0.024536
0.000000
0.000000
0.000000
0.017188
0.000000
0.000000
0.000000
0.015238
0.000000
0.000000
0.000000
Dickey, T.H.
Wuttke, D.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
40.756
58.181
65.626
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
Y
136
N
N
Y
137
N
C
Y
138
N
N
Y
139
N
C
N
140
N
C
N
141
N
O
N
142
N
N
N
143
N
C
N
144
N
N
N
145
N
N
Y
146
N
C
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
O
N
162
N
P
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
C
N
167
R
C
N
168
N
O
N
169
S
C
N
170
N
O
N
171
N
C
N
172
R
C
N
173
N
N
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
O
N
179
N
C
N
180
N
C
N
181
N
C
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
O
N
205
N
N
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
O
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
N
C
Y
251
N
C
Y
252
N
N
Y
253
N
C
Y
254
N
C
Y
255
N
N
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
S
C
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
N
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
C
N
345
N
S
N
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
N
404
N
O
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
R
C
N
418
N
O
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
N
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
Y
465
N
C
Y
466
N
C
Y
467
N
C
N
468
N
O
N
469
N
O
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
N
N
482
S
C
N
483
N
C
N
484
N
O
N
485
N
C
N
486
N
C
N
487
N
C
N
488
N
O
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
Y
144
N
sing
Y
145
N
sing
Y
146
N
doub
N
147
N
sing
Y
148
N
sing
N
149
N
sing
Y
150
N
doub
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
Y
254
N
sing
Y
255
N
doub
Y
256
N
doub
N
257
N
sing
Y
258
N
sing
N
259
N
sing
Y
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
doub
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
Y
431
N
doub
Y
432
N
sing
Y
433
N
sing
N
434
N
sing
Y
435
N
doub
Y
436
N
sing
Y
437
N
sing
N
438
N
sing
Y
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
doub
N
443
N
sing
Y
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
Y
459
N
doub
Y
460
N
sing
Y
461
N
sing
N
462
N
sing
Y
463
N
doub
N
464
N
sing
Y
465
N
doub
N
466
N
sing
Y
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
doub
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
UK
Structure
STRUE6
2005
0969-2126
21
121
132
10.1016/j.str.2012.10.015
23201273
Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes.
2013
10.2210/pdb4hj7/pdb
pdb_00004hj7
100
1
