0.012822
0.007403
0.000000
0.000000
0.014805
0.000000
0.000000
0.000000
0.015455
0.000000
0.000000
0.000000
Duong-Ly, K.C.
Amzel, L.M.
Gabelli, S.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
77.992
77.992
64.704
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C6 H14 O4
150.173
TRIETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
N
N
99
S
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
N
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
N
N
119
S
C
N
120
N
C
N
121
N
O
N
122
N
C
N
123
N
C
N
124
N
C
N
125
N
O
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
O
N
151
N
C
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
Y
166
N
C
Y
167
N
N
Y
168
N
C
Y
169
N
C
Y
170
N
N
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
S
C
N
190
N
C
N
191
N
C
N
192
N
C
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
N
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
S
N
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
C
N
292
N
O
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
C
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
S
N
370
N
O
N
371
N
O
N
372
N
O
N
373
N
O
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
R
C
N
379
N
O
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
N
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
C
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
N
N
423
N
O
N
424
N
O
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
N
449
N
O
N
450
N
O
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
N
N
463
S
C
N
464
N
C
N
465
N
O
N
466
N
C
N
467
N
C
N
468
N
C
N
469
N
O
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
Y
162
N
sing
Y
163
N
doub
Y
164
N
doub
N
165
N
sing
Y
166
N
sing
N
167
N
sing
Y
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
Y
309
N
doub
Y
310
N
sing
Y
311
N
sing
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
doub
N
394
N
sing
Y
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
Y
429
N
doub
Y
430
N
sing
Y
431
N
sing
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
doub
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
US
Plos One
1932-6203
8
e64241
e64241
10.1371/journal.pone.0064241
23691178
A UDP-X diphosphatase from Streptococcus pneumoniae hydrolyzes precursors of peptidoglycan biosynthesis.
2013
10.2210/pdb4hfq/pdb
pdb_00004hfq
100
1
CCD
2008-07-12
RAYONIX MX-225
Kohzu HLD-4 Double Crystal
SAD
x-ray
1
0.97929
1.0
27.56
182809
0.122
1.07
1.950
50.000
31951
100.00
5.70
31-ID
APS
0.97929
SYNCHROTRON
APS BEAMLINE 31-ID
23493.455
MutT/nudix family protein
2
man
polymer
62.068
1,2-ETHANEDIOL
11
syn
non-polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3
syn
non-polymer
96.063
SULFATE ION
5
syn
non-polymer
106.120
DI(HYDROXYETHYL)ETHER
4
syn
non-polymer
92.094
GLYCEROL
6
syn
non-polymer
150.173
TRIETHYLENE GLYCOL
1
syn
non-polymer
18.015
water
509
nat
water
no
no
MKTSDFVKYLQRMIAITDTGLTFTKDPFDRERYEDLRSLLSEMLNQASDLDSEEVAEVLKPTSAYATPLMDVRAWIVEDE
KICLVRGQGEDSWALPGGFGEVGYSPTENILKEIEEETGFKAKVERLLAVFDTNRFQLQSKQYTKFVFGCKLLDGQFQEN
QEIADLQFFAIDQLPNLSEKRITKEQIELLWQVYQGHRGQYLD
MKTSDFVKYLQRMIAITDTGLTFTKDPFDRERYEDLRSLLSEMLNQASDLDSEEVAEVLKPTSAYATPLMDVRAWIVEDE
KICLVRGQGEDSWALPGGFGEVGYSPTENILKEIEEETGFKAKVERLLAVFDTNRFQLQSKQYTKFVFGCKLLDGQFQEN
QEIADLQFFAIDQLPNLSEKRITKEQIELLWQVYQGHRGQYLD
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
TIGR4
sample
SP1669, SP_1669
170187
Streptococcus pneumoniae
562
Escherichia coli
BL21(DE3)
plasmid
pET-24a
1
2.42
49.13
VAPOR DIFFUSION, HANGING DROP
5.5
Bis-Tris, Li2SO4, PEG-3350, pH 5.5, vapor diffusion, hanging drop, temperature 298K
298
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
1
0
2013-08-07
1
1
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-10-05
REL
REL
0.071
2.216
100.00
5.80
0.068
1.353
100.00
5.80
0.095
1.021
100.00
5.80
0.136
0.963
100.00
5.80
0.184
0.934
100.00
5.80
0.224
0.865
100.00
5.80
0.295
0.943
100.00
5.80
0.338
0.803
100.00
5.70
0.415
0.812
100.00
5.60
0.554
0.768
100.00
5.20
EDO
1,2-ETHANEDIOL
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
SO4
SULFATE ION
PEG
DI(HYDROXYETHYL)ETHER
GOL
GLYCEROL
PGE
TRIETHYLENE GLYCOL
HOH
water
EDO
303
2
EDO
EDO
301
A
EDO
307
2
EDO
EDO
302
A
TRS
311
3
TRS
TRS
303
A
SO4
312
4
SO4
SO4
304
A
SO4
313
4
SO4
SO4
305
A
SO4
314
4
SO4
SO4
306
A
PEG
317
5
PEG
PEG
307
A
EDO
318
2
EDO
EDO
308
A
GOL
319
6
GOL
GOL
309
A
PEG
320
5
PEG
PEG
310
A
SO4
322
4
SO4
SO4
311
A
EDO
323
2
EDO
EDO
312
A
PIG
324
7
PGE
PGE
313
A
GOL
327
6
GOL
GOL
314
A
GOL
328
6
GOL
GOL
315
A
PEG
329
5
PEG
PEG
316
A
EDO
330
2
EDO
EDO
317
A
SO4
301
4
SO4
SO4
301
B
EDO
302
2
EDO
EDO
302
B
GOL
304
6
GOL
GOL
303
B
GOL
305
6
GOL
GOL
304
B
TRS
306
3
TRS
TRS
305
B
EDO
308
2
EDO
EDO
306
B
TRS
309
3
TRS
TRS
307
B
GOL
310
6
GOL
GOL
308
B
EDO
315
2
EDO
EDO
309
B
EDO
316
2
EDO
EDO
310
B
EDO
325
2
EDO
