0.056395
0.000000
0.000000
0.000000
0.031811
0.000000
0.000000
0.000000
0.022761
0.000000
0.000000
0.000000
Drozdzal, P.
Gilski, M.
Kierzek, R.
Lomozik, L.
Jaskolski, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
17.732
31.436
43.935
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Mn 2
54.938
MANGANESE (II) ION
non-polymer
C10 H30 N4 4
206.372
SPERMINE (FULLY PROTONATED FORM)
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
O
N
16
N
N
N
17
N
C
N
18
N
N
N
19
N
C
N
20
N
C
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
N
Y
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
H
N
74
N
H
N
75
N
MN
N
76
N
N
N
77
N
C
N
78
N
C
N
79
N
C
N
80
N
N
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
C
N
85
N
N
N
86
N
C
N
87
N
C
N
88
N
C
N
89
N
N
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
N
64
N
sing
Y
65
N
doub
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
69
1180
1190
10.1107/S0907444913007798
23695262
Ultrahigh-resolution crystal structures of Z-DNA in complex with Mn(2+) and Zn(2+) ions.
2013
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
39
6238
6248
High regularity of Z-DNA revealed by ultra high-resolution crystal structure at 0.55 A.
2011
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
990
995
Anomalous signal of phosphorus used for phasing DNA oligomer: importance of data redundancy.
2001
10.2210/pdb4hig/pdb
pdb_00004hig
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
100
1
CCD
2009-12-04
MAR CCD 165 mm
CCD
2012-03-16
RAYONIX MX-225
SI 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
SI 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
0.8010
1.0
0.9184
1.0
X12
EMBL/DESY, HAMBURG
0.8010
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X12
14.2
BESSY
0.9184
SYNCHROTRON
BESSY BEAMLINE 14.2
1810.205
DNA (5'-D(*CP*GP*CP*GP*CP*G)-3')
2
syn
polymer
206.372
SPERMINE (FULLY PROTONATED FORM)
1
syn
non-polymer
54.938
MANGANESE (II) ION
1
syn
non-polymer
18.015
water
92
nat
water
no
no
(DC)(DG)(DC)(DG)(DC)(DG)
CGCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
2
1.59
22.70
6
1.5 MM DNA WATER SOLUTION MIXED 1:1 V/V WITH 10% MPD, 12 MM SPERMINE TETRA-HCL, 12 MM NACL, 80 MM KCL AND EQUILIBRATED AGAINST 35% MPD, PH 6. VAPOR DIFFUSION, HANGING DROP METHOD, TEMPERATURE 292K. FOR MN2+ SOAKING, A CRYSTAL WAS PLACED IN 0.002 ML OF THE RESERVOIR SOLUTION MIXED WITH 0.002 ML OF 5 MM MNCL2 FOR ONE WEEK.
292
0.652
1
19
A
1
B
12
1.004
A_DC1:DG12_B
1
-2.477
-0.251
0.253
-0.165
-7.376
1
19
A
2
B
11
1.952
A_DG2:DC11_B
2
-5.475
0.241
-0.103
-0.168
5.260
1
19
A
3
B
10
1.825
A_DC3:DG10_B
3
-4.092
-0.252
-0.040
-0.151
-8.235
1
19
A
4
B
9
2.372
A_DG4:DC9_B
4
0.677
0.199
0.058
-0.136
0.716
1
19
A
5
B
8
3.118
A_DC5:DG8_B
5
0.159
-0.119
-0.027
-0.128
3.877
1
19
A
6
B
7
2.825
A_DG6:DC7_B
6
6.111
0.321
0.230
-0.185
5.945
-6.152
A
A
1
2
37.900
B
B
12
11
3.669
-3.730
-0.026
5.226
AA_DC1DG2:DC11DG12_BB
1
1.533
15.580
-4.646
-17.767
12.471
3.083
-53.304
A
A
2
3
5.998
B
B
11
10
3.191
-5.373
-0.022
-1.004
AA_DG2DC3:DG10DC11_BB
2
0.082
0.092
-53.052
1.447
-0.020
5.984
-6.312
A
A
3
4
29.638
B
B
10
9
3.774
-3.119
-0.082
5.473
AA_DC3DG4:DC9DG10_BB
3
0.217
2.058
-5.484
-26.287
0.879
3.193
-53.773
A
A
4
5
2.093
B
B
9
8
3.219
-1.893
-0.252
-0.831
AA_DG4DC5:DG8DC9_BB
4
