0.056208
0.000000
0.000000
0.000000
0.032355
0.000000
0.000000
0.000000
0.022626
0.000000
0.000000
0.000000
Drozdzal, P.
Gilski, M.
Kierzek, R.
Lomozik, L.
Jaskolski, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
17.791
30.907
44.196
Cl -1
35.453
CHLORIDE ION
non-polymer
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
C10 H30 N4 4
206.372
SPERMINE (FULLY PROTONATED FORM)
non-polymer
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
CL
N
2
N
O
N
3
N
P
N
4
N
O
N
5
N
O
N
6
N
O
N
7
N
C
N
8
R
C
N
9
N
O
N
10
S
C
N
11
N
O
N
12
N
C
N
13
R
C
N
14
N
N
N
15
N
C
N
16
N
O
N
17
N
N
N
18
N
C
N
19
N
N
N
20
N
C
N
21
N
C
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
O
N
37
N
P
N
38
N
O
N
39
N
O
N
40
N
O
N
41
N
C
N
42
R
C
N
43
N
O
N
44
S
C
N
45
N
O
N
46
N
C
N
47
R
C
Y
48
N
N
Y
49
N
C
Y
50
N
N
Y
51
N
C
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
N
Y
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
N
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
N
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
C
N
85
N
N
N
86
N
C
N
87
N
C
N
88
N
C
N
89
N
N
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
N
64
N
sing
Y
65
N
doub
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
69
1180
1190
10.1107/S0907444913007798
23695262
Ultrahigh-resolution crystal structures of Z-DNA in complex with Mn(2+) and Zn(2+) ions.
2013
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
39
6238
6248
High regularity of Z-DNA revealed by ultra high-resolution crystal structure at 0.55 A
2011
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
990
995
Anomalous signal of phosphorus used for phasing DNA oligomer: importance of data redundancy
2001
10.2210/pdb4hif/pdb
pdb_00004hif
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
IMAGE PLATE
2010-12-02
MAR555 FLAT PANEL
SI 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.8174
1.0
X11
EMBL/DESY, HAMBURG
0.8174
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
1810.205
DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
2
syn
polymer
65.409
ZINC ION
2
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
206.372
SPERMINE (FULLY PROTONATED FORM)
1
syn
non-polymer
18.015
water
75
nat
water
no
no
(DC)(DG)(DC)(DG)(DC)(DG)
CGCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
1
1.53
19.80
6
A 1.5 MM DNA WATER SOLUTION MIXED 1:1 V/V WITH 10% MPD, 12 MM SPERMINE TETRA-HCL,12 MM NACL, 80 MM KCL AND EQUILIBRATED AGAINST 35% MPD, PH 6. VAPOR DIFFUSION, HANGING DROP METHOD, TEMPERATURE 292K. FOR ZN2+ SOAKING A CRYSTAL WAS PLACED IN 0.002 ML OF THE RESERVOIR SOLUTION MIXED WITH 0.002 ML OF 5 MM ZNCL2 FOR ONE WEEK.
292
1.014
1
19
A
1
B
12
0.616
A_DC1:DG12_B
1
4.461
-0.306
0.049
-0.151
-2.983
1
19
A
2
B
11
1.804
A_DG2:DC11_B
2
-4.493
0.319
0.007
-0.112
10.879
1
19
A
3
B
10
1.299
A_DC3:DG10_B
3
-7.718
-0.225
-0.074
-0.137
-9.983
1
19
A
4
B
9
1.505
A_DG4:DC9_B
4
-4.674
0.268
0.068
-0.113
2.410
1
19
A
5
B
8
2.510
A_DC5:DG8_B
5
0.399
-0.142
0.018
-0.123
-1.486
1
19
A
6
B
7
2.242
