0.025979
0.000000
0.000000
0.000000
0.021965
0.000000
0.000000
0.000000
0.008975
0.00000
0.00000
0.00000
Langan, P.
Wan, Q.
Coates, L.
Kovalevsky, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
38.492
45.526
111.417
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H8 O7
192.124
CITRIC ACID
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C5 H10 O5
150.130
beta-D-xylopyranose
beta-D-xylose; D-xylose; xylose
D-saccharide, beta linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
O
N
84
N
C
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
N
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
N
N
135
N
C
N
136
N
C
N
137
N
O
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
Y
163
N
C
Y
164
N
N
Y
165
N
C
Y
166
N
C
Y
167
N
N
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
S
C
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
N
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
S
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
Y
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
R
C
N
330
N
O
N
331
N
C
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
N
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
O
N
413
R
C
N
414
R
C
N
415
S
C
N
416
R
C
N
417
N
C
N
418
N
O
N
419
N
O
N
420
N
O
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
Y
160
N
sing
Y
161
N
doub
Y
162
N
doub
N
163
N
sing
Y
164
N
sing
N
165
N
sing
Y
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
Y
268
N
doub
Y
269
N
sing
Y
270
N
sing
N
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
doub
N
275
N
sing
Y
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
doub
Y
342
N
sing
Y
343
N
sing
N
344
N
sing
Y
345
N
sing
Y
346
N
doub
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
70
11
23
10.1107/S1399004713023626
24419374
X-ray crystallographic studies of family 11 xylanase Michaelis and product complexes: implications for the catalytic mechanism.
2014
10.2210/pdb4hk8/pdb
pdb_00004hk8
100
1
CCD
2012-06-28
ADSC QUANTUM 315
SINGLE WAVELENGTH
x-ray
1
0.9793
1.0
19-ID
APS
0.9793
SYNCHROTRON
APS BEAMLINE 19-ID
20726.354
Endo-1,4-beta-xylanase 2
3.2.1.8
E209Q
1
man
polymer
810.704
beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
1
man
branched
92.094
GLYCEROL
5
syn
non-polymer
192.124
CITRIC ACID
1
syn
non-polymer
18.015
water
203
nat
water
Xylanase 2, 1,4-beta-D-xylan xylanohydrolase 2
no
no
TIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWSR
NPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWAQ
QGLTLGTMDYQIVAVQGYFSSGSASITVS
TIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWSR
NPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWAQ
QGLTLGTMDYQIVAVQGYFSSGSASITVS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
xyn2
51453
Trichoderma reesei
469008
Escherichia coli
BL21(DE3)
plasmid
pJexpress401
1
2.36
47.77
VAPOR DIFFUSION
7.0
0.2 M Ammonium Citrate tribasic pH7.0, 20% PEG 3350, vapor diffusion, temperature 298K
298
software
atom_site
atom_site_anisotrop
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_special_symmetry
pdbx_validate_close_contact
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Refinement description
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Derived calculations
Structure summary
1
0
2014-01-08
1
1
2014-02-12
1
2
2017-11-15
2
0
2020-07-29
2
1
2024-02-28
_software.name
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.occupancy
_atom_site.type_symbol
_atom_site_anisotrop.U[1][1]
_atom_site_anisotrop.U[1][2]
_atom_site_anisotrop.U[1][3]
_atom_site_anisotrop.U[2][2]
_atom_site_anisotrop.U[2][3]
_atom_site_anisotrop.U[3][3]
_atom_site_anisotrop.pdbx_auth_asym_id
_atom_site_anisotrop.pdbx_auth_atom_id
_atom_site_anisotrop.pdbx_auth_seq_id
_atom_site_anisotrop.pdbx_label_asym_id
_atom_site_anisotrop.pdbx_label_atom_id
_atom_site_anisotrop.type_symbol
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.auth_seq_id_2
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
A
XYP
1125
n
B
XYP
1
A
XYP
1124
n
B
XYP
2
A
XYP
1123
n
B
XYP
3
A
XYP
1122
n
B
XYP
4
A
XYP
1121
n
B
XYP
5
A
XYP
1120
n
B
XYP
6
DXylpb
b-D-xylopyranose
b-D-Xylp
Xyl
RCSB
Y
RCSB
2012-10-15
REL
REL
oligosaccharide
DXylpb1-4DXylpb1-4DXylpb1-4DXylpb1-4DXylpb1-4DXylpb1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/1,6,5/[a212h-1b_1-5]/1-1-1-1-1-1/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1
2
PDB2Glycan
1.1.0
WURCS
[][b-D-Xylp]{[(4+1)][b-D-Xylp]{[(4+1)][b-D-Xylp]{[(4+1)][b-D-Xylp]{[(4+1)][b-D-Xylp]{[(4+1)][b-D-Xylp]{}}}}}}
2
PDB-CARE
LINUCS
C1
O4
XYP
XYP
2
1
2
O1
HO4
sing
C1
O4
XYP
XYP
3
2
2
O1
HO4
sing
C1
O4
XYP
XYP
4
3
2
O1
HO4
sing
C1
O4
XYP
XYP
5
4
2
O1
HO4
sing
C1
O4
XYP
XYP
6
5
2
O1
HO4
sing
n
n
n
n
n
n
GOL
GLYCEROL
CIT
CITRIC ACID
HOH
water
GOL
1230
3
GOL
GOL
207
A
GOL
1231
3
GOL
GOL
208
A
GOL
1232
3
GOL
GOL
209
A
GOL
1233
3
GOL
GOL
210
A
GOL
1234
3
GOL
GOL
211
A
CIT
1240
4
CIT
CIT
212
A
HOH
3
5
HOH
HOH
301
A
HOH
4
5
HOH
HOH
302
A
HOH
6
5
HOH
HOH
303
A
HOH
7
5
HOH
HOH
304
A
HOH
11
5
HOH
HOH
305
A
HOH
12
5
HOH
HOH
306
A
HOH
13
5
HOH
HOH
307
A
HOH
14
5
HOH
HOH
308
A
HOH
15
5
HOH
HOH
309
A
HOH
17
5
HOH
HOH
310
A
HOH
