0.014331
0.000000
0.005813
0.000000
0.016223
0.000000
0.000000
0.000000
0.015120
0.00000
0.00000
0.00000
To, T.K.
Kotra, L.P.
Pai, E.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
112.08
90.00
69.780
61.640
71.370
C9 H14 N3 O9 P
339.196
n
N-hydroxycytidine 5'-(dihydrogen phosphate)
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
N
14
N
N
N
15
N
C
N
16
N
O
N
17
N
N
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
N
N
38
S
C
N
39
N
C
N
40
N
O
N
41
N
C
N
42
N
O
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
N
N
51
S
C
N
52
N
C
N
53
N
O
N
54
N
C
N
55
N
C
N
56
N
C
N
57
N
N
N
58
N
C
N
59
N
N
N
60
N
N
N
61
N
O
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
C
N
83
N
O
N
84
N
N
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
O
N
101
N
O
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
CL
N
111
N
N
N
112
R
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
S
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
N
N
126
S
C
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
N
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
S
C
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
O
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
C
N
175
N
O
N
176
N
C
N
177
N
O
N
178
N
C
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
Y
193
N
C
Y
194
N
N
Y
195
N
C
Y
196
N
C
Y
197
N
N
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
S
C
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
N
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
S
C
N
283
N
C
N
284
N
O
N
285
N
C
N
286
N
C
N
287
N
S
N
288
N
C
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
R
C
N
360
N
O
N
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
N
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
N
410
N
O
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
N
428
N
C
N
429
N
C
N
430
N
O
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
doub
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
doub
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
doub
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
doub
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
55
9988
9997
10.1021/jm301176r
22991951
Novel cytidine-based orotidine-5'-monophosphate decarboxylase inhibitors with an unusual twist.
2012
10.2210/pdb4hib/pdb
pdb_00004hib
100
1
DCM with cryo-cooled 1st crystal sagittally bent 2nd crystal followed by vertically focusing
CCD
2011-01-26
MARMOSAIC 300 mm CCD
20mm hydrid small gap in-vacuum undulator
SINGLE WAVELENGTH
M
x-ray
1
0.979490
1.0
08ID-1
CLSI
0.979490
SYNCHROTRON
CLSI BEAMLINE 08ID-1
34054.156
Uridine 5'-monophosphate synthase
4.1.1.23
UNP residues 190-480
2
man
polymer
92.094
GLYCEROL
1
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
339.196
N-hydroxycytidine 5'-(dihydrogen phosphate)
2
syn
non-polymer
18.015
water
116
nat
water
UMP synthase, Orotate phosphoribosyltransferase, OPRT, OPRTase, Orotidine 5'-phosphate decarboxylase, ODC, OMPdecase
no
no
MGSSHHHHHHSSGLVPRGSHMDAETVGRVKRFIQENVFVAANHNGSPLSIKEAPKELSFGARAELPRIHPVASKLLRLMQ
KKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQYEG
GIFKIASWADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSM
KPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRLGV
MGSSHHHHHHSSGLVPRGSHMDAETVGRVKRFIQENVFVAANHNGSPLSIKEAPKELSFGARAELPRIHPVASKLLRLMQ
KKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQYEG
GIFKIASWADLVNAHVVPGSGVVKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSM
KPEFLHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRLGV
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
UMPS, OK/SW-cl.21
9606
Homo sapiens
562
Escherichia coli
1
2.09
41.10
VAPOR DIFFUSION, HANGING DROP
7.5
1.6M-1.7M Ammonium sulphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
atom_site
chem_comp
pdbx_unobs_or_zero_occ_atoms
pdbx_validate_close_contact
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_unobs_or_zero_occ_atoms
repository
Initial release
Database references
Advisory
Atomic model
Data collection
Database references
Derived calculations
Advisory
Data collection
Database references
Refinement description
1
0
2012-11-14
1
1
2012-12-19
2
0
2021-08-04
2
1
2023-09-20
_atom_site.auth_atom_id
_atom_site.label_atom_id
_chem_comp.mon_nstd_flag
_chem_comp.type
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
RCSB
Y
RCSB
2012-10-11
REL
REL
GOL
GLYCEROL
CL
CHLORIDE ION
16B
N-hydroxycytidine 5'-(dihydrogen phosphate)
HOH
water
2QCM
PDB
experimental model
GOL
1
2