IMAGE PLATE
2012-03-08
RIGAKU RAXIS IV++
osmic mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU RUH2R
17182.414
Protection of telomeres protein 1
Pot1pC, partial DNA binding domain, residues 198-339
V199D
1
man
polymer
telomeric single-stranded DNA, C6G variant
2826.857
DNA (5'-D(*GP*GP*TP*TP*AP*GP*GP*GP*T)-3')
1
syn
polymer
18.015
water
184
nat
water
no
no
MSDSFSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCR
NYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLYVQN
MSDSFSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCR
NYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLYVQN
A
polypeptide(L)
no
no
(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)
GGTTAGGGT
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Fission yeast
972h-
sample
pot1, SPAC26H5.06
284812
Schizosaccharomyces pombe
469008
Escherichia coli
BL21 (DE3)
plasmid
pTXB1
1
1.94
36.74
VAPOR DIFFUSION, HANGING DROP
7
30% PEG 6000, 0.2M lithium nitrate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
-22.037
B
4
B
5
-9.518
B_DT4:DA5_B
1
23.588
5.148
-0.811
0.380
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Database references
Refinement description
Data collection
Database references
Refinement description
1
0
2012-12-12
1
1
2013-02-27
1
2
2017-11-15
1
3
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
RCSB
Y
RCSB
2012-10-12
REL
REL
HOH
water
284812
Schizosaccharomyces pombe
sample
4HIK
PDB entry 4HIK
PDB
experimental model
HOH
1
3
HOH
HOH
201
A
HOH
2
3
HOH
HOH
202
A
HOH
3
3
HOH
HOH
203
A
HOH
4
3
HOH
HOH
204
A
HOH
5
3
HOH
HOH
205
A
HOH
6
3
HOH
HOH
206
A
HOH
7
3
HOH
HOH
207
A
HOH
8
3
HOH
HOH
208
A
HOH
9
3
HOH
HOH
209
A
HOH
11
3
HOH
HOH
210
A
HOH
12
3
HOH
HOH
211
A
HOH
13
3
HOH
HOH
212
A
HOH
14
3
HOH
HOH
213
A
HOH
15
3
HOH
HOH
214
A
HOH
16
3
HOH
HOH
215
A
HOH
17
3
HOH
HOH
216
A
HOH
18
3
HOH
HOH
217
A
HOH
20
3
HOH
HOH
218
A
HOH
21
3
HOH
HOH
219
A
HOH
22
3
HOH
HOH
220
A
HOH
23
3
HOH
HOH
221
A
HOH
24
3
HOH
HOH
222
A
HOH
25
3
HOH
HOH
223
A
HOH
28
3
HOH
HOH
224
A
HOH
29
3
HOH
HOH
225
A
HOH
32
3
HOH
HOH
226
A
HOH
33
3
HOH
HOH
227
A
HOH
34
3
HOH
HOH
228
A
HOH
35
3
HOH
HOH
229
A
HOH
36
3
HOH
HOH
230
A
HOH
37
3
HOH
HOH
231
A
HOH
40
3
HOH
HOH
232
A
HOH
41
3
HOH
HOH
233
A
HOH
42
3
HOH
HOH
234
A
HOH
43
3
HOH
HOH
235
A
HOH
44
3
HOH
HOH
236
A
HOH
46
3
HOH
HOH
237
A
HOH
47
3
HOH
HOH
238
A
HOH
49
3
HOH
HOH
239
A
HOH
50
3
HOH
HOH
240
A
HOH
51
3
HOH
HOH
241
A
HOH
52
3
HOH
HOH
242
A
HOH
53
3
HOH
HOH
243
A
HOH
54
3
HOH
HOH
244
A
HOH
55
3
HOH
HOH
245
A
HOH
56
3
HOH
HOH
246