22
5
HOH
HOH
311
A
HOH
25
5
HOH
HOH
312
A
HOH
26
5
HOH
HOH
313
A
HOH
28
5
HOH
HOH
314
A
HOH
29
5
HOH
HOH
315
A
HOH
31
5
HOH
HOH
316
A
HOH
32
5
HOH
HOH
317
A
HOH
33
5
HOH
HOH
318
A
HOH
34
5
HOH
HOH
319
A
HOH
35
5
HOH
HOH
320
A
HOH
36
5
HOH
HOH
321
A
HOH
37
5
HOH
HOH
322
A
HOH
39
5
HOH
HOH
323
A
HOH
40
5
HOH
HOH
324
A
HOH
41
5
HOH
HOH
325
A
HOH
42
5
HOH
HOH
326
A
HOH
43
5
HOH
HOH
327
A
HOH
44
5
HOH
HOH
328
A
HOH
45
5
HOH
HOH
329
A
HOH
46
5
HOH
HOH
330
A
HOH
48
5
HOH
HOH
331
A
HOH
49
5
HOH
HOH
332
A
HOH
50
5
HOH
HOH
333
A
HOH
51
5
HOH
HOH
334
A
HOH
53
5
HOH
HOH
335
A
HOH
55
5
HOH
HOH
336
A
HOH
56
5
HOH
HOH
337
A
HOH
57
5
HOH
HOH
338
A
HOH
58
5
HOH
HOH
339
A
HOH
59
5
HOH
HOH
340
A
HOH
60
5
HOH
HOH
341
A
HOH
61
5
HOH
HOH
342
A
HOH
63
5
HOH
HOH
343
A
HOH
64
5
HOH
HOH
344
A
HOH
65
5
HOH
HOH
345
A
HOH
66
5
HOH
HOH
346
A
HOH
67
5
HOH
HOH
347
A
HOH
68
5
HOH
HOH
348
A
HOH
69
5
HOH
HOH
349
A
HOH
70
5
HOH
HOH
350
A
HOH
71
5
HOH
HOH
351
A
HOH
73
5
HOH
HOH
352
A
HOH
74
5
HOH
HOH
353
A
HOH
80
5
HOH
HOH
354
A
HOH
81
5
HOH
HOH
355
A
HOH
82
5
HOH
HOH
356
A
HOH
84
5
HOH
HOH
357
A
HOH
85
5
HOH
HOH
358
A
HOH
86
5
HOH
HOH
359
A
HOH
87
5
HOH
HOH
360
A
HOH
88
5
HOH
HOH
361
A
HOH
89
5
HOH
HOH
362
A
HOH
90
5
HOH
HOH
363
A
HOH
91
5
HOH
HOH
364
A
HOH
92
5
HOH
HOH
365
A
HOH
94
5
HOH
HOH
366
A
HOH
95
5
HOH
HOH
367
A
HOH
96
5
HOH
HOH
368
A
HOH
98
5
HOH
HOH
369
A
HOH
99
5
HOH
HOH
370
A
HOH
100
5
HOH
HOH
371
A
HOH
101
5
HOH
HOH
372
A
HOH
102
5
HOH
HOH
373
A
HOH
103
5
HOH
HOH
374
A
HOH
104
5
HOH
HOH
375
A
HOH
106
5
HOH
HOH
376
A
HOH
107
5
HOH
HOH
377
A
HOH
108
5
HOH
HOH
378
A
HOH
109
5
HOH
HOH
379
A
HOH
111
5
HOH
HOH
380
A
HOH
112
5
HOH
HOH
381
A
HOH
113
5
HOH
HOH
382
A
HOH
114
5
HOH
HOH
383
A
HOH
115
5
HOH
HOH
384
A
HOH
116
5
HOH
HOH
385
A
HOH
119
5
HOH
HOH
386
A
HOH
120
5
HOH
HOH
387
A
HOH
121
5
HOH
HOH
388
A
HOH
122
5
HOH
HOH
389
A
HOH
125
5
HOH
HOH
390
A
HOH
126
5
HOH
HOH
391
A
HOH
127
5
HOH
HOH
392
A
HOH
128
5
HOH
HOH
393
A
HOH
129
5
HOH
HOH
394
A
HOH
131
5
HOH
HOH
395
A
HOH
133
5
HOH
HOH
396
A
HOH
134
5
HOH
HOH
397
A
HOH
135
5
HOH
HOH
398
A
HOH
138
5
HOH
HOH
399
A
HOH
139
5
HOH
HOH
400
A
HOH
141
5
HOH
HOH
401
A
HOH
142
5
HOH
HOH
402
A
HOH
143
5
HOH
HOH
403
A
HOH
144
5
HOH
HOH
404
A
HOH
145
5
HOH
HOH
405
A
HOH
146
5
HOH
HOH
406
A
HOH
147
5
HOH
HOH
407
A
HOH
148
5
HOH
HOH
408
A
HOH
149
5
HOH
HOH
409
A
HOH
151
5
HOH
HOH
410
A
HOH
152
5
HOH
HOH
411
A
HOH
153
5
HOH
HOH
412
A
HOH
154
5
HOH
HOH
413
A
HOH
155
5
HOH
HOH
414
A
HOH
156
5
HOH
HOH
415
A
HOH
157
5
HOH
HOH
416
A
HOH
160
5
HOH
HOH
417
A
HOH
161
5
HOH
HOH
418
A
HOH
162