GOL
GOL
301
A
CL
1
3
CL
CL
302
A
CL
1
3
CL
CL
303
A
16B
1
4
16B
16B
304
A
16B
1
4
16B
16B
301
B
HOH
3
5
HOH
HOH
401
A
HOH
4
5
HOH
HOH
402
A
HOH
9
5
HOH
HOH
403
A
HOH
15
5
HOH
HOH
404
A
HOH
16
5
HOH
HOH
405
A
HOH
18
5
HOH
HOH
406
A
HOH
20
5
HOH
HOH
407
A
HOH
23
5
HOH
HOH
408
A
HOH
26
5
HOH
HOH
409
A
HOH
28
5
HOH
HOH
410
A
HOH
29
5
HOH
HOH
411
A
HOH
31
5
HOH
HOH
412
A
HOH
34
5
HOH
HOH
413
A
HOH
37
5
HOH
HOH
414
A
HOH
38
5
HOH
HOH
415
A
HOH
39
5
HOH
HOH
416
A
HOH
42
5
HOH
HOH
417
A
HOH
43
5
HOH
HOH
418
A
HOH
44
5
HOH
HOH
419
A
HOH
45
5
HOH
HOH
420
A
HOH
46
5
HOH
HOH
421
A
HOH
47
5
HOH
HOH
422
A
HOH
48
5
HOH
HOH
423
A
HOH
50
5
HOH
HOH
424
A
HOH
51
5
HOH
HOH
425
A
HOH
54
5
HOH
HOH
426
A
HOH
57
5
HOH
HOH
427
A
HOH
60
5
HOH
HOH
428
A
HOH
63
5
HOH
HOH
429
A
HOH
65
5
HOH
HOH
430
A
HOH
67
5
HOH
HOH
431
A
HOH
73
5
HOH
HOH
432
A
HOH
75
5
HOH
HOH
433
A
HOH
76
5
HOH
HOH
434
A
HOH
78
5
HOH
HOH
435
A
HOH
79
5
HOH
HOH
436
A
HOH
81
5
HOH
HOH
437
A
HOH
83
5
HOH
HOH
438
A
HOH
91
5
HOH
HOH
439
A
HOH
92
5
HOH
HOH
440
A
HOH
96
5
HOH
HOH
441
A
HOH
97
5
HOH
HOH
442
A
HOH
98
5
HOH
HOH
443
A
HOH
99
5
HOH
HOH
444
A
HOH
103
5
HOH
HOH
445
A
HOH
104
5
HOH
HOH
446
A
HOH
114
5
HOH
HOH
447
A
HOH
115
5
HOH
HOH
448
A
HOH
117
5
HOH
HOH
449
A
HOH
123
5
HOH
HOH
450
A
HOH
126
5
HOH
HOH
451
A
HOH
138
5
HOH
HOH
452
A
HOH
139
5
HOH
HOH
453
A
HOH
140
5
HOH
HOH
454
A
HOH
144
5
HOH
HOH
455
A
HOH
145
5
HOH
HOH
456
A
HOH
146
5
HOH
HOH
457
A
HOH
158
5
HOH
HOH
458
A
HOH
161
5
HOH
HOH
459
A
HOH
173
5
HOH
HOH
460
A
HOH
174
5
HOH
HOH
461
A
HOH
181
5
HOH
HOH
462
A
HOH
182
5
HOH
HOH
463
A
HOH
185
5
HOH
HOH
464
A
HOH
186
5
HOH
HOH
465
A
HOH
187
5
HOH
HOH
466
A
HOH
2
5
HOH
HOH
401
B
HOH
5
5
HOH
HOH
402
B
HOH
7
5
HOH
HOH
403
B
HOH
8
5
HOH
HOH
404
B
HOH
10
5
HOH
HOH
405
B
HOH
11
5
HOH
HOH
406
B
HOH
13
5
HOH
HOH
407
B
HOH
14
5
HOH
HOH
408
B
HOH
17
5
HOH
HOH
409
B
HOH
19
5
HOH
HOH
410
B
HOH
21
5
HOH
HOH
411
B
HOH
22
5
HOH
HOH
412
B
HOH
24
5
HOH
HOH
413
B
HOH
25
5
HOH
HOH
414
B
HOH
27
5
HOH
HOH
415
B
HOH
32
5
HOH
HOH
416
B
HOH
33
5
HOH
HOH
417
B
HOH
35
5
HOH
HOH
418
B
HOH
36
5
HOH
HOH
419
B
HOH
41
5
HOH
HOH
420
B
HOH
52
5
HOH
HOH
421
B
HOH
55
5
HOH
HOH
422
B
HOH
58
5
HOH
HOH
423
B
HOH
59
5
HOH
HOH
424
B
HOH
61
5
HOH
HOH
425
B
HOH
62
5
HOH
HOH
426
B
HOH
64
5
HOH
HOH
427
B
HOH
68
5
HOH
HOH
428
B
HOH
69
5
HOH
HOH
429
B
HOH
70
5
HOH
HOH
430
B
HOH
72
5
HOH
HOH
431
B
HOH
77
5
HOH
HOH
432
B
HOH
80
5
HOH
HOH
433
B
HOH
82
5
HOH
HOH
434
B
HOH
85
5
HOH
HOH
435
B
HOH
89
5
HOH
HOH
436
B
HOH
93
5
HOH
HOH
437
B
HOH
113
5
HOH
HOH
438
B
HOH
124
5
HOH
HOH
439
B
HOH
150
5
HOH
HOH
440
B
HOH
151
5
HOH
HOH
441
B
HOH
153
5
HOH
HOH
442
B
HOH
159
5
HOH
HOH
443
B
HOH
163
5
HOH
HOH
444
B
HOH
176
5
HOH
HOH
445
B
HOH
179
5
HOH
HOH
446
B
HOH
188
5
HOH
HOH
447
B
HOH
189
5
HOH
HOH
448
B
HOH
190
5
HOH
HOH
449
B
HOH
191
5
HOH
HOH
450
B
2.100
2.100
45.090
45.090
n
1
-20
A
n
2
-19
A
n
3
-18
A
n
4
-17
A
n
5
-16
A
n
6
-15
A
n
7
-14
A
n
8
-13
A
n
9
-12
A
n
10
-11
A
n
11
-10
A
n
12
-9
A
n
13
-8
A
n
14
-7
A
n
15
-6
A
n
16
-5
A
n
17
-4
A
n
18
-3
A
n
19
-2
A
n
20
-1
A
n
21
0
A
n
22
1
A
n
23
2
A
n
24
3
A
n
25
4
A
n
26
5
A
n
27
6
A
n
28
7
A
n
29
8
A
n
30
9
A
n
31
10
A
n
32
11
A
n
33
12
A
n
34
13
A
n
35
14
A
n
36
15
A
n
37
16
A
n
38
17
A
n
39
18
A
n
40
19
A
n
41
20
A
n
42
21
A
n
43
22
A
n
44
23
A
n
45
24
A
n
46
25
A
n
47
26
A
n
48
27
A
n
49
28
A
n
50
29
A
n
51
30
A
n
52
31
A
n
53
32
A
n
54
33
A
n
55
34
A
GLU
35
n
56
GLU
35
A
LEU
36
n
57
LEU
36
A
SER
37
n
58
SER
37
A
PHE
38
n
59
PHE
38
A
GLY
39
n
60
GLY
39
A
ALA
40
n
61
ALA
40
A
ARG
41
n
62
ARG
41
A
ALA
42
n
63
ALA
42
A
GLU
43
n
64
GLU
43
A
LEU
44
n
65
LEU
44
A
PRO
45
n
66
PRO
45
A
ARG
46
n
67
ARG
46
A
ILE
47
n
68
ILE
47
A
HIS
48
n
69
HIS
48
A
PRO
49
n
70
PRO
49
A
VAL
50
n
71
VAL
50
A
ALA
51
n
72
ALA
51
A
SER
52
n
73
SER
52
A
LYS
53
n
74
LYS
53
A
LEU
54
n
75
LEU
54
A
LEU
55
n
76
LEU
55
A
ARG
56
n
77
ARG
56
A
LEU
57
n
78
LEU
57
A
MET
58
n
79
MET
58
A
GLN
59
n
80
GLN
59
A
LYS
60
n
81
LYS
60
A
LYS
61
n
82
LYS
61
A
GLU
62
n
83
GLU
62
A
THR
63
n
84
THR
63
A
ASN
64
n
85
ASN
64
A
LEU
65
n
86
LEU
65
A
CYS
66
n
87
CYS
66
A
LEU
67
n
88
LEU
67
A
SER
68
n
89
SER
68
A
ALA
69
n
90
ALA
69
A
ASP
70
n
91
ASP
70
A
VAL
71
n
92
VAL
71
A
SER
72
n
93
SER
72
A
LEU
73
n
94
LEU
73
A
ALA
74
n
95
ALA
74
A
ARG
75
n
96
ARG
75
A
GLU
76
n
97
GLU
76
A
LEU
77
n
98
LEU
77
A
LEU
78
n
99
LEU
78
A
GLN
79
n
100
GLN
79
A
LEU
80
n
101
LEU
80
A
ALA
81
n
102
ALA
81
A
ASP
82
n
103
ASP
82
A
ALA
83
n
104
ALA
83
A
LEU
84
n
105
LEU
84
A
GLY
85
n
106
GLY
85
A
PRO
86
n
107
PRO
86
A
SER