A
HOH
57
3
HOH
HOH
247
A
HOH
58
3
HOH
HOH
248
A
HOH
59
3
HOH
HOH
249
A
HOH
60
3
HOH
HOH
250
A
HOH
61
3
HOH
HOH
251
A
HOH
62
3
HOH
HOH
252
A
HOH
63
3
HOH
HOH
253
A
HOH
66
3
HOH
HOH
254
A
HOH
67
3
HOH
HOH
255
A
HOH
69
3
HOH
HOH
256
A
HOH
71
3
HOH
HOH
257
A
HOH
72
3
HOH
HOH
258
A
HOH
73
3
HOH
HOH
259
A
HOH
75
3
HOH
HOH
260
A
HOH
76
3
HOH
HOH
261
A
HOH
77
3
HOH
HOH
262
A
HOH
78
3
HOH
HOH
263
A
HOH
79
3
HOH
HOH
264
A
HOH
80
3
HOH
HOH
265
A
HOH
81
3
HOH
HOH
266
A
HOH
82
3
HOH
HOH
267
A
HOH
83
3
HOH
HOH
268
A
HOH
84
3
HOH
HOH
269
A
HOH
85
3
HOH
HOH
270
A
HOH
86
3
HOH
HOH
271
A
HOH
87
3
HOH
HOH
272
A
HOH
88
3
HOH
HOH
273
A
HOH
89
3
HOH
HOH
274
A
HOH
91
3
HOH
HOH
275
A
HOH
93
3
HOH
HOH
276
A
HOH
94
3
HOH
HOH
277
A
HOH
95
3
HOH
HOH
278
A
HOH
96
3
HOH
HOH
279
A
HOH
97
3
HOH
HOH
280
A
HOH
98
3
HOH
HOH
281
A
HOH
99
3
HOH
HOH
282
A
HOH
100
3
HOH
HOH
283
A
HOH
101
3
HOH
HOH
284
A
HOH
102
3
HOH
HOH
285
A
HOH
103
3
HOH
HOH
286
A
HOH
105
3
HOH
HOH
287
A
HOH
106
3
HOH
HOH
288
A
HOH
107
3
HOH
HOH
289
A
HOH
108
3
HOH
HOH
290
A
HOH
109
3
HOH
HOH
291
A
HOH
110
3
HOH
HOH
292
A
HOH
111
3
HOH
HOH
293
A
HOH
112
3
HOH
HOH
294
A
HOH
113
3
HOH
HOH
295
A
HOH
114
3
HOH
HOH
296
A
HOH
115
3
HOH
HOH
297
A
HOH
117
3
HOH
HOH
298
A
HOH
120
3
HOH
HOH
299
A
HOH
122
3
HOH
HOH
300
A
HOH
123
3
HOH
HOH
301
A
HOH
124
3
HOH
HOH
302
A
HOH
126
3
HOH
HOH
303
A
HOH
127
3
HOH
HOH
304
A
HOH
128
3
HOH
HOH
305
A
HOH
130
3
HOH
HOH
306
A
HOH
131
3
HOH
HOH
307
A
HOH
133
3
HOH
HOH
308
A
HOH
134
3
HOH
HOH
309
A
HOH
135
3
HOH
HOH
310
A
HOH
136
3
HOH
HOH
311
A
HOH
137
3
HOH
HOH
312
A
HOH
138
3
HOH
HOH
313
A
HOH
139
3
HOH
HOH
314
A
HOH
140
3
HOH
HOH
315
A
HOH
141
3
HOH
HOH
316
A
HOH
143
3
HOH
HOH
317
A
HOH
144
3
HOH
HOH
318
A
HOH
145
3
HOH
HOH
319
A
HOH
146
3
HOH
HOH
320
A
HOH
147
3
HOH
HOH
321
A
HOH
149
3
HOH
HOH
322
A
HOH
150
3
HOH
HOH
323
A
HOH
151
3
HOH
HOH
324
A
HOH
152
3
HOH
HOH
325
A
HOH
153
3
HOH
HOH
326
A
HOH
154
3
HOH
HOH
327
A
HOH
155
3
HOH
HOH
328
A
HOH
156
3
HOH
HOH
329
A
HOH
157
3
HOH
HOH
330
A
HOH
158
3
HOH
HOH
331
A
HOH
159
3
HOH
HOH
332
A
HOH
160
3
HOH
HOH
333
A
HOH
161
3
HOH
HOH
334
A
HOH
163
3
HOH
HOH
335
A
HOH
164
3
HOH
HOH
336
A
HOH
165
3
HOH
HOH
337
A
HOH
166
3
HOH
HOH
338
A
HOH
168
3
HOH
HOH
339
A
HOH
169
3
HOH
HOH
340
A
HOH
170
3
HOH
HOH
341
A
HOH
171
3
HOH
HOH
342
A
HOH
172
3
HOH
HOH
343
A
HOH
173
3
HOH
HOH
344
A
HOH
174
3
HOH
HOH
345
A
HOH
175
3
HOH
HOH
346
A
HOH
176
3
HOH
HOH
347
A
HOH
177
3
HOH
HOH
348
A
HOH
179
3
HOH
HOH
349
A
HOH
180
3
HOH
HOH
350
A
HOH
181
3
HOH
HOH
351
A
HOH
182
3
HOH
HOH