EDO
311
B
EDO
326
2
EDO
EDO
312
B
PEG
331
5
PEG
PEG
313
B
HOH
1
8
HOH
HOH
401
A
HOH
6
8
HOH
HOH
402
A
HOH
10
8
HOH
HOH
403
A
HOH
16
8
HOH
HOH
404
A
HOH
18
8
HOH
HOH
405
A
HOH
19
8
HOH
HOH
406
A
HOH
20
8
HOH
HOH
407
A
HOH
22
8
HOH
HOH
408
A
HOH
23
8
HOH
HOH
409
A
HOH
24
8
HOH
HOH
410
A
HOH
25
8
HOH
HOH
411
A
HOH
27
8
HOH
HOH
412
A
HOH
28
8
HOH
HOH
413
A
HOH
30
8
HOH
HOH
414
A
HOH
31
8
HOH
HOH
415
A
HOH
32
8
HOH
HOH
416
A
HOH
34
8
HOH
HOH
417
A
HOH
40
8
HOH
HOH
418
A
HOH
46
8
HOH
HOH
419
A
HOH
47
8
HOH
HOH
420
A
HOH
48
8
HOH
HOH
421
A
HOH
49
8
HOH
HOH
422
A
HOH
50
8
HOH
HOH
423
A
HOH
55
8
HOH
HOH
424
A
HOH
58
8
HOH
HOH
425
A
HOH
59
8
HOH
HOH
426
A
HOH
60
8
HOH
HOH
427
A
HOH
61
8
HOH
HOH
428
A
HOH
62
8
HOH
HOH
429
A
HOH
64
8
HOH
HOH
430
A
HOH
66
8
HOH
HOH
431
A
HOH
68
8
HOH
HOH
432
A
HOH
72
8
HOH
HOH
433
A
HOH
73
8
HOH
HOH
434
A
HOH
77
8
HOH
HOH
435
A
HOH
78
8
HOH
HOH
436
A
HOH
83
8
HOH
HOH
437
A
HOH
86
8
HOH
HOH
438
A
HOH
87
8
HOH
HOH
439
A
HOH
88
8
HOH
HOH
440
A
HOH
89
8
HOH
HOH
441
A
HOH
90
8
HOH
HOH
442
A
HOH
94
8
HOH
HOH
443
A
HOH
96
8
HOH
HOH
444
A
HOH
99
8
HOH
HOH
445
A
HOH
105
8
HOH
HOH
446
A
HOH
106
8
HOH
HOH
447
A
HOH
107
8
HOH
HOH
448
A
HOH
108
8
HOH
HOH
449
A
HOH
109
8
HOH
HOH
450
A
HOH
114
8
HOH
HOH
451
A
HOH
116
8
HOH
HOH
452
A
HOH
118
8
HOH
HOH
453
A
HOH
119
8
HOH
HOH
454
A
HOH
120
8
HOH
HOH
455
A
HOH
121
8
HOH
HOH
456
A
HOH
122
8
HOH
HOH
457
A
HOH
123
8
HOH
HOH
458
A
HOH
124
8
HOH
HOH
459
A
HOH
127
8
HOH
HOH
460
A
HOH
130
8
HOH
HOH
461
A
HOH
132
8
HOH
HOH
462
A
HOH
134
8
HOH
HOH
463
A
HOH
140
8
HOH
HOH
464
A
HOH
144
8
HOH
HOH
465
A
HOH
147
8
HOH
HOH
466
A
HOH
148
8
HOH
HOH
467
A
HOH
151
8
HOH
HOH
468
A
HOH
156
8
HOH
HOH
469
A
HOH
157
8
HOH
HOH
470
A
HOH
160
8
HOH
HOH
471
A
HOH
161
8
HOH
HOH
472
A
HOH
162
8
HOH
HOH
473
A
HOH
164
8
HOH
HOH
474
A
HOH
166
8
HOH
HOH
475
A
HOH
169
8
HOH
HOH
476
A
HOH
172
8
HOH
HOH
477
A
HOH
175
8
HOH
HOH
478
A
HOH
177
8
HOH
HOH
479
A
HOH
179
8
HOH
HOH
480
A
HOH
180
8
HOH
HOH
481
A
HOH
181
8
HOH
HOH
482
A
HOH
183
8
HOH
HOH
483
A
HOH
187
8
HOH
HOH
484
A
HOH
188
8
HOH
HOH
485
A
HOH
190
8
HOH
HOH
486
A
HOH
191
8
HOH
HOH
487
A
HOH
192
8
HOH
HOH
488
A
HOH
193
8
HOH
HOH
489
A
HOH
194
8
HOH
HOH
490
A
HOH
195
8
HOH
HOH
491
A
HOH
196
8
HOH
HOH
492
A
HOH
197
8
HOH
HOH
493
A
HOH
201
8
HOH
HOH
494
A
HOH
207
8
HOH
HOH
495
A
HOH
209
8
HOH
HOH
496
A
HOH
223
8
HOH
HOH
497
A
HOH
233
8
HOH
HOH
498
A
HOH
234
8
HOH
HOH
499
A
HOH
235
8
HOH
HOH
500
A
HOH
236
8
HOH
HOH
501
A
HOH
244
8
HOH
HOH
502
A
HOH
249
8
HOH
HOH
503
A
HOH
251
8
HOH
HOH
504
A
HOH
252
8
HOH
HOH
505
A
HOH
253
8
HOH
HOH
506
A
HOH
256
8
HOH
HOH
507
A
HOH
284
8
HOH
HOH
508
A
HOH
285
8
HOH
HOH
509
A
HOH
286
8
HOH
HOH
510
A
HOH
288
8
HOH
HOH
511
A
HOH
290
8
HOH
HOH
512
A
HOH
291
8
HOH
HOH
513
A
HOH
292
8
HOH
HOH
514
A
HOH
293
8
HOH
HOH
515
A
HOH
294
8
HOH
HOH
516
A
HOH
295
8
HOH
HOH
517
A
HOH
296
8
HOH
HOH
518
A
HOH
297
8
HOH
HOH
519
A
HOH
298
8
HOH
HOH
520
A
HOH
299
8
HOH
HOH
521
A
HOH
300
8
HOH
HOH
522
A
HOH
301
8
HOH
HOH
523
A
HOH
302
8
HOH
HOH
524
A
HOH
303
8
HOH
HOH
525
A
HOH
304
8
HOH
HOH
526
A
HOH
305
8
HOH
HOH
527
A
HOH
306
8
HOH
HOH
528
A
HOH
307
8
HOH
HOH
529
A
HOH
308
8
HOH
HOH
530
A
HOH
309
8
HOH
HOH
531
A
HOH
310
8
HOH
HOH
532
A
HOH
311
8
HOH
HOH
533
A
HOH
312
8
HOH
HOH
534
A
HOH
313
8
HOH
HOH
535
A
HOH
314
8
HOH
HOH
536
A
HOH
315
8
HOH
HOH
537
A
HOH
316
8
HOH
HOH
538
A
HOH
317
8
HOH
HOH
539
A
HOH
318
8
HOH
HOH
540
A
HOH
319
8
HOH
HOH
541
A
HOH
320
8
HOH
HOH
542
A
HOH
321
8
HOH
HOH
543
A
HOH
322
8
HOH
HOH
544
A
HOH
323
8
HOH
HOH
545
A
HOH
324
8
HOH
HOH
546
A
HOH
325
8
HOH
HOH
547
A
HOH
326
8
HOH
HOH
548
A
HOH
327
8
HOH
HOH
549
A
HOH
328
8
HOH
HOH
550
A
HOH
329
8
HOH
HOH
551
A
HOH
331
8
HOH
HOH
552
A
HOH
332
8
HOH
HOH
553
A
HOH
333
8
HOH
HOH
554
A
HOH
335
8
HOH
HOH
555
A
HOH
336
8
HOH
HOH
556
A
HOH
337
8
HOH
HOH
557
A
HOH
338
8
HOH
HOH
558
A
HOH
339
8
HOH
HOH
559
A
HOH
340
8
HOH
HOH
560
A
HOH
341
8
HOH
HOH
561
A
HOH
342
8
HOH
HOH
562
A
HOH
343
8
HOH
HOH
563
A
HOH
344
8
HOH
HOH
564
A
HOH
345
8
HOH
HOH
565
A
HOH
346
8
HOH
HOH
566
A
HOH
347
8
HOH
HOH
567
A
HOH
348
8
HOH
HOH
568
A
HOH
349
8
HOH
HOH
569
A
HOH
350
8
HOH
HOH
570
A
HOH
351
8
HOH
HOH
571
A
HOH
352
8
HOH
HOH
572
A
HOH
353
8
HOH
HOH
573
A
HOH
355
8
HOH
HOH
574
A
HOH
356
8
HOH
HOH
575
A
HOH
369
8
HOH
HOH
576
A
HOH
370
8
HOH
HOH
577
A
HOH
371
8
HOH
HOH
578
A
HOH
373
8
HOH
HOH
579
A
HOH
406
8
HOH
HOH
580
A
HOH
407
8
HOH
HOH
581
A
HOH
408
8
HOH
HOH
582
A
HOH
409
8
HOH
HOH
583
A
HOH
410
8
HOH
HOH
584
A
HOH
412
8
HOH
HOH
585
A
HOH
413
8
HOH
HOH
586
A
HOH
414
8
HOH
HOH
587
A
HOH
415
8
HOH
HOH
588
A
HOH
416
8
HOH
HOH
589
A
HOH
417
8
HOH
HOH
590
A
HOH
418
8
HOH
HOH
591
A
HOH
420
8
HOH
HOH
592
A
HOH
422
8
HOH
HOH
593
A
HOH
423
8
HOH
HOH
594
A
HOH
424
8
HOH
HOH
595
A
HOH
425
8
HOH
HOH
596
A
HOH
426
8
HOH
HOH
597
A
HOH
427
8
HOH
HOH
598
A
HOH
428
8