0.825
0.912
-53.736
1.035
-0.228
4.318
-6.858
A
A
5
6
11.616
B
B
8
7
3.406
-1.376
0.037
5.065
AA_DC5DG6:DC7DG8_BB
5
0.888
7.495
-6.660
-35.777
4.545
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-06-05
1
1
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2012-10-11
REL
REL
SPK
SPERMINE (FULLY PROTONATED FORM)
MN
MANGANESE (II) ION
HOH
water
Synthetic construct
32630
synthetic construct
sample
1I0T
PDB
experimental model
SPK
13
2
SPK
SPK
101
A
MN
14
3
MN
MN
102
A
HOH
16
4
HOH
HOH
201
A
HOH
17
4
HOH
HOH
202
A
HOH
19
4
HOH
HOH
203
A
HOH
20
4
HOH
HOH
204
A
HOH
23
4
HOH
HOH
205
A
HOH
27
4
HOH
HOH
206
A
HOH
28
4
HOH
HOH
207
A
HOH
29
4
HOH
HOH
208
A
HOH
31
4
HOH
HOH
209
A
HOH
33
4
HOH
HOH
210
A
HOH
36
4
HOH
HOH
211
A
HOH
39
4
HOH
HOH
212
A
HOH
40
4
HOH
HOH
213
A
HOH
41
4
HOH
HOH
214
A
HOH
45
4
HOH
HOH
215
A
HOH
47
4
HOH
HOH
216
A
HOH
49
4
HOH
HOH
217
A
HOH
50
4
HOH
HOH
218
A
HOH
52
4
HOH
HOH
219
A
HOH
53
4
HOH
HOH
220
A
HOH
54
4
HOH
HOH
221
A
HOH
55
4
HOH
HOH
222
A
HOH
56
4
HOH
HOH
223
A
HOH
62
4
HOH
HOH
224
A
HOH
64
4
HOH
HOH
225
A
HOH
65
4
HOH
HOH
226
A
HOH
66
4
HOH
HOH
227
A
HOH
68
4
HOH
HOH
228
A
HOH
69
4
HOH
HOH
229
A
HOH
70
4
HOH
HOH
230
A
HOH
73
4
HOH
HOH
231
A
HOH
74
4
HOH
HOH
232
A
HOH
75
4
HOH
HOH
233
A
HOH
76
4
HOH
HOH
234
A
HOH
79
4
HOH
HOH
235
A
HOH
80
4
HOH
HOH
236
A
HOH
84
4
HOH
HOH
237
A
HOH
86
4
HOH
HOH
238
A
HOH
87
4
HOH
HOH
239
A
HOH
89
4
HOH
HOH
240
A
HOH
90
4
HOH
HOH
241
A
HOH
91
4
HOH
HOH
242
A
HOH
93
4
HOH
HOH
243
A
HOH
94
4
HOH
HOH
244
A
HOH
99
4
HOH
HOH
245
A
HOH
102
4
HOH
HOH
246
A
HOH
103
4
HOH
HOH
247
A
HOH
104
4
HOH
HOH
248
A
HOH
105
4
HOH
HOH
249
A
HOH
106
4
HOH
HOH
250
A
HOH
107
4
HOH
HOH
251
A
HOH
108
4
HOH
HOH
252
A
HOH
109
4
HOH
HOH
253
A
HOH
15
4
HOH
HOH
101
B
HOH
18
4
HOH
HOH
102
B
HOH
21
4
HOH
HOH
103
B
HOH
22
4
HOH
HOH
104
B
HOH
24
4
HOH
HOH
105
B
HOH
26
4
HOH
HOH
106
B
HOH
32
4
HOH
HOH
107
B
HOH
34
4
HOH
HOH
108
B
HOH
35
4
HOH
HOH
109
B
HOH
37
4
HOH
HOH
110
B
HOH
38
4
HOH
HOH
111
B
HOH
42
4
HOH
HOH
112
B
HOH
43
4
HOH
HOH
113
B
HOH
46
4
HOH
HOH
114
B
HOH
48
4
HOH
HOH
115
B
HOH
51
4
HOH
HOH
116
B
HOH
57
4
HOH
HOH
117
B
HOH
58
4
HOH
HOH
118
B
HOH
59
4
HOH
HOH
119
B
HOH
60
4
HOH
HOH
120
B
HOH
61
4
HOH
HOH
121
B
HOH
63
4
HOH
HOH
122
B
HOH
67
4
HOH
HOH
123
B
HOH
71
4
HOH
HOH
124
B
HOH
72
4
HOH
HOH
125
B
HOH
77
4
HOH
HOH
126
B
HOH
78
4
HOH
HOH
127
B
HOH
81
4
HOH
HOH
128
B
HOH
82
4
HOH
HOH
129
B
HOH
83
4
HOH
HOH
130
B
HOH
85
4
HOH
HOH
131
B
HOH
88
4
HOH
HOH
132
B
HOH
92
4
HOH
HOH
133
B
HOH
95
4
HOH
HOH
134
B
HOH
96
4
HOH
HOH
135
B
HOH
97
4
HOH
HOH
136
B
HOH
98
4
HOH
HOH
137
B
HOH
100
4
HOH
HOH
138
B
HOH
101
4
HOH
HOH
139
B
DC
1
n
1
DC
1
A
DG
2
n
2
DG
2
A
DC
3
n
3
DC
3
A
DG
4
n
4
DG
4
A
DC
5
n
5
DC
5
A
DG
6
n
6
DG
6
A
DC
7
n
1
DC
7
B
DG
8
n
2
DG
8
B
DC
9
n
3
DC
9
B
DG
10
n
4
DG
10
B
DC
11
n
5
DC
11
B
DG
12
n
6
DG
12
B
0.071
0.071
0.071
0.071
0.079
0.081
1005
1009
2.11
2.11
47641
author_and_software_defined_assembly
PISA
2
dimeric
940
-13
2620
A
DG
6
A
N7
DG
6
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
203
A
E
O
HOH
1_555
91.6
A
DG
6
A
N7
DG
6
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
203
B
E
O
HOH
1_555
86.8
A
HOH
203
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
203
B
E
O
HOH
1_555
8.4
A
DG
6
A
N7
DG
6
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