352
A
HOH
184
3
HOH
HOH
353
A
HOH
10
3
HOH
HOH
101
B
HOH
19
3
HOH
HOH
102
B
HOH
26
3
HOH
HOH
103
B
HOH
27
3
HOH
HOH
104
B
HOH
30
3
HOH
HOH
105
B
HOH
31
3
HOH
HOH
106
B
HOH
38
3
HOH
HOH
107
B
HOH
39
3
HOH
HOH
108
B
HOH
45
3
HOH
HOH
109
B
HOH
48
3
HOH
HOH
110
B
HOH
64
3
HOH
HOH
111
B
HOH
65
3
HOH
HOH
112
B
HOH
68
3
HOH
HOH
113
B
HOH
70
3
HOH
HOH
114
B
HOH
74
3
HOH
HOH
115
B
HOH
90
3
HOH
HOH
116
B
HOH
92
3
HOH
HOH
117
B
HOH
104
3
HOH
HOH
118
B
HOH
116
3
HOH
HOH
119
B
HOH
118
3
HOH
HOH
120
B
HOH
119
3
HOH
HOH
121
B
HOH
121
3
HOH
HOH
122
B
HOH
125
3
HOH
HOH
123
B
HOH
129
3
HOH
HOH
124
B
HOH
132
3
HOH
HOH
125
B
HOH
142
3
HOH
HOH
126
B
HOH
148
3
HOH
HOH
127
B
HOH
162
3
HOH
HOH
128
B
HOH
167
3
HOH
HOH
129
B
HOH
178
3
HOH
HOH
130
B
HOH
183
3
HOH
HOH
131
B
n
1
1
A
n
2
2
A
n
3
3
A
SER
4
n
4
SER
4
A
PHE
5
n
5
PHE
5
A
SER
6
n
6
SER
6
A
LEU
7
n
7
LEU
7
A
LEU
8
n
8
LEU
8
A
SER
9
n
9
SER
9
A
GLN
10
n
10
GLN
10
A
ILE
11
n
11
ILE
11
A
THR
12
n
12
THR
12
A
PRO
13
n
13
PRO
13
A
HIS
14
n
14
HIS
14
A
GLN
15
n
15
GLN
15
A
ARG
16
n
16
ARG
16
A
CYS
17
n
17
CYS
17
A
SER
18
n
18
SER
18
A
PHE
19
n
19
PHE
19
A
TYR
20
n
20
TYR
20
A
ALA
21
n
21
ALA
21
A
GLN
22
n
22
GLN
22
A
VAL
23
n
23
VAL
23
A
ILE
24
n
24
ILE
24
A
LYS
25
n
25
LYS
25
A
THR
26
n
26
THR
26
A
TRP
27
n
27
TRP
27
A
TYR
28
n
28
TYR
28
A
SER
29
n
29
SER
29
A
ASP
30
n
30
ASP
30
A
LYS
31
n
31
LYS
31
A
ASN
32
n
32
ASN
32
A
PHE
33
n
33
PHE
33
A
THR
34
n
34
THR
34
A
LEU
35
n
35
LEU
35
A
TYR
36
n
36
TYR
36
A
VAL
37
n
37
VAL
37
A
THR
38
n
38
THR
38
A
ASP
39
n
39
ASP
39
A
TYR
40
n
40
TYR
40
A
THR
41
n
41
THR
41
A
GLU
42
n
42
GLU
42
A
ASN
43
n
43
ASN
43
A
GLU
44
n
44
GLU
44
A
LEU
45
n
45
LEU
45
A
PHE
46
n
46
PHE
46
A
PHE
47
n
47
PHE
47
A
PRO
48
n
48
PRO
48
A
MET
49
n
49
MET
49
A
SER
50
n
50
SER
50
A
PRO
51
n
51
PRO
51
A
TYR
52
n
52
TYR
52
A
THR
53
n
53
THR
53
A
SER
54
n
54
SER
54
A
SER
55
n
55
SER
55
A
SER
56
n
56
SER
56
A
ARG
57
n
57
ARG
57
A
TRP
58
n
58
TRP
58
A
ARG
59
n
59
ARG
59
A
GLY
60
n
60
GLY
60
A
PRO
61
n
61
PRO
61
A
PHE
62
n
62
PHE
62
A
GLY
63
n
63
GLY
63
A
ARG
64
n
64
ARG
64
A
PHE
65
n
65
PHE
65
A
SER
66
n
66
SER
66
A
ILE
67
n
67
ILE
67
A
ARG
68
n
68
ARG
68
A
CYS
69
n
69
CYS
69
A
ILE
70
n
70
ILE
70
A
LEU
71
n
71
LEU
71
A
TRP
72
n
72
TRP
72
A
ASP
73
n
73
ASP
73
A
GLU
74
n
74
GLU
74
A
HIS
75
n
75
HIS
75
A
ASP
76
n
76
ASP
76
A
PHE
77
n
77
PHE
77
A
TYR
78
n
78
TYR
78
A
CYS
79
n
79
CYS
79
A
ARG
80
n
80
ARG
80
A
ASN
81
n
81
ASN
81
A
TYR
82
n
82
TYR
82
A
ILE
83
n
83
ILE
83
A
LYS
84
n
84
LYS
84
A
GLU
85
n
85
GLU
85
A
GLY
86
n
86
GLY
86
A