HOH
HOH
599
A
HOH
429
8
HOH
HOH
600
A
HOH
434
8
HOH
HOH
601
A
HOH
440
8
HOH
HOH
602
A
HOH
442
8
HOH
HOH
603
A
HOH
443
8
HOH
HOH
604
A
HOH
452
8
HOH
HOH
605
A
HOH
460
8
HOH
HOH
606
A
HOH
469
8
HOH
HOH
607
A
HOH
470
8
HOH
HOH
608
A
HOH
471
8
HOH
HOH
609
A
HOH
473
8
HOH
HOH
610
A
HOH
474
8
HOH
HOH
611
A
HOH
475
8
HOH
HOH
612
A
HOH
476
8
HOH
HOH
613
A
HOH
477
8
HOH
HOH
614
A
HOH
478
8
HOH
HOH
615
A
HOH
479
8
HOH
HOH
616
A
HOH
480
8
HOH
HOH
617
A
HOH
481
8
HOH
HOH
618
A
HOH
486
8
HOH
HOH
619
A
HOH
487
8
HOH
HOH
620
A
HOH
488
8
HOH
HOH
621
A
HOH
489
8
HOH
HOH
622
A
HOH
490
8
HOH
HOH
623
A
HOH
491
8
HOH
HOH
624
A
HOH
492
8
HOH
HOH
625
A
HOH
493
8
HOH
HOH
626
A
HOH
494
8
HOH
HOH
627
A
HOH
495
8
HOH
HOH
628
A
HOH
496
8
HOH
HOH
629
A
HOH
497
8
HOH
HOH
630
A
HOH
503
8
HOH
HOH
631
A
HOH
506
8
HOH
HOH
632
A
HOH
508
8
HOH
HOH
633
A
HOH
524
8
HOH
HOH
634
A
HOH
525
8
HOH
HOH
635
A
HOH
526
8
HOH
HOH
636
A
HOH
527
8
HOH
HOH
637
A
HOH
528
8
HOH
HOH
638
A
HOH
529
8
HOH
HOH
639
A
HOH
2
8
HOH
HOH
401
B
HOH
3
8
HOH
HOH
402
B
HOH
4
8
HOH
HOH
403
B
HOH
5
8
HOH
HOH
404
B
HOH
7
8
HOH
HOH
405
B
HOH
8
8
HOH
HOH
406
B
HOH
9
8
HOH
HOH
407
B
HOH
11
8
HOH
HOH
408
B
HOH
12
8
HOH
HOH
409
B
HOH
13
8
HOH
HOH
410
B
HOH
14
8
HOH
HOH
411
B
HOH
15
8
HOH
HOH
412
B
HOH
17
8
HOH
HOH
413
B
HOH
21
8
HOH
HOH
414
B
HOH
26
8
HOH
HOH
415
B
HOH
29
8
HOH
HOH
416
B
HOH
33
8
HOH
HOH
417
B
HOH
35
8
HOH
HOH
418
B
HOH
36
8
HOH
HOH
419
B
HOH
37
8
HOH
HOH
420
B
HOH
38
8
HOH
HOH
421
B
HOH
39
8
HOH
HOH
422
B
HOH
41
8
HOH
HOH
423
B
HOH
42
8
HOH
HOH
424
B
HOH
43
8
HOH
HOH
425
B
HOH
44
8
HOH
HOH
426
B
HOH
45
8
HOH
HOH
427
B
HOH
51
8
HOH
HOH
428
B
HOH
53
8
HOH
HOH
429
B
HOH
54
8
HOH
HOH
430
B
HOH
56
8
HOH
HOH
431
B
HOH
57
8
HOH
HOH
432
B
HOH
63
8
HOH
HOH
433
B
HOH
65
8
HOH
HOH
434
B
HOH
67
8
HOH
HOH
435
B
HOH
69
8
HOH
HOH
436
B
HOH
70
8
HOH
HOH
437
B
HOH
71
8
HOH
HOH
438
B
HOH
74
8
HOH
HOH
439
B
HOH
75
8
HOH
HOH
440
B
HOH
76
8
HOH
HOH
441
B
HOH
79
8
HOH
HOH
442
B
HOH
80
8
HOH
HOH
443
B
HOH
81
8
HOH
HOH
444
B
HOH
82
8
HOH
HOH
445
B
HOH
84
8
HOH
HOH
446
B
HOH
85
8
HOH
HOH
447
B
HOH
91
8
HOH
HOH
448
B
HOH
92
8
HOH
HOH
449
B
HOH
93
8
HOH
HOH
450
B
HOH
95
8
HOH
HOH
451
B
HOH
97
8
HOH
HOH
452
B
HOH
98
8
HOH
HOH
453
B
HOH
100
8
HOH
HOH
454
B
HOH
101
8
HOH
HOH
455
B
HOH
102
8
HOH
HOH
456
B
HOH
103
8
HOH
HOH
457
B
HOH
104
8
HOH
HOH
458
B
HOH
110
8
HOH
HOH
459
B
HOH
111
8
HOH
HOH
460
B
HOH
112
8
HOH
HOH
461
B
HOH
113
8
HOH
HOH
462
B
HOH
115
8
HOH
HOH
463
B
HOH
117
8
HOH
HOH
464
B
HOH
125
8
HOH
HOH
465
B
HOH
126
8
HOH
HOH
466
B
HOH
128
8
HOH
HOH
467
B
HOH
129
8
HOH
HOH
468
B
HOH
131
8
HOH
HOH
469
B
HOH
133
8
HOH
HOH
470
B
HOH
135
8
HOH
HOH
471
B
HOH
136
8
HOH
HOH
472
B
HOH
137
8
HOH
HOH
473
B
HOH
138
8
HOH
HOH
474
B
HOH
139
8
HOH
HOH
475
B
HOH
141
8
HOH
HOH
476
B
HOH
142
8
HOH
HOH
477
B
HOH
143
8
HOH
HOH
478
B
HOH
145
8
HOH
HOH
479
B
HOH
146
8
HOH
HOH
480
B
HOH
149
8
HOH
HOH
481
B
HOH
150
8
HOH
HOH
482
B
HOH
152
8
HOH
HOH
483
B
HOH
153
8
HOH
HOH
484
B
HOH
154
8
HOH
HOH
485
B
HOH
155
8
HOH
HOH
486
B
HOH
158
8
HOH
HOH
487
B
HOH
159
8
HOH
HOH
488
B
HOH
163
8
HOH
HOH
489
B
HOH
165
8
HOH
HOH
490
B
HOH
167
8
HOH
HOH
491
B
HOH
168
8
HOH
HOH
492
B
HOH
170
8
HOH
HOH
493
B
HOH
171
8
HOH
HOH
494
B
HOH
173
8
HOH
HOH
495
B
HOH
174
8
HOH
HOH
496
B
HOH
176
8
HOH
HOH
497
B
HOH
178
8
HOH
HOH
498
B
HOH
182
8
HOH
HOH
499
B
HOH
184
8
HOH
HOH
500
B
HOH
185
8
HOH
HOH
501
B
HOH
186
8
HOH
HOH
502
B
HOH
189
8
HOH
HOH
503
B
HOH
198
8
HOH
HOH
504
B
HOH
202
8
HOH
HOH
505
B
HOH
203
8
HOH
HOH
506
B
HOH
204
8
HOH
HOH
507
B
HOH
205
8
HOH
HOH
508
B
HOH
206
8
HOH
HOH
509
B
HOH
208
8
HOH
HOH
510
B
HOH
210
8
HOH
HOH
511
B
HOH
212
8
HOH
HOH
512
B
HOH
213
8
HOH
HOH
513
B
HOH
214
8
HOH
HOH
514
B
HOH
215
8
HOH
HOH
515
B
HOH
216
8
HOH
HOH
516
B
HOH
217
8
HOH
HOH
517
B
HOH
218
8
HOH
HOH
518
B
HOH
219
8
HOH
HOH
519
B
HOH
220
8
HOH
HOH
520
B
HOH
221
8
HOH
HOH
521
B
HOH
222
8
HOH
HOH
522
B
HOH
225
8
HOH
HOH
523
B
HOH
226
8
HOH
HOH
524
B
HOH
227
8
HOH
HOH
525
B
HOH
228
8
HOH
HOH
526
B
HOH
229
8
HOH
HOH
527
B
HOH
230
8
HOH
HOH
528
B
HOH
231
8
HOH
HOH
529
B
HOH
232
8
HOH
HOH
530
B
HOH
237
8
HOH
HOH
531
B
HOH
238
8
HOH
HOH
532
B
HOH
239
8
HOH
HOH
533
B
HOH
240
8
HOH
HOH
534
B
HOH
241
8
HOH
HOH
535
B
HOH
242
8
HOH
HOH
536
B
HOH
243
8
HOH
HOH
537
B
HOH
245
8
HOH
HOH
538
B
HOH
246
8
HOH
HOH
539
B
HOH
247
8
HOH
HOH
540
B
HOH
248
8
HOH
HOH
541
B
HOH
250
8
HOH
HOH
542
B
HOH
254
8
HOH
HOH
543
B
HOH
258
8
HOH
HOH
544
B
HOH
259
8
HOH
HOH
545
B
HOH
260
8
HOH
HOH
546
B
HOH
261
8
HOH
HOH
547
B
HOH
262
8
HOH
HOH
548
B
HOH
263
8
HOH
HOH
549
B
HOH
264
8
HOH
HOH
550
B
HOH
265
8
HOH
HOH
551
B
HOH
266
8
HOH
HOH
552
B
HOH
267
8
HOH
HOH
553
B
HOH
268
8
HOH
HOH
554
B
HOH
269
8
HOH
HOH
555
B
HOH
270
8
HOH
HOH
556
B
HOH
271
8
HOH
HOH
557
B
HOH
272
8
HOH
HOH
558
B
HOH
273
8
HOH
HOH
559
B
HOH
274
8
HOH
HOH
560
B
HOH
275
8
HOH
HOH
