1300
93.00
0.2150
0.1974
1.9262
118
1353
96.00
0.2048
0.1782
1.9883
163
1393
99.00
0.2273
0.1771
2.0593
148
1382
99.00
0.2018
0.1588
2.1417
153
1382
100.00
0.1872
0.1567
2.2391
172
1379
99.00
0.2029
0.1625
2.3571
142
1428
100.00
0.2344
0.1727
2.5046
162
1389
99.00
0.2253
0.1709
2.6976
160
1416
99.00
0.2269
0.1594
2.9686
151
1410
99.00
0.2207
0.1632
3.3969
144
1413
98.00
0.1944
0.1544
4.2749
143
1425
98.00
0.2037
0.1783
22.5615
165
1441
96.00
1.7
22.560
4HD9
23698
23698
0.000
0.000
1
72.8
data collection
HKL-2000
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.8_1069)
data reduction
HKL-2000
data scaling
HKL-2000
Mucosal addressin cell adhesion molecule 1
Crystal structure of native human MAdCAM-1 D1D2 domain
1
N
N
2
N
N
3
N
N
A
SER
63
A
SER
63
HELX_P
A
ALA
67
A
ALA
67
5
1
5
disulf
2.028
A
CYS
25
A
SG
CYS
25
1_555
A
CYS
72
A
SG
CYS
72
1_555
disulf
2.043
A
CYS
29
A
SG
CYS
29
1_555
A
CYS
76
A
SG
CYS
76
1_555
disulf
2.062
A
CYS
112
A
SG
CYS
112
1_555
A
CYS
182
A
SG
CYS
182
1_555
covale
1.451
one
A
A
N-Glycosylation
A
ASN
61
A
ND2
ASN
61
1_555
A
NAG
2061
B
C1
NAG
1_555
IMMUNE SYSTEM
immunoglobulin superfamily, rolling and firm adhesion, integrin alpha4beta7, IMMUNE SYSTEM
A
GLU
7
A
GLU
7
1
A
PRO
8
A
PRO
8
-4.99
A
GLU
7
A
GLU
7
1
A
PRO
8
A
PRO
8
2.55
A
SER
99
A
SER
99
1
A
PRO
100
A
PRO
100
-4.06
A
THR
118
A
THR
118
1
A
PRO
119
A
PRO
119
-2.11
A
THR
174
A
THR
174
1
A
PRO
175
A
PRO
175
3.46
MADCA_HUMAN
UNP
1
23
Q13477
VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT
FQHTVQLLVYAFPDQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVL
FRVTERWRLPPLGTPVPPALYCQATMRLPGLELSHRQAIPVLH
23
225
4HD9
1
203
Q13477
A
1
1
203
1
ASP
engineered mutation
ASN
94
4HD9
A
Q13477
UNP
116
94
1
expression tag
HIS
204
4HD9
A
Q13477
UNP
204
1
expression tag
HIS
205
4HD9
A
Q13477
UNP
205
1
expression tag
HIS
206
4HD9
A
Q13477
UNP
206
1
expression tag
HIS
207
4HD9
A
Q13477
UNP
207
1
expression tag
HIS
208
4HD9
A
Q13477
UNP
208
1
expression tag
HIS
209
4HD9
A
Q13477
UNP
209
3
5
4
4
4
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
4
A
LEU
4
A
GLU
7
A
GLU
7
A
ARG
21
A
ARG
21
A
LEU
27
A
LEU
27
A
ARG
54
A
ARG
54
A
VAL
59
A
VAL
59
A
VAL
12
A
VAL
12
A
ALA
16
A
ALA
16
A
ARG
79
A
ARG
79
A
TYR
90
A
TYR
90
A
GLY
68
A
GLY
68
A
CYS
76
A
CYS
76
A
SER
35
A
SER
35
A
ARG
39
A
ARG
39
A
VAL
48
A
VAL
48
A
ASP
51
A
ASP
51
A
GLN
95
A
GLN
95
A
SER
99
A
SER
99
A
GLU
109
A
GLU
109
A
VAL
117
A
VAL
117
A
PHE
161
A
PHE
161
A
ARG
168
A
ARG
168
A
GLN
140
A
GLN
140
A
ALA
141
A
ALA
141
A
GLN
95
A
GLN
95
A
SER
99
A
SER
99
A
GLU
109
A
GLU
109
A
VAL
117
A
VAL
117
A
PHE
161
A
PHE
161
A
ARG
168
A
ARG
168
A
GLU
145
A
GLU
145
A
GLU
148
A
GLU
148
A
GLN
134
A
GLN
134
A
GLU
135
A
GLU
135
A
LEU
125
A
LEU
125
A
VAL
131
A
VAL
131
A
ALA
179
A
ALA
179
A
LEU
188
A
LEU
188
A
LEU
191
A
LEU
191
A
PRO
200
A
PRO
200
20
C 2 2 21