ASP
87
n
87
ASP
87
A
TYR
88
n
88
TYR
88
A
VAL
89
n
89
VAL
89
A
VAL
90
n
90
VAL
90
A
MET
91
n
91
MET
91
A
LYS
92
n
92
LYS
92
A
ASN
93
n
93
ASN
93
A
VAL
94
n
94
VAL
94
A
ARG
95
n
95
ARG
95
A
THR
96
n
96
THR
96
A
LYS
97
n
97
LYS
97
A
ILE
98
n
98
ILE
98
A
ASP
99
n
99
ASP
99
A
HIS
100
n
100
HIS
100
A
LEU
101
n
101
LEU
101
A
GLY
102
n
102
GLY
102
A
TYR
103
n
103
TYR
103
A
LEU
104
n
104
LEU
104
A
GLU
105
n
105
GLU
105
A
CYS
106
n
106
CYS
106
A
ILE
107
n
107
ILE
107
A
LEU
108
n
108
LEU
108
A
HIS
109
n
109
HIS
109
A
GLY
110
n
110
GLY
110
A
ASP
111
n
111
ASP
111
A
SER
112
n
112
SER
112
A
ALA
113
n
113
ALA
113
A
LYS
114
n
114
LYS
114
A
ARG
115
n
115
ARG
115
A
TYR
116
n
116
TYR
116
A
ASN
117
n
117
ASN
117
A
MET
118
n
118
MET
118
A
SER
119
n
119
SER
119
A
ILE
120
n
120
ILE
120
A
GLU
121
n
121
GLU
121
A
LYS
122
n
122
LYS
122
A
VAL
123
n
123
VAL
123
A
ASP
124
n
124
ASP
124
A
SER
125
n
125
SER
125
A
GLU
126
n
126
GLU
126
A
GLU
127
n
127
GLU
127
A
PRO
128
n
128
PRO
128
A
GLU
129
n
129
GLU
129
A
LEU
130
n
130
LEU
130
A
ASN
131
n
131
ASN
131
A
GLU
132
n
132
GLU
132
A
ILE
133
n
133
ILE
133
A
LYS
134
n
134
LYS
134
A
SER
135
n
135
SER
135
A
ARG
136
n
136
ARG
136
A
LYS
137
n
137
LYS
137
A
ARG
138
n
138
ARG
138
A
LEU
139
n
139
LEU
139
A
TYR
140
n
140
TYR
140
A
VAL
141
n
141
VAL
141
A
n
142
142
A
n
143
143
A
G
1
n
1
DG
1
B
G
2
n
2
DG
2
B
T
3
n
3
DT
3
B
T
4
n
4
DT
4
B
A
5
n
5
DA
5
B
G
6
n
6
DG
6
B
G
7
n
7
DG
7
B
G
8
n
8
DG
8
B
T
9
n
9
DT
9
B
author_and_software_defined_assembly
PISA
2
dimeric
2160
-7
8720
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
123
A
O
VAL
123
A
N
TYR
88
A
N
TYR
88
A
N
LYS
97
A
N
LYS
97
A
O
GLU
105
A
O
GLU
105
A
O
LEU
108
A
O
LEU
108
A
N
ILE
70
A
N
ILE
70
A
O
CYS
69
A
O
CYS
69
A
N
LEU
35
A
N
LEU
35
A
O
THR
34
A
O
THR
34
A
N
TRP
27
A
N
TRP
27
A
N
ALA
21
A
N
ALA
21
A
O
VAL
89
A
O
VAL
89
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
ASP
3
A
ASP
3
1
Y
1
A
GLN
142
A
GLN
142
1
Y
1
A
ASN
143
A
ASN
143
1
Y
1
A
A
NZ
O
LYS
HOH
122
342
1.91
1
B
B
O
O
HOH
HOH
115
131
2.01
1
A
A
O
O
HOH
HOH
328
341
2.04
1
1.97
0.30
108.30
110.27
B
B
B
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
A
ASP
73
58.46
-129.93
1
A
TYR
82
-135.20
-57.15
1
A
ASP
111
39.06
58.56
59.530
23.3169
9.800
-0.7795
-0.0000
-0.0000
2.0290
0.0000
-1.2495
0.2069
0.1737
0.1769
0.1769
1.7830
17.5120
1527
15326
15243
10.0200
98.7500
1.000
0.400
0.1900
random
1
0.000
MOLECULAR REPLACEMENT
17.6300
0.9000
1.1100
PDB entry 4HIK
Engh & Huber
FLAT BULK SOLVENT MODEL
35.2960
0.3680
1.7830
17.5120
184