561
B
HOH
276
8
HOH
HOH
562
B
HOH
277
8
HOH
HOH
563
B
HOH
278
8
HOH
HOH
564
B
HOH
280
8
HOH
HOH
565
B
HOH
281
8
HOH
HOH
566
B
HOH
282
8
HOH
HOH
567
B
HOH
283
8
HOH
HOH
568
B
HOH
287
8
HOH
HOH
569
B
HOH
289
8
HOH
HOH
570
B
HOH
330
8
HOH
HOH
571
B
HOH
334
8
HOH
HOH
572
B
HOH
354
8
HOH
HOH
573
B
HOH
357
8
HOH
HOH
574
B
HOH
358
8
HOH
HOH
575
B
HOH
359
8
HOH
HOH
576
B
HOH
360
8
HOH
HOH
577
B
HOH
361
8
HOH
HOH
578
B
HOH
362
8
HOH
HOH
579
B
HOH
363
8
HOH
HOH
580
B
HOH
364
8
HOH
HOH
581
B
HOH
365
8
HOH
HOH
582
B
HOH
366
8
HOH
HOH
583
B
HOH
367
8
HOH
HOH
584
B
HOH
368
8
HOH
HOH
585
B
HOH
372
8
HOH
HOH
586
B
HOH
374
8
HOH
HOH
587
B
HOH
375
8
HOH
HOH
588
B
HOH
376
8
HOH
HOH
589
B
HOH
377
8
HOH
HOH
590
B
HOH
378
8
HOH
HOH
591
B
HOH
379
8
HOH
HOH
592
B
HOH
380
8
HOH
HOH
593
B
HOH
381
8
HOH
HOH
594
B
HOH
382
8
HOH
HOH
595
B
HOH
383
8
HOH
HOH
596
B
HOH
384
8
HOH
HOH
597
B
HOH
385
8
HOH
HOH
598
B
HOH
386
8
HOH
HOH
599
B
HOH
387
8
HOH
HOH
600
B
HOH
388
8
HOH
HOH
601
B
HOH
389
8
HOH
HOH
602
B
HOH
390
8
HOH
HOH
603
B
HOH
391
8
HOH
HOH
604
B
HOH
392
8
HOH
HOH
605
B
HOH
393
8
HOH
HOH
606
B
HOH
394
8
HOH
HOH
607
B
HOH
395
8
HOH
HOH
608
B
HOH
396
8
HOH
HOH
609
B
HOH
397
8
HOH
HOH
610
B
HOH
398
8
HOH
HOH
611
B
HOH
399
8
HOH
HOH
612
B
HOH
401
8
HOH
HOH
613
B
HOH
402
8
HOH
HOH
614
B
HOH
403
8
HOH
HOH
615
B
HOH
404
8
HOH
HOH
616
B
HOH
405
8
HOH
HOH
617
B
HOH
411
8
HOH
HOH
618
B
HOH
421
8
HOH
HOH
619
B
HOH
430
8
HOH
HOH
620
B
HOH
431
8
HOH
HOH
621
B
HOH
432
8
HOH
HOH
622
B
HOH
433
8
HOH
HOH
623
B
HOH
435
8
HOH
HOH
624
B
HOH
436
8
HOH
HOH
625
B
HOH
437
8
HOH
HOH
626
B
HOH
438
8
HOH
HOH
627
B
HOH
439
8
HOH
HOH
628
B
HOH
441
8
HOH
HOH
629
B
HOH
444
8
HOH
HOH
630
B
HOH
445
8
HOH
HOH
631
B
HOH
446
8
HOH
HOH
632
B
HOH
447
8
HOH
HOH
633
B
HOH
448
8
HOH
HOH
634
B
HOH
449
8
HOH
HOH
635
B
HOH
451
8
HOH
HOH
636
B
HOH
453
8
HOH
HOH
637
B
HOH
455
8
HOH
HOH
638
B
HOH
456
8
HOH
HOH
639
B
HOH
457
8
HOH
HOH
640
B
HOH
458
8
HOH
HOH
641
B
HOH
459
8
HOH
HOH
642
B
HOH
462
8
HOH
HOH
643
B
HOH
464
8
HOH
HOH
644
B
HOH
465
8
HOH
HOH
645
B
HOH
466
8
HOH
HOH
646
B
HOH
467
8
HOH
HOH
647
B
HOH
468
8
HOH
HOH
648
B
HOH
472
8
HOH
HOH
649
B
HOH
482
8
HOH
HOH
650
B
HOH
483
8
HOH
HOH
651
B
HOH
484
8
HOH
HOH
652
B
HOH
485
8
HOH
HOH
653
B
HOH
499
8
HOH
HOH
654
B
HOH
500
8
HOH
HOH
655
B
HOH
501
8
HOH
HOH
656
B
HOH
502
8
HOH
HOH
657
B
HOH
505
8
HOH
HOH
658
B
HOH
507
8
HOH
HOH
659
B
HOH
509
8
HOH
HOH
660
B
HOH
510
8
HOH
HOH
661
B
HOH
512
8
HOH
HOH
662
B
HOH
513
8
HOH
HOH
663
B
HOH
514
8
HOH
HOH
664
B
HOH
515
8
HOH
HOH
665
B
HOH
516
8
HOH
HOH
666
B
HOH
518
8
HOH
HOH
667
B
HOH
519
8
HOH
HOH
668
B
HOH
520
8
HOH
HOH
669
B
HOH
522
8
HOH
HOH
670
B
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
THR
3
n
3
THR
3
A
SER
4
n
4
SER
4
A
ASP
5
n
5
ASP
5
A
PHE
6
n
6
PHE
6
A
VAL
7
n
7
VAL
7
A
LYS
8
n
8
LYS
8
A
TYR
9
n
9
TYR
9
A
LEU
10
n
10
LEU
10
A
GLN
11
n
11
GLN
11
A
ARG
12
n
12
ARG
12
A
MET
13
n
13
MET
13
A
ILE
14
n
14
ILE
14
A
ALA
15
n
15
ALA
15
A
ILE
16
n
16
ILE
16
A
THR
17
n
17
THR
17
A
ASP
18
n
18
ASP
18
A
THR
19
n
19
THR
19
A
GLY
20
n
20
GLY
20
A
LEU
21
n
21
LEU
21
A
THR
22
n
22
THR
22
A
PHE
23
n
23
PHE
23
A
THR
24
n
24
THR
24
A
LYS
25
n
25
LYS
25
A
ASP
26
n
26
ASP
26
A
PRO
27
n
27
PRO
27
A
PHE
28
n
28
PHE
28
A
ASP
29
n
29
ASP
29
A
ARG
30
n
30
ARG
30
A
GLU
31
n
31
GLU
31
A
ARG
32
n
32
ARG
32
A
TYR
33
n
33
TYR
33
A
GLU
34
n
34
GLU
34
A
ASP
35
n
35
ASP
35
A
LEU
36
n
36
LEU
36
A
ARG
37
n
37
ARG
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
LEU
40
n
40
LEU
40
A
SER
41
n
41
SER
41
A
GLU
42
n
42
GLU
42
A
MET
43
n
43
MET
43
A
LEU
44
n
44
LEU
44
A
ASN
45
n
45
ASN
45
A
GLN
46
n
46
GLN
46
A
ALA
47
n
47
ALA
47
A
SER
48
n
48
SER
48
A
ASP
49
n
49
ASP
49
A
LEU
50
n
50
LEU
50
A
ASP
51
n
51
ASP
51
A
SER
52
n
52
SER
52
A
GLU
53
n
53
GLU
53
A
GLU
54
n
54
GLU
54
A
VAL
55
n
55
VAL
55
A
ALA
56
n
56
ALA
56
A
GLU
57
n
57
GLU
57
A
VAL
58
n
58
VAL
58
A
LEU
59
n
59
LEU
59
A
LYS
60
n
60
LYS
60
A
PRO
61
n
61
PRO
61
A
THR
62
n
62
THR
62
A
SER
63
n
63
SER
63
A
ALA
64
n
64
ALA
64
A
TYR
65
n
65
TYR
65
A
ALA
66
n
66
ALA
66
A
THR
67
n
67
THR
67
A
PRO
68
n
68
PRO
68
A
LEU
69
n
69
LEU
69
A
MET
70
n
70
MET
70
A
ASP
71
n
71
ASP
71
A
VAL
72
n
72
VAL
72
A
ARG
73
n
73
ARG
73
A
ALA
74
n
74
ALA
74
A
TRP
75
n
75
TRP
75
A
ILE
76
n
76
ILE
76
A
VAL
77
n
77
VAL
77
A
GLU
78
n
78
GLU
78
A
ASP
79
n
79
ASP
79
A
GLU
80
n
80
GLU
80
A
LYS
81
n
81
LYS
81
A
ILE
82
n
82
ILE
82
A
CYS
83
n
83
CYS
83
A
LEU
84
n
84
LEU
84
A
VAL
85
n
85
VAL
85
A
ARG
86
n
86
ARG
86
A
GLY
87
n
87
GLY
87
A
GLN
88
n
88
GLN
88
A
GLY
89
n
89
GLY
89
A
GLU
90
n
90
GLU
90
A
ASP
91
n
91
ASP
91
A
SER
92
n
92
SER
92
A
TRP
93
n
93
TRP
93
A
ALA
94
n
94
ALA
94
A
LEU
95
n
95
LEU
95
A
PRO
96
n
96
PRO
96
A
GLY
97
n
97
GLY
97
A
GLY
98
n
98
GLY
98
A
PHE
99
n
99
PHE
99
A
GLY
100
n
100
GLY
100
A
GLU
101
n
101
GLU
101
A
VAL
102
n
102
VAL
102
A