87
n
108
SER
87
A
ILE
88
n
109
ILE
88
A
CYS
89
n
110
CYS
89
A
MET
90
n
111
MET
90
A
LEU
91
n
112
LEU
91
A
LYS
92
n
113
LYS
92
A
THR
93
n
114
THR
93
A
HIS
94
n
115
HIS
94
A
VAL
95
n
116
VAL
95
A
ASP
96
n
117
ASP
96
A
ILE
97
n
118
ILE
97
A
LEU
98
n
119
LEU
98
A
ASN
99
n
120
ASN
99
A
ASP
100
n
121
ASP
100
A
PHE
101
n
122
PHE
101
A
THR
102
n
123
THR
102
A
LEU
103
n
124
LEU
103
A
ASP
104
n
125
ASP
104
A
VAL
105
n
126
VAL
105
A
MET
106
n
127
MET
106
A
LYS
107
n
128
LYS
107
A
GLU
108
n
129
GLU
108
A
LEU
109
n
130
LEU
109
A
ILE
110
n
131
ILE
110
A
THR
111
n
132
THR
111
A
LEU
112
n
133
LEU
112
A
ALA
113
n
134
ALA
113
A
LYS
114
n
135
LYS
114
A
CYS
115
n
136
CYS
115
A
HIS
116
n
137
HIS
116
A
GLU
117
n
138
GLU
117
A
PHE
118
n
139
PHE
118
A
LEU
119
n
140
LEU
119
A
ILE
120
n
141
ILE
120
A
PHE
121
n
142
PHE
121
A
GLU
122
n
143
GLU
122
A
ASN
123
n
144
ASP
123
A
ARG
124
n
145
ARG
124
A
LYS
125
n
146
LYS
125
A
PHE
126
n
147
PHE
126
A
ALA
127
n
148
ALA
127
A
ASP
128
n
149
ASP
128
A
ILE
129
n
150
ILE
129
A
GLY
130
n
151
GLY
130
A
ASN
131
n
152
ASN
131
A
THR
132
n
153
THR
132
A
VAL
133
n
154
VAL
133
A
LYS
134
n
155
LYS
134
A
LYS
135
n
156
LYS
135
A
GLN
136
n
157
GLN
136
A
TYR
137
n
158
TYR
137
A
GLU
138
n
159
GLU
138
A
GLY
139
n
160
GLY
139
A
GLY
140
n
161
GLY
140
A
ILE
141
n
162
ILE
141
A
PHE
142
n
163
PHE
142
A
LYS
143
n
164
LYS
143
A
ILE
144
n
165
ILE
144
A
ALA
145
n
166
ALA
145
A
SER
146
n
167
SER
146
A
TRP
147
n
168
TRP
147
A
ALA
148
n
169
ALA
148
A
ASP
149
n
170
ASP
149
A
LEU
150
n
171
LEU
150
A
VAL
151
n
172
VAL
151
A
ASN
152
n
173
ASN
152
A
ALA
153
n
174
ALA
153
A
HIS
154
n
175
HIS
154
A
VAL
155
n
176
VAL
155
A
VAL
156
n
177
VAL
156
A
PRO
157
n
178
PRO
157
A
GLY
158
n
179
GLY
158
A
SER
159
n
180
SER
159
A
GLY
160
n
181
GLY
160
A
VAL
161
n
182
VAL
161
A
VAL
162
n
183
VAL
162
A
LYS
163
n
184
LYS
163
A
GLY
164
n
185
GLY
164
A
LEU
165
n
186
LEU
165
A
GLN
166
n
187
GLN
166
A
GLU
167
n
188
GLU
167
A
VAL
168
n
189
VAL
168
A
GLY
169
n
190
GLY
169
A
LEU
170
n
191
LEU
170
A
PRO
171
n
192
PRO
171
A
LEU
172
n
193
LEU
172
A
HIS
173
n
194
HIS
173
A
ARG
174
n
195
ARG
174
A
GLY
175
n
196
GLY
175
A
CYS
176
n
197
CYS
176
A
LEU
177
n
198
LEU
177
A
LEU
178
n
199
LEU
178
A
ILE
179
n
200
ILE
179
A
ALA
180
n
201
ALA
180
A
GLU
181
n
202
GLU
181
A
MET
182
n
203
MET
182
A
SER
183
n
204
SER
183
A
SER
184
n
205
SER
184
A
THR
185
n
206
THR
185
A
GLY
186
n
207
GLY
186
A
SER
187
n
208
SER
187
A
LEU
188
n
209
LEU
188
A
ALA
189
n
210
ALA
189
A
THR
190
n
211
THR
190
A
GLY
191
n
212
GLY
191
A
ASP
192
n
213
ASP
192
A
TYR
193
n
214
TYR
193
A
THR
194
n
215
THR
194
A
ARG
195
n
216
ARG
195
A
ALA
196
n
217
ALA
196
A
ALA
197
n
218
ALA
197
A
VAL
198
n
219
VAL
198
A
ARG
199
n
220
ARG
199
A
MET
200
n
221
MET
200
A
ALA
201
n
222
ALA
201
A
GLU
202
n
223
GLU
202
A
GLU
203
n
224
GLU
203
A
HIS
204
n
225
HIS
204
A
SER
205
n
226
SER
205
A
GLU
206
n
227
GLU
206
A
PHE
207
n
228
PHE
207
A
VAL
208
n
229
VAL
208
A
VAL
209
n
230
VAL
209
A
GLY
210
n
231
GLY
210
A
PHE
211
n
232
PHE
211
A
ILE
212
n
233
ILE
212
A
SER
213
n
234
SER
213
A
GLY
214
n
235
GLY
214
A
SER
215
n
236
SER
215
A
ARG
216
n
237
ARG
216
A
VAL
217
n
238
VAL
217
A
SER
218
n
239
SER
218
A
MET
219
n
240
MET
219
A
LYS
220
n
241
LYS
220
A
PRO
221
n
242
PRO
221
A
GLU
222
n
243
GLU
222
A
PHE
223
n
244
PHE
223
A
LEU
224
n
245
LEU
224
A
HIS
225
n
246
HIS
225
A
LEU
226
n
247
LEU
226
A
THR
227
n
248
THR
227
A
PRO
228
n
249
PRO
228
A
GLY
229
n
250
GLY
229
A
VAL
230
n
251
VAL
230
A
GLN
231
n
252
GLN
231
A
LEU
232
n
253
LEU
232
A
GLU
233
n
254
GLU
233
A
ALA
234
n
255
ALA
234
A
GLY
235
n
256
GLY
235
A
GLY
236
n
257
GLY
236
A
ASP
237
n
258
ASP
237
A
ASN
238
n
259
ASN
238
A
LEU
239
n
260
LEU
239
A
GLY
240
n
261
GLY
240
A
GLN
241
n
262
GLN
241
A
GLN
242
n
263
GLN
242
A
TYR
243
n
264
TYR
243
A
ASN
244
n
265
ASN
244
A
SER
245
n
266
SER
245
A
PRO
246
n
267
PRO
246
A
GLN
247
n
268
GLN
247
A
GLU
248
n
269
GLU
248
A
VAL
249
n
270
VAL
249
A
ILE
250
n
271
ILE
250
A
GLY
251
n
272
GLY
251
A
LYS
252
n
273
LYS
252
A
ARG
253
n
274
ARG
253
A
GLY
254
n
275
GLY
254
A
SER
255
n
276
SER
255
A
ASP
256
n
277
ASP
256
A
ILE
257
n
278
ILE
257
A
ILE
258
n
279
ILE
258
A
ILE
259
n
280
ILE
259
A
VAL
260
n
281
VAL
260
A
GLY
261
n
282
GLY
261
A
ARG
262
n
283
ARG
262
A
GLY
263
n
284
GLY
263
A
ILE
264
n
285
ILE
264
A
ILE
265
n
286
ILE
265
A
SER
266
n
287
SER
266
A
ALA
267
n
288
ALA
267
A
ALA
268
n
289
ALA
268
A
ASP
269
n
290
ASP
269
A
ARG
270
n
291
ARG
270
A
LEU
271
n
292
LEU
271
A
GLU
272
n
293
GLU
272
A
ALA
273
n
294
ALA
273
A
ALA