A_DG6:DC7_B
6
5.948
0.188
0.067
-0.179
3.926
-12.646
A
A
1
2
5.759
B
B
12
11
3.555
-1.257
-0.422
5.629
AA_DC1DG2:DC11DG12_BB
1
-2.672
-12.241
-12.298
-23.850
-5.538
3.181
-50.405
A
A
2
3
3.194
B
B
11
10
3.241
-2.719
-0.176
-1.070
AA_DG2DC3:DG10DC11_BB
2
-0.628
-0.738
-50.333
1.446
-0.251
6.563
-6.058
A
A
3
4
63.773
B
B
10
9
4.029
-5.434
-0.133
5.329
AA_DC3DG4:DC9DG10_BB
3
0.101
1.186
-2.678
11.885
-0.104
3.164
-52.369
A
A
4
5
2.678
B
B
9
8
3.204
-2.362
0.045
-0.863
AA_DG4DC5:DG8DC9_BB
4
0.749
0.849
-52.314
1.129
0.099
3.710
-9.914
A
A
5
6
2.792
B
B
8
7
3.555
-0.478
0.009
5.320
AA_DC5DG6:DC7DG8_BB
5
2.276
13.290
-9.639
-29.758
4.936
diffrn_detector
pdbx_unobs_or_zero_occ_atoms
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_initial_refinement_model
pdbx_struct_conn_angle
pdbx_unobs_or_zero_occ_atoms
struct_conn
struct_site
repository
Initial release
Advisory
Data collection
Advisory
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-06-05
1
1
2017-09-27
1
2
2023-09-20
_diffrn_detector.detector
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-10-11
REL
REL
ZN
ZINC ION
CL
CHLORIDE ION
SPK
SPERMINE (FULLY PROTONATED FORM)
HOH
water
Synthetic construct
32630
synthetic construct
sample
1I0T
PDB
experimental model
ZN
14
2
ZN
ZN
101
A
ZN
13
2
ZN
ZN
101
B
CL
15
3
CL
CL
102
B
SPK
16
4
SPK
SPK
103
B
HOH
21
5
HOH
HOH
201
A
HOH
24
5
HOH
HOH
202
A
HOH
25
5
HOH
HOH
203
A
HOH
27
5
HOH
HOH
204
A
HOH
28
5
HOH
HOH
205
A
HOH
30
5
HOH
HOH
206
A
HOH
32
5
HOH
HOH
207
A
HOH
33
5
HOH
HOH
208
A
HOH
35
5
HOH
HOH
209
A
HOH
42
5
HOH
HOH
210
A
HOH
44
5
HOH
HOH
211
A
HOH
45
5
HOH
HOH
212
A
HOH
46
5
HOH
HOH
213
A
HOH
47
5
HOH
HOH
214
A
HOH
48
5
HOH
HOH
215
A
HOH
50
5
HOH
HOH
216
A
HOH
52
5
HOH
HOH
217
A
HOH
53
5
HOH
HOH
218
A
HOH
54
5
HOH
HOH
219
A
HOH
59
5
HOH
HOH
220
A
HOH
60
5
HOH
HOH
221
A
HOH
61
5
HOH
HOH
222
A
HOH
68
5
HOH
HOH
223
A
HOH
69
5
HOH
HOH
224
A
HOH
70
5
HOH
HOH
225
A
HOH
71
5
HOH
HOH
226
A
HOH
72
5
HOH
HOH
227
A
HOH
73
5
HOH
HOH
228
A
HOH
74
5
HOH
HOH
229
A
HOH
76
5
HOH
HOH
230
A
HOH
79
5
HOH
HOH
231
A
HOH
80
5
HOH
HOH
232
A
HOH
81
5
HOH
HOH
233
A
HOH
82
5
HOH
HOH
234
A
HOH
83
5
HOH
HOH
235
A
HOH
87
5
HOH
HOH
236
A
HOH
17
5
HOH
HOH
201
B
HOH
18
5
HOH
HOH
202
B
HOH
19
5
HOH
HOH
203
B
HOH
20
5
HOH
HOH
204
B
HOH
22
5
HOH
HOH
205
B
HOH
23
5
HOH
HOH
206
B
HOH
26
5
HOH
HOH
207
B
HOH
29
5
HOH
HOH
208
B
HOH
31
5
HOH
HOH
209
B
HOH
34
5
HOH
HOH
210
B
HOH
36
5
HOH
HOH
211
B
HOH
37
5
HOH
HOH
212
B
HOH
38
5
HOH
HOH
213
B
HOH
39
5
HOH
HOH
214
B
HOH
40
5
HOH
HOH
215
B
HOH
41
5
HOH
HOH
216
B
HOH
43
5
HOH
HOH
217
B
HOH
49
5
HOH
HOH
218
B
HOH
51
5
HOH
HOH
219
B
HOH
55
5
HOH
HOH
220
B
HOH
56
5
HOH
HOH
221
B
HOH
57
5
HOH
HOH
222
B
HOH
58
5
HOH
HOH
223
B
HOH
62
5
HOH
HOH
224
B
HOH
63
5
HOH
HOH
225
B
HOH
64
5
HOH
HOH
226
B
HOH
65
5
HOH
HOH
227
B
HOH
66
5
HOH
HOH
228
B
HOH
67
5
HOH
HOH
229
B
HOH
75
5
HOH
HOH
230
B
HOH
77
5
HOH
HOH
231
B
HOH
78
5
HOH
HOH
232
B
HOH
84
5
HOH
HOH
233
B
HOH
85
5
HOH
HOH
234
B
HOH
86
5
HOH
HOH
235
B
HOH
88
5
HOH
HOH
236
B
HOH
89
5