5
HOH
HOH
419
A
HOH
164
5
HOH
HOH
420
A
HOH
165
5
HOH
HOH
421
A
HOH
166
5
HOH
HOH
422
A
HOH
167
5
HOH
HOH
423
A
HOH
168
5
HOH
HOH
424
A
HOH
170
5
HOH
HOH
425
A
HOH
171
5
HOH
HOH
426
A
HOH
172
5
HOH
HOH
427
A
HOH
173
5
HOH
HOH
428
A
HOH
174
5
HOH
HOH
429
A
HOH
175
5
HOH
HOH
430
A
HOH
176
5
HOH
HOH
431
A
HOH
177
5
HOH
HOH
432
A
HOH
178
5
HOH
HOH
433
A
HOH
179
5
HOH
HOH
434
A
HOH
180
5
HOH
HOH
435
A
HOH
181
5
HOH
HOH
436
A
HOH
182
5
HOH
HOH
437
A
HOH
183
5
HOH
HOH
438
A
HOH
184
5
HOH
HOH
439
A
HOH
185
5
HOH
HOH
440
A
HOH
186
5
HOH
HOH
441
A
HOH
187
5
HOH
HOH
442
A
HOH
188
5
HOH
HOH
443
A
HOH
190
5
HOH
HOH
444
A
HOH
194
5
HOH
HOH
445
A
HOH
195
5
HOH
HOH
446
A
HOH
197
5
HOH
HOH
447
A
HOH
198
5
HOH
HOH
448
A
HOH
199
5
HOH
HOH
449
A
HOH
200
5
HOH
HOH
450
A
HOH
201
5
HOH
HOH
451
A
HOH
202
5
HOH
HOH
452
A
HOH
203
5
HOH
HOH
453
A
HOH
204
5
HOH
HOH
454
A
HOH
205
5
HOH
HOH
455
A
HOH
206
5
HOH
HOH
456
A
HOH
207
5
HOH
HOH
457
A
HOH
210
5
HOH
HOH
458
A
HOH
211
5
HOH
HOH
459
A
HOH
214
5
HOH
HOH
460
A
HOH
215
5
HOH
HOH
461
A
HOH
217
5
HOH
HOH
462
A
HOH
218
5
HOH
HOH
463
A
HOH
219
5
HOH
HOH
464
A
HOH
220
5
HOH
HOH
465
A
HOH
221
5
HOH
HOH
466
A
HOH
222
5
HOH
HOH
467
A
HOH
225
5
HOH
HOH
468
A
HOH
226
5
HOH
HOH
469
A
HOH
227
5
HOH
HOH
470
A
HOH
228
5
HOH
HOH
471
A
HOH
232
5
HOH
HOH
472
A
HOH
234
5
HOH
HOH
473
A
HOH
237
5
HOH
HOH
474
A
HOH
238
5
HOH
HOH
475
A
HOH
239
5
HOH
HOH
476
A
HOH
240
5
HOH
HOH
477
A
HOH
241
5
HOH
HOH
478
A
HOH
242
5
HOH
HOH
479
A
HOH
243
5
HOH
HOH
480
A
HOH
245
5
HOH
HOH
481
A
HOH
247
5
HOH
HOH
482
A
HOH
249
5
HOH
HOH
483
A
HOH
250
5
HOH
HOH
484
A
HOH
251
5
HOH
HOH
485
A
HOH
252
5
HOH
HOH
486
A
HOH
253
5
HOH
HOH
487
A
HOH
257
5
HOH
HOH
488
A
HOH
260
5
HOH
HOH
489
A
HOH
262
5
HOH
HOH
490
A
HOH
263
5
HOH
HOH
491
A
HOH
265
5
HOH
HOH
492
A
HOH
267
5
HOH
HOH
493
A
HOH
268
5
HOH
HOH
494
A
HOH
270
5
HOH
HOH
495
A
HOH
272
5
HOH
HOH
496
A
HOH
274
5
HOH
HOH
497
A
HOH
275
5
HOH
HOH
498
A
HOH
285
5
HOH
HOH
499
A
HOH
287
5
HOH
HOH
500
A
HOH
288
5
HOH
HOH
501
A
HOH
289
5
HOH
HOH
502
A
HOH
290
5
HOH
HOH
503
A
THR
2
n
1
THR
2
A
ILE
3
n
2
ILE
3
A
GLN
4
n
3
GLN
4
A
PRO
5
n
4
PRO
5
A
GLY
6
n
5
GLY
6
A
THR
7
n
6
THR
7
A
GLY
8
n
7
GLY
8
A
TYR
9
n
8
TYR
9
A
ASN
10
n
9
ASN
10
A
ASN
11
n
10
ASN
11
A
GLY
12
n
11
GLY
12
A
TYR
13
n
12
TYR
13
A
PHE
14
n
13
PHE
14
A
TYR
15
n
14
TYR
15
A
SER
16
n
15
SER
16
A
TYR
17
n
16
TYR
17
A
TRP
18
n
17
TRP
18
A
ASN
19
n
18
ASN
19
A
ASP
20
n
19
ASP
20
A
GLY
21
n
20
GLY
21
A
HIS
22
n
21
HIS
22
A
GLY
23
n
22
GLY
23
A
GLY
24
n
23
GLY
24
A
VAL
25
n
24
VAL
25
A
THR
26
n
25
THR
26
A
TYR
27