274
n
295
ALA
274
A
GLU
275
n
296
GLU
275
A
MET
276
n
297
MET
276
A
TYR
277
n
298
TYR
277
A
ARG
278
n
299
ARG
278
A
LYS
279
n
300
LYS
279
A
ALA
280
n
301
ALA
280
A
ALA
281
n
302
ALA
281
A
TRP
282
n
303
TRP
282
A
GLU
283
n
304
GLU
283
A
ALA
284
n
305
ALA
284
A
TYR
285
n
306
TYR
285
A
LEU
286
n
307
LEU
286
A
SER
287
n
308
SER
287
A
ARG
288
n
309
ARG
288
A
LEU
289
n
310
LEU
289
A
GLY
290
n
311
GLY
290
A
n
312
291
A
n
1
-20
B
n
2
-19
B
n
3
-18
B
n
4
-17
B
n
5
-16
B
n
6
-15
B
n
7
-14
B
n
8
-13
B
n
9
-12
B
n
10
-11
B
n
11
-10
B
n
12
-9
B
n
13
-8
B
n
14
-7
B
n
15
-6
B
n
16
-5
B
n
17
-4
B
n
18
-3
B
n
19
-2
B
n
20
-1
B
n
21
0
B
n
22
1
B
n
23
2
B
n
24
3
B
n
25
4
B
n
26
5
B
n
27
6
B
n
28
7
B
n
29
8
B
n
30
9
B
n
31
10
B
n
32
11
B
n
33
12
B
n
34
13
B
n
35
14
B
n
36
15
B
n
37
16
B
n
38
17
B
n
39
18
B
n
40
19
B
n
41
20
B
n
42
21
B
n
43
22
B
n
44
23
B
n
45
24
B
n
46
25
B
n
47
26
B
n
48
27
B
n
49
28
B
n
50
29
B
n
51
30
B
n
52
31
B
n
53
32
B
n
54
33
B
n
55
34
B
GLU
35
n
56
GLU
35
B
LEU
36
n
57
LEU
36
B
SER
37
n
58
SER
37
B
PHE
38
n
59
PHE
38
B
GLY
39
n
60
GLY
39
B
ALA
40
n
61
ALA
40
B
ARG
41
n
62
ARG
41
B
ALA
42
n
63
ALA
42
B
GLU
43
n
64
GLU
43
B
LEU
44
n
65
LEU
44
B
PRO
45
n
66
PRO
45
B
ARG
46
n
67
ARG
46
B
ILE
47
n
68
ILE
47
B
HIS
48
n
69
HIS
48
B
PRO
49
n
70
PRO
49
B
VAL
50
n
71
VAL
50
B
ALA
51
n
72
ALA
51
B
SER
52
n
73
SER
52
B
LYS
53
n
74
LYS
53
B
LEU
54
n
75
LEU
54
B
LEU
55
n
76
LEU
55
B
ARG
56
n
77
ARG
56
B
LEU
57
n
78
LEU
57
B
MET
58
n
79
MET
58
B
GLN
59
n
80
GLN
59
B
LYS
60
n
81
LYS
60
B
LYS
61
n
82
LYS
61
B
GLU
62
n
83
GLU
62
B
THR
63
n
84
THR
63
B
ASN
64
n
85
ASN
64
B
LEU
65
n
86
LEU
65
B
CYS
66
n
87
CYS
66
B
LEU
67
n
88
LEU
67
B
SER
68
n
89
SER
68
B
ALA
69
n
90
ALA
69
B
ASP
70
n
91
ASP
70
B
VAL
71
n
92
VAL
71
B
SER
72
n
93
SER
72
B
LEU
73
n
94
LEU
73
B
ALA
74
n
95
ALA
74
B
ARG
75
n
96
ARG
75
B
GLU
76
n
97
GLU
76
B
LEU
77
n
98
LEU
77
B
LEU
78
n
99
LEU
78
B
GLN
79
n
100
GLN
79
B
LEU
80
n
101
LEU
80
B
ALA
81
n
102
ALA
81
B
ASP
82
n
103
ASP
82
B
ALA
83
n
104
ALA
83
B
LEU
84
n
105
LEU
84
B
GLY
85
n
106
GLY
85
B
PRO
86
n
107
PRO
86
B
SER
87
n
108
SER
87
B
ILE
88
n
109
ILE
88
B
CYS
89
n
110
CYS
89
B
MET
90
n
111
MET
90
B
LEU
91
n
112
LEU
91
B
LYS
92
n
113
LYS
92
B
THR
93
n
114
THR
93
B
HIS
94
n
115
HIS
94
B
VAL
95
n
116
VAL
95
B
ASP
96
n
117
ASP
96
B
ILE
97
n
118
ILE
97
B
LEU
98
n
119
LEU
98
B
ASN
99
n
120
ASN
99
B
ASP
100
n
121
ASP
100
B
PHE
101
n
122
PHE
101
B
THR
102
n
123
THR
102
B
LEU
103
n
124
LEU
103
B
ASP
104
n
125
ASP
104
B
VAL
105
n
126
VAL
105
B
MET
106
n
127
MET
106
B
LYS
107
n
128
LYS
107
B
GLU
108
n
129
GLU
108
B
LEU
109
n
130
LEU
109
B
ILE
110
n
131
ILE
110
B
THR
111
n
132
THR
111
B
LEU
112
n
133
LEU
112
B
ALA
113
n
134
ALA
113
B
LYS
114
n
135
LYS
114
B
CYS
115
n
136
CYS
115
B
HIS
116
n
137
HIS
116
B
GLU
117
n
138
GLU
117
B
PHE
118
n
139
PHE
118
B
LEU
119
n
140
LEU
119
B
ILE
120
n
141
ILE
120
B
PHE
121
n
142
PHE
121
B
GLU
122
n
143
GLU
122
B
ASN
123
n
144
ASP
123
B
ARG
124
n
145
ARG
124
B
LYS
125
n
146
LYS
125
B
PHE
126
n
147
PHE
126
B
ALA
127
n
148
ALA
127
B
ASP
128
n
149
ASP
128
B
ILE
129
n
150
ILE
129
B
GLY
130
n
151
GLY
130
B
ASN
131
n
152
ASN
131
B
THR
132
n
153
THR
132
B
VAL
133
n
154
VAL
133
B
LYS
134
n
155
LYS
134
B
LYS
135
n
156
LYS
135
B
GLN
136
n
157
GLN
136
B
TYR
137
n
158
TYR
137
B
GLU
138
n
159
GLU
138
B
GLY
139
n
160
GLY
139
B
GLY
140
n
161
GLY
140
B
ILE
141
n
162
ILE
141
B
PHE
142
n
163
PHE
142
B
LYS
143
n
164
LYS
143
B
ILE
144
n
165
ILE
144
B
ALA
145
n
166
ALA
145
B
SER
146
n
167
SER
146
B
TRP
147
n
168
TRP
147
B
ALA
148
n
169
ALA
148
B
ASP
149
n
170
ASP
149
B
LEU
150
n
171
LEU
150
B
VAL
151
n
172
VAL
151
B
ASN
152
n
173
ASN
152
B
ALA
153
n
174
ALA
153
B
HIS
154
n
175
HIS
154
B
VAL
155
n
176
VAL
155
B
VAL
156
n
177
VAL
156
B
PRO
157
n
178
PRO
157
B
GLY
158
n
179
GLY
158
B
SER
159
n
180
SER
159
B
GLY
160
n
181
GLY
160
B
VAL
161
n
182
VAL
161
B
VAL
162
n
183
VAL
162
B
LYS
163
n
184
LYS
163
B
GLY
164
n
185
GLY
164
B
LEU
165
n
186
LEU
165
B
GLN
166
n
187
GLN
166
B
GLU
167
n
188
GLU
167
B
VAL
168
n
189
VAL
168
B
GLY
169
n
190
GLY
169
B
LEU
170
n
191
LEU
170
B
PRO
171
n
192
PRO
171
B
LEU
172
n
193
LEU
172
B
HIS
173
n
194
HIS
173
B
ARG
174
n
195
ARG
174
B
GLY
175
n
196
GLY
175
B
CYS
176
n
197
CYS
176
B
LEU
177
n
198
LEU
177
B
LEU
178
n
199
LEU
178
B
ILE
179
n
200
ILE
179
B
ALA
180
n
201
ALA
180
B
GLU
181
n
202
GLU
181
B
MET
182
n
203
MET
182
B
SER
183
n
204
SER
183
B
SER
184
n
205
SER
184
B
THR
185
n
206
THR
185
B
GLY
186
n
207
GLY
186
B
SER
187
n
208
SER
187
B
LEU