HOH
HOH
237
B
HOH
90
5
HOH
HOH
238
B
HOH
91
5
HOH
HOH
239
B
DC
1
n
1
DC
1
A
DG
2
n
2
DG
2
A
DC
3
n
3
DC
3
A
DG
4
n
4
DG
4
A
DC
5
n
5
DC
5
A
DG
6
n
6
DG
6
A
DC
7
n
1
DC
7
B
DG
8
n
2
DG
8
B
DC
9
n
3
DC
9
B
DG
10
n
4
DG
10
B
DC
11
n
5
DC
11
B
DG
12
n
6
DG
12
B
0.083
0.092
0.083
0.092
0.104
0.113
850
1004
2.73
2.75
31130
author_and_software_defined_assembly
PISA
2
dimeric
630
-5
2340
A
DG
6
A
N7
DG
6
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
201
G
O
HOH
1_555
90.2
A
DG
6
A
N7
DG
6
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
205
G
O
HOH
1_555
92.9
A
HOH
201
G
O
HOH
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
205
G
O
HOH
1_555
87.1
A
DG
6
A
N7
DG
6
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
210
G
O
HOH
1_555
92.2
A
HOH
201
G
O
HOH
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
210
G
O
HOH
1_555
177.5
A
HOH
205
G
O
HOH
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
210
G
O
HOH
1_555
93.3
A
DG
6
A
N7
DG
6
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
234
G
O
HOH
1_555
86.2
A
HOH
201
G
O
HOH
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
234
G
O
HOH
1_555
91.3
A
HOH
205
G
O
HOH
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
234
G
O
HOH
1_555
178.1
A
HOH
210
G
O
HOH
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
234
G
O
HOH
1_555
88.4
A
DG
6
A
N7
DG
6
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
235
G
O
HOH
1_555
176.3
A
HOH
201
G
O
HOH
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
235
G
O
HOH
1_555
88.2
A
HOH
205
G
O
HOH
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
235
G
O
HOH
1_555
90.4
A
HOH
210
G
O
HOH
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
235
G
O
HOH
1_555
89.3
A
HOH
234
G
O
HOH
1_555
A
ZN
101
C
ZN
ZN
1_555
A
HOH
235
G
O
HOH
1_555
90.5
B
DG
10
B
N7
DG
4
1_555
B
ZN
101
D
ZN
ZN
1_555
B
HOH
233
H
O
HOH
1_555
111.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
C8
SPK
103
F
C8
SPK
0
N
1
A
A
N7
O
DG
HOH
4
232
2.16
1
-9.17
1.20
119.70
110.53
A
A
A
C3'
O3'
P
DC
DC
DG
1
1
2
B
B
Y
1
15.79
1.10
110.50
126.29
A
A
A
O3'
P
OP1
DC
DG
DG
1
2
2
B
B
B
Y
1
-15.14
0.80
109.40
94.26
A
A
A
O5'
C5'
C4'
DG
DG
DG
2
2
2
B
N
1
4.00
0.60
106.00
110.00
A
A
A
O4'
C4'
C3'
DC
DC
DC
3
3
3
A
N
1
11.63
1.20
115.70
127.33
A
A
A
C5'
C4'
C3'
DC
DC
DC
3
3
3
B
N
1
-7.61
0.80
102.40
94.79
A
A
A
C3'
C2'
C1'
DC
DC
DC
3
3
3
B
N
1
-7.28
0.80
109.40
102.12
A
A
A
O5'
C5'
C4'
DG
DG
DG
4
4
4
A
N
1
18.42
1.20
115.70
134.12
B
B
B
C5'
C4'
C3'
DG
DG
DG
12
12
12
A
N
1
13.44
2.00
112.30
125.74
B
B
B
C4'
C3'
O3'
DG
DG
DG
12
12
12
A
A
N
1
A
A
N7
C8
DG
DG
2
2
-0.040
0.006
1.305
1.265
N
1
A
A
N7
C8
DG
DG
6
6
0.036
0.006
1.305
1.341
N
1
B
B
C3'
C2'
DG
DG
12
12
-0.065
0.008
1.516
1.451
B
N
THE REFINEMENT WAS CARRIED OUT AGAINST SEPARATE BIJVOET PAIRS. ANISOTROPIC ADPS. ANISOTROPIC REFINEMENT REDUCED FREE R-FACTOR FROM 0.1562 TO 0.1235. HYDROGEN ATOMS WERE ADDED AT RIDING POSITIONS. THE FINAL REFINEMENT WAS CALCULATED USING WEIGHTED FULL MATRIX LEAST-SQUARES PROCEDURE.
