0.022430
0.000000
0.000000
0.000000
0.017377
0.000000
0.000000
0.000000
0.015021
0.000000
0.000000
0.000000
Dickey, T.H.
Wuttke, D.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
44.584
57.548
66.575
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
Y
285
N
C
Y
286
N
N
Y
287
N
C
Y
288
N
C
Y
289
N
N
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
S
C
N
309
N
C
N
310
N
C
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
C
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
C
N
356
N
N
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
S
N
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
C
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
R
C
N
452
N
O
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
N
N
465
S
C
N
466
N
C
N
467
N
O
N
468
N
C
Y
469
N
C
Y
470
N
C
Y
471
N
C
Y
472
N
N
Y
473
N
C
Y
474
N
C
Y
475
N
C
Y
476
N
C
Y
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
N
N
492
S
C
N
493
N
C
N
494
N
O
N
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
N
502
N
O
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
N
520
N
C
N
521
N
C
N
522
N
O
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
doub
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
doub
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
Y
289
N
sing
Y
290
N
doub
Y
291
N
doub
N
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
Y
466
N
doub
Y
467
N
sing
Y
468
N
sing
N
469
N
sing
Y
470
N
doub
Y
471
N
sing
Y
472
N
sing
N
473
N
sing
Y
474
N
sing
Y
475
N
doub
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
Y
494
N
doub
Y
495
N
sing
Y
496
N
sing
N
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
UK
Structure
STRUE6
2005
0969-2126
21
121
132
10.1016/j.str.2012.10.015
23201273
Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes.
2013
10.2210/pdb4hj8/pdb
pdb_00004hj8
100
1
IMAGE PLATE
2012-03-05
RIGAKU RAXIS IV++
osmic mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU RUH2R
17182.414
Protection of telomeres protein 1
Pot1pC, partial DNA binding domain, residues 198-339
V199D
1
man
polymer
telomeric single-stranded DNA, G8C variant
2746.809
DNA (5'-D(*GP*GP*TP*TP*AP*CP*GP*CP*T)-3')
1
syn
polymer
18.015
water
125
nat
water
no
no
MSDSFSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCR
NYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLYVQN
MSDSFSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCR
NYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLYVQN
A
polypeptide(L)
no
no
(DG)(DG)(DT)(DT)(DA)(DC)(DG)(DC)(DT)
GGTTACGCT
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Fission yeast