n
26
TYR
27
A
THR
28
n
27
THR
28
A
ASN
29
n
28
ASN
29
A
GLY
30
n
29
GLY
30
A
PRO
31
n
30
PRO
31
A
GLY
32
n
31
GLY
32
A
GLY
33
n
32
GLY
33
A
GLN
34
n
33
GLN
34
A
PHE
35
n
34
PHE
35
A
SER
36
n
35
SER
36
A
VAL
37
n
36
VAL
37
A
ASN
38
n
37
ASN
38
A
TRP
39
n
38
TRP
39
A
SER
40
n
39
SER
40
A
ASN
41
n
40
ASN
41
A
SER
42
n
41
SER
42
A
GLY
43
n
42
GLY
43
A
ASN
44
n
43
ASN
44
A
PHE
45
n
44
PHE
45
A
VAL
46
n
45
VAL
46
A
GLY
47
n
46
GLY
47
A
GLY
48
n
47
GLY
48
A
LYS
49
n
48
LYS
49
A
GLY
50
n
49
GLY
50
A
TRP
51
n
50
TRP
51
A
GLN
52
n
51
GLN
52
A
PRO
53
n
52
PRO
53
A
GLY
54
n
53
GLY
54
A
THR
55
n
54
THR
55
A
LYS
56
n
55
LYS
56
A
ASN
57
n
56
ASN
57
A
LYS
58
n
57
LYS
58
A
VAL
59
n
58
VAL
59
A
ILE
60
n
59
ILE
60
A
ASN
61
n
60
ASN
61
A
PHE
62
n
61
PHE
62
A
SER
63
n
62
SER
63
A
GLY
64
n
63
GLY
64
A
SER
65
n
64
SER
65
A
TYR
66
n
65
TYR
66
A
ASN
67
n
66
ASN
67
A
PRO
68
n
67
PRO
68
A
ASN
69
n
68
ASN
69
A
GLY
70
n
69
GLY
70
A
ASN
71
n
70
ASN
71
A
SER
72
n
71
SER
72
A
TYR
73
n
72
TYR
73
A
LEU
74
n
73
LEU
74
A
SER
75
n
74
SER
75
A
VAL
76
n
75
VAL
76
A
TYR
77
n
76
TYR
77
A
GLY
78
n
77
GLY
78
A
TRP
79
n
78
TRP
79
A
SER
80
n
79
SER
80
A
ARG
81
n
80
ARG
81
A
ASN
82
n
81
ASN
82
A
PRO
83
n
82
PRO
83
A
LEU
84
n
83
LEU
84
A
ILE
85
n
84
ILE
85
A
GLU
86
n
85
GLU
86
A
TYR
87
n
86
TYR
87
A
TYR
88
n
87
TYR
88
A
ILE
89
n
88
ILE
89
A
VAL
90
n
89
VAL
90
A
GLU
91
n
90
GLU
91
A
ASN
92
n
91
ASN
92
A
PHE
93
n
92
PHE
93
A
GLY
94
n
93
GLY
94
A
THR
95
n
94
THR
95
A
TYR
96
n
95
TYR
96
A
ASN
97
n
96
ASN
97
A
PRO
98
n
97
PRO
98
A
SER
99
n
98
SER
99
A
THR
100
n
99
THR
100
A
GLY
101
n
100
GLY
101
A
ALA
102
n
101
ALA
102
A
THR
103
n
102
THR
103
A
LYS
104
n
103
LYS
104
A
LEU
105
n
104
LEU
105
A
GLY
106
n
105
GLY
106
A
GLU
107
n
106
GLU
107
A
VAL
108
n
107
VAL
108
A
THR
109
n
108
THR
109
A
SER
110
n
109
SER
110
A
ASP
111
n
110
ASP
111
A
GLY
112
n
111
GLY
112
A
SER
113
n
112
SER
113
A
VAL
114
n
113
VAL
114
A
TYR
115
n
114
TYR
115
A
ASP
116
n
115
ASP
116
A
ILE
117
n
116
ILE
117
A
TYR
118
n
117
TYR
118
A
ARG
119
n
118
ARG
119
A
THR
120
n
119
THR
120
A
GLN
121
n
120
GLN
121
A
ARG
122
n
121
ARG
122
A
VAL
123
n
122
VAL
123
A
ASN
124
n
123
ASN
124
A
GLN
125
n
124
GLN
125
A
PRO
126
n
125
PRO
126
A
SER
127
n
126
SER
127
A
ILE
128
n
127
ILE
128
A
ILE
129
n
128
ILE
129
A
GLY
130
n
129
GLY
130
A
THR
131
n
130
THR
131
A
ALA
132
n
131
ALA
132
A
THR
133
n
132
THR
133
A
PHE
134
n
133
PHE
134
A
TYR
135
n
134
TYR
135
A
GLN
136
n
135
GLN
136
A
TYR
137
n
136
TYR
137
A
TRP
138
n
137
TRP
138
A
SER
139
n
138
SER
139
A
VAL
140
n
139
VAL
140
A
ARG
141
n
140
ARG
141
A
ARG