216
A
E
O
HOH
1_555
92.1
A
HOH
203
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
216
A
E
O
HOH
1_555
96.9
A
HOH
203
B
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
216
A
E
O
HOH
1_555
103.9
A
DG
6
A
N7
DG
6
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
216
B
E
O
HOH
1_555
87.0
A
HOH
203
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
216
B
E
O
HOH
1_555
69.7
A
HOH
203
B
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
216
B
E
O
HOH
1_555
76.3
A
HOH
216
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
216
B
E
O
HOH
1_555
27.9
A
DG
6
A
N7
DG
6
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
250
B
E
O
HOH
1_555
92.5
A
HOH
203
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
250
B
E
O
HOH
1_555
148.2
A
HOH
203
B
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
250
B
E
O
HOH
1_555
155.4
A
HOH
216
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
250
B
E
O
HOH
1_555
51.5
A
HOH
216
B
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
250
B
E
O
HOH
1_555
79.1
A
DG
6
A
N7
DG
6
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
250
A
E
O
HOH
1_555
84.6
A
HOH
203
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
250
A
E
O
HOH
1_555
174.3
A
HOH
203
B
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
250
A
E
O
HOH
1_555
171.0
A
HOH
216
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
250
A
E
O
HOH
1_555
79.1
A
HOH
216
B
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
250
A
E
O
HOH
1_555
105.8
A
HOH
250
B
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
250
A
E
O
HOH
1_555
28.4
A
DG
6
A
N7
DG
6
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
251
E
O
HOH
1_555
175.9
A
HOH
203
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
251
E
O
HOH
1_555
92.4
A
HOH
203
B
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
251
E
O
HOH
1_555
97.0
A
HOH
216
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
251
E
O
HOH
1_555
88.4
A
HOH
216
B
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
251
E
O
HOH
1_555
95.4
A
HOH
250
B
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
251
E
O
HOH
1_555
84.6
A
HOH
250
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
251
E
O
HOH
1_555
91.5
A
DG
6
A
N7
DG
6
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
252
E
O
HOH
1_555
93.8
A
HOH
203
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
252
E
O
HOH
1_555
92.2
A
HOH
203
B
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
252
E
O
HOH
1_555
85.6
A
HOH
216
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
252
E
O
HOH
1_555
169.0
A
HOH
216
B
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
252
E
O
HOH
1_555
161.9
A
HOH
250
B
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
252
E
O
HOH
1_555
118.9
A
HOH
250
A
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
252
E
O
HOH
1_555
92.3
A
HOH
251
E
O
HOH
1_555
A
MN
102
D
MN
MN
1_555
A
HOH
252
E
O
HOH
1_555
85.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
THE REFINEMENT WAS CARRIED OUT AGAINST SEPARATE BIJVOET PAIRS. ANISOTROPIC ADPS. ANISOTROPIC REFINEMENT REDUCED FREE R-FACTOR FROM 0.1295 TO 0.0903. HYDROGEN ATOMS WERE ADDED AT RIDING POSITIONS. THE FINAL REFINEMENT WAS CALCULATED USING WEIGHTED FULL MATRIX LEAST-SQUARES PROCEDURE.