972h-
sample
pot1, SPAC26H5.06
284812
Schizosaccharomyces pombe
469008
Escherichia coli
BL21 (DE3)
plasmid
pTXB1
1
2.14
42.60
VAPOR DIFFUSION, HANGING DROP
7
35% PEG 8000, 0.2M sodium formate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
-26.590
B
4
B
5
-4.615
B_DT4:DA5_B
1
20.441
5.479
-0.269
-0.005
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Database references
Refinement description
Data collection
Database references
Refinement description
1
0
2012-12-12
1
1
2013-02-27
1
2
2017-11-15
1
3
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
The same protein bound to a different ssDNA sequence
RCSB
Y
RCSB
2012-10-12
REL
REL
HOH
water
284812
Schizosaccharomyces pombe
sample
4HIK
PDB entry 4HIK
PDB
experimental model
HOH
2
3
HOH
HOH
201
A
HOH
3
3
HOH
HOH
202
A
HOH
4
3
HOH
HOH
203
A
HOH
6
3
HOH
HOH
204
A
HOH
7
3
HOH
HOH
205
A
HOH
8
3
HOH
HOH
206
A
HOH
9
3
HOH
HOH
207
A
HOH
10
3
HOH
HOH
208
A
HOH
11
3
HOH
HOH
209
A
HOH
12
3
HOH
HOH
210
A
HOH
14
3
HOH
HOH
211
A
HOH
15
3
HOH
HOH
212
A
HOH
16
3
HOH
HOH
213
A
HOH
17
3
HOH
HOH
214
A
HOH
18
3
HOH
HOH
215
A
HOH
19
3
HOH
HOH
216
A
HOH
20
3
HOH
HOH
217
A
HOH
21
3
HOH
HOH
218
A
HOH
22
3
HOH
HOH
219
A
HOH
25
3
HOH
HOH
220
A
HOH
26
3
HOH
HOH
221
A
HOH
27
3
HOH
HOH
222
A
HOH
28
3
HOH
HOH
223
A
HOH
29
3
HOH
HOH
224
A
HOH
30
3
HOH
HOH
225
A
HOH
31
3
HOH
HOH
226
A
HOH
32
3
HOH
HOH
227
A
HOH
33
3
HOH
HOH
228
A
HOH
36
3
HOH
HOH
229
A
HOH
38
3
HOH
HOH
230
A
HOH
39
3
HOH
HOH
231
A
HOH
40
3
HOH
HOH
232
A
HOH
41
3
HOH
HOH
233
A
HOH
42
3
HOH
HOH
234
A
HOH
43
3
HOH
HOH
235
A
HOH
44
3
HOH
HOH
236
A
HOH
46
3
HOH
HOH
237
A
HOH
47
3
HOH
HOH
238
A
HOH
48
3
HOH
HOH
239
A
HOH
49
3
HOH
HOH
240
A
HOH
50
3
HOH
HOH
241
A
HOH
51
3
HOH
HOH
242
A
HOH
52
3
HOH
HOH
243
A
HOH
53
3
HOH
HOH
244
A
HOH
54
3
HOH
HOH
245
A
HOH
55
3
HOH
HOH
246
A
HOH
56
3
HOH
HOH
247
A
HOH
57
3
HOH
HOH
248
A
HOH
59
3
HOH
HOH
249
A
HOH
61
3
HOH
HOH
250
A
HOH
62
3
HOH
HOH
251
A
HOH
63
3
HOH
HOH
252
A
HOH
64
3
HOH
HOH
253
A
HOH
66
3
HOH
HOH
254
A
HOH
67
3
HOH
HOH
255
A
HOH
68
3
HOH
HOH
256
A
HOH
69
3
HOH
HOH
257
A
HOH
70
3
HOH
HOH
258
A
HOH
71
3
HOH
HOH
259
A
HOH
72
3
HOH
HOH
260
A
HOH
73
3
HOH
HOH
261
A
HOH
74
3
HOH
HOH
262
A
HOH
75
3
HOH
HOH
263
A
HOH
78
3
HOH
HOH
264
A
HOH
79
3
HOH
HOH
265
A
HOH
80
3
HOH
HOH
266
A
HOH
81
3
HOH
HOH
267
A
HOH
82
3
HOH
HOH
268
A
HOH
83
3
HOH
HOH
269
A
HOH
84
3
HOH
HOH
270
A
HOH
85
3
HOH
HOH
271
A
HOH
86
3
HOH
HOH
272
A
HOH
87
3
HOH
HOH
273
A
HOH
88
3
HOH
HOH
274
A
HOH
90
3
HOH
HOH
275
A
HOH
91
3
HOH
HOH
276
A
HOH
92
3
HOH
HOH
277
A
HOH
96
3
HOH
HOH