GLY
103
n
103
GLY
103
A
TYR
104
n
104
TYR
104
A
SER
105
n
105
SER
105
A
PRO
106
n
106
PRO
106
A
THR
107
n
107
THR
107
A
GLU
108
n
108
GLU
108
A
ASN
109
n
109
ASN
109
A
ILE
110
n
110
ILE
110
A
LEU
111
n
111
LEU
111
A
LYS
112
n
112
LYS
112
A
GLU
113
n
113
GLU
113
A
ILE
114
n
114
ILE
114
A
GLU
115
n
115
GLU
115
A
GLU
116
n
116
GLU
116
A
GLU
117
n
117
GLU
117
A
THR
118
n
118
THR
118
A
GLY
119
n
119
GLY
119
A
PHE
120
n
120
PHE
120
A
LYS
121
n
121
LYS
121
A
ALA
122
n
122
ALA
122
A
LYS
123
n
123
LYS
123
A
VAL
124
n
124
VAL
124
A
GLU
125
n
125
GLU
125
A
ARG
126
n
126
ARG
126
A
LEU
127
n
127
LEU
127
A
LEU
128
n
128
LEU
128
A
ALA
129
n
129
ALA
129
A
VAL
130
n
130
VAL
130
A
PHE
131
n
131
PHE
131
A
ASP
132
n
132
ASP
132
A
THR
133
n
133
THR
133
A
ASN
134
n
134
ASN
134
A
ARG
135
n
135
ARG
135
A
PHE
136
n
136
PHE
136
A
GLN
137
n
137
GLN
137
A
LEU
138
n
138
LEU
138
A
GLN
139
n
139
GLN
139
A
SER
140
n
140
SER
140
A
LYS
141
n
141
LYS
141
A
GLN
142
n
142
GLN
142
A
TYR
143
n
143
TYR
143
A
THR
144
n
144
THR
144
A
LYS
145
n
145
LYS
145
A
PHE
146
n
146
PHE
146
A
VAL
147
n
147
VAL
147
A
PHE
148
n
148
PHE
148
A
GLY
149
n
149
GLY
149
A
CYS
150
n
150
CYS
150
A
LYS
151
n
151
LYS
151
A
LEU
152
n
152
LEU
152
A
LEU
153
n
153
LEU
153
A
ASP
154
n
154
ASP
154
A
GLY
155
n
155
GLY
155
A
GLN
156
n
156
GLN
156
A
PHE
157
n
157
PHE
157
A
GLN
158
n
158
GLN
158
A
GLU
159
n
159
GLU
159
A
ASN
160
n
160
ASN
160
A
GLN
161
n
161
GLN
161
A
GLU
162
n
162
GLU
162
A
ILE
163
n
163
ILE
163
A
ALA
164
n
164
ALA
164
A
ASP
165
n
165
ASP
165
A
LEU
166
n
166
LEU
166
A
GLN
167
n
167
GLN
167
A
PHE
168
n
168
PHE
168
A
PHE
169
n
169
PHE
169
A
ALA
170
n
170
ALA
170
A
ILE
171
n
171
ILE
171
A
ASP
172
n
172
ASP
172
A
GLN
173
n
173
GLN
173
A
LEU
174
n
174
LEU
174
A
PRO
175
n
175
PRO
175
A
ASN
176
n
176
ASN
176
A
LEU
177
n
177
LEU
177
A
SER
178
n
178
SER
178
A
GLU
179
n
179
GLU
179
A
LYS
180
n
180
LYS
180
A
ARG
181
n
181
ARG
181
A
ILE
182
n
182
ILE
182
A
THR
183
n
183
THR
183
A
LYS
184
n
184
LYS
184
A
GLU
185
n
185
GLU
185
A
GLN
186
n
186
GLN
186
A
ILE
187
n
187
ILE
187
A
GLU
188
n
188
GLU
188
A
LEU
189
n
189
LEU
189
A
LEU
190
n
190
LEU
190
A
TRP
191
n
191
TRP
191
A
GLN
192
n
192
GLN
192
A
VAL
193
n
193
VAL
193
A
TYR
194
n
194
TYR
194
A
GLN
195
n
195
GLN
195
A
GLY
196
n
196
GLY
196
A
HIS
197
n
197
HIS
197
A
ARG
198
n
198
ARG
198
A
GLY
199
n
199
GLY
199
A
GLN
200
n
200
GLN
200
A
TYR
201
n
201
TYR
201
A
LEU
202
n
202
LEU
202
A
ASP
203
n
203
ASP
203
A
MET
1
n
1
MET
1
B
LYS
2
n
2
LYS
2
B
THR
3
n
3
THR
3
B
SER
4
n
4
SER
4
B
ASP
5
n
5
ASP
5
B
PHE
6
n
6
PHE
6
B
VAL
7
n
7
VAL
7
B
LYS
8
n
8
LYS
8
B
TYR
9
n
9
TYR
9
B
LEU
10
n
10
LEU
10
B
GLN
11
n
11
GLN
11
B
ARG
12
n
12
ARG
12
B
MET
13
n
13
MET
13
B
ILE
14
n
14
ILE
14
B
ALA
15
n
15
ALA
15
B
ILE
16
n
16
ILE
16
B
THR
17
n
17
THR
17
B
ASP
18
n
18
ASP
18
B
THR
19
n
19
THR
19
B
GLY
20
n
20
GLY
20
B
LEU
21
n
21
LEU
21
B
THR
22
n
22
THR
22
B
PHE
23
n
23
PHE
23
B
THR
24
n
24
THR
24
B
LYS
25
n
25
LYS
25
B
ASP
26
n
26
ASP
26
B
PRO
27
n
27
PRO
27
B
PHE
28
n
28
PHE
28
B
ASP
29
n
29
ASP
29
B
ARG
30
n
30
ARG
30
B
GLU
31
n
31
GLU
31
B
ARG
32
n
32
ARG
32
B
TYR
33
n
33
TYR
33
B
GLU
34
n
34
GLU
34
B
ASP
35
n
35
ASP
35
B
LEU
36
n
36
LEU
36
B
ARG
37
n
37
ARG
37
B
SER
38
n
38
SER
38
B
LEU
39
n
39
LEU
39
B
LEU
40
n
40
LEU
40
B
SER
41
n
41
SER
41
B
GLU
42
n
42
GLU
42
B
MET
43
n
43
MET
43
B
LEU
44
n
44
LEU
44
B
ASN
45
n
45
ASN
45
B
GLN
46
n
46
GLN
46
B
ALA
47
n
47
ALA
47
B
SER
48
n
48
SER
48
B
ASP
49
n
49
ASP
49
B
LEU
50
n
50
LEU
50
B
ASP
51
n
51
ASP
51
B
SER
52
n
52
SER
52
B
GLU
53
n
53
GLU
53
B
GLU
54
n
54
GLU
54
B
VAL
55
n
55
VAL
55
B
ALA
56
n
56
ALA
56
B
GLU
57
n
57
GLU
57
B
VAL
58
n
58
VAL
58
B
LEU
59
n
59
LEU
59
B
LYS
60
n
60
LYS
60
B
PRO
61
n
61
PRO
61
B
THR
62
n
62
THR
62
B
SER
63
n
63
SER
63
B
ALA
64
n
64
ALA
64
B
TYR
65
n
65
TYR
65
B
ALA
66
n
66
ALA
66
B
THR
67
n
67
THR
67
B
PRO
68
n
68
PRO
68
B
LEU
69
n
69
LEU
69
B
MET
70
n
70
MET
70
B
ASP
71
n
71
ASP
71
B
VAL
72
n
72
VAL
72
B
ARG
73
n
73
ARG
73
B
ALA
74
n
74
ALA
74
B
TRP
75
n
75
TRP
75
B
ILE
76
n
76
ILE
76
B
VAL
77
n
77
VAL
77
B
GLU
78
n
78
GLU
78
B
ASP
79
n
79
ASP
79
B
GLU
80
n
80
GLU
80
B
LYS
81
n
81
LYS
81
B
ILE
82
n
82
ILE
82
B
CYS
83
n
83
CYS
83
B
LEU
84
n
84
LEU
84
B
VAL
85
n
85
VAL
85
B
ARG
86
n
86
ARG
86
B
GLY
87
n
87
GLY
87
B
GLN
88
n
88
GLN
88
B
GLY
89
n
89
GLY
89
B
GLU
90
n
90
GLU
90
B
ASP
91
n
91
ASP
91
B
SER
92
n
92
SER
92
B
TRP
93
n
93
TRP
93
B
ALA
94
n
94
ALA
94
B
LEU
95
n
95
LEU
95
B
PRO
96
n
96
PRO
96
B
GLY
97
n
97
GLY
97
B
GLY
98
n
98
GLY
98
B
PHE
99
n
99
PHE
99
B
GLY
100
n
100
GLY
100
B
GLU
101
n
101
GLU
101
B
VAL
102
n
102
VAL
102
B
GLY
103
n
103
GLY
103
B
TYR
104
n
104
TYR
104
B
SER
105
n
105
SER
105
B
PRO
106
n
106
PRO
106
B
THR
107
n
107
THR
107
B
GLU
108
n
108
GLU
108
B
ASN
109
n
109
ASN
109
B
ILE
110
n
110
ILE
110
B
LEU
111
n
111
LEU
111
B
LYS
112
n