0.113
0.092
0.092
0.85
17.976
3228
1004
36512
709
2.75
87.9
RANDOM
1
FREE R
MOLECULAR REPLACEMENT
1I0T
CLOWNEY, GELBIN & PARKINSON
MOEWS & KRETSINGER, J.MOL.BIOL.(1975) 91, 201
6
144.60
313.39
0.85
17.976
75
332
17
240
0
0.027
0.059
0.000
0.000
0.000
0.000
0.123
0.025
0.033
0.076
8.109
0.849
17.976
4HIF
36512
-3.000
0.03600
1
20.0200
3.020
87.9
0.22200
0.85
0.90
3.110
1
1.77
63.8
data collection
MAR345dtb
phasing
PHASER
refinement
SHELXL-97
data reduction
XDS
data scaling
XDS
Ultrahigh-resolution crystal structure of Z-DNA in complex with Zn2+ ions
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
metalc
2.112
A
DG
6
A
N7
DG
6
1_555
A
ZN
101
C
ZN
ZN
1_555
metalc
2.117
A
ZN
101
C
ZN
ZN
1_555
A
HOH
201
G
O
HOH
1_555
metalc
2.097
A
ZN
101
C
ZN
ZN
1_555
A
HOH
205
G
O
HOH
1_555
metalc
2.140
A
ZN
101
C
ZN
ZN
1_555
A
HOH
210
G
O
HOH
1_555
metalc
2.110
A
ZN
101
C
ZN
ZN
1_555
A
HOH
234
G
O
HOH
1_555
metalc
2.114
A
ZN
101
C
ZN
ZN
1_555
A
HOH
235
G
O
HOH
1_555
metalc
1.991
B
DG
10
B
N7
DG
4
1_555
B
ZN
101
D
ZN
ZN
1_555
metalc
1.944
B
ZN
101
D
ZN
ZN
1_555
B
HOH
233
H
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
12
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
12
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
12
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
10
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
10
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
10
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
9
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
9
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
9
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
7
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
7
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
7
B
N4
DC
1
1_555
DNA
self-complementary DNA, DNA, Z-DNA
4HIF
PDB
1
4HIF
1
6
4HIF
1
6
4HIF
A
1
1
6
7
12
4HIF
7
12
4HIF
B
1
1
6
BINDING SITE FOR RESIDUE ZN A 101
A
ZN
101
Software
6
BINDING SITE FOR RESIDUE ZN B 101
B
ZN
101
Software
4
BINDING SITE FOR RESIDUE CL B 102
B
CL
102
Software
4
BINDING SITE FOR RESIDUE SPK B 103
B
SPK
103
Software
12
A
DG
6
A
DG
6
6
1_555
A
HOH
201
G
HOH
6
1_555
A
HOH
205
G
HOH
6
1_555
A
HOH
210
G
HOH
6
1_555
A
HOH
234
G
HOH
6
1_555
A
HOH
235
G
HOH
6
1_555
B
DG
10
B
DG
4
4
1_555
B
DG
12
B
DG
6
4
4_566
B
CL
102
E
CL
4
1_555
B
HOH
233
H
HOH
4
1_555
B
DG
8
B
DG
2
4
1_555
B
DG
10
B
DG
4
4
1_555
B
DG
12
B
DG
6
4
4_566
B
ZN
101
D
ZN
4
1_555
A
DG
2
A
DG
2
12
2_665
A
DC
3
A
DC
3
12
2_665
A
DG
4
A
DG
4
12
3_656
A
DC
5
A
DC
5
12
3_656
A
DG
6
A
DG
6
12
3_656
A
HOH
219
G
HOH
12
3_656
A
HOH
229
G
HOH
12
2_665
A
HOH
231
G
HOH
12
2_665
B
DC
9
B
DC
3
12
1_555
B
HOH
214
H
HOH
12
1_555
B
HOH
237
H
HOH
12
1_555
B
HOH
238
H
HOH
12
1_555
19
P 21 21 21