0.081
0.071
0.071
0.75
25.57
3409
1009
47730
1139
2.11
79.9
RANDOM
1
FREE R
MOLECULAR REPLACEMENT
1I0T
MOEWS & KRETSINGER, J.MOL.BIOL.(1975) 91, 201.
1
164.00
332.97
0.75
25.57
92
347
15
240
0
0.012
0.029
0.000
0.000
0.000
0.000
0.028
0.004
0.037
0.069
4.756
0.75
25.57
4HIG
47730
-3.000
0.05300
1
19.2800
3.280
79.9
0.03800
0.75
0.77
11.390
1
1.15
10.6
data collection
MAR345dtb
phasing
PHASER
refinement
SHELXL-97
data reduction
XDS
data scaling
XSCALE
Ultrahigh-resolution crystal structure of Z-DNA in complex with Mn2+ ion.
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
metalc
2.258
A
DG
6
A
N7
DG
6
1_555
A
MN
102
D
MN
MN
1_555
metalc
2.076
A
A
MN
102
D
MN
MN
1_555
A
HOH
203
E
O
HOH
1_555
metalc
2.310
B
A
MN
102
D
MN
MN
1_555
A
HOH
203
E
O
HOH
1_555
metalc
2.186
A
A
MN
102
D
MN
MN
1_555
A
HOH
216
E
O
HOH
1_555
metalc
2.256
B
A
MN
102
D
MN
MN
1_555
A
HOH
216
E
O
HOH
1_555
metalc
1.947
B
A
MN
102
D
MN
MN
1_555
A
HOH
250
E
O
HOH
1_555
metalc
2.207
A
A
MN
102
D
MN
MN
1_555
A
HOH
250
E
O
HOH
1_555
metalc
2.159
A
MN
102
D
MN
MN
1_555
A
HOH
251
E
O
HOH
1_555
metalc
2.138
A
MN
102
D
MN
MN
1_555
A
HOH
252
E
O
HOH
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
12
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
12
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
12
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
10
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
10
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
10
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
9
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
9
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
9
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
7
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
7
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
7
B
N4
DC
1
1_555
DNA
self-complementary DNA, Z-DNA, DNA
4HIG
PDB
1
4HIG
1
6
4HIG
1
6
4HIG
A
1
1
6
7
12
4HIG
7
12
4HIG
B
1
1
6
BINDING SITE FOR RESIDUE SPK A 101
A
SPK
101
Software
17
BINDING SITE FOR RESIDUE MN A 102
A
MN
102
Software
6
A
DG
2
A
DG
2
17
4_456
A
DG
4
A
DG
4
17
1_555
A
DG
4
A
DG
4
17
3_746
A
DC
5
A
DC
5
17
1_555
A
DG
6
A
DG
6
17
1_555
A
DG
6
A
DG
6
17
3_646
A
HOH
207
E
HOH
17
1_555
A
HOH
214
E
HOH
17
3_646
A
HOH
233
E
HOH
17
3_746
B
DC
7
B
DC
1
17
3_746
B
DG
8
B
DG
2
17
3_746
B
DC
9
B
DC
3
17
3_646
B
HOH
111
F
HOH
17
3_646
B
HOH
112
F
HOH
17
3_646
B
HOH
113
F
HOH
17
3_746
B
HOH
123
F
HOH
17
3_646
B
HOH
126
F
HOH
17
3_646
A
DG
6
A
DG
6
6
1_555
A
HOH
203
E
HOH
6
1_555
A
HOH
216
E
HOH
6
1_555
A
HOH
250
E
HOH
6
1_555
A
HOH
251
E
HOH
6
1_555
A
HOH
252
E
HOH
6
1_555
19
P 21 21 21