188
n
209
LEU
188
B
ALA
189
n
210
ALA
189
B
THR
190
n
211
THR
190
B
GLY
191
n
212
GLY
191
B
ASP
192
n
213
ASP
192
B
TYR
193
n
214
TYR
193
B
THR
194
n
215
THR
194
B
ARG
195
n
216
ARG
195
B
ALA
196
n
217
ALA
196
B
ALA
197
n
218
ALA
197
B
VAL
198
n
219
VAL
198
B
ARG
199
n
220
ARG
199
B
MET
200
n
221
MET
200
B
ALA
201
n
222
ALA
201
B
GLU
202
n
223
GLU
202
B
GLU
203
n
224
GLU
203
B
HIS
204
n
225
HIS
204
B
SER
205
n
226
SER
205
B
GLU
206
n
227
GLU
206
B
PHE
207
n
228
PHE
207
B
VAL
208
n
229
VAL
208
B
VAL
209
n
230
VAL
209
B
GLY
210
n
231
GLY
210
B
PHE
211
n
232
PHE
211
B
ILE
212
n
233
ILE
212
B
SER
213
n
234
SER
213
B
GLY
214
n
235
GLY
214
B
SER
215
n
236
SER
215
B
ARG
216
n
237
ARG
216
B
VAL
217
n
238
VAL
217
B
SER
218
n
239
SER
218
B
MET
219
n
240
MET
219
B
LYS
220
n
241
LYS
220
B
PRO
221
n
242
PRO
221
B
GLU
222
n
243
GLU
222
B
PHE
223
n
244
PHE
223
B
LEU
224
n
245
LEU
224
B
HIS
225
n
246
HIS
225
B
LEU
226
n
247
LEU
226
B
THR
227
n
248
THR
227
B
PRO
228
n
249
PRO
228
B
GLY
229
n
250
GLY
229
B
VAL
230
n
251
VAL
230
B
GLN
231
n
252
GLN
231
B
LEU
232
n
253
LEU
232
B
GLU
233
n
254
GLU
233
B
ALA
234
n
255
ALA
234
B
GLY
235
n
256
GLY
235
B
GLY
236
n
257
GLY
236
B
ASP
237
n
258
ASP
237
B
ASN
238
n
259
ASN
238
B
LEU
239
n
260
LEU
239
B
GLY
240
n
261
GLY
240
B
GLN
241
n
262
GLN
241
B
GLN
242
n
263
GLN
242
B
TYR
243
n
264
TYR
243
B
ASN
244
n
265
ASN
244
B
SER
245
n
266
SER
245
B
PRO
246
n
267
PRO
246
B
GLN
247
n
268
GLN
247
B
GLU
248
n
269
GLU
248
B
VAL
249
n
270
VAL
249
B
ILE
250
n
271
ILE
250
B
GLY
251
n
272
GLY
251
B
LYS
252
n
273
LYS
252
B
ARG
253
n
274
ARG
253
B
GLY
254
n
275
GLY
254
B
SER
255
n
276
SER
255
B
ASP
256
n
277
ASP
256
B
ILE
257
n
278
ILE
257
B
ILE
258
n
279
ILE
258
B
ILE
259
n
280
ILE
259
B
VAL
260
n
281
VAL
260
B
GLY
261
n
282
GLY
261
B
ARG
262
n
283
ARG
262
B
GLY
263
n
284
GLY
263
B
ILE
264
n
285
ILE
264
B
ILE
265
n
286
ILE
265
B
SER
266
n
287
SER
266
B
ALA
267
n
288
ALA
267
B
ALA
268
n
289
ALA
268
B
ASP
269
n
290
ASP
269
B
ARG
270
n
291
ARG
270
B
LEU
271
n
292
LEU
271
B
GLU
272
n
293
GLU
272
B
ALA
273
n
294
ALA
273
B
ALA
274
n
295
ALA
274
B
GLU
275
n
296
GLU
275
B
MET
276
n
297
MET
276
B
TYR
277
n
298
TYR
277
B
ARG
278
n
299
ARG
278
B
LYS
279
n
300
LYS
279
B
ALA
280
n
301
ALA
280
B
ALA
281
n
302
ALA
281
B
TRP
282
n
303
TRP
282
B
GLU
283
n
304
GLU
283
B
ALA
284
n
305
ALA
284
B
TYR
285
n
306
TYR
285
B
LEU
286
n
307
LEU
286
B
SER
287
n
308
SER
287
B
ARG
288
n
309
ARG
288
B
LEU
289
n
310
LEU
289
B
GLY
290
n
311
GLY
290
B
n
312
291
B
author_and_software_defined_assembly
PISA
2
dimeric
4250
-51
18340
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
67
A
N
LEU
88
A
O
LYS
92
A
O
LYS
113
A
N
LEU
91
A
N
LEU
112
A
O
PHE
121
A
O
PHE
142
A
N
PHE
126
A
N
PHE
147
A
O
HIS
154
A
O
HIS
175
A
N
ALA
153
A
N
ALA
174
A
O
ILE
179
A
O
ILE
200
A
N
CYS
176
A
N
CYS
197
A
O
VAL
209
A
O
VAL
230
A
N
PHE
211
A
N
PHE
232
A
O
LEU
224
A
O
LEU
245
A
N
THR
227
A
N
THR
248
A
O
ILE
259
A
O
ILE
280
A
O
ILE
258
A
O
ILE
279
A
N
CYS
66
A
N
CYS
87
B
N
LEU
67
B
N
LEU
88
B
O
LYS
92
B
O
LYS
113
B
N
PHE
126
B
N
PHE
147
B
O
HIS
154
B
O
HIS
175
B
N
VAL
151
B
N
VAL
172
B
O
LEU
177
B
O
LEU
198
B
N
CYS
176
B
N
CYS
197
B
O
VAL
209
B
O
VAL
230
B
N
PHE
211
B
N
PHE
232
B
O
LEU
224
B
O
LEU
245
B
N
THR
227
B
N
THR
248
B
O
ILE
257
B
O
ILE
278
B
O
ILE
258
B
O
ILE
279
B
N
CYS
66
B
N
CYS
87
B
N
GLY
235
B
N
GLY
256
B
O
TYR
243
B
O
TYR
264
1
A
CA
ILE
97
A
A
CA
ILE
118
0
Y
1
A
CB
ILE
97
A
A
CB
ILE
118
0
Y
1
A
CG1
ILE
97
A
A
CG1
ILE
118
0
Y
1
A
CG2
ILE
97
A
A
CG2
ILE
118
0
Y
1
A
CD1
ILE
97
A
A
CD1
ILE
118
0
Y
1
A
CA
MET
106
A
A
CA
MET
127
0
Y
1
A
CB
MET
106
A
A
CB
MET
127
0
Y
1
A
CG
MET
106
A
A
CG
MET
127
0
Y
1
A
SD
MET
106
A
A
SD
MET
127
0
Y
1
A
CE
MET
106
A
A
CE
MET
127
0
Y
1
A
CA
ILE
141
A
A
CA
ILE
162
0
Y
1
A
CB
ILE
141
A
A
CB
ILE
162
0
Y
1
A
CG1
ILE
141
A
A
CG1
ILE
162
0
Y
1
A
CG2
ILE
141
A
A
CG2
ILE
162
0
Y
1
A
CD1
ILE
141
A
A
CD1
ILE
162
0
Y
1
A
CA
SER
146
A
A
CA
SER
167
0
Y
1
A
CB
SER
146
A
A
CB
SER
167
0
Y
1
A
OG
SER
146
A
A
OG
SER
167
0
Y
1
A
CA
GLU
222
A
A
CA
GLU
243
0
Y
1
A
CB
GLU
222
A
A
CB
GLU
243
0
Y
1
A
CG
GLU
222
A
A
CG
GLU
243
0
Y
1
A
CD
GLU
222
A
A
CD
GLU
243
0
Y
1
A
OE1
GLU
222
A
A
OE1
GLU
243
0
Y
1
A
OE2
GLU
222
A
A
OE2
GLU
243
0
Y
1
A
CA
LEU
224
A
A
CA
LEU
245
0
Y
1
A
CB
LEU
224
A
A
CB
LEU
245
0
Y
1
A
CG
LEU
224
A
A
CG
LEU
245
0
Y
1
A
CD1
LEU
224
A
A
CD1
LEU
245
0
Y
1
A
CD2
LEU
224
A
A
CD2
LEU
245
0
Y
1
A
CA
ARG
270
A
A
CA
ARG
291
0
Y
1
A
CB
ARG
270
A
A
CB
ARG
291
0
Y
1
A
CG
ARG
270
A
A
CG
ARG
291
0
Y
1
A
CD