278
A
HOH
97
3
HOH
HOH
279
A
HOH
98
3
HOH
HOH
280
A
HOH
100
3
HOH
HOH
281
A
HOH
101
3
HOH
HOH
282
A
HOH
102
3
HOH
HOH
283
A
HOH
103
3
HOH
HOH
284
A
HOH
108
3
HOH
HOH
285
A
HOH
110
3
HOH
HOH
286
A
HOH
111
3
HOH
HOH
287
A
HOH
114
3
HOH
HOH
288
A
HOH
116
3
HOH
HOH
289
A
HOH
117
3
HOH
HOH
290
A
HOH
118
3
HOH
HOH
291
A
HOH
119
3
HOH
HOH
292
A
HOH
120
3
HOH
HOH
293
A
HOH
121
3
HOH
HOH
294
A
HOH
122
3
HOH
HOH
295
A
HOH
123
3
HOH
HOH
296
A
HOH
124
3
HOH
HOH
297
A
HOH
125
3
HOH
HOH
298
A
HOH
1
3
HOH
HOH
101
B
HOH
5
3
HOH
HOH
102
B
HOH
13
3
HOH
HOH
103
B
HOH
23
3
HOH
HOH
104
B
HOH
24
3
HOH
HOH
105
B
HOH
34
3
HOH
HOH
106
B
HOH
35
3
HOH
HOH
107
B
HOH
37
3
HOH
HOH
108
B
HOH
45
3
HOH
HOH
109
B
HOH
58
3
HOH
HOH
110
B
HOH
60
3
HOH
HOH
111
B
HOH
65
3
HOH
HOH
112
B
HOH
76
3
HOH
HOH
113
B
HOH
77
3
HOH
HOH
114
B
HOH
89
3
HOH
HOH
115
B
HOH
93
3
HOH
HOH
116
B
HOH
94
3
HOH
HOH
117
B
HOH
95
3
HOH
HOH
118
B
HOH
99
3
HOH
HOH
119
B
HOH
104
3
HOH
HOH
120
B
HOH
105
3
HOH
HOH
121
B
HOH
106
3
HOH
HOH
122
B
HOH
107
3
HOH
HOH
123
B
HOH
109
3
HOH
HOH
124
B
HOH
112
3
HOH
HOH
125
B
HOH
113
3
HOH
HOH
126
B
HOH
115
3
HOH
HOH
127
B
n
1
1
A
n
2
2
A
n
3
3
A
SER
4
n
4
SER
4
A
PHE
5
n
5
PHE
5
A
SER
6
n
6
SER
6
A
LEU
7
n
7
LEU
7
A
LEU
8
n
8
LEU
8
A
SER
9
n
9
SER
9
A
GLN
10
n
10
GLN
10
A
ILE
11
n
11
ILE
11
A
THR
12
n
12
THR
12
A
PRO
13
n
13
PRO
13
A
HIS
14
n
14
HIS
14
A
GLN
15
n
15
GLN
15
A
ARG
16
n
16
ARG
16
A
CYS
17
n
17
CYS
17
A
SER
18
n
18
SER
18
A
PHE
19
n
19
PHE
19
A
TYR
20
n
20
TYR
20
A
ALA
21
n
21
ALA
21
A
GLN
22
n
22
GLN
22
A
VAL
23
n
23
VAL
23
A
ILE
24
n
24
ILE
24
A
LYS
25
n
25
LYS
25
A
THR
26
n
26
THR
26
A
TRP
27
n
27
TRP
27
A
TYR
28
n
28
TYR
28
A
SER
29
n
29
SER
29
A
ASP
30
n
30
ASP
30
A
LYS
31
n
31
LYS
31
A
ASN
32
n
32
ASN
32
A
PHE
33
n
33
PHE
33
A
THR
34
n
34
THR
34
A
LEU
35
n
35
LEU
35
A
TYR
36
n
36
TYR
36
A
VAL
37
n
37
VAL
37
A
THR
38
n
38
THR
38
A
ASP
39
n
39
ASP
39
A
TYR
40
n
40
TYR
40
A
THR
41
n
41
THR
41
A
GLU
42
n
42
GLU
42
A
ASN
43
n
43
ASN
43
A
GLU
44
n
44
GLU
44
A
LEU
45
n
45
LEU
45
A
PHE
46
n
46
PHE
46
A
PHE
47
n
47
PHE
47
A
PRO
48
n
48
PRO
48
A
MET
49
n
49
MET
49
A
SER
50
n
50
SER
50
A
PRO
51
n
51
PRO
51
A
TYR
52
n
52
TYR
52
A
THR
53
n
53
THR
53
A
SER
54
n
54
SER
54
A
SER
55
n
55
SER
55
A
SER
56
n
56
SER
56
A
ARG
57
n
57
ARG
57
A
TRP
58
n
58
TRP
58
A
ARG
59
n
59
ARG
59
A
GLY
60
n
60
GLY
60
A
PRO
61
n
61
PRO
61
A
PHE
62
n
62
PHE
62
A
GLY
63
n
63
GLY
63
A
ARG
64
n
64
ARG
64
A
PHE
65
n
65
PHE
65
A
SER
66
n
66
SER
66
A
ILE
67
n
67
ILE
67
A
ARG
68
n
68
ARG
68
A
CYS
69
n
69
CYS
69
A
ILE
70
n
70
ILE
70
A
LEU
71
n
71
LEU
71
A
TRP
72
n
72