142
n
141
ARG
142
A
ASN
143
n
142
ASN
143
A
HIS
144
n
143
HIS
144
A
ARG
145
n
144
ARG
145
A
SER
146
n
145
SER
146
A
SER
147
n
146
SER
147
A
GLY
148
n
147
GLY
148
A
SER
149
n
148
SER
149
A
VAL
150
n
149
VAL
150
A
ASN
151
n
150
ASN
151
A
THR
152
n
151
THR
152
A
ALA
153
n
152
ALA
153
A
ASN
154
n
153
ASN
154
A
HIS
155
n
154
HIS
155
A
PHE
156
n
155
PHE
156
A
ASN
157
n
156
ASN
157
A
ALA
158
n
157
ALA
158
A
TRP
159
n
158
TRP
159
A
ALA
160
n
159
ALA
160
A
GLN
161
n
160
GLN
161
A
GLN
162
n
161
GLN
162
A
GLY
163
n
162
GLY
163
A
LEU
164
n
163
LEU
164
A
THR
165
n
164
THR
165
A
LEU
166
n
165
LEU
166
A
GLY
167
n
166
GLY
167
A
THR
168
n
167
THR
168
A
MET
169
n
168
MET
169
A
ASP
170
n
169
ASP
170
A
TYR
171
n
170
TYR
171
A
GLN
172
n
171
GLN
172
A
ILE
173
n
172
ILE
173
A
VAL
174
n
173
VAL
174
A
ALA
175
n
174
ALA
175
A
VAL
176
n
175
VAL
176
A
GLN
177
n
176
GLN
177
A
GLY
178
n
177
GLY
178
A
TYR
179
n
178
TYR
179
A
PHE
180
n
179
PHE
180
A
SER
181
n
180
SER
181
A
SER
182
n
181
SER
182
A
GLY
183
n
182
GLY
183
A
SER
184
n
183
SER
184
A
ALA
185
n
184
ALA
185
A
SER
186
n
185
SER
186
A
ILE
187
n
186
ILE
187
A
THR
188
n
187
THR
188
A
VAL
189
n
188
VAL
189
A
SER
190
n
189
SER
190
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASN
10
A
N
ASN
9
A
O
TYR
13
A
O
TYR
12
A
N
PHE
14
A
N
PHE
13
A
O
GLY
50
A
O
GLY
49
A
N
TRP
51
A
N
TRP
50
A
O
GLN
172
A
O
GLN
171
A
O
ASP
170
A
O
ASP
169
A
N
TRP
79
A
N
TRP
78
A
N
GLY
78
A
N
GLY
77
A
O
TYR
87
A
O
TYR
86
A
N
VAL
90
A
N
VAL
89
A
O
SER
139
A
O
SER
138
A
O
PHE
134
A
O
PHE
133
A
N
ARG
122
A
N
ARG
121
A
O
ILE
117
A
O
ILE
116
A
N
LEU
105
A
N
LEU
104
A
N
THR
28
A
N
THR
27
A
O
SER
36
A
O
SER
35
A
N
TRP
39
A
N
TRP
38
A
O
GLY
183
A
O
GLY
182
A
O
SER
184
A
O
SER
183
A
N
ASN
67
A
N
ASN
66
A
N
PHE
62
A
N
PHE
61
A
O
GLY
148
A
O
GLY
147
1
A
HOH
424
I
HOH
1
A
A
HG
HD1
SER
HIS
139
155
1.34
1
A
A
HH21
O
ARG
HOH
122
417
1.47
1
B
B
O4
O5
XYP
XYP
3
4
2.18
1
A
ASP
170
-104.61
-139.84
45.270
10.7507
4.040
0.1273
0.1107
0.1116
1.1510
18.5700
3239
63830
5.0700
90.8000
1.000
0.430
0.9494
0.0700
5% of random data selected
1
1.340
MOLECULAR REPLACEMENT
10.2500
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
1.1510
18.5700
203
1773
98
0
1472
0.012
1653
1.479
2262
0.080
230
0.007
287
15.838
547
0.1756
0.1550
1.1683
98
2428
2526
23
83.0000
0.1788
0.1502
1.1865
128
2419
2547
23
86.0000
0.1354
0.1371
1.2060
132
2440
2572
23
84.0000
0.1424
0.1288
1.2268
125
2450
2575
23
85.0000
0.1426
0.1285
1.2491
124
2408
2532
23
85.0000
0.1495
0.1163
1.2731
118
2454
2572
23
85.0000
0.1429
0.1133
1.2991
142
2464
2606
23