ARG
270
A
A
CD
ARG
291
0
Y
1
A
NE
ARG
270
A
A
NE
ARG
291
0
Y
1
A
CZ
ARG
270
A
A
CZ
ARG
291
0
Y
1
A
NH1
ARG
270
A
A
NH1
ARG
291
0
Y
1
A
NH2
ARG
270
A
A
NH2
ARG
291
0
Y
1
A
CA
GLU
272
A
A
CA
GLU
293
0
Y
1
A
CB
GLU
272
A
A
CB
GLU
293
0
Y
1
A
CG
GLU
272
A
A
CG
GLU
293
0
Y
1
A
CD
GLU
272
A
A
CD
GLU
293
0
Y
1
A
OE1
GLU
272
A
A
OE1
GLU
293
0
Y
1
A
OE2
GLU
272
A
A
OE2
GLU
293
0
Y
1
A
CB
MET
276
A
A
CB
MET
297
0
Y
1
A
CG
MET
276
A
A
CG
MET
297
0
Y
1
A
SD
MET
276
A
A
SD
MET
297
0
Y
1
A
CE
MET
276
A
A
CE
MET
297
0
Y
1
A
CB
GLU
283
A
A
CB
GLU
304
0
Y
1
A
CG
GLU
283
A
A
CG
GLU
304
0
Y
1
A
CD
GLU
283
A
A
CD
GLU
304
0
Y
1
A
OE1
GLU
283
A
A
OE1
GLU
304
0
Y
1
A
OE2
GLU
283
A
A
OE2
GLU
304
0
Y
1
A
CA
SER
287
A
A
CA
SER
308
0
Y
1
A
CB
SER
287
A
A
CB
SER
308
0
Y
1
A
OG
SER
287
A
A
OG
SER
308
0
Y
1
B
CA
ILE
141
A
B
CA
ILE
162
0
Y
1
B
CB
ILE
141
A
B
CB
ILE
162
0
Y
1
B
CG1
ILE
141
A
B
CG1
ILE
162
0
Y
1
B
CG2
ILE
141
A
B
CG2
ILE
162
0
Y
1
B
CD1
ILE
141
A
B
CD1
ILE
162
0
Y
1
B
CA
SER
215
A
B
CA
SER
236
0
Y
1
B
CB
SER
215
A
B
CB
SER
236
0
Y
1
B
OG
SER
215
A
B
OG
SER
236
0
Y
1
B
CA
GLU
272
A
B
CA
GLU
293
0
Y
1
B
CB
GLU
272
A
B
CB
GLU
293
0
Y
1
B
CG
GLU
272
A
B
CG
GLU
293
0
Y
1
B
CD
GLU
272
A
B
CD
GLU
293
0
Y
1
B
OE1
GLU
272
A
B
OE1
GLU
293
0
Y
1
B
OE2
GLU
272
A
B
OE2
GLU
293
0
Y
1
B
CB
MET
276
A
B
CB
MET
297
0
Y
1
B
CG
MET
276
A
B
CG
MET
297
0
Y
1
B
SD
MET
276
A
B
SD
MET
297
0
Y
1
B
CE
MET
276
A
B
CE
MET
297
0
Y
1
A
MET
-20
A
MET
1
1
Y
1
A
GLY
-19
A
GLY
2
1
Y
1
A
SER
-18
A
SER
3
1
Y
1
A
SER
-17
A
SER
4
1
Y
1
A
HIS
-16
A
HIS
5
1
Y
1
A
HIS
-15
A
HIS
6
1
Y
1
A
HIS
-14
A
HIS
7
1
Y
1
A
HIS
-13
A
HIS
8
1
Y
1
A
HIS
-12
A
HIS
9
1
Y
1
A
HIS
-11
A
HIS
10
1
Y
1
A
SER
-10
A
SER
11
1
Y
1
A
SER
-9
A
SER
12
1
Y
1
A
GLY
-8
A
GLY
13
1
Y
1
A
LEU
-7
A
LEU
14
1
Y
1
A
VAL
-6
A
VAL
15
1
Y
1
A
PRO
-5
A
PRO
16
1
Y
1
A
ARG
-4
A
ARG
17
1
Y
1
A
GLY
-3
A
GLY
18
1
Y
1
A
SER
-2
A
SER
19
1
Y
1
A
HIS
-1
A
HIS
20
1
Y
1
A
MET
0
A
MET
21
1
Y
1
A
ASP
1
A
ASP
22
1
Y
1
A
ALA
2
A
ALA
23
1
Y
1
A
GLU
3
A
GLU
24
1
Y
1
A
THR
4
A
THR
25
1
Y
1
A
VAL
5
A
VAL
26
1
Y
1
A
GLY
6
A
GLY
27
1
Y
1
A
ARG
7
A
ARG
28
1
Y
1
A
VAL
8
A
VAL
29
1
Y
1
A
LYS
9
A
LYS
30
1
Y
1
A
ARG
10
A
ARG
31
1
Y
1
A
PHE
11
A
PHE
32
1
Y
1
A
ILE
12
A
ILE
33
1
Y
1
A
GLN
13
A
GLN
34
1
Y
1
A
GLU
14
A
GLU
35
1
Y
1
A
ASN
15
A
ASN
36
1
Y
1
A
VAL
16
A
VAL
37
1
Y
1
A
PHE
17
A
PHE
38
1
Y
1
A
VAL
18
A
VAL
39
1
Y
1
A
ALA
19
A
ALA
40
1
Y
1
A
ALA
20
A
ALA
41
1
Y
1
A
ASN
21
A
ASN
42
1
Y
1
A
HIS
22
A
HIS
43
1
Y
1
A
ASN
23
A
ASN
44
1
Y
1
A
GLY
24
A
GLY
45
1
Y
1
A
SER
25
A
SER
46
1
Y
1
A
PRO
26
A
PRO
47
1
Y
1
A
LEU
27
A
LEU
48
1
Y
1
A
SER
28
A
SER
49
1
Y
1
A
ILE
29
A
ILE
50
1
Y
1
A
LYS
30
A
LYS
51
1
Y
1
A
GLU
31
A
GLU
52
1
Y
1
A
ALA
32
A
ALA
53
1
Y
1
A
PRO
33
A
PRO
54
1
Y
1
A
LYS
34
A
LYS
55
1
Y
1
A
VAL
291
A
VAL
312
1
Y
1
B
MET
-20
B
MET
1
1
Y
1
B
GLY
-19
B
GLY
2
1
Y
1
B
SER
-18
B
SER
3
1
Y
1
B
SER
-17
B
SER
4
1
Y
1
B
HIS
-16
B
HIS
5
1
Y
1
B
HIS
-15
B
HIS
6
1
Y
1
B
HIS
-14
B
HIS
7
1
Y
1
B
HIS
-13
B
HIS
8
1
Y
1
B
HIS
-12
B
HIS
9
1
Y
1
B
HIS
-11
B
HIS
10
1
Y
1
B
SER
-10
B
SER
11
1
Y
1
B
SER
-9
B
SER
12
1
Y
1
B
GLY
-8
B
GLY
13
1
Y
1
B
LEU
-7
B
LEU
14
1
Y
1
B
VAL
-6
B
VAL
15
1
Y
1
B
PRO
-5
B
PRO
16
1
Y
1
B
ARG
-4
B
ARG
17
1
Y
1
B
GLY
-3
B
GLY
18
1
Y
1
B
SER
-2
B
SER
19
1
Y
1
B
HIS
-1
B
HIS
20
1
Y
1
B
MET
0
B
MET
21
1
Y
1
B
ASP
1
B
ASP
22
1
Y
1
B
ALA
2
B
ALA
23
1
Y
1
B
GLU
3
B
GLU
24
1
Y
1
B
THR
4
B
THR
25
1
Y
1
B
VAL
5
B
VAL
26
1
Y
1
B
GLY
6
B
GLY
27
1
Y
1
B
ARG
7
B
ARG
28
1
Y
1
B
VAL
8
B
VAL
29
1
Y
1
B
LYS
9
B
LYS
30
1
Y
1
B
ARG
10
B
ARG
31
1
Y
1
B
PHE
11
B
PHE
32
1
Y
1
B
ILE
12
B
ILE
33
1
Y
1
B
GLN
13
B
GLN
34
1
Y
1
B
GLU
14
B
GLU
35
1
Y
1
B
ASN
15
B
ASN
36
1
Y
1
B
VAL
16
B
VAL
37
1
Y
1
B
PHE
17
B
PHE
38
1
Y
1
B
VAL
18
B
VAL
39
1
Y
1
B
ALA
19
B
ALA
40
1
Y
1
B
ALA
20
B
ALA
41
1
Y
1
B
ASN
21
B
ASN
42
1
Y
1
B
HIS
22
B
HIS
43
1
Y
1
B
ASN
23
B
ASN
44
1
Y
1
B
GLY
24
B
GLY
45
1
Y
1
B
SER
25
B
SER
46
1
Y
1
B
PRO
26
B
PRO
47
1
Y
1
B
LEU
27
B
LEU
48
1
Y
1
B
SER
28
B
SER
49
1
Y
1
B
ILE
29
B
ILE
50
1
Y
1
B
LYS
30
B
LYS
51
1
Y
1
B
GLU
31
B
GLU
52
1
Y
1
B
ALA
32
B
ALA
53
1
Y
1
B
PRO
33
B
PRO
54
1
Y
1
B
LYS
34
B
LYS
55
1
Y
1
B
VAL
291
B
VAL
312
1
Y
1
A
A
O
NH1
ILE
ARG
265
270
1.71
B
1
B
B
OD2
NH2
ASP
ARG
192
195
1.97
1
A
A
NE2
O2
GLN
16B
241
304
2.00
B
1
A
A
OP3
O
16B
HOH
304
406
2.00
B
1
A
A
OH
OP1
TYR
16B
243
304
2.12
B
1
A
A
O
O
HOH
HOH
455
456
2.14
1
-14.41
1.60
100.20
85.79
A
A
A
CG
SD
CE
MET
MET
MET
106
106
106
B
B
B
N
1
3.93
0.50
120.30
124.23
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
124
124
124
N
1