112
LYS
112
B
GLU
113
n
113
GLU
113
B
ILE
114
n
114
ILE
114
B
GLU
115
n
115
GLU
115
B
GLU
116
n
116
GLU
116
B
GLU
117
n
117
GLU
117
B
THR
118
n
118
THR
118
B
GLY
119
n
119
GLY
119
B
PHE
120
n
120
PHE
120
B
LYS
121
n
121
LYS
121
B
ALA
122
n
122
ALA
122
B
LYS
123
n
123
LYS
123
B
VAL
124
n
124
VAL
124
B
GLU
125
n
125
GLU
125
B
ARG
126
n
126
ARG
126
B
LEU
127
n
127
LEU
127
B
LEU
128
n
128
LEU
128
B
ALA
129
n
129
ALA
129
B
VAL
130
n
130
VAL
130
B
PHE
131
n
131
PHE
131
B
ASP
132
n
132
ASP
132
B
THR
133
n
133
THR
133
B
ASN
134
n
134
ASN
134
B
ARG
135
n
135
ARG
135
B
PHE
136
n
136
PHE
136
B
GLN
137
n
137
GLN
137
B
LEU
138
n
138
LEU
138
B
GLN
139
n
139
GLN
139
B
SER
140
n
140
SER
140
B
LYS
141
n
141
LYS
141
B
GLN
142
n
142
GLN
142
B
TYR
143
n
143
TYR
143
B
THR
144
n
144
THR
144
B
LYS
145
n
145
LYS
145
B
PHE
146
n
146
PHE
146
B
VAL
147
n
147
VAL
147
B
PHE
148
n
148
PHE
148
B
GLY
149
n
149
GLY
149
B
CYS
150
n
150
CYS
150
B
LYS
151
n
151
LYS
151
B
LEU
152
n
152
LEU
152
B
LEU
153
n
153
LEU
153
B
ASP
154
n
154
ASP
154
B
GLY
155
n
155
GLY
155
B
GLN
156
n
156
GLN
156
B
PHE
157
n
157
PHE
157
B
GLN
158
n
158
GLN
158
B
GLU
159
n
159
GLU
159
B
ASN
160
n
160
ASN
160
B
GLN
161
n
161
GLN
161
B
GLU
162
n
162
GLU
162
B
ILE
163
n
163
ILE
163
B
ALA
164
n
164
ALA
164
B
ASP
165
n
165
ASP
165
B
LEU
166
n
166
LEU
166
B
GLN
167
n
167
GLN
167
B
PHE
168
n
168
PHE
168
B
PHE
169
n
169
PHE
169
B
ALA
170
n
170
ALA
170
B
ILE
171
n
171
ILE
171
B
ASP
172
n
172
ASP
172
B
GLN
173
n
173
GLN
173
B
LEU
174
n
174
LEU
174
B
PRO
175
n
175
PRO
175
B
ASN
176
n
176
ASN
176
B
LEU
177
n
177
LEU
177
B
SER
178
n
178
SER
178
B
GLU
179
n
179
GLU
179
B
LYS
180
n
180
LYS
180
B
ARG
181
n
181
ARG
181
B
ILE
182
n
182
ILE
182
B
THR
183
n
183
THR
183
B
LYS
184
n
184
LYS
184
B
GLU
185
n
185
GLU
185
B
GLN
186
n
186
GLN
186
B
ILE
187
n
187
ILE
187
B
GLU
188
n
188
GLU
188
B
LEU
189
n
189
LEU
189
B
LEU
190
n
190
LEU
190
B
TRP
191
n
191
TRP
191
B
GLN
192
n
192
GLN
192
B
VAL
193
n
193
VAL
193
B
TYR
194
n
194
TYR
194
B
GLN
195
n
195
GLN
195
B
GLY
196
n
196
GLY
196
B
HIS
197
n
197
HIS
197
B
ARG
198
n
198
ARG
198
B
GLY
199
n
199
GLY
199
B
GLN
200
n
200
GLN
200
B
TYR
201
n
201
TYR
201
B
LEU
202
n
202
LEU
202
B
ASP
203
n
203
ASP
203
B
author_and_software_defined_assembly
PISA
2
dimeric
6230
-50
18340
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLY
98
A
O
GLY
98
A
N
VAL
72
A
N
VAL
72
A
N
TRP
75
A
N
TRP
75
A
O
PHE
148
A
O
PHE
148
A
O
LYS
145
A
O
LYS
145
A
N
PHE
131
A
N
PHE
131
A
N
VAL
130
A
N
VAL
130
A
O
TYR
201
A
O
TYR
201
A
N
GLU
78
A
N
GLU
78
A
O
LYS
81
A
O
LYS
81
A
N
VAL
85
A
N
VAL
85
A
O
ALA
94
A
O
ALA
94
A
N
GLU
78
A
N
GLU
78
A
O
LYS
81
A
O
LYS
81
A
N
ILE
82
A
N
ILE
82
A
O
PHE
169
A
O
PHE
169
B
O
GLY
98
B
O
GLY
98
B
N
VAL
72
B
N
VAL
72
B
N
TRP
75
B
N
TRP
75
B
O
PHE
148
B
O
PHE
148
B
O
LEU
153
B
O
LEU
153
B
N
LYS
121
B
N
LYS
121
B
N
VAL
130
B
N
VAL
130
B
O
TYR
201
B
O
TYR
201
B
N
GLU
78
B
N
GLU
78
B
O
LYS
81
B
O
LYS
81
B
N
VAL
85
B
N
VAL
85
B
O
ALA
94
B
O
ALA
94
B
N
GLU
78
B
N
GLU
78
B
O
LYS
81
B
O
LYS
81
B
N
LEU
84
B
N
LEU
84
B
O
GLN
167
B
O
GLN
167
1
-4.00
0.50
120.30
116.30
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
32
32
32
N
1
A
GLN
137
-157.23
67.49
1
A
LEU
153
-113.02
-127.86
1
B
GLN
137
-155.91
64.03
1
B
LEU
153
-112.07
-130.53
60.820
16.2237
6.970
-0.0900
-0.0500
0.0000
-0.0900
0.0000
0.1400
0.9670
0.9570
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : REFINED INDIVIDUALLY
0.1962
0.1724
0.1736
1.3900
67.5700
4437
84088
5.0000
99.8900
1.000
0.300
0.9110
0.0380
RANDOM
1
THROUGHOUT
0.000
SAD
0.0610
0.0620
0.8000
0.8000
1.2000
MAXIMUM LIKELIHOOD
MASK
1.3900
67.5700
509
3982
167
0
3306
0.008
0.020
3756
1.359
1.992
5063
5.492
5.000
460
33.287
25.368
190
11.302
15.000
671
19.709
15.000
21
0.083
0.200
543
0.006
0.021
2837
0.2550
0.2660
1.4260
306
6230
6536
20
99.4800
1.390
67.5700
4HFQ
88640
0.057
0.696
1
7.900
5.300
100.000
0.496
1.390
1.440
8881
0.955
1
3.900
100.000
0.292
1.440
1.500
8853
0.564
1
4.200
100.000
0.228
1.500
1.570
8848
0.527
1
4.700
100.000
0.200
1.570
1.650
8876
0.534
1
5.400
100.000
0.161
1.650
1.750
8868
0.591
1
5.700
100.000
0.116
1.750
1.890
8841
0.609
1
5.800
100.000
0.079
1.890
2.080
8866
0.645
1
5.800
100.000
0.057
2.080
2.380
8898
0.700
1
5.800
100.000
0.047
2.380
2.990
8843
0.807
1
5.900
100.000
0.035
2.990
50.000
8866
1.039
1
5.800
99.900
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Tom Terwilliger
terwilliger@LANL.gov
10-Aug-2002
http://www.solve.lanl.gov/
SOLVE
program
2.03
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.6.0117
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
Crystal structure of UDP-X diphosphatase
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
2
N
N
6
N
N
5
N
N
4
N
N
2
N
N
7
N
N
6
N
N
6
N
N
5
N
N
2
N
N
4
N
N
2
N
N
6
N
N
6
N
N
3
N
N
2
N
N
3
N
N
6
N
N
2
N
N