TRP
72
A
ASP
73
n
73
ASP
73
A
GLU
74
n
74
GLU
74
A
HIS
75
n
75
HIS
75
A
ASP
76
n
76
ASP
76
A
PHE
77
n
77
PHE
77
A
TYR
78
n
78
TYR
78
A
CYS
79
n
79
CYS
79
A
ARG
80
n
80
ARG
80
A
ASN
81
n
81
ASN
81
A
TYR
82
n
82
TYR
82
A
ILE
83
n
83
ILE
83
A
LYS
84
n
84
LYS
84
A
GLU
85
n
85
GLU
85
A
GLY
86
n
86
GLY
86
A
ASP
87
n
87
ASP
87
A
TYR
88
n
88
TYR
88
A
VAL
89
n
89
VAL
89
A
VAL
90
n
90
VAL
90
A
MET
91
n
91
MET
91
A
LYS
92
n
92
LYS
92
A
ASN
93
n
93
ASN
93
A
VAL
94
n
94
VAL
94
A
ARG
95
n
95
ARG
95
A
THR
96
n
96
THR
96
A
LYS
97
n
97
LYS
97
A
ILE
98
n
98
ILE
98
A
ASP
99
n
99
ASP
99
A
HIS
100
n
100
HIS
100
A
LEU
101
n
101
LEU
101
A
GLY
102
n
102
GLY
102
A
TYR
103
n
103
TYR
103
A
LEU
104
n
104
LEU
104
A
GLU
105
n
105
GLU
105
A
CYS
106
n
106
CYS
106
A
ILE
107
n
107
ILE
107
A
LEU
108
n
108
LEU
108
A
HIS
109
n
109
HIS
109
A
GLY
110
n
110
GLY
110
A
ASP
111
n
111
ASP
111
A
SER
112
n
112
SER
112
A
ALA
113
n
113
ALA
113
A
LYS
114
n
114
LYS
114
A
ARG
115
n
115
ARG
115
A
TYR
116
n
116
TYR
116
A
ASN
117
n
117
ASN
117
A
MET
118
n
118
MET
118
A
SER
119
n
119
SER
119
A
ILE
120
n
120
ILE
120
A
GLU
121
n
121
GLU
121
A
LYS
122
n
122
LYS
122
A
VAL
123
n
123
VAL
123
A
ASP
124
n
124
ASP
124
A
SER
125
n
125
SER
125
A
GLU
126
n
126
GLU
126
A
GLU
127
n
127
GLU
127
A
PRO
128
n
128
PRO
128
A
GLU
129
n
129
GLU
129
A
LEU
130
n
130
LEU
130
A
ASN
131
n
131
ASN
131
A
GLU
132
n
132
GLU
132
A
ILE
133
n
133
ILE
133
A
LYS
134
n
134
LYS
134
A
SER
135
n
135
SER
135
A
ARG
136
n
136
ARG
136
A
LYS
137
n
137
LYS
137
A
ARG
138
n
138
ARG
138
A
LEU
139
n
139
LEU
139
A
TYR
140
n
140
TYR
140
A
VAL
141
n
141
VAL
141
A
n
142
142
A
n
143
143
A
G
1
n
1
DG
1
B
G
2
n
2
DG
2
B
T
3
n
3
DT
3
B
T
4
n
4
DT
4
B
A
5
n
5
DA
5
B
C
6
n
6
DC
6
B
G
7
n
7
DG
7
B
C
8
n
8
DC
8
B
T
9
n
9
DT
9
B
author_and_software_defined_assembly
PISA
2
dimeric
2060
-6
8470
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
123
A
O
VAL
123
A
N
TYR
88
A
N
TYR
88
A
N
ARG
95
A
N
ARG
95
A
O
ILE
107
A
O
ILE
107
A
O
LEU
108
A
O
LEU
108
A
N
ILE
70
A
N
ILE
70
A
O
CYS
69
A
O
CYS
69
A
N
LEU
35
A
N
LEU
35
A
O
THR
38
A
O
THR
38
A
N
GLN
22
A
N
GLN
22
A
N
PHE
19
A
N
PHE
19
A
O
MET
91
A
O
MET
91
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
ASP
3
A
ASP
3
1
Y
1
A
GLN
142
A
GLN
142
1
Y
1
A
ASN
143
A
ASN
143
1
Y
1
A
A
O
O
HOH
HOH
213
265
1.86
1
A
A
O
O
HOH
HOH
230
296
1.88
1
A
A
OD1
O
ASP
HOH
111
293
1.97
1
B
B
O
O
HOH
HOH
104
117
2.06
1
A
A
O
O
HOH
HOH
258
272
2.07
1
B
B
O2
O
DC
HOH
6
113
2.08
1
A
ASP
73
56.81
-132.27
1
A
TYR
82
-133.07
-60.24
72.230
30.0413
14.110
8.8786
-0.0000
-0.0000
-2.7538
-0.0000
-6.1248