3.73
0.50
120.30
124.03
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
270
270
270
B
B
B
N
1
14.51
2.30
115.30
129.81
A
A
A
CA
CB
CG
LEU
LEU
LEU
271
271
271
N
1
-3.55
0.50
120.30
116.75
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
288
288
288
N
1
3.26
0.50
120.30
123.56
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
288
288
288
N
1
-3.12
0.50
120.30
117.18
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
124
124
124
N
1
B
B
CB
CG1
VAL
VAL
260
260
0.137
0.021
1.524
1.661
N
1
A
GLU
117
69.04
73.60
1
A
ALA
127
-160.49
34.87
1
A
TRP
147
-142.39
-14.32
1
A
ASP
237
3.08
-134.36
1
A
ASN
238
127.03
-69.67
1
B
LEU
44
-42.46
152.25
1
B
ARG
46
-57.93
-0.26
1
B
GLU
117
64.24
76.67
1
B
ALA
127
-156.05
30.50
1
B
ASP
237
-105.45
-166.40
71.520
29.1315
5.300
1.4400
0.0000
1.8100
-1.6800
0.0000
1.5900
0.9600
0.9490
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES: REFINED INDIVIDUALLY
0.223
0.190
0.1952
1.8000
66.0800
2633
50390
5.1000
99.0200
0.2238
0.1886
1.000
0.8286
2.9680
0.0920
0.1283
0.1222
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1280
0.1220
0.8000
0.8000
1.2000
2qcm
MAXIMUM LIKELIHOOD
MASK
1.8000
66.0800
116
4084
52
0
3916
0.028
0.022
4166
2.215
2.007
5656
6.443
5.000
544
34.426
23.772
167
14.676
15.000
743
19.760
15.000
29
0.268
0.200
656
0.011
0.021
3055
1.364
1.500
2579
2.177
2.000
4139
3.667
3.000
1587
5.262
4.500
1501
0.3110
0.2740
1.8470
178
3283
3461
20
90.0600
31.727
1.540
50.0
4HIB
70712
-3.000
0.046
1
13.960
85.000
0.015
1.540
1.580
0.440
3050
2002
1
32.700
0.015
1.580
1.620
0.820
6219
2834
1
47.300
0.015
1.620
1.670
1.010
8077
3453
1
59.800
0.015
1.670
1.720
1.360
10063
4080
1
72.000
0.015
1.720
1.780
1.740
12429
4610
1
84.600
0.015
1.780
1.840
2.670
15558
4943
1
93.000
0.015
1.840
1.910
3.790
20143
5062
1
99.700
0.015
1.910
1.990
5.830
20364
4940
1
99.700
0.015
1.990
2.080
7.650
19484
4701
1
99.800
0.015
2.080
2.180
10.360
18840
4514
1
99.800
0.015
2.180
2.300
12.770
17907
4287
1
99.700
0.015
2.300
2.430
16.190
16942
4039
1
99.700
0.015
2.430
2.600
19.840
15990
3819
1
99.700
0.015
2.600
2.810
23.350
14991
3579
1
99.800
0.015
2.810
3.080
29.400
13813
3290
1
99.800
0.015
3.080
3.440
36.190
12429
2978
1
99.700
0.015
3.440
3.980
42.530
10955
2621
1
99.700
0.015
3.980
4.870
45.890
9344
2239
1
99.600
0.015
4.870
6.890
44.510
7239
1741
1
99.800
0.015
6.890
100
47.910
3904
980
1
98.400
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
Macromolecular
crystallography data collector software
Crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with CMP-N4-OH
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
A
SER
37
A
SER
58
HELX_P
A
ALA
42
A
ALA
63
1
1
6
A
HIS
48
A
HIS
69
HELX_P
A
GLU
62
A
GLU
83
1
2
15
A
LEU
73
A
LEU
94
HELX_P
A
GLY
85
A
GLY
106
1
3
13
A
PRO
86
A
PRO
107
HELX_P
A
ILE
88
A
ILE
109
5
4
3
A
HIS
94
A
HIS
115
HELX_P
A
LEU
98
A
LEU
119
5
5
5
A
THR
102
A
THR
123
HELX_P
A
GLU
117
A
GLU
138
1
6
16
A
ILE
129
A
ILE
150
HELX_P
A
GLY
139
A
GLY
160
1
7
11
A
LYS
143
A
LYS
164
HELX_P
A
TRP
147
A
TRP
168
5
8
5
A
SER
159
A
SER
180
HELX_P
A
LEU
170
A
LEU
191
1
9
12
A
THR
190
A
THR
211
HELX_P
A
HIS
204
A
HIS
225
1
10
15
A
SER
245
A
SER
266
HELX_P
A
GLY
251
A
GLY
272
1
11
7
A
GLY
261
A
GLY
282
HELX_P
A
SER
266
A
SER
287
1
12
6
A
ASP
269
A
ASP
290
HELX_P
A
GLY
290
A
GLY
311
1
13
22
B
SER
37
B
SER
58
HELX_P
B
ALA
42
B
ALA
63
1
14
6
B
HIS
48
B
HIS
69
HELX_P
B
GLU
62
B
GLU
83
1
15
15
B
LEU
73
B
LEU
94
HELX_P
B
GLY
85
B
GLY
106
1
16
13
B
PRO
86
B
PRO
107
HELX_P
B
ILE
88
B
ILE
109
5
17
3
B
HIS
94
B
HIS
115
HELX_P
B
LEU
98
B
LEU
119
5
18
5
B
THR
102
B
THR
123
HELX_P
B
GLU
117
B
GLU
138
1
19
16
B
ILE
129
B
ILE
150
HELX_P
B
GLY
139
B
GLY
160
1
20
11
B
LYS
143
B
LYS
164
HELX_P
B
TRP
147
B
TRP
168
5
21
5
B
SER
159
B
SER
180
HELX_P
B
LEU
170
B
LEU
191
1
22
12
B
GLY
191
B
GLY
212
HELX_P
B
HIS
204
B
HIS
225
1
23
14
B
SER
245
B
SER
266
HELX_P
B
GLY
251
B
GLY
272
1
24
7
B
GLY
261
B
GLY
282
HELX_P
B
SER
266
B
SER
287
1
25
6
B
ASP
269
B
ASP
290
HELX_P
B
LEU
289
B
LEU
310
1
26
21
LYASE/LYASE INHIBITOR
alpa-beta barrel, tim barrel, decarboxylase, LYASE-LYASE INHIBITOR complex
A
GLY
235
A
GLY
256
1
A
GLY
236
A
GLY
257
-10.62
UMPS_HUMAN
UNP
1
190
P11172
DAETVGRVKRFIQENVFVAANHNGSPLSIKEAPKELSFGARAELPRIHPVASKLLRLMQKKETNLCLSADVSLARELLQL
ADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSG
VVKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSMKPEFLHLTPGVQLEAGGDNLG
QQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRLGV
190
480
4HIB
1
291
P11172