2
N
N
2
N
N
2
N
N
5
N
N
8
N
N
8
N
N
/
A
LYS
2
A
LYS
2
HELX_P
A
THR
24
A
THR
24
1
1
23
A
ASP
26
A
ASP
26
HELX_P
A
SER
48
A
SER
48
1
2
23
A
ASP
51
A
ASP
51
HELX_P
A
LYS
60
A
LYS
60
1
3
10
A
SER
105
A
SER
105
HELX_P
A
GLY
119
A
GLY
119
1
4
15
A
THR
133
A
THR
133
HELX_P
A
GLN
137
A
GLN
137
1
5
5
A
THR
183
A
THR
183
HELX_P
A
GLN
195
A
GLN
195
1
6
13
B
LYS
2
B
LYS
2
HELX_P
B
THR
24
B
THR
24
1
7
23
B
ASP
26
B
ASP
26
HELX_P
B
GLN
46
B
GLN
46
1
8
21
B
ASP
51
B
ASP
51
HELX_P
B
LYS
60
B
LYS
60
1
9
10
B
SER
105
B
SER
105
HELX_P
B
GLY
119
B
GLY
119
1
10
15
B
THR
133
B
THR
133
HELX_P
B
GLN
137
B
GLN
137
1
11
5
B
ALA
170
B
ALA
170
HELX_P
B
LEU
174
B
LEU
174
5
12
5
B
THR
183
B
THR
183
HELX_P
B
GLN
195
B
GLN
195
1
13
13
HYDROLASE
UDP-sugar diphosphatase, Nudix, hydrolase, RNA exonuclease, pyrophosphatase, Mur pathway
B
LYS
60
B
LYS
60
1
B
PRO
61
B
PRO
61
-0.16
Q97PF7_STRPN
UNP
1
1
Q97PF7
MKTSDFVKYLQRMIAITDTGLTFTKDPFDRERYEDLRSLLSEMLNQASDLDSEEVAEVLKPTSAYATPLMDVRAWIVEDE
KICLVRGQGEDSWALPGGFGEVGYSPTENILKEIEEETGFKAKVERLLAVFDTNRFQLQSKQYTKFVFGCKLLDGQFQEN
QEIADLQFFAIDQLPNLSEKRITKEQIELLWQVYQGHRGQYLD
1
203
4HFQ
1
203
Q97PF7
A
1
1
203
1
203
4HFQ
1
203
Q97PF7
B
1
1
203
5
3
3
5
3
3
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
97
A
GLY
97
A
PHE
99
A
PHE
99
A
LEU
69
A
LEU
69
A
TRP
75
A
TRP
75
A
TYR
143
A
TYR
143
A
GLY
155
A
GLY
155
A
PHE
120
A
PHE
120
A
ASP
132
A
ASP
132
A
TYR
201
A
TYR
201
A
LEU
202
A
LEU
202
A
VAL
77
A
VAL
77
A
GLU
78
A
GLU
78
A
LYS
81
A
LYS
81
A
GLY
87
A
GLY
87
A
TRP
93
A
TRP
93
A
ALA
94
A
ALA
94
A
VAL
77
A
VAL
77
A
GLU
78
A
GLU
78
A
LYS
81
A
LYS
81
A
GLY
87
A
GLY
87
A
ILE
163
A
ILE
163
A
ALA
170
A
ALA
170
B
GLY
97
B
GLY
97
B
PHE
99
B
PHE
99
B
LEU
69
B
LEU
69
B
TRP
75
B
TRP
75
B
TYR
143
B
TYR
143
B
GLY
155
B
GLY
155
B
PHE
120
B
PHE
120
B
ASP
132
B
ASP
132
B
TYR
201
B
TYR
201
B
LEU
202
B
LEU
202
B
VAL
77
B
VAL
77
B
GLU
78
B
GLU
78
B
LYS
81
B
LYS
81
B
GLY
87
B
GLY
87
B
TRP
93
B
TRP
93
B
ALA
94
B
ALA
94
B
VAL
77
B
VAL
77
B
GLU
78
B
GLU
78
B
LYS
81
B
LYS
81
B
GLY
87
B
GLY
87
B
ILE
163
B
ILE
163
B
PHE
169
B
PHE
169
BINDING SITE FOR RESIDUE EDO A 301
A
EDO
301
Software
6
BINDING SITE FOR RESIDUE EDO A 302
A
EDO
302
Software
3
BINDING SITE FOR RESIDUE TRS A 303
A
TRS
303
Software
10
BINDING SITE FOR RESIDUE SO4 A 304
A
SO4
304
Software
9
BINDING SITE FOR RESIDUE SO4 A 305
A
SO4
305
Software
8
BINDING SITE FOR RESIDUE SO4 A 306
A
SO4
306
Software
6
BINDING SITE FOR RESIDUE PEG A 307
A
PEG
307
Software
8
BINDING SITE FOR RESIDUE EDO A 308
A
EDO
308
Software
4
BINDING SITE FOR RESIDUE GOL A 309
A
GOL
309
Software
7
BINDING SITE FOR RESIDUE PEG A 310
A
PEG
310
Software
8
BINDING SITE FOR RESIDUE SO4 A 311
A
SO4
311
Software
5
BINDING SITE FOR RESIDUE EDO A 312
A
EDO
312
Software
7
BINDING SITE FOR RESIDUE PGE A 313
A
PGE
313
Software
14
BINDING SITE FOR RESIDUE GOL A 314
A
GOL
314
Software
9
BINDING SITE FOR RESIDUE GOL A 315
A
GOL
315
Software
7
BINDING SITE FOR RESIDUE PEG A 316
A
PEG
316
Software
6
BINDING SITE FOR RESIDUE EDO A 317
A
EDO
317
Software
7
BINDING SITE FOR RESIDUE SO4 B 301
B
SO4
301
Software
6
BINDING SITE FOR RESIDUE EDO B 302
B
EDO
302
Software
5
BINDING SITE FOR RESIDUE GOL B 303
B
GOL
303
Software
9
BINDING SITE FOR RESIDUE GOL B 304
B
GOL
304
Software
7
BINDING SITE FOR RESIDUE TRS B 305
B
TRS
305
Software
11
BINDING SITE FOR RESIDUE EDO B 306
B
EDO
306
Software
9
BINDING SITE FOR RESIDUE TRS B 307
B
TRS
307
Software
8
BINDING SITE FOR RESIDUE GOL B 308
B
GOL
308
Software
8
BINDING SITE FOR RESIDUE EDO B 309
B
EDO
309
Software
5
BINDING SITE FOR RESIDUE EDO B 310
B
EDO
310
Software
7
BINDING SITE FOR RESIDUE EDO B 311
B
EDO
311
Software
4
BINDING SITE FOR RESIDUE EDO B 312
B
EDO
312
Software
6
BINDING SITE FOR RESIDUE PEG B 313
B
PEG
313
Software
10
A
LEU
177
A
LEU
177
6
1_555
A
SER
178
A
SER
178
6
1_555
A
GLU
179
A
GLU
179
6
1_555
A
LYS
180
A
LYS
180
6
1_555
A
PEG
310
L
PEG
6
1_555
A
HOH
464
GA
HOH
6
1_555
A
ASP
5
A
ASP
5
3
1_555
A
TYR
9
A
TYR
9
3
1_555
A
HOH
632
GA
HOH
3
1_555
A
ASP
71
A
ASP
71
10
1_555
A
ARG
73
A
ARG
73
10
1_555
A
GLN
139
A
GLN
139
10
1_555
A
TYR
143
A
TYR
143
10
1_555
A
LYS
145
A
LYS
145
10
1_555
A
LYS
180
A
LYS
180
10
1_555
A
ARG
181
A
ARG
181
10
1_555
A
HOH
427
GA
HOH
10
1_555
A
HOH
578
GA
HOH
10
1_555
B
PRO
61
B
PRO
61
10
1_555
A
ARG
73
A
ARG
73
9
1_555
A
VAL
85
A
VAL
85
9
1_555
A
GLY
97
A
GLY
97
9
1_555
A
GLU
117
A
GLU
117
9
1_555
A
GLU
162
A
GLU
162
9
1_555
A
ARG
181
A
ARG
181
9
1_555
A
HOH
430
GA
HOH
9
1_555
A
HOH
442
GA
HOH
9
1_555
A
HOH
593
GA
HOH
9
1_555
A
ARG
86
A
ARG
86
8
1_555
A
TRP
191
A
TRP
191
8
2_665
A
GLN
192
A
GLN
192
8
2_665
A
GLN
195
A
GLN
195
8
2_665
A
HIS
197
A
HIS
197
8
2_665
A
HOH
413
GA
HOH
8
1_555
A
HOH
616
GA
HOH
8
1_555
A
HOH
617
GA
HOH
8
1_555
A
GLU
101
A
GLU
101
6
1_555
A
TYR
104
A
TYR
104
6
1_555
A
LYS
112
A
LYS
112
6
1_555
B