0.2300
0.1923
0.1962
0.1962
2.0430
18.7790
1103
11245
10956
10.0700
96.6400
1.000
0.400
0.2500
random
1
0.000
MOLECULAR REPLACEMENT
22.7200
0.9000
1.1100
PDB entry 4HIK
Engh & Huber
FLAT BULK SOLVENT MODEL
43.1370
0.3960
2.0430
18.7790
125
1476
0
182
1169
0.007
1409
1.046
1942
0.071
202
0.006
215
17.849
536
0.3210
0.2570
2.1356
125
1093
1218
8
87.0000
0.2983
0.2306
2.2480
131
1176
1307
8
95.0000
0.2756
0.2231
2.3886
137
1220
1357
8
97.0000
0.2527
0.2161
2.5726
137
1216
1353
8
97.0000
0.2139
0.1971
2.8307
138
1234
1372
8
98.0000
0.2517
0.1877
3.2385
141
1275
1416
8
99.0000
0.2054
0.1691
4.0733
143
1286
1429
8
100.0000
0.1991
0.1784
18.7799
151
1353
1504
8
99.0000
2.0430
50.000
4HJ8
11338
11273
-3
-3
0.073
1.069
1
9.000
3.400
99.500
0.459
2.050
2.120
1093
0.781
1
3.200
98.900
0.369
2.120
2.210
1109
0.827
1
3.300
99.800
0.306
2.210
2.310
1110
0.892
1
3.400
99.900
0.237
2.310
2.430
1114
0.913
1
3.400
100.000
0.186
2.430
2.580
1113
0.997
1
3.500
100.000
0.145
2.580
2.780
1121
1.137
1
3.400
100.000
0.093
2.780
3.060
1125
1.264
1
3.500
100.000
0.058
3.060
3.510
1136
1.405
1
3.500
100.000
0.039
3.510
4.420
1160
1.340
1
3.400
99.800
0.029
4.420
50.000
1192
1.063
1
3.300
96.400
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.7_650
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHENIX
1.7_650
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTTACGCT)
1
N
N
2
N
N
3
N
N
3
N
N
A
LEU
7
A
LEU
7
HELX_P
A
ILE
11
A
ILE
11
5
1
5
A
TRP
72
A
TRP
72
HELX_P
A
ARG
80
A
ARG
80
1
2
9
A
GLU
127
A
GLU
127
HELX_P
A
GLU
129
A
GLU
129
5
3
3
A
LEU
130
A
LEU
130
HELX_P
A
ARG
138
A
ARG
138
1
4
9
A
LEU
139
A
LEU
139
HELX_P
A
VAL
141
A
VAL
141
5
5
3
hydrog
DT-DA PAIR
B
DT
4
B
O2
DT
4
1_555
B
DA
5
B
N6
DA
5
1_555
DNA BINDING PROTEIN
specificity, plasticity, promiscuity, OB-fold, ssDNA-binding, single-stranded telomeric DNA, DNA BINDING PROTEIN
A
GLY
60
A
GLY
60
1
A
PRO
61
A
PRO
61
0.39
POT1_SCHPO
UNP
1
198
O13988
SVSFSLLSQITPHQRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYCRN
YIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLYVQN
4HJ8
PDB
2
4HJ8
198
339
4HJ8
2
143
O13988
A
1
2
143
1
9
4HJ8
1
9
4HJ8
B
2
1
9
1
expression tag
MET
1
4HJ8
A
O13988
UNP
1
1
VAL
engineered mutation
ASP
3
4HJ8
A
O13988
UNP
199
3
7
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
119
A
SER
119
A
VAL
123
A
VAL
123
A
TYR
88
A
TYR
88
A
ILE
98
A
ILE
98
A
LEU
104
A
LEU
104
A
LEU
108
A
LEU
108
A
SER
66
A
SER
66
A
LEU
71
A
LEU
71
A
PHE
33
A
PHE
33
A
THR
38
A
THR
38
A
ARG
16
A
ARG
16
A
TYR
28
A
TYR
28
A
TYR
88
A
TYR
88
A
ILE
98
A
ILE
98
19
P 21 21 21