A
1
22
312
190
480
4HIB
1
291
P11172
B
1
22
312
1
expression tag
MET
-20
4HIB
A
P11172
UNP
1
1
expression tag
GLY
-19
4HIB
A
P11172
UNP
2
1
expression tag
SER
-18
4HIB
A
P11172
UNP
3
1
expression tag
SER
-17
4HIB
A
P11172
UNP
4
1
expression tag
HIS
-16
4HIB
A
P11172
UNP
5
1
expression tag
HIS
-15
4HIB
A
P11172
UNP
6
1
expression tag
HIS
-14
4HIB
A
P11172
UNP
7
1
expression tag
HIS
-13
4HIB
A
P11172
UNP
8
1
expression tag
HIS
-12
4HIB
A
P11172
UNP
9
1
expression tag
HIS
-11
4HIB
A
P11172
UNP
10
1
expression tag
SER
-10
4HIB
A
P11172
UNP
11
1
expression tag
SER
-9
4HIB
A
P11172
UNP
12
1
expression tag
GLY
-8
4HIB
A
P11172
UNP
13
1
expression tag
LEU
-7
4HIB
A
P11172
UNP
14
1
expression tag
VAL
-6
4HIB
A
P11172
UNP
15
1
expression tag
PRO
-5
4HIB
A
P11172
UNP
16
1
expression tag
ARG
-4
4HIB
A
P11172
UNP
17
1
expression tag
GLY
-3
4HIB
A
P11172
UNP
18
1
expression tag
SER
-2
4HIB
A
P11172
UNP
19
1
expression tag
HIS
-1
4HIB
A
P11172
UNP
20
1
expression tag
MET
0
4HIB
A
P11172
UNP
21
2
expression tag
MET
-20
4HIB
B
P11172
UNP
1
2
expression tag
GLY
-19
4HIB
B
P11172
UNP
2
2
expression tag
SER
-18
4HIB
B
P11172
UNP
3
2
expression tag
SER
-17
4HIB
B
P11172
UNP
4
2
expression tag
HIS
-16
4HIB
B
P11172
UNP
5
2
expression tag
HIS
-15
4HIB
B
P11172
UNP
6
2
expression tag
HIS
-14
4HIB
B
P11172
UNP
7
2
expression tag
HIS
-13
4HIB
B
P11172
UNP
8
2
expression tag
HIS
-12
4HIB
B
P11172
UNP
9
2
expression tag
HIS
-11
4HIB
B
P11172
UNP
10
2
expression tag
SER
-10
4HIB
B
P11172
UNP
11
2
expression tag
SER
-9
4HIB
B
P11172
UNP
12
2
expression tag
GLY
-8
4HIB
B
P11172
UNP
13
2
expression tag
LEU
-7
4HIB
B
P11172
UNP
14
2
expression tag
VAL
-6
4HIB
B
P11172
UNP
15
2
expression tag
PRO
-5
4HIB
B
P11172
UNP
16
2
expression tag
ARG
-4
4HIB
B
P11172
UNP
17
2
expression tag
GLY
-3
4HIB
B
P11172
UNP
18
2
expression tag
SER
-2
4HIB
B
P11172
UNP
19
2
expression tag
HIS
-1
4HIB
B
P11172
UNP
20
2
expression tag
MET
0
4HIB
B
P11172
UNP
21
9
9
2
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
LEU
65
A
LEU
86
A
SER
68
A
SER
89
A
MET
90
A
MET
111
A
THR
93
A
THR
114
A
LEU
119
A
LEU
140
A
PHE
126
A
PHE
147
A
LEU
150
A
LEU
171
A
HIS
154
A
HIS
175
A
GLY
175
A
GLY
196
A
ILE
179
A
ILE
200
A
VAL
208
A
VAL
229
A
ILE
212
A
ILE
233
A
LEU
224
A
LEU
245
A
THR
227
A
THR
248
A
ILE
257
A
ILE
278
A
VAL
260
A
VAL
281
A
LEU
65
A
LEU
86
A
SER
68
A
SER
89
B
LEU
65
B
LEU
86
B
SER
68
B
SER
89
B
MET
90
B
MET
111
B
THR
93
B
THR
114
B
LEU
119
B
LEU
140
B
PHE
126
B
PHE
147
B
LEU
150
B
LEU
171
B
HIS
154
B
HIS
175
B
GLY
175
B
GLY
196
B
ILE
179
B
ILE
200
B
VAL
208
B
VAL
229
B
ILE
212
B
ILE
233
B
LEU
224
B
LEU
245
B
THR
227
B
THR
248
B
ILE
257
B
ILE
278
B
VAL
260
B
VAL
281
B
LEU
65
B
LEU
86
B
SER
68
B
SER
89
B
GLY
235
B
GLY
256
B
GLY
236
B
GLY
257
B
GLN
242
B
GLN
263
B
TYR
243
B
TYR
264
BINDING SITE FOR RESIDUE GOL A 301
A
GOL
301
Software
4
BINDING SITE FOR RESIDUE CL A 302
A
CL
302
Software
4
BINDING SITE FOR RESIDUE CL A 303
A
CL
303
Software
2
BINDING SITE FOR RESIDUE 16B A 304
A
16B
304
Software
19
BINDING SITE FOR RESIDUE 16B B 301
B
16B
301
Software
21
A
GLU
76
A
GLU
97
4
1_555
A
GLN
79
A
GLN
100
4
1_555
A
LEU
80
A
LEU
101
4
1_555
A
ARG
270
A
ARG
291
4
1_555
A
SER
205
A
SER
226
4
1_555
A
VAL
208
A
VAL
229
4
1_555
A
HOH
465
H
HOH
4
1_555
A
HOH
466
H
HOH
4
1_555
A
LYS
163
A
LYS
184
2
1_555
B
GLY
240
B
GLY
261
2
1_555
A
SER
68
A
SER
89
19
1_555
A
ASP
70
A
ASP
91
19
1_555
A
LYS
92
A
LYS
113
19
1_555
A
HIS
94
A
HIS
115
19
1_555
A
ASP
123
A
ASP
144
19
1_555
A
LYS
125
A
LYS
146
19
1_555
A
MET
182
A
MET
203
19
1_555
A
SER
183
A
SER
204
19
1_555
A
ILE
212
A
ILE
233
19
1_555
A
PRO
228
A
PRO
249
19
1_555
A
GLN
241
A
GLN
262
19
1_555
A
TYR
243
A
TYR
264
19
1_555
A
GLY
261
A
GLY
282
19
1_555
A
ARG
262
A
ARG
283
19
1_555
A
HOH
406
H
HOH
19
1_555
A
HOH
420
H
HOH
19
1_555
B
ASP
128
B
ASP
149
19
1_555
B
ILE
129
B
ILE
150
19
1_555
B
THR
132
B
THR
153
19
1_555
A
ASP
128
A
ASP
149
21
1_555
A
ILE
129
A
ILE
150
21
1_555
A
THR
132
A
THR
153
21
1_555
B
SER
68
B
SER
89
21
1_555
B
ASP
70
B
ASP
91
21
1_555
B
LYS
92
B
LYS
113
21
1_555
B
HIS
94
B
HIS
115
21
1_555
B
ASP
123
B
ASP
144
21
1_555
B
LYS
125
B
LYS
146
21
1_555
B
GLU
181
B
GLU
202
21
1_555
B
MET
182
B
MET
203
21
1_555
B
SER
183
B
SER
204
21
1_555
B
ILE
212
B
ILE
233
21
1_555
B
PRO
228
B
PRO
249
21
1_555
B
GLN
241
B
GLN
262
21
1_555
B
TYR
243
B
TYR
264
21
1_555
B
GLY
261
B
GLY
282
21
1_555
B
ARG
262
B
ARG
283
21
1_555
B
HOH
401
I
HOH
21
1_555
B
HOH
407
I
HOH
21
1_555
B
HOH
417
I
HOH
21
1_555
4
P 1 21 1