LYS
8
B
LYS
8
6
2_655
B
ARG
12
B
ARG
12
6
2_655
B
HOH
509
HA
HOH
6
2_655
A
LEU
111
A
LEU
111
8
1_555
A
LYS
112
A
LYS
112
8
1_555
A
GLU
115
A
GLU
115
8
1_555
A
LYS
121
A
LYS
121
8
1_555
A
ALA
122
A
ALA
122
8
1_555
A
HOH
445
GA
HOH
8
1_555
A
HOH
446
GA
HOH
8
1_555
A
HOH
470
GA
HOH
8
1_555
A
LYS
8
A
LYS
8
4
1_555
A
ASN
134
A
ASN
134
4
1_555
A
HOH
420
GA
HOH
4
1_555
B
HOH
571
HA
HOH
4
1_555
A
ARG
135
A
ARG
135
7
1_555
A
ASP
203
A
ASP
203
7
1_555
A
HOH
438
GA
HOH
7
1_555
A
HOH
605
GA
HOH
7
1_555
A
HOH
633
GA
HOH
7
1_555
B
SER
105
B
SER
105
7
1_555
B
GLU
108
B
GLU
108
7
1_555
A
ASN
176
A
ASN
176
8
1_555
A
LEU
177
A
LEU
177
8
1_555
A
GLU
179
A
GLU
179
8
1_555
A
LYS
184
A
LYS
184
8
1_555
A
EDO
301
C
EDO
8
1_555
A
HOH
414
GA
HOH
8
1_555
A
HOH
462
GA
HOH
8
1_555
A
HOH
629
GA
HOH
8
1_555
A
LYS
2
A
LYS
2
5
1_555
A
THR
3
A
THR
3
5
1_555
A
SER
4
A
SER
4
5
1_555
A
HOH
498
GA
HOH
5
1_555
A
HOH
508
GA
HOH
5
1_555
A
ALA
66
A
ALA
66
7
1_555
A
HOH
429
GA
HOH
7
1_555
A
HOH
485
GA
HOH
7
1_555
A
HOH
511
GA
HOH
7
1_555
B
PHE
99
B
PHE
99
7
1_555
B
GLY
100
B
GLY
100
7
1_555
B
GLU
101
B
GLU
101
7
1_555
A
THR
62
A
THR
62
14
1_555
A
SER
63
A
SER
63
14
1_555
A
TYR
65
A
TYR
65
14
1_555
A
ALA
66
A
ALA
66
14
1_555
A
THR
67
A
THR
67
14
1_555
A
LEU
69
A
LEU
69
14
1_555
A
LYS
141
A
LYS
141
14
1_555
A
GLN
142
A
GLN
142
14
1_555
A
HOH
412
GA
HOH
14
1_555
A
HOH
416
GA
HOH
14
1_555
A
HOH
502
GA
HOH
14
1_555
A
HOH
584
GA
HOH
14
1_555
B
LEU
69
B
LEU
69
14
1_555
B
VAL
102
B
VAL
102
14
1_555
A
SER
63
A
SER
63
9
1_555
A
VAL
102
A
VAL
102
9
1_555
A
HOH
507
GA
HOH
9
1_555
B
ALA
15
B
ALA
15
9
2_655
B
LEU
69
B
LEU
69
9
1_555
B
LYS
141
B
LYS
141
9
1_555
B
GLN
142
B
GLN
142
9
1_555
B
HOH
415
HA
HOH
9
1_555
B
HOH
441
HA
HOH
9
2_655
A
GLU
78
A
GLU
78
7
1_555
A
PHE
120
A
PHE
120
7
1_555
A
LEU
152
A
LEU
152
7
1_555
A
PHE
168
A
PHE
168
7
1_555
A
HOH
532
GA
HOH
7
1_555
A
HOH
534
GA
HOH
7
1_555
A
HOH
590
GA
HOH
7
1_555
A
ASP
91
A
ASP
91
6
1_555
A
TRP
93
A
TRP
93
6
1_555
A
GLN
167
A
GLN
167
6
1_555
A
ASN
176
A
ASN
176
6
1_555
A
EDO
317
S
EDO
6
2_665
A
HOH
408
GA
HOH
6
2_665
A
ASP
91
A
ASP
91
7
3_564
A
ASN
176
A
ASN
176
7
3_564
A
LEU
189
A
LEU
189
7
1_555
A
GLN
192
A
GLN
192
7
1_555
A
ARG
198
A
ARG
198
7
1_555
A
PEG
316
R
PEG
7
3_564
A
HOH
408
GA
HOH
7
1_555
B
GLN
139
B
GLN
139
6
1_555
B
SER
140
B
SER
140
6
1_555
B
LYS
180
B
LYS
180
6
1_555
B
EDO
302
U
EDO
6
1_555
B
HOH
432
HA
HOH
6
1_555
B
HOH
461
HA
HOH
6
2_655
B
ASN
45
B
ASN
45
5
2_655
B
LEU
138
B
LEU
138
5
1_555
B
SO4
301
T
SO4
5
1_555
B
HOH
528
HA
HOH
5
2_655
B
HOH
530
HA
HOH
5
2_655
B
ARG
73
B
ARG
73
9
1_555
B
GLN
139
B
GLN
139
9
1_555
B
TYR
143
B
TYR
143
9
1_555
B
LYS
145
B
LYS
145
9
1_555
B
LYS
180
B
LYS
180
9
1_555
B
ARG
181
B
ARG
181
9
1_555
B
TRS
305
X
TRS
9
1_555
B
HOH
477
HA
HOH
9
1_555
B
HOH
626
HA
HOH
9
1_555
B
GLU
78
B
GLU
78
7
1_555
B
PHE
120
B
PHE
120
7
1_555
B
PHE
168
B
PHE
168
7
1_555
B
HOH
438
HA
HOH
7
1_555
B
HOH
534
HA
HOH
7
1_555
B
HOH
543
HA
HOH
7
1_555
B
HOH
640
HA
HOH
7
1_555
B
ARG
73
B
ARG
73
11
1_555
B
GLY
97
B
GLY
97
11
1_555
B
GLU
117
B
GLU
117
11
1_555
B
GLU
162
B
GLU
162
11
1_555
B
ILE
163
B
ILE
163
11
1_555
B
ARG
181
B
ARG
181
11
1_555
B
GOL
303
V
GOL
11
1_555
B
HOH
439
HA
HOH
11
1_555
B
HOH
477
HA
HOH
11
1_555
B
HOH
596
HA
HOH
11
1_555
B
HOH
633
HA
HOH
11
1_555
A
PRO
68
A
PRO
68
9
1_555
A
LEU
69
A
LEU
69
9
1_555
A
MET
70
A
MET
70
9
1_555
A
THR
144
A
THR
144
9
1_555
B
PRO
68
B
PRO
68
9
1_555
B
MET
70
B
MET
70
9
1_555
B
THR
144
B
THR
144
9
1_555
B
PHE
146
B
PHE
146
9
1_555
B
HOH
544
HA
HOH
9
1_555
A
LYS
123
A
LYS
123
8
3_554
B
LEU
177
B
LEU
177
8
1_555
B
SER
178
B
SER
178
8
1_555
B
GLU
179
B
GLU
179
8
1_555
B
LYS
180
B
LYS
180
8
1_555
B
HOH
559
HA
HOH
8
1_555
B
HOH
604
HA
HOH
8
1_555
B
HOH
615
HA
HOH
8
1_555
A
ARG
12
A
ARG
12
8
1_555
B
GLU
31
B
GLU
31
8
1_555
B
ASP
35
B
ASP
35
8
1_555
B
GLU
101
B
GLU
101
8
1_555
B
LYS
112
B
LYS
112
8
1_555
B
GLU
116
B
GLU
116
8
1_555
B
HOH
417
HA
HOH
8
1_555
B
HOH
525
HA
HOH
8
1_555
A
LEU
21
A
LEU
21
5
3_664
A
THR
22
A
THR
22
5
3_664
B
HOH
446
HA
HOH
5
1_555
B
HOH
618
HA
HOH
5
1_555
B
HOH
620
HA
HOH
5
1_555
A
ARG
30
A
ARG
30
7
3_664
A
HOH
441
GA
HOH
7
3_664
B
THR
24
B
THR
24
7
1_555
B
LYS
25
B
LYS
25
7
1_555
B
PRO
27
B
PRO
27
7
1_555
B
ARG
30
B
ARG
30
7
1_555
B
HOH
516
HA
HOH
7
1_555
B
LEU
202
B
LEU
202
4
1_555
B
PEG
313
FA
PEG
4
1_555
B
HOH
542
HA
HOH
4
1_555
B
HOH
643
HA
HOH
4
1_555
B
ARG
86
B
ARG
86
6
2_555
B
TRP
93
B
TRP
93
6
2_555
B
GLY
196
B
GLY
196
6
1_555
B
ARG
198
B
ARG
198
6
1_555
B
GLY
199
B
GLY
199
6
1_555
B
HOH
428
HA
HOH
6
2_555
B
LEU
174
B
LEU
174
10
2_555
B
PRO
175
B
PRO
175
10
2_555
B
ARG
198
B
ARG
198
10
1_555
B
GLY
199
B
GLY
199
10
1_555
B
GLN
200
B
GLN
200
10
1_555
B
TYR
201
B
TYR
201
10
1_555
B
LEU
202
B
LEU
202
10
1_555
B
EDO
311
DA
EDO
10
1_555
B
HOH
440
HA
HOH
10
1_555
B
HOH
567
HA
HOH
10
1_555
144
P 31