1541
0
188
1169
0.007
1417
1.144
1956
0.077
202
0.005
215
16.980
536
0.2705
0.2314
1.8402
129
1130
1259
11
92.0000
0.2346
0.1934
1.9059
135
1218
1353
11
98.0000
0.2662
0.1758
1.9821
135
1224
1359
11
99.0000
0.2406
0.1698
2.0722
137
1237
1374
11
100.0000
0.1938
0.1669
2.1813
138
1249
1387
11
100.0000
0.2011
0.1716
2.3177
139
1242
1381
11
100.0000
0.2239
0.1768
2.4961
139
1251
1390
11
100.0000
0.2106
0.1824
2.7465
142
1274
1416
11
100.0000
0.1964
0.1704
3.1419
141
1263
1404
11
100.0000
0.2035
0.1564
3.9510
141
1281
1422
11
100.0000
0.1820
0.1788
17.5129
151
1347
1498
11
99.0000
1.7830
50.000
4HJ7
15437
15354
-3
-3
0.036
1.031
1
18.000
3.500
99.500
0.192
1.790
1.850
1492
0.746
1
3.400
99.500
0.131
1.850
1.930
1514
0.730
1
3.400
99.700
0.097
1.930
2.020
1515
0.907
1
3.400
99.700
0.076
2.020
2.120
1503
0.995
1
3.500
99.900
0.063
2.120
2.260
1530
1.051
1
3.500
99.900
0.054
2.260
2.430
1527
1.104
1
3.500
100.000
0.045
2.430
2.670
1527
1.097
1
3.500
100.000
0.035
2.670
3.060
1549
1.150
1
3.500
99.800
0.028
3.060
3.860
1574
1.237
1
3.500
99.600
0.024
3.860
50.000
1623
1.247
1
3.400
97.100
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7_650
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHENIX
1.7_650
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTTAGGGT)
1
N
N
2
N
N
3
N
N
3
N
N
A
LEU
7
A
LEU
7
HELX_P
A
ILE
11
A
ILE
11
5
1
5
A
ASP
73
A
ASP
73
HELX_P
A
ARG
80
A
ARG
80
1
2
8
A
ALA
113
A
ALA
113
HELX_P
A
ASN
117
A
ASN
117
5
3
5
A
GLU
127
A
GLU
127
HELX_P
A
GLU
129
A
GLU
129
5
4
3
A
LEU
130
A
LEU
130
HELX_P
A
ARG
138
A
ARG
138
1
5
9
A
LEU
139
A
LEU
139
HELX_P
A
VAL
141
A
VAL
141
5
6
3
hydrog
DT-DA PAIR
B
DT
4
B
O2
DT
4
1_555
B
DA
5
B
N6
DA
5
1_555
DNA BINDING PROTEIN
specificity, plasticity, promiscuity, OB-fold, ssDNA-binding, single-stranded telomeric DNA, DNA BINDING PROTEIN
A
GLY
60
A
GLY
60
1
A
PRO
61
A
PRO
61
1.58
POT1_SCHPO
UNP
1
198
O13988
SVSFSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCRN
YIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLYVQN
4HJ7
PDB
2
4HJ7
198
339
4HJ7
2
143
O13988
A
1
2
143
1
9
4HJ7
1
9
4HJ7
B
2
1
9
1
expression tag
MET
1
4HJ7
A
O13988
UNP
1
1
VAL
engineered mutation
ASP
3
4HJ7
A
O13988
UNP
199
3
7
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
119
A
SER
119
A
VAL
123
A
VAL
123
A
TYR
88
A
TYR
88
A
ILE
98
A
ILE
98
A
LEU
104
A
LEU
104
A
LEU
108
A
LEU
108
A
ILE
67
A
ILE
67
A
LEU
71
A
LEU
71
A
PHE
33
A
PHE
33
A
THR
38
A
THR
38
A
CYS
17
A
CYS
17
A
TYR
28
A
TYR
28
A
TYR
88
A
TYR
88
A
ILE
98
A
ILE
98
19
P 21 21 21