86.0000
0.1045
0.1084
1.3273
153
2454
2607
23
86.0000
0.1235
0.1036
1.3582
122
2518
2640
23
88.0000
0.1254
0.1001
1.3922
114
2535
2649
23
87.0000
0.1263
0.0947
1.4298
132
2549
2681
23
88.0000
0.1345
0.0927
1.4718
157
2573
2730
23
90.0000
0.1213
0.0886
1.5193
163
2593
2756
23
91.0000
0.0996
0.0852
1.5736
132
2666
2798
23
92.0000
0.1163
0.0859
1.6366
126
2706
2832
23
94.0000
0.1117
0.0897
1.7110
163
2715
2878
23
94.0000
0.1272
0.0904
1.8011
161
2766
2927
23
96.0000
0.1133
0.0909
1.9139
163
2792
2955
23
96.0000
0.1058
0.0913
2.0615
160
2818
2978
23
97.0000
0.1107
0.0937
2.2686
137
2886
3023
23
97.0000
0.1276
0.1116
2.5961
157
2886
3043
23
98.0000
0.1244
0.1187
3.2679
165
2970
3135
23
99.0000
0.1515
0.1434
18.5719
167
3101
3268
23
99.0000
1.15
4HK8
63877
1
90.8
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8_1069
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
DENZO
phasing
PHASER
Crystal Structures of Mutant Endo- -1,4-xylanase II Complexed with substrate (1.15 A) and Products (1.6 A)
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
biological unit is the same as asym.
A
THR
152
A
THR
151
HELX_P
A
GLN
162
A
GLN
161
1
1
11
covale
1.397
both
B
XYP
1
B
O4
XYP
1_555
B
XYP
2
B
C1
XYP
1_555
covale
1.384
both
B
XYP
2
B
O4
XYP
1_555
B
XYP
3
B
C1
XYP
1_555
covale
1.450
both
B
XYP
3
B
O4
XYP
1_555
B
XYP
4
B
C1
XYP
1_555
covale
1.403
both
B
XYP
4
B
O4
XYP
1_555
B
XYP
5
B
C1
XYP
1_555
covale
1.386
both
B
XYP
5
B
O4
XYP
1_555
B
XYP
6
B
C1
XYP
1_555
HYDROLASE
xylanase II, xylohexaose, xylotriose, induced fit mechanism, oxocarbenium ion, palm-hand motif, HYDROLASE
A
GLN
52
A
GLN
51
1
A
PRO
53
A
PRO
52
-6.68
A
ASN
82
A
ASN
81
1
A
PRO
83
A
PRO
82
5.70
XYN2_HYPJE
UNP
1
34
P36217
TIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWSR
NPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWAQ
QGLTLGTMDYQIVAVEGYFSSGSASITVS
34
222
4HK8
2
190
P36217
A
1
1
189
1
GLU
engineered mutation
GLN
177
4HK8
A
P36217
UNP
209
176
9
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLY
6
A
GLY
5
A
ASN
10
A
ASN
9
A
TYR
13
A
TYR
12
A
ASN
19
A
ASN
18
A
ASN
44
A
ASN
43
A
TRP
51
A
TRP
50
A
THR
168
A
THR
167
A
TYR
179
A
TYR
178
A
SER
72
A
SER
71
A
ARG
81
A
ARG
80
A
ILE
85
A
ILE
84
A
PHE
93
A
PHE
92
A
ALA
132
A
ALA
131
A
ARG
141
A
ARG
140
A
SER
113
A
SER
112
A
GLN
125
A
GLN
124
A
THR
103
A
THR
102
A
SER
110
A
SER
109
A
VAL
25
A
VAL
24
A
ASN
29
A
ASN
28
A
GLN
34
A
GLN
33
A
TRP
39
A
TRP
38
A
SER
182
A
SER
181
A
SER
190
A
SER
189
A
VAL
59
A
VAL
58
A
ASN
69
A
ASN
68
A
GLY
148
A
GLY
147
A
ASN
151
A
ASN
150
18
